Citrus Sinensis ID: 036303
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FLJ4 | 654 | Pentatricopeptide repeat- | yes | no | 0.922 | 0.853 | 0.528 | 1e-169 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.922 | 0.733 | 0.325 | 1e-85 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.887 | 0.586 | 0.335 | 7e-81 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.905 | 0.733 | 0.312 | 4e-79 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.885 | 0.590 | 0.321 | 1e-78 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.842 | 0.830 | 0.315 | 2e-74 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.907 | 0.500 | 0.289 | 3e-73 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.811 | 0.776 | 0.303 | 2e-72 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.834 | 0.518 | 0.292 | 4e-72 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.836 | 0.803 | 0.306 | 5e-71 |
| >sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 595 bits (1533), Expect = e-169, Method: Compositional matrix adjust.
Identities = 297/562 (52%), Positives = 383/562 (68%), Gaps = 4/562 (0%)
Query: 1 IFYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLII 60
+ +VL A Y ARCLIK + E L + +P ++ + +FNAL ++ PKF+ VFS LI+
Sbjct: 81 VIHVLTGAHKYTLARCLIKSLIERLKRHSEPSNMSHRLFNALEDIQSPKFSIGVFSLLIM 140
Query: 61 AFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV 120
F EMG EEALWV R+++ P +AC ++LNGL+++ +FDSVW Y+ M+ GLV DV
Sbjct: 141 EFLEMGLFEEALWVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVH 200
Query: 121 TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSM 180
Y VL CC QG K L DEM GI+P V IYTI I LC +NKM EAE MF M
Sbjct: 201 IYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELM 260
Query: 181 RECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGEL 240
++ GV+PNLYTY+A++DGYCK +V +A Y E+L L PNVV FG L+DG CK EL
Sbjct: 261 KKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKAREL 320
Query: 241 RAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNIL 300
A + FVHM KFGV PN++VYNCLI GHCK+GN+ EA+ L SEME +SPDVFTY IL
Sbjct: 321 VTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTIL 380
Query: 301 IKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGV 360
I GLC Q+ A L QKM E I + TYNSLI GYCKE +ME+AL +CS+MT GV
Sbjct: 381 INGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGV 440
Query: 361 EPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLR 420
EPN++TFS+LIDG C +I AAMGLY EM IK +VPDVV +TALID K+ NMKE LR
Sbjct: 441 EPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALR 500
Query: 421 LYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAII 480
LY +MLEA I P+ T + L+ G +K GR+S A++F+ E + NHV + +I
Sbjct: 501 LYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCW----NHVGFTCLI 556
Query: 481 QALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIV 540
+ LC +G IL+AS+ FSDMRS + PD C+Y +ML+G L+ KR+ D MML DMIK GI+
Sbjct: 557 EGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGIL 616
Query: 541 PDAVINQVMVRGYQENGDLKSA 562
P+ ++NQ++ R YQ NG +KSA
Sbjct: 617 PNLLVNQLLARFYQANGYVKSA 638
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 187/574 (32%), Positives = 310/574 (54%), Gaps = 16/574 (2%)
Query: 1 IFYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLII 60
+ ++L A++Y +A ++K++ + K + V + ++ +P F VF L
Sbjct: 148 VAHILFCARMYYDANSVLKEMVLS-----KADCDVFDVLWSTRNVCVPGF--GVFDALFS 200
Query: 61 AFSEMGHIEEALWVYRKIE---VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVA 117
++G +EEA+ + K++ V P ++CN LL+ K GK D V F+++M+ G
Sbjct: 201 VLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARP 260
Query: 118 DVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMF 177
V TY ++IDC C +GDV A LF+EM +G+ P V Y +I G ++ + F
Sbjct: 261 TVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFF 320
Query: 178 RSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKV 237
M++ P++ TYNAL++ +CK + LEFY EM + L+PNVV++ L+D CK
Sbjct: 321 EEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKE 380
Query: 238 GELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTY 297
G ++ A F+V M + G+ PN + Y LID +CK GNL +A L +EM + + +V TY
Sbjct: 381 GMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTY 440
Query: 298 NILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTE 357
LI GLC +++ AE L KM G++ N+ +YN+LI G+ K +M++AL + +++
Sbjct: 441 TALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKG 500
Query: 358 KGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKE 417
+G++P+++ + + I G C I+AA + EM + + +++T L+D K GN E
Sbjct: 501 RGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTE 560
Query: 418 TLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYA 477
L L EM E I +V T LI GL KN +S A+++F ++ D G N ++
Sbjct: 561 GLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISN--DFGL-QANAAIFT 617
Query: 478 AIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKM 537
A+I LC D Q+ A+ LF M L PD YT+++ G + +L+ + L M ++
Sbjct: 618 AMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEI 677
Query: 538 GIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKE 571
G+ D + +V G L+ A FL+E
Sbjct: 678 GMKLDLLAYTSLVWGLSHCNQLQKA---RSFLEE 708
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (772), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 184/548 (33%), Positives = 282/548 (51%), Gaps = 11/548 (2%)
Query: 55 FSTLIIAFSEMGHIEEALWVYRKI---EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMV 111
++TL+ + + G ++E VY ++ +V P I N ++NG K G + ++ ++V
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 112 LCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMV 171
GL D TY LI C + D+ A +F+EM KG V YT LIHGLC ++
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 172 EAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLM 231
EA +F M++ P + TY L+ C + AL EM ++PN+ T+ VL+
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365
Query: 232 DGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEIS 291
D LC + A M + G+ PN+ YN LI+G+CK G + +A+ + ME ++S
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLS 425
Query: 292 PDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSV 351
P+ TYN LIKG C + A G+L KM + +L +VVTYNSLIDG C+ G+ + A +
Sbjct: 426 PNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRL 484
Query: 352 CSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSK 411
S M ++G+ P+ T++S+ID CK+ ++ A L+ + K + P+VV++TALIDG K
Sbjct: 485 LSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCK 544
Query: 412 DGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSP 471
G + E + ++ML P+ T ++LIHGL +G++ A EK K P
Sbjct: 545 AGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEA-TLLEEKMVKIG---LQP 600
Query: 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLL 531
+I L DG A F M S +PD TYTT ++ R R+LD ++
Sbjct: 601 TVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMM 660
Query: 532 ADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTRSFLGHL 591
A M + G+ PD +++GY + G AF + LK R E HT S + HL
Sbjct: 661 AKMRENGVSPDLFTYSSLIKGYGDLGQTNFAF---DVLKRMRDTGCEPSQHTFLSLIKHL 717
Query: 592 KPTVYKEQ 599
Y +Q
Sbjct: 718 LEMKYGKQ 725
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (757), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 191/611 (31%), Positives = 301/611 (49%), Gaps = 63/611 (10%)
Query: 2 FYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALN-SLEIPKFNPSVFSTLII 60
++L KLYK A+ L +DV L VF +L + ++ SVF ++
Sbjct: 87 LHILTKFKLYKTAQILAEDVAAKTLDDE----YASLVFKSLQETYDLCYSTSSVFDLVVK 142
Query: 61 AFSEMGHIEEALWVYRKIEV---LPAIQACNALLNGLIKKGKFDSVWE-FYEEMVLCGLV 116
++S + I++AL + + +P + + NA+L+ I+ + S E ++EM+ +
Sbjct: 143 SYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVS 202
Query: 117 ADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESM 176
+V TY +LI C G++ AL LFD+M KG P VV Y LI G C K+ + +
Sbjct: 203 PNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKL 262
Query: 177 FRSMRECGVVPNL-----------------------------------YTYNALMDGYCK 201
RSM G+ PNL TYN L+ GYCK
Sbjct: 263 LRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCK 322
Query: 202 VADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFV 261
+ ++AL + EML H L P+V+T+ L+ +CK G + A F M G+ PN
Sbjct: 323 EGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERT 382
Query: 262 YNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMY 321
Y L+DG + G + EA + EM SP V TYN LI G C G++E A +L+ M
Sbjct: 383 YTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMK 442
Query: 322 KEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNID 381
++G+ +VV+Y++++ G+C+ D+++AL V +M EKG++P+ +T+SSLI G C+
Sbjct: 443 EKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTK 502
Query: 382 AAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLI 441
A LY EM+ L PD +TALI+ +G++++ L+L+ EM+E + P V T S LI
Sbjct: 503 EACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLI 562
Query: 442 HGLFKNGRISNA----LNFFLEKTDKTDGGYCSPNHVL-----------YAAIIQALCYD 486
+GL K R A L F E++ +D Y H L ++I+ C
Sbjct: 563 NGLNKQSRTREAKRLLLKLFYEESVPSDVTY----HTLIENCSNIEFKSVVSLIKGFCMK 618
Query: 487 GQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVIN 546
G + +A ++F M N +PD Y M+ G RA + L +M+K G + V
Sbjct: 619 GMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTV 678
Query: 547 QVMVRGYQENG 557
+V+ + G
Sbjct: 679 IALVKALHKEG 689
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 184/573 (32%), Positives = 290/573 (50%), Gaps = 37/573 (6%)
Query: 49 KFNPS--VFSTLIIAFSEMGHIEEALWVYRKI---EVLPAIQACNALLNGLIKKGKFDSV 103
+F+PS S+L+ + G IEEAL + +++ V P + NAL++ L K KF
Sbjct: 327 RFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEA 386
Query: 104 WEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHG 163
++ M GL + VTY +LID C +G + AL+ EM+D G++ +V Y LI+G
Sbjct: 387 ELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLING 446
Query: 164 LCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPN 223
C + AE M + P + TY +LM GYC +N+AL YHEM + P+
Sbjct: 447 HCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPS 506
Query: 224 VVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCS 283
+ TF L+ GL + G +R A F MA++ V PN YN +I+G+C+ G++ +A
Sbjct: 507 IYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLK 566
Query: 284 EMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEG 343
EM + I PD ++Y LI GLC GQ A+ + ++K N + Y L+ G+C+EG
Sbjct: 567 EMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREG 626
Query: 344 DMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFT 403
+E+ALSVC +M ++GV+ ++V + LIDG K + GL EM + L PD V++T
Sbjct: 627 KLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYT 686
Query: 404 ALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG--------------- 448
++ID SK G+ KE ++ M+ P+ T +++I+GL K G
Sbjct: 687 SMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPV 746
Query: 449 -RISNALNF--FLEKTDKTDGGYCS-------------PNHVLYAAIIQALCYDGQILKA 492
+ N + + FL+ K + N Y +I+ C G+I +A
Sbjct: 747 SSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEA 806
Query: 493 SKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRG 552
S+L + M D + PD TYTTM+ L R + + L M + GI PD V ++ G
Sbjct: 807 SELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHG 866
Query: 553 YQENGDLKSAFRC-SEFLKESRIGSSETEGHTT 584
G++ A +E L++ I +++T TT
Sbjct: 867 CCVAGEMGKATELRNEMLRQGLIPNNKTSRTTT 899
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/516 (31%), Positives = 276/516 (53%), Gaps = 6/516 (1%)
Query: 77 KIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVM 136
K P+I + LL+ + K KFD V F E+M + G+ ++ TY ++I+C C + +
Sbjct: 58 KSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLS 117
Query: 137 KALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALM 196
AL + +M+ G P++V L++G C+ N++ EA ++ M E G P+ T+ L+
Sbjct: 118 FALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLV 177
Query: 197 DGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVF 256
G + + A+ M+ QP++VT+G +++GLCK GE A N M K +
Sbjct: 178 HGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE 237
Query: 257 PNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGL 316
++ +Y+ +ID CK ++ +A++L +EM+ I PDVFTY+ LI LC G+ A L
Sbjct: 238 ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 297
Query: 317 LQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK 376
L M + I NVVT+NSLID + KEG + +A + +M ++ ++PN+VT++SLI+G C
Sbjct: 298 LSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCM 357
Query: 377 AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFT 436
+D A ++T MV K +PDVV + LI+G K + + + L+++M + + T
Sbjct: 358 HDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVT 417
Query: 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLF 496
++LIHG F+ NA F K +DG + PN + Y ++ LC +G++ KA +F
Sbjct: 418 YTTLIHGFFQASDCDNAQMVF--KQMVSDGVH--PNIMTYNTLLDGLCKNGKLEKAMVVF 473
Query: 497 SDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQEN 556
++ + PD TY M G+ +A ++ D L + G+ PD + M+ G+ +
Sbjct: 474 EYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKK 533
Query: 557 GDLKSAFRCSEFLKESRIGSSETEGHTTRSFLGHLK 592
G + A+ + F+K G G HL+
Sbjct: 534 GLKEEAY--TLFIKMKEDGPLPDSGTYNTLIRAHLR 567
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 276 bits (706), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 163/564 (28%), Positives = 289/564 (51%), Gaps = 15/564 (2%)
Query: 3 YVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNAL-NSLEIPKFNPSVFSTLIIA 61
++L A++Y AR ++K+++ L S K V F AL + + NPSV+ LI
Sbjct: 80 HILVRARMYDPARHILKELS---LMSGKSSFV----FGALMTTYRLCNSNPSVYDILIRV 132
Query: 62 FSEMGHIEEALWVYRKIEVL---PAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVAD 118
+ G I+++L ++R + + P++ CNA+L ++K G+ SVW F +EM+ + D
Sbjct: 133 YLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPD 192
Query: 119 VVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFR 178
V T+ +LI+ C +G K+ L +M G PT+V Y ++H C + + A +
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252
Query: 179 SMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVG 238
M+ GV ++ TYN L+ C+ + + +M + PN VT+ L++G G
Sbjct: 253 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEG 312
Query: 239 ELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYN 298
++ A M FG+ PN +N LIDGH GN EA+ + ME ++P +Y
Sbjct: 313 KVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYG 372
Query: 299 ILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEK 358
+L+ GLC + + A G +M + G+ +TY +IDG CK G +++A+ + ++M++
Sbjct: 373 VLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKD 432
Query: 359 GVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKET 418
G++P++VT+S+LI+G CK G A + + L P+ ++++ LI + G +KE
Sbjct: 433 GIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEA 492
Query: 419 LRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAA 478
+R+Y+ M+ T FT + L+ L K G+++ A F + +DG PN V +
Sbjct: 493 IRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFM--RCMTSDG--ILPNTVSFDC 548
Query: 479 IIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMG 538
+I G+ LKA +F +M P TY ++L+GL + + + L + +
Sbjct: 549 LINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVP 608
Query: 539 IVPDAVINQVMVRGYQENGDLKSA 562
D V+ ++ ++G+L A
Sbjct: 609 AAVDTVMYNTLLTAMCKSGNLAKA 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (699), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/495 (30%), Positives = 266/495 (53%), Gaps = 4/495 (0%)
Query: 77 KIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVM 136
K P+I N LL+ + K KF+ V E+M G+ D+ TY + I+C C + +
Sbjct: 76 KSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLS 135
Query: 137 KALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALM 196
AL + +M+ G EP +V + L++G C+ ++ +A ++ M E G P+ +T+ L+
Sbjct: 136 LALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLI 195
Query: 197 DGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVF 256
G + A+ +M+ QP++VT+G +++GLCK G++ A + M K +
Sbjct: 196 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 255
Query: 257 PNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGL 316
++ +YN +IDG CK ++ +A++L +EM+ I PDVFTY+ LI LC G+ A L
Sbjct: 256 ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 315
Query: 317 LQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK 376
L M + I NVVT+++LID + KEG + +A + +M ++ ++P++ T+SSLI+G C
Sbjct: 316 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 375
Query: 377 AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFT 436
+D A ++ M+ K P+VV ++ LI G K ++E + L++EM + + + T
Sbjct: 376 HDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVT 435
Query: 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLF 496
++LIHG F+ NA F + PN + Y ++ LC +G++ KA +F
Sbjct: 436 YTTLIHGFFQARDCDNAQMVFKQMVSVG----VHPNILTYNILLDGLCKNGKLAKAMVVF 491
Query: 497 SDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQEN 556
++ + PD TY M+ G+ +A ++ D L ++ G+ P+ + M+ G+
Sbjct: 492 EYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRK 551
Query: 557 GDLKSAFRCSEFLKE 571
G + A + +KE
Sbjct: 552 GSKEEADSLLKKMKE 566
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 272 bits (696), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 159/544 (29%), Positives = 271/544 (49%), Gaps = 39/544 (7%)
Query: 52 PSVFSTLIIAFSEMGHIEEALWVYRKI---EVLPAIQACNALLNGLIKKGKFDSVWEFYE 108
P ++ I S+ G +E+A ++ + ++P QA +L+ G ++ +E
Sbjct: 347 PYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLV 406
Query: 109 EMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNEN 168
EM +V TYG ++ C GD+ A N+ EMI G P VVIYT LI +
Sbjct: 407 EMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNS 466
Query: 169 KMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFG 228
+ +A + + M+E G+ P+++ YN+L+ G K ++ A F EM+ + L+PN T+G
Sbjct: 467 RFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526
Query: 229 VLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMS-------- 280
+ G + E +A + M + GV PN + LI+ +CK G + EA S
Sbjct: 527 AFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQ 586
Query: 281 ---------------------------LCSEMEKFEISPDVFTYNILIKGLCGVGQLEGA 313
+ EM I+PDVF+Y +LI G +G ++ A
Sbjct: 587 GILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKA 646
Query: 314 EGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDG 373
+ +M +EG+ NV+ YN L+ G+C+ G++EKA + +M+ KG+ PN VT+ ++IDG
Sbjct: 647 SSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDG 706
Query: 374 QCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPS 433
CK+G++ A L+ EM +K LVPD V+T L+DG + +++ + ++ + S
Sbjct: 707 YCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKG-CASS 765
Query: 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKAS 493
++LI+ +FK G+ D + + PN V Y +I LC +G + A
Sbjct: 766 TAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAK 825
Query: 494 KLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGY 553
+LF M++ NL P TYT++L G + R ++ + + I GI PD ++ V++ +
Sbjct: 826 ELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAF 885
Query: 554 QENG 557
+ G
Sbjct: 886 LKEG 889
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (687), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 158/515 (30%), Positives = 274/515 (53%), Gaps = 9/515 (1%)
Query: 77 KIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVM 136
K P+I + LL+ + K KFD V E+M G+ ++ TY +LI+C C + +
Sbjct: 74 KSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLS 133
Query: 137 KALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALM 196
AL + +M+ G EP +V L++G C+ N++ +A S+ M E G P+ +T+N L+
Sbjct: 134 LALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLI 193
Query: 197 DGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVF 256
G + + A+ M+ QP++VT+G++++GLCK G++ A + M + +
Sbjct: 194 HGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIE 253
Query: 257 PNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGL 316
P + +YN +ID C N+ +A++L +EM+ I P+V TYN LI+ LC G+ A L
Sbjct: 254 PGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 313
Query: 317 LQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK 376
L M + I NVVT+++LID + KEG + +A + +M ++ ++P++ T+SSLI+G C
Sbjct: 314 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 373
Query: 377 AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFT 436
+D A ++ M+ K P+VV + LI G K + E + L++EM + + + T
Sbjct: 374 HDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVT 433
Query: 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLF 496
++LIHG F+ NA F K +DG P+ + Y+ ++ LC +G++ A +F
Sbjct: 434 YTTLIHGFFQARECDNAQIVF--KQMVSDG--VLPDIMTYSILLDGLCNNGKVETALVVF 489
Query: 497 SDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQEN 556
++ + PD TY M+ G+ +A ++ D L + G+ P+ V M+ G+
Sbjct: 490 EYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 549
Query: 557 G---DLKSAFRCSEFLKESRIGSSETEGHTTRSFL 588
G + + FR E +E + S T R+ L
Sbjct: 550 GLKEEADALFR--EMKEEGPLPDSGTYNTLIRAHL 582
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| 359491317 | 665 | PREDICTED: pentatricopeptide repeat-cont | 0.952 | 0.866 | 0.627 | 0.0 | |
| 147817754 | 1060 | hypothetical protein VITISV_031722 [Viti | 0.966 | 0.551 | 0.616 | 0.0 | |
| 449521772 | 645 | PREDICTED: pentatricopeptide repeat-cont | 0.947 | 0.888 | 0.558 | 0.0 | |
| 297733951 | 948 | unnamed protein product [Vitis vinifera] | 0.770 | 0.491 | 0.657 | 1e-180 | |
| 15240249 | 654 | pentatricopeptide repeat-containing prot | 0.922 | 0.853 | 0.528 | 1e-167 | |
| 297793693 | 732 | pentatricopeptide repeat-containing prot | 0.928 | 0.767 | 0.522 | 1e-166 | |
| 356507117 | 498 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.811 | 0.985 | 0.545 | 1e-150 | |
| 255547341 | 517 | pentatricopeptide repeat-containing prot | 0.707 | 0.827 | 0.546 | 1e-132 | |
| 414885390 | 645 | TPA: hypothetical protein ZEAMMB73_28058 | 0.798 | 0.748 | 0.440 | 1e-122 | |
| 242044666 | 637 | hypothetical protein SORBIDRAFT_02g02450 | 0.8 | 0.759 | 0.432 | 1e-118 |
| >gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61400-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/586 (62%), Positives = 453/586 (77%), Gaps = 10/586 (1%)
Query: 1 IFYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLII 60
I +VL AKLY ARCL++D+ + L SR+ +C SVFN L+ LE KF P+VF LII
Sbjct: 76 IIHVLTGAKLYAKARCLMRDLIQCLQNSRRSR-ICCSVFNVLSRLESSKFTPNVFGVLII 134
Query: 61 AFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV 120
AFSEMG +EEALWVY K++VLPA+QACN +L+GL+KKG+FD++W+ Y +MV G +VV
Sbjct: 135 AFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVV 194
Query: 121 TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSM 180
TYG LID CC QGD +KA LFDEMI+K I PTVVIYTILI GLC E+++ EAESMFR+M
Sbjct: 195 TYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTM 254
Query: 181 RECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGEL 240
R G++PNLYTYN +MDGYCK+A V +ALE Y EML L PNVVTFG+L+DGLCK E+
Sbjct: 255 RNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEM 314
Query: 241 RAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNIL 300
+A F + MA FGV PNIFVYNCLIDG+CKAGNL EA+SL SE+EK EI PDVFTY+IL
Sbjct: 315 VSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSIL 374
Query: 301 IKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGV 360
IKGLCGV ++E A+GLLQ+M K+G L N VTYN+LIDGYCKEG+MEKA+ VCSQMTEKG+
Sbjct: 375 IKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI 434
Query: 361 EPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLR 420
EPN++TFS+LIDG CKAG ++AAMGLYTEMVIK L+PDVV +TALIDG KDGN KE R
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494
Query: 421 LYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFL---------EKTDKTDGGYCSP 471
L+KEM EA + P+VFT+S LI GL K+GRIS+A+ FL KT++ D CSP
Sbjct: 495 LHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSP 554
Query: 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLL 531
NHV+Y A+IQ LC DG+I KASK FSDMR LRPD T +++G RA + DVMML
Sbjct: 555 NHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQ 614
Query: 532 ADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577
AD++KMGI+P++ + +V+ +GY+E+G LKSA RCSE L IG S
Sbjct: 615 ADILKMGIIPNSSVYRVLAKGYEESGYLKSALRCSEDLSGIGIGCS 660
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/597 (61%), Positives = 457/597 (76%), Gaps = 12/597 (2%)
Query: 1 IFYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLII 60
I +VL AKLY ARCL++D+ + L KSR+ +C SVFN L+ LE KF P+VF LII
Sbjct: 76 IIHVLTGAKLYAKARCLMRDLIQCLQKSRRSR-ICCSVFNVLSRLESSKFTPNVFGVLII 134
Query: 61 AFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV 120
AFSEMG +EEALWVY K++VLPA+QACN +L+GL+KKG+FD++W+ Y +MV G +VV
Sbjct: 135 AFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVV 194
Query: 121 TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSM 180
TYG LID CC QGD +KA LFDEMI+K I PTVVIYTILI GLC E+++ EAESMFR+M
Sbjct: 195 TYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTM 254
Query: 181 RECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGEL 240
R G++PNLYTYN +MDGYCK+A V +ALE Y EML L PNVVTFG+L+DGLCK E+
Sbjct: 255 RNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEM 314
Query: 241 RAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNIL 300
+A F + MA FGV PNIFVYNCLIDG+CKAGNL EA+SL SE+EK EI PDVFTY+IL
Sbjct: 315 VSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSIL 374
Query: 301 IKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGV 360
IKGLCGV ++E A+GLLQ+M K+G L N VTYN+LIDGYCKEG+MEKA+ VCSQMTEKG+
Sbjct: 375 IKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI 434
Query: 361 EPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLR 420
EPN++TFS+LIDG CKAG ++AAMGLYTEMVIK L+PDVV +TALIDG KDGN KE R
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494
Query: 421 LYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFL---------EKTDKTDGGYCSP 471
L+KEM EA + P+VFT+S LI GL K+GRIS+A+ FL KT++ D CSP
Sbjct: 495 LHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSP 554
Query: 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLL 531
NHV+Y A+IQ LC DG+I KASK FSDMR LRPD T +++G RA + DVMML
Sbjct: 555 NHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQ 614
Query: 532 ADMIKMGIVPDAVINQVMVRGYQENGDLKSAFR-CSEFLKE-SRIGSSETEGHTTRS 586
AD++KMGI+P++ + +V+ +GY+E+G LKSA C E ++ R+ S +T RS
Sbjct: 615 ADILKMGIIPNSSVYRVLAKGYEESGYLKSALSFCGEGVQPLDRVNSEPWGSYTIRS 671
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61400-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/584 (55%), Positives = 421/584 (72%), Gaps = 11/584 (1%)
Query: 1 IFYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLII 60
I +VL +KL +AR L+ D+ +NL+KS KP+H C F+ L+ L+ KF P+V+ LII
Sbjct: 64 IIHVLVGSKLLSHARYLLNDLVQNLVKSHKPYHACQLAFSELSRLKSSKFTPNVYGELII 123
Query: 61 AFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV 120
+M +EEAL +Y K+ IQACN LL L+K G+F+ +W YEEM+ GL V+
Sbjct: 124 VLCKMELVEEALSMYHKVGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVI 183
Query: 121 TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSM 180
T+G LID CC QGD+++A +FDEM KGI PTV++YTILI GLC++NK+ EAESM R+M
Sbjct: 184 TFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAM 243
Query: 181 RECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGEL 240
RE GV PN+YTYN LMDGYCK+A+ +AL Y +ML L P+VVTFG+L+DGLCK GE+
Sbjct: 244 REVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEM 303
Query: 241 RAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNIL 300
+AA N FV+M KF V PNI VYN LID +CK G++ EAM+L E+E+FE+SPDVFTY+IL
Sbjct: 304 KAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSIL 363
Query: 301 IKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGV 360
I+GLC V + E A + +KM KEGILAN VTYNSLIDG CKEG M+KAL +CSQMTE GV
Sbjct: 364 IRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGV 423
Query: 361 EPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLR 420
EPNV+TFS+LIDG CK N+ AAMG+Y+EMVIKSL PDVV +TA+IDG K G+MKE L+
Sbjct: 424 EPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALK 483
Query: 421 LYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTD------KTDGGYCSP--- 471
LY +ML+ ITP+ +T+S L+ GL K+G+IS+AL F EK + D G P
Sbjct: 484 LYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLT 543
Query: 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLL 531
NHV Y A+I LC DGQ KA KLFSDMR L+PD Y MLRGL + K +L MML
Sbjct: 544 NHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYIL--MMLH 601
Query: 532 ADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575
ADM+K G++P++ ++ ++ YQE+G LKSA CS+ L+E+ G
Sbjct: 602 ADMLKFGVIPNSAVHVILCECYQESGFLKSAQNCSKDLEENLHG 645
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 307/467 (65%), Positives = 372/467 (79%), Gaps = 1/467 (0%)
Query: 1 IFYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLII 60
I +VL AKLY ARCL++D+ + L SR+ +C SVFN L+ LE KF P+VF LII
Sbjct: 76 IIHVLTGAKLYAKARCLMRDLIQCLQNSRR-SRICCSVFNVLSRLESSKFTPNVFGVLII 134
Query: 61 AFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV 120
AFSEMG +EEALWVY K++VLPA+QACN +L+GL+KKG+FD++W+ Y +MV G +VV
Sbjct: 135 AFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVV 194
Query: 121 TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSM 180
TYG LID CC QGD +KA LFDEMI+K I PTVVIYTILI GLC E+++ EAESMFR+M
Sbjct: 195 TYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTM 254
Query: 181 RECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGEL 240
R G++PNLYTYN +MDGYCK+A V +ALE Y EML L PNVVTFG+L+DGLCK E+
Sbjct: 255 RNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEM 314
Query: 241 RAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNIL 300
+A F + MA FGV PNIFVYNCLIDG+CKAGNL EA+SL SE+EK EI PDVFTY+IL
Sbjct: 315 VSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSIL 374
Query: 301 IKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGV 360
IKGLCGV ++E A+GLLQ+M K+G L N VTYN+LIDGYCKEG+MEKA+ VCSQMTEKG+
Sbjct: 375 IKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI 434
Query: 361 EPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLR 420
EPN++TFS+LIDG CKAG ++AAMGLYTEMVIK L+PDVV +TALIDG KDGN KE R
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494
Query: 421 LYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG 467
L+KEM EA + P+VFT+S LI GL K+GRIS+A+ FL KT G
Sbjct: 495 LHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTG 541
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana] gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 297/562 (52%), Positives = 383/562 (68%), Gaps = 4/562 (0%)
Query: 1 IFYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLII 60
+ +VL A Y ARCLIK + E L + +P ++ + +FNAL ++ PKF+ VFS LI+
Sbjct: 81 VIHVLTGAHKYTLARCLIKSLIERLKRHSEPSNMSHRLFNALEDIQSPKFSIGVFSLLIM 140
Query: 61 AFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV 120
F EMG EEALWV R+++ P +AC ++LNGL+++ +FDSVW Y+ M+ GLV DV
Sbjct: 141 EFLEMGLFEEALWVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVH 200
Query: 121 TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSM 180
Y VL CC QG K L DEM GI+P V IYTI I LC +NKM EAE MF M
Sbjct: 201 IYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELM 260
Query: 181 RECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGEL 240
++ GV+PNLYTY+A++DGYCK +V +A Y E+L L PNVV FG L+DG CK EL
Sbjct: 261 KKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKAREL 320
Query: 241 RAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNIL 300
A + FVHM KFGV PN++VYNCLI GHCK+GN+ EA+ L SEME +SPDVFTY IL
Sbjct: 321 VTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTIL 380
Query: 301 IKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGV 360
I GLC Q+ A L QKM E I + TYNSLI GYCKE +ME+AL +CS+MT GV
Sbjct: 381 INGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGV 440
Query: 361 EPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLR 420
EPN++TFS+LIDG C +I AAMGLY EM IK +VPDVV +TALID K+ NMKE LR
Sbjct: 441 EPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALR 500
Query: 421 LYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAII 480
LY +MLEA I P+ T + L+ G +K GR+S A++F+ E + NHV + +I
Sbjct: 501 LYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCW----NHVGFTCLI 556
Query: 481 QALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIV 540
+ LC +G IL+AS+ FSDMRS + PD C+Y +ML+G L+ KR+ D MML DMIK GI+
Sbjct: 557 EGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGIL 616
Query: 541 PDAVINQVMVRGYQENGDLKSA 562
P+ ++NQ++ R YQ NG +KSA
Sbjct: 617 PNLLVNQLLARFYQANGYVKSA 638
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 296/566 (52%), Positives = 381/566 (67%), Gaps = 4/566 (0%)
Query: 1 IFYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLII 60
+ +VL A Y ARCLIK + E L + +P ++ + +FNAL ++ PKF+ VFS LI+
Sbjct: 115 VIHVLTGAHKYTLARCLIKSLIERLRRYSEPTNISHRLFNALEDIQSPKFSIGVFSLLIM 174
Query: 61 AFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV 120
F EMG E+ALWV R++ P +AC A+LNGL+++ +FDSVW Y+ M+ GLV DV
Sbjct: 175 EFLEMGLFEDALWVSREMRCSPDSKACLAILNGLVRRRRFDSVWVDYQLMISRGLVPDVH 234
Query: 121 TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSM 180
Y VL CC QG K L DEM G++P V IYTI I LC ENKM EAE MF M
Sbjct: 235 IYSVLFQCCFKQGFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELM 294
Query: 181 RECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGEL 240
+ GVVPNLYTY+A++DGYCK ++ +A Y E+L L PNVV FG L+DG CK EL
Sbjct: 295 KIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKAREL 354
Query: 241 RAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNIL 300
AA + FVHM KFGV PN++VYNCLI G CK+GN+ EAM L SEME +SPDVFTY IL
Sbjct: 355 VAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTIL 414
Query: 301 IKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGV 360
I GLC +L A L Q+M E I + VTYNSLI G+CKE ++EKAL +CS+MT GV
Sbjct: 415 INGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGV 474
Query: 361 EPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLR 420
EPN++TFS+LIDG CK NI AAMGLY EM IK +VPDVV +T LID K+ NMKE LR
Sbjct: 475 EPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALR 534
Query: 421 LYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN----HVLY 476
LY +MLEA I P+ T + L+ G +K GR+S+A++F+LE G +V +
Sbjct: 535 LYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRSCWKYVGF 594
Query: 477 AAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536
+I+ LC +G IL+AS+ FSDM+S + PD +Y +ML+ LR KR+ D MML DMIK
Sbjct: 595 TCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSYVSMLKAHLREKRITDTMMLHCDMIK 654
Query: 537 MGIVPDAVINQVMVRGYQENGDLKSA 562
GI+P+ ++NQ++ YQENG L+SA
Sbjct: 655 TGILPNLMVNQLLAMFYQENGYLRSA 680
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507117|ref|XP_003522317.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g61400-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 277/508 (54%), Positives = 353/508 (69%), Gaps = 17/508 (3%)
Query: 81 LPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALN 140
+P +Q CNALL+GL+K FDS+WE Y +M+ V+TYG+L++CCC QGD A
Sbjct: 1 MPTLQPCNALLHGLVKTQMFDSLWEVYVDMMSRRFSPTVITYGILMNCCCAQGDFSNAQK 60
Query: 141 LFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVV-PNLYTYNALMDGY 199
+FDEM+++GIEP VVIY +M EAE +F MRE GVV PNLYTY LMDGY
Sbjct: 61 VFDEMLERGIEPNVVIY----------GQMGEAEGVFGRMRESGVVTPNLYTYKTLMDGY 110
Query: 200 CKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNI 259
+ DV R Y +ML L P+VVTF L+D L K+G+L+AA N F +MAKF V PN
Sbjct: 111 SMMGDVKRVFYLYCDMLKPGLYPDVVTFATLIDVLRKMGDLKAAXNCFAYMAKFDVVPNG 170
Query: 260 FVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQK 319
YN LI G+CKAG+L EAM L EME+ I DV TYNILIKGLC + +LE A GL++K
Sbjct: 171 HAYNSLIHGYCKAGDLLEAMWLRLEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEK 230
Query: 320 MYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGN 379
M + + AN V +N +IDG CK GDMEKA+ VCSQMTE+ +EPNV+TFS LIDG C GN
Sbjct: 231 MDEVEVFANSVXFNVVIDGCCKIGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGN 290
Query: 380 IDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSS 439
+ AAMGLYTEMVIK +VPDVV +TALIDG K GN KE RL+KEML+A ++P++FTVS
Sbjct: 291 VRAAMGLYTEMVIKGIVPDVVTYTALIDGHCKVGNTKEAFRLHKEMLDAGLSPNMFTVSC 350
Query: 440 LIHGLFKNGRISNALNFFLEKT------DKTDGGYCSPNHVLYAAIIQALCYDGQILKAS 493
+I GL K+GR ++A+ FLEKT DK D +CSPN ++YA +IQ LC DG I KA+
Sbjct: 351 VIDGLLKDGRTNDAIKMFLEKTGAGYPGDKMDSRFCSPNSMMYAILIQGLCEDGXIFKAT 410
Query: 494 KLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGY 553
K F++M+ + +PD Y TML+ ++K M+DVMML ADM+KMG++ + I +V+ RGY
Sbjct: 411 KFFAEMKWNGFKPDMLVYVTMLQAHFQSKHMIDVMMLHADMVKMGVIQNTFIYRVLSRGY 470
Query: 554 QENGDLKSAFRCSEFLKESRIGSSETEG 581
+ENG LKSA CSE+L E I E G
Sbjct: 471 RENGYLKSALMCSEYLMEYGIHFPECRG 498
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 237/434 (54%), Positives = 301/434 (69%), Gaps = 6/434 (1%)
Query: 1 IFYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLII 60
+ + L AK+Y ARCL KD+ + LL+S P V VFNAL+ L KFNPSVF LII
Sbjct: 68 VIHYLTGAKVYPTARCLTKDLIQTLLQSCTPRRVNSLVFNALSQLRGSKFNPSVFGVLII 127
Query: 61 AFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV 120
AFSE+G ++EAL VY K+ PA+QACNALLNGL+KK FD +WE Y MV L VV
Sbjct: 128 AFSEVGLVDEALRVYLKVGAFPAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVV 187
Query: 121 TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSM 180
TY VL+D CC QGDV++A +L EM+ KGIEPTVVIYT LIHGLC+E+K++EAESMFR M
Sbjct: 188 TYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQM 247
Query: 181 RECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGEL 240
++ GV PNLYTYN LMDGYCK A+V +AL Y ML LQPNVVTFG+L+D LCKV EL
Sbjct: 248 KDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVREL 307
Query: 241 RAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNIL 300
AA FFV MAKFGV PN+ V+N LIDG+ KAGN EA L EMEKF+ISPDVFTY+IL
Sbjct: 308 LAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSIL 367
Query: 301 IKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSV------CSQ 354
IK C +G +E A+ +L++M KEG+ AN V YNSLIDGYCKEG+MEKAL + S
Sbjct: 368 IKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSD 427
Query: 355 MTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGN 414
M G+ P+ + ++ ++ G A ++ M L+ +M+ +VP+ V + G +G
Sbjct: 428 MRRNGLRPDALAYAVMLQGHLNAKHMADVMMLHADMIKMGIVPNEVTSQVVRRGYQDNGY 487
Query: 415 MKETLRLYKEMLEA 428
+K L +++ E+
Sbjct: 488 LKSALWCSRDLTES 501
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/504 (44%), Positives = 318/504 (63%), Gaps = 21/504 (4%)
Query: 55 FSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCG 114
L+IA S+MG ++EAL+V+R++ LPA+ ACNA+L+GL+K + WE ++EM+ G
Sbjct: 122 LGVLVIALSQMGLLDEALYVFRRLRTLPALPACNAVLDGLVKARRPGCAWELFDEMLRRG 181
Query: 115 LVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAE 174
LV VVTY LI+ C QG V KA ++D+M+ + I+P VV YT +I LC E + +AE
Sbjct: 182 LVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCIGDAE 241
Query: 175 SMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGL 234
+F +M+E G+ PN YTYN LM G+C+ DVN A+ Y E+L L PN V F L+DG
Sbjct: 242 RLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGF 301
Query: 235 CKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDV 294
CK A F+ M +FGV P + VYN L+DG ++GN EA++L EM + + PD
Sbjct: 302 CKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDE 361
Query: 295 FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQ 354
FT +I+++GLC GQ+ A+ LQ + ++G+ N YN+LID YC+ G++E+AL+ C++
Sbjct: 362 FTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTR 421
Query: 355 MTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGN 414
MTE G+EPNVV++SSLIDG K G + AM +YTEMV K + P+VV +TALI G +K+G
Sbjct: 422 MTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGG 481
Query: 415 MKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCS---- 470
+ RL+KEM+E I+P+ TVS L+ GL + R+ A+ F +E + G CS
Sbjct: 482 IDAAFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFVMEYS----GLKCSDIHS 537
Query: 471 -------------PNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRG 517
PN V+Y +I L DGQ +A KLFS MR + PD+ TYT ++RG
Sbjct: 538 VFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRG 597
Query: 518 LLRAKRMLDVMMLLADMIKMGIVP 541
+L+ MML ADM+K+G+ P
Sbjct: 598 QCMLGYVLNAMMLYADMMKIGVKP 621
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor] gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/497 (43%), Positives = 315/497 (63%), Gaps = 13/497 (2%)
Query: 58 LIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVA 117
L+IA S+MG ++EAL+V+R++ LPA+ ACNA+L+GL+K + WE ++EM+ G+V
Sbjct: 117 LVIALSQMGLLDEALYVFRRLWTLPALPACNAVLDGLVKARRSRCAWELFDEMLRRGMVP 176
Query: 118 DVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMF 177
VVTY LI+ C QG V KA ++D+M+ + I+P V+ YT +I LC E + +AE +F
Sbjct: 177 SVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIGDAERLF 236
Query: 178 RSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKV 237
+M+E G+ PN YTYN LM G+C+ DVN A Y E+L+ L PN V F L+DG CK
Sbjct: 237 DAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKA 296
Query: 238 GELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTY 297
A + F M +FGV P + VYN L+DG ++G+ EA+SL EM + + PD FT
Sbjct: 297 KRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTC 356
Query: 298 NILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTE 357
+I+++GLC GQ++ A L+ + ++G+ N YN+LID YC+ G++E+AL+ C++MTE
Sbjct: 357 SIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTE 416
Query: 358 KGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKE 417
GVEPNVV++SSLIDG K G + AM +YTEMV K + P+VV +TALI G +K+G +
Sbjct: 417 VGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDA 476
Query: 418 TLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTD-------------KT 464
R +KEM+E I+P+ TVS L+ GL + R+ +A+ F +E + T
Sbjct: 477 AFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFVMEHSGIKYSDIHSFFSNFTT 536
Query: 465 DGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRM 524
+ PN +Y +I L DGQ +A KLFS MR + D+ TYT ++RG +
Sbjct: 537 EEEPLIPNSAIYMTLIYGLYLDGQHYEAGKLFSYMRKSGMISDSFTYTLLIRGQCMLGYV 596
Query: 525 LDVMMLLADMIKMGIVP 541
L+ MML ADM+K+G+ P
Sbjct: 597 LNAMMLYADMMKIGVKP 613
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| TAIR|locus:2163218 | 654 | AT5G61400 "AT5G61400" [Arabido | 0.922 | 0.853 | 0.530 | 3.1e-154 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.887 | 0.586 | 0.335 | 2.7e-77 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.914 | 0.609 | 0.320 | 5.1e-74 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.791 | 0.641 | 0.334 | 7.5e-73 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.842 | 0.830 | 0.313 | 9.6e-73 | |
| TAIR|locus:2177028 | 816 | AT5G12100 [Arabidopsis thalian | 0.952 | 0.705 | 0.290 | 3e-69 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.904 | 0.858 | 0.302 | 3.8e-69 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.836 | 0.803 | 0.304 | 4.9e-69 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.811 | 0.779 | 0.317 | 4.9e-69 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.788 | 0.826 | 0.316 | 6.3e-69 |
| TAIR|locus:2163218 AT5G61400 "AT5G61400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1504 (534.5 bits), Expect = 3.1e-154, P = 3.1e-154
Identities = 298/562 (53%), Positives = 384/562 (68%)
Query: 1 IFYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLII 60
+ +VL A Y ARCLIK + E L + +P ++ + +FNAL ++ PKF+ VFS LI+
Sbjct: 81 VIHVLTGAHKYTLARCLIKSLIERLKRHSEPSNMSHRLFNALEDIQSPKFSIGVFSLLIM 140
Query: 61 AFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV 120
F EMG EEALWV R+++ P +AC ++LNGL+++ +FDSVW Y+ M+ GLV DV
Sbjct: 141 EFLEMGLFEEALWVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVH 200
Query: 121 TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSM 180
Y VL CC QG K L DEM GI+P V IYTI I LC +NKM EAE MF M
Sbjct: 201 IYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELM 260
Query: 181 RECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGEL 240
++ GV+PNLYTY+A++DGYCK +V +A Y E+L L PNVV FG L+DG CK EL
Sbjct: 261 KKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKAREL 320
Query: 241 RAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNIL 300
A + FVHM KFGV PN++VYNCLI GHCK+GN+ EA+ L SEME +SPDVFTY IL
Sbjct: 321 VTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTIL 380
Query: 301 IKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGV 360
I GLC Q+ A L QKM E I + TYNSLI GYCKE +ME+AL +CS+MT GV
Sbjct: 381 INGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGV 440
Query: 361 EPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLR 420
EPN++TFS+LIDG C +I AAMGLY EM IK +VPDVV +TALID K+ NMKE LR
Sbjct: 441 EPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALR 500
Query: 421 LYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAII 480
LY +MLEA I P+ T + L+ G +K GR+S A++F+ E + C NHV + +I
Sbjct: 501 LYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRS---CW-NHVGFTCLI 556
Query: 481 QALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIV 540
+ LC +G IL+AS+ FSDMRS + PD C+Y +ML+G L+ KR+ D MML DMIK GI+
Sbjct: 557 EGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGIL 616
Query: 541 PDAVINQVMVRGYQENGDLKSA 562
P+ ++NQ++ R YQ NG +KSA
Sbjct: 617 PNLLVNQLLARFYQANGYVKSA 638
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 184/548 (33%), Positives = 282/548 (51%)
Query: 55 FSTLIIAFSEMGHIEEALWVYRKI---EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMV 111
++TL+ + + G ++E VY ++ +V P I N ++NG K G + ++ ++V
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 112 LCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMV 171
GL D TY LI C + D+ A +F+EM KG V YT LIHGLC ++
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 172 EAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLM 231
EA +F M++ P + TY L+ C + AL EM ++PN+ T+ VL+
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365
Query: 232 DGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEIS 291
D LC + A M + G+ PN+ YN LI+G+CK G + +A+ + ME ++S
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLS 425
Query: 292 PDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSV 351
P+ TYN LIKG C + A G+L KM + +L +VVTYNSLIDG C+ G+ + A +
Sbjct: 426 PNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRL 484
Query: 352 CSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSK 411
S M ++G+ P+ T++S+ID CK+ ++ A L+ + K + P+VV++TALIDG K
Sbjct: 485 LSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCK 544
Query: 412 DGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSP 471
G + E + ++ML P+ T ++LIHGL +G++ A EK K P
Sbjct: 545 AGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEA-TLLEEKMVKIG---LQP 600
Query: 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLL 531
+I L DG A F M S +PD TYTT ++ R R+LD ++
Sbjct: 601 TVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMM 660
Query: 532 ADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTRSFLGHL 591
A M + G+ PD +++GY + G AF + LK R E HT S + HL
Sbjct: 661 AKMRENGVSPDLFTYSSLIKGYGDLGQTNFAF---DVLKRMRDTGCEPSQHTFLSLIKHL 717
Query: 592 KPTVYKEQ 599
Y +Q
Sbjct: 718 LEMKYGKQ 725
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 182/568 (32%), Positives = 291/568 (51%)
Query: 1 IFYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLII 60
+ + L A L+ A L++ + LL++ KP V +F+ ++ + S F LI
Sbjct: 110 LIHALVKANLFWPASSLLQTL---LLRALKPSDVFNVLFSCYEKCKLS--SSSSFDLLIQ 164
Query: 61 AFSEMGHIEEALWVYR----KIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLV 116
+ + + + V++ K+ +LP ++ +ALL+GL+K F E + +MV G+
Sbjct: 165 HYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIR 224
Query: 117 ADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESM 176
DV Y +I C D+ +A + M G + +V Y +LI GLC + K+ EA +
Sbjct: 225 PDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGI 284
Query: 177 FRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCK 236
+ + + P++ TY L+ G CKV + LE EML P+ L++GL K
Sbjct: 285 KKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRK 344
Query: 237 VGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFT 296
G++ A N + FGV PN+FVYN LID CK EA L M K + P+ T
Sbjct: 345 RGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVT 404
Query: 297 YNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMT 356
Y+ILI C G+L+ A L +M G+ +V YNSLI+G+CK GD+ A ++M
Sbjct: 405 YSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMI 464
Query: 357 EKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMK 416
K +EP VVT++SL+ G C G I+ A+ LY EM K + P + FT L+ GL + G ++
Sbjct: 465 NKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIR 524
Query: 417 ETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLY 476
+ ++L+ EM E + P+ T + +I G + G +S A F E T+K G P+ Y
Sbjct: 525 DAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEK---GIV-PDTYSY 580
Query: 477 AAIIQALCYDGQILKASKLFSD-MRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMI 535
+I LC GQ +A K+F D + N + YT +L G R ++ + + + +M+
Sbjct: 581 RPLIHGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMV 639
Query: 536 KMGIVPDAVINQVMVRGYQENGDLKSAF 563
+ G+ D V V++ G ++ D K F
Sbjct: 640 QRGVDLDLVCYGVLIDGSLKHKDRKLFF 667
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 164/490 (33%), Positives = 255/490 (52%)
Query: 79 EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKA 138
+V P + N L+ G G D +++M G + +VVTY LID C +
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 139 LNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDG 198
L M KG+EP ++ Y ++I+GLC E +M E + M G + TYN L+ G
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 199 YCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPN 258
YCK + ++AL + EML H L P+V+T+ L+ +CK G + A F M G+ PN
Sbjct: 320 YCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPN 379
Query: 259 IFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQ 318
Y L+DG + G + EA + EM SP V TYN LI G C G++E A +L+
Sbjct: 380 ERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLE 439
Query: 319 KMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG 378
M ++G+ +VV+Y++++ G+C+ D+++AL V +M EKG++P+ +T+SSLI G C+
Sbjct: 440 DMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQR 499
Query: 379 NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVS 438
A LY EM+ L PD +TALI+ +G++++ L+L+ EM+E + P V T S
Sbjct: 500 RTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYS 559
Query: 439 SLIHGLFKNGRISNA----LNFFLEKTDKTDGGY------CSP-NHVLYAAIIQALCYDG 487
LI+GL K R A L F E++ +D Y CS ++I+ C G
Sbjct: 560 VLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKG 619
Query: 488 QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQ 547
+ +A ++F M N +PD Y M+ G RA + L +M+K G + V
Sbjct: 620 MMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVI 679
Query: 548 VMVRGYQENG 557
+V+ + G
Sbjct: 680 ALVKALHKEG 689
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 162/516 (31%), Positives = 275/516 (53%)
Query: 77 KIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVM 136
K P+I + LL+ + K KFD V F E+M + G+ ++ TY ++I+C C + +
Sbjct: 58 KSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLS 117
Query: 137 KALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALM 196
AL + +M+ G P++V L++G C+ N++ EA ++ M E G P+ T+ L+
Sbjct: 118 FALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLV 177
Query: 197 DGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVF 256
G + + A+ M+ QP++VT+G +++GLCK GE A N M K +
Sbjct: 178 HGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE 237
Query: 257 PNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGL 316
++ +Y+ +ID CK ++ +A++L +EM+ I PDVFTY+ LI LC G+ A L
Sbjct: 238 ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 297
Query: 317 LQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK 376
L M + I NVVT+NSLID + KEG + +A + +M ++ ++PN+VT++SLI+G C
Sbjct: 298 LSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCM 357
Query: 377 AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFT 436
+D A ++T MV K +PDVV + LI+G K + + + L+++M + + T
Sbjct: 358 HDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVT 417
Query: 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLF 496
++LIHG F+ NA F + +DG + PN + Y ++ LC +G++ KA +F
Sbjct: 418 YTTLIHGFFQASDCDNAQMVFKQMV--SDGVH--PNIMTYNTLLDGLCKNGKLEKAMVVF 473
Query: 497 SDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQEN 556
++ + PD TY M G+ +A ++ D L + G+ PD + M+ G+ +
Sbjct: 474 EYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKK 533
Query: 557 GDLKSAFRCSEFLKESRIGSSETEGHTTRSFLGHLK 592
G + A+ F+K G G HL+
Sbjct: 534 GLKEEAYTL--FIKMKEDGPLPDSGTYNTLIRAHLR 567
|
|
| TAIR|locus:2177028 AT5G12100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 174/598 (29%), Positives = 311/598 (52%)
Query: 1 IFYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVF--STL 58
+F+ L N +Y ++ L + ++L+K+ K V +VF LN LE F PS F
Sbjct: 131 LFFALRNEGIYPSSDSLTL-LLDHLVKT-KQFRVTINVF--LNILE-SDFRPSKFMYGKA 185
Query: 59 IIAFSEMGHIEEALWVYRKIE---VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGL 115
I A ++ + + L ++ +++ + P++ N L++GL K + + + ++EM+ L
Sbjct: 186 IQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRL 245
Query: 116 VADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAES 175
+ ++TY LID C G+ K+ + + M IEP+++ + L+ GL + +AE+
Sbjct: 246 LPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAEN 305
Query: 176 MFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLC 235
+ + M++ G VP+ +T++ L DGY AL Y + ++ N T +L++ LC
Sbjct: 306 VLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALC 365
Query: 236 KVGELRAAGNFFVH-MAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDV 294
K G++ A MAK G+ PN +YN +IDG+C+ G+L A MEK + PD
Sbjct: 366 KEGKIEKAEEILGREMAK-GLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDH 424
Query: 295 FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQ 354
YN LI+ C +G++E AE + KM +G+ +V TYN LI GY ++ + +K + +
Sbjct: 425 LAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKE 484
Query: 355 MTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGN 414
M + G PNVV++ +LI+ CK + A + +M + + P V ++ LIDG G
Sbjct: 485 MEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGK 544
Query: 415 MKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHV 474
+++ R KEML+ I ++ T ++LI GL G++S A + LE + K G P+
Sbjct: 545 IEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRK--G--LKPDVF 600
Query: 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADM 534
Y ++I + G + + L+ +M+ ++P TY ++ L K +++ L
Sbjct: 601 TYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLIS--LCTKEGIELTERLFG- 657
Query: 535 IKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTRSFLGHLK 592
+M + PD ++ ++ Y +GD++ AF + + E IG +T ++ LG LK
Sbjct: 658 -EMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSL--ILGQLK 712
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
Identities = 169/559 (30%), Positives = 279/559 (49%)
Query: 52 PSV--FSTLIIAFSEMGHIEEALWVYRKIE---VLPAIQACNALLNGLIKKGKFDSVWEF 106
P+V FS L A ++ + L + +++E + + + ++N + K +
Sbjct: 86 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145
Query: 107 YEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCN 166
+++ G + +T+ LI+ C +G V +AL L D M++ G +P ++ L++GLC
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205
Query: 167 ENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVT 226
K EA + M E G PN TY +++ CK A+E +M N++ + V
Sbjct: 206 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 227 FGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEME 286
+ +++DGLCK G L A N F M G+ NI YN LI G C AG + L +M
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325
Query: 287 KFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDME 346
K +I+P+V T+++LI G+L AE L ++M GI + +TY SLIDG+CKE ++
Sbjct: 326 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 385
Query: 347 KALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALI 406
KA + M KG +PN+ TF+ LI+G CKA ID + L+ +M ++ +V D V + LI
Sbjct: 386 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 445
Query: 407 DGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDG 466
G + G + L++EM+ K+ P++ T L+ GL NG AL F EK +K+
Sbjct: 446 QGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIF-EKIEKSK- 503
Query: 467 GYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLD 526
+ +Y II +C ++ A LF + ++P TY M+ GL + + +
Sbjct: 504 --MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSE 561
Query: 527 VMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTRS 586
+L M + G PD +++R + +GD + + E LK R G S + T +
Sbjct: 562 AELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELK--RCGFS-VDASTIKM 618
Query: 587 FLGHLKPTVYKEQDLSICS 605
+ L K+ L + S
Sbjct: 619 VIDMLSDGRLKKSFLDMLS 637
|
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| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 157/515 (30%), Positives = 274/515 (53%)
Query: 77 KIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVM 136
K P+I + LL+ + K KFD V E+M G+ ++ TY +LI+C C + +
Sbjct: 74 KSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLS 133
Query: 137 KALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALM 196
AL + +M+ G EP +V L++G C+ N++ +A S+ M E G P+ +T+N L+
Sbjct: 134 LALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLI 193
Query: 197 DGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVF 256
G + + A+ M+ QP++VT+G++++GLCK G++ A + M + +
Sbjct: 194 HGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIE 253
Query: 257 PNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGL 316
P + +YN +ID C N+ +A++L +EM+ I P+V TYN LI+ LC G+ A L
Sbjct: 254 PGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 313
Query: 317 LQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK 376
L M + I NVVT+++LID + KEG + +A + +M ++ ++P++ T+SSLI+G C
Sbjct: 314 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 373
Query: 377 AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFT 436
+D A ++ M+ K P+VV + LI G K + E + L++EM + + + T
Sbjct: 374 HDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVT 433
Query: 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLF 496
++LIHG F+ NA F + +DG P+ + Y+ ++ LC +G++ A +F
Sbjct: 434 YTTLIHGFFQARECDNAQIVFKQMV--SDG--VLPDIMTYSILLDGLCNNGKVETALVVF 489
Query: 497 SDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQEN 556
++ + PD TY M+ G+ +A ++ D L + G+ P+ V M+ G+
Sbjct: 490 EYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 549
Query: 557 G---DLKSAFRCSEFLKESRIGSSETEGHTTRSFL 588
G + + FR E +E + S T R+ L
Sbjct: 550 GLKEEADALFR--EMKEEGPLPDSGTYNTLIRAHL 582
|
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| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 157/495 (31%), Positives = 262/495 (52%)
Query: 77 KIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVM 136
K P+I + LL+ + K KFD V E+M G+ + TY +LI+C C + +
Sbjct: 74 KSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLP 133
Query: 137 KALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALM 196
AL + +M+ G EP +V + L++G C+ ++ EA ++ M G PN T+N L+
Sbjct: 134 LALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLI 193
Query: 197 DGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVF 256
G + A+ M+ QP++VT+GV+++GLCK G+ A N M + +
Sbjct: 194 HGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE 253
Query: 257 PNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGL 316
P + +YN +IDG CK ++ +A++L EME I P+V TY+ LI LC G+ A L
Sbjct: 254 PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313
Query: 317 LQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK 376
L M + I +V T+++LID + KEG + +A + +M ++ ++P++VT+SSLI+G C
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373
Query: 377 AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFT 436
+D A ++ MV K PDVV + LI G K ++E + +++EM + + + T
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 433
Query: 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLF 496
+ LI GLF+ G A F E +DG PN + Y ++ LC +G++ KA +F
Sbjct: 434 YNILIQGLFQAGDCDMAQEIFKEMV--SDG--VPPNIMTYNTLLDGLCKNGKLEKAMVVF 489
Query: 497 SDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQEN 556
++ + P TY M+ G+ +A ++ D L ++ G+ PD V M+ G+
Sbjct: 490 EYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRK 549
Query: 557 GDLKSAFRCSEFLKE 571
G + A + +KE
Sbjct: 550 GSKEEADALFKEMKE 564
|
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| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 152/481 (31%), Positives = 259/481 (53%)
Query: 77 KIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVM 136
K LP+I N LL+ + K KFD V E+M G+ ++ TY +LI+C C + +
Sbjct: 78 KSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQIS 137
Query: 137 KALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALM 196
AL L +M+ G EP++V + L++G C+ ++ +A ++ M E G P+ T+ L+
Sbjct: 138 LALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLI 197
Query: 197 DGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVF 256
G + A+ M+ QPN+VT+GV+++GLCK G++ A N M +
Sbjct: 198 HGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE 257
Query: 257 PNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGL 316
N+ +Y+ +ID CK + +A++L +EME + P+V TY+ LI LC + A L
Sbjct: 258 ANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRL 317
Query: 317 LQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK 376
L M + I NVVT+N+LID + KEG + +A + +M ++ ++P++ T+SSLI+G C
Sbjct: 318 LSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 377
Query: 377 AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFT 436
+D A ++ M+ K P+VV + LI+G K + E + L++EM + + + T
Sbjct: 378 HDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVT 437
Query: 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLF 496
++LIHG F+ NA F + +DG + PN + Y ++ LC +G++ KA +F
Sbjct: 438 YTTLIHGFFQARDCDNAQMVFKQMV--SDGVH--PNIMTYNTLLDGLCKNGKLEKAMVVF 493
Query: 497 SDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQEN 556
++ + P TY M+ G+ +A ++ D L + G+ PD +I M+ G+
Sbjct: 494 EYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRK 553
Query: 557 G 557
G
Sbjct: 554 G 554
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FLJ4 | PP440_ARATH | No assigned EC number | 0.5284 | 0.9223 | 0.8532 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00016304001 | SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (1003 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 605 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-42 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-29 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-25 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-25 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-23 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-09 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (413), Expect = 4e-42
Identities = 119/458 (25%), Positives = 209/458 (45%), Gaps = 48/458 (10%)
Query: 92 NGLIKKGKFDSVWEFYEEMVLCGLVA-DVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGI 150
N L++ G+ + E+M GL+ D + + C Q V +A F ++I
Sbjct: 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFR-FAKLIR--- 433
Query: 151 EPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALE 210
PT+ + +L+ + + A + R ++E G+ + Y L+ K V+ E
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
Query: 211 FYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHC 270
+HEM++ ++ NV TFG L+DG + G++ A + M V P+ V+N LI
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 271 KAGNLFEAMSLCSEM--EKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILAN 328
++G + A + +EM E I PD T L+K GQ++ A+ + Q +++ I
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 329 VVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYT 388
Y ++ ++GD + ALS+ M +KGV+P+ V FS+L+D AG++D A +
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 389 EMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG 448
+ + + V +++L+ S N K+ L LY+++ K+ P+V T
Sbjct: 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST------------ 721
Query: 449 RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN 508
A+I ALC Q+ KA ++ S+M+ L P+
Sbjct: 722 ---------------------------MNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754
Query: 509 CTYTTMLRGLLRAKRMLDV-MMLLADMIKMGIVPDAVI 545
TY+ +L R K DV + LL+ + GI P+ V+
Sbjct: 755 ITYSILLVASER-KDDADVGLDLLSQAKEDGIKPNLVM 791
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-29
Identities = 93/408 (22%), Positives = 166/408 (40%), Gaps = 60/408 (14%)
Query: 96 KKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCC-------------------------- 129
K GK D+++E + EMV G+ A+V T+G LID C
Sbjct: 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543
Query: 130 --------CGQ-GDVMKALNLFDEMI--DKGIEPTVVIYTILIHGLCNENKMVEAESMFR 178
CGQ G V +A ++ EM I+P + L+ N ++ A+ +++
Sbjct: 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 179 SMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVG 238
+ E + Y ++ + D + AL Y +M ++P+ V F L+D G
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663
Query: 239 ELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYN 298
+L A K G+ Y+ L+ A N +A+ L +++ ++ P V T N
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723
Query: 299 ILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEK 358
LI LC QL A +L +M + G+ N +TY+ L+ ++ D + L + SQ E
Sbjct: 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783
Query: 359 GVEPNVVTFSSLI-------DGQCKAGNI----------------DAAMGLYTEMVIKSL 395
G++PN+V + + C G A+ +Y E +
Sbjct: 784 GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843
Query: 396 VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHG 443
+P + V + ++ L + RL + + + + +S+L+ G
Sbjct: 844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-25
Identities = 90/357 (25%), Positives = 164/357 (45%), Gaps = 15/357 (4%)
Query: 53 SVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVL 112
SV ++LI + +G EA V+ ++E A+ + A+++G K G D E Y M
Sbjct: 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV-SWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 113 CGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVE 172
+ D +T ++ C GD+ + L + KG+ VV+ LI + +
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442
Query: 173 AESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMD 232
A +F ++ E V+ ++ +++ G AL F+ +ML L+PN VT +
Sbjct: 443 ALEVFHNIPEKDVI----SWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALS 497
Query: 233 GLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISP 292
++G L H+ + G+ + F+ N L+D + + G + A + + EK
Sbjct: 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK----- 552
Query: 293 DVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVC 352
DV ++NIL+ G G+ A L +M + G+ + VT+ SL+ + G + + L
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612
Query: 353 SQMTEK-GVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDG 408
M EK + PN+ ++ ++D +AG + A +M I PD V+ AL++
Sbjct: 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT---PDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 2e-25
Identities = 92/402 (22%), Positives = 164/402 (40%), Gaps = 53/402 (13%)
Query: 94 LIKKGKFDSVWEFYEEMVL-CGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEP 152
L+ G+ E +E + C TY L++ C + ++ + G EP
Sbjct: 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156
Query: 153 TVVIYT--ILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALE 210
+ +L+H C +++A +F M E NL ++ ++ G + A
Sbjct: 157 DQYMMNRVLLMHVKC--GMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFA 210
Query: 211 FYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHC 270
+ EM TF V++ +G RA + K GV + FV LID +
Sbjct: 211 LFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270
Query: 271 KAGNL------F-------------------------EAMSLCSEMEKFEISPDVFTYNI 299
K G++ F EA+ L EM +S D FT++I
Sbjct: 271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330
Query: 300 LIKGLCGVGQLEGAE----GLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQM 355
+I+ + LE A+ GL++ + I+AN +L+D Y K G ME A +V +M
Sbjct: 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN----TALVDLYSKWGRMEDARNVFDRM 386
Query: 356 TEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNM 415
K N++++++LI G G A+ ++ M+ + + P+ V F A++ G
Sbjct: 387 PRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442
Query: 416 KETLRLYKEMLEA-KITPSVFTVSSLIHGLFKNGRISNALNF 456
++ +++ M E +I P + +I L + G + A
Sbjct: 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 4e-25
Identities = 112/521 (21%), Positives = 210/521 (40%), Gaps = 57/521 (10%)
Query: 88 NALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMID 147
N L+ G K G FD Y M+ G+ DV T+ ++ C G D+ + + ++
Sbjct: 156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215
Query: 148 KGIEPTVVIYTILIHGLCNENKMVEAESMFRSM--RECGVVPNLYTYNALMDGYCKVADV 205
G E V + LI +V A +F M R+C ++NA++ GY + +
Sbjct: 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC------ISWNAMISGYFENGEC 269
Query: 206 NRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCL 265
LE + M ++ P+++T ++ +G+ R ++ K G ++ V N L
Sbjct: 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329
Query: 266 IDGHCKAGNLFEAMSLCSEMEKFEI-------------------------------SPDV 294
I + G+ EA + S ME + SPD
Sbjct: 330 IQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389
Query: 295 FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQ 354
T ++ +G L+ L + ++G+++ VV N+LI+ Y K ++KAL V
Sbjct: 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449
Query: 355 MTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGN 414
+ EK +V++++S+I G A+ + +M + +L P+ V A + ++ G
Sbjct: 450 IPEK----DVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGA 504
Query: 415 MKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHV 474
+ ++ +L I F ++L+ + GR++ A N F + V
Sbjct: 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF---------NSHEKDVV 555
Query: 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADM 534
+ ++ G+ A +LF+ M + PD T+ ++L R+ + + M
Sbjct: 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615
Query: 535 -IKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRI 574
K I P+ +V G L A+ F+ + I
Sbjct: 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAY---NFINKMPI 653
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-23
Identities = 94/423 (22%), Positives = 181/423 (42%), Gaps = 34/423 (8%)
Query: 133 GDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTY 192
G+++ A +F +M E + + +L+ G EA ++ M GV P++YT+
Sbjct: 135 GELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTF 190
Query: 193 NALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAK 252
++ + D+ R E + ++ + +V L+ K G++ +A F M +
Sbjct: 191 PCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR 250
Query: 253 FGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEG 312
+ +N +I G+ + G E + L M + + PD+ T +I C L G
Sbjct: 251 ----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA-CE---LLG 302
Query: 313 AEGLLQKMY----KEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFS 368
E L ++M+ K G +V NSLI Y G +A V S+M K + V+++
Sbjct: 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWT 358
Query: 369 SLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA 428
++I G K G D A+ Y M ++ PD + +++ + G++ ++L++
Sbjct: 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418
Query: 429 KITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ 488
+ V ++LI K I AL F +K + + + +II L + +
Sbjct: 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK--------DVISWTSIIAGLRLNNR 470
Query: 489 ILKASKLFSDMRSDNLRPDNCTYTTMLR-----GLLRAKRMLDVMMLLADMIKMGIVPDA 543
+A F M L+P++ T L G L + + +L + G +P+A
Sbjct: 471 CFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529
Query: 544 VIN 546
+++
Sbjct: 530 LLD 532
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 78.2 bits (194), Expect = 3e-18
Identities = 29/49 (59%), Positives = 42/49 (85%)
Query: 328 NVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK 376
+VVTYN+LIDGYCK+G +E+AL + ++M ++G++PNV T+S LIDG CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 1e-17
Identities = 27/49 (55%), Positives = 37/49 (75%)
Query: 257 PNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLC 305
P++ YN LIDG+CK G + EA+ L +EM+K I P+V+TY+ILI GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 74.7 bits (185), Expect = 5e-17
Identities = 28/50 (56%), Positives = 32/50 (64%)
Query: 292 PDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCK 341
PDV TYN LI G C G++E A L +M K GI NV TY+ LIDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 7e-17
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 152 PTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCK 201
P VV Y LI G C + K+ EA +F M++ G+ PN+YTY+ L+DG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 2e-16
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 187 PNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCK 236
P++ TYN L+DGYCK V AL+ ++EM ++PNV T+ +L+DGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 4e-16
Identities = 82/364 (22%), Positives = 154/364 (42%), Gaps = 65/364 (17%)
Query: 161 IHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNL 220
+ LC+ ++ +A + SM+E V + Y AL ++ + RA+E +
Sbjct: 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALF----RLCEWKRAVE-EGSRVCSRA 112
Query: 221 QPNVVTFGV-----LMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNL 275
+ + GV ++ + GEL A F M + ++F +N L+ G+ KAG
Sbjct: 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYF 168
Query: 276 FEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSL 335
EA+ L M + PDV+T+ +++ G+ L +E + A+VV +
Sbjct: 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL--------ARGRE-VHAHVVRF--- 216
Query: 336 IDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSL 395
G E +V ++LI K G++ +A ++ M +
Sbjct: 217 -----------------------GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR-- 251
Query: 396 VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH--GLFKNGRISNA 453
D + + A+I G ++G E L L+ M E + P + T++S+I L + R+
Sbjct: 252 --DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309
Query: 454 LNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTT 513
++ ++ KT G+ + + ++IQ G +A K+FS M D ++T
Sbjct: 310 MHGYVVKT-----GFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359
Query: 514 MLRG 517
M+ G
Sbjct: 360 MISG 363
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 4e-16
Identities = 28/49 (57%), Positives = 34/49 (69%)
Query: 118 DVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCN 166
DVVTY LID C +G V +AL LF+EM +GI+P V Y+ILI GLC
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 5e-14
Identities = 79/347 (22%), Positives = 141/347 (40%), Gaps = 37/347 (10%)
Query: 224 VVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCS 283
T+ L++ + +R + H+ G P+ ++ N ++ H K G L +A L
Sbjct: 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182
Query: 284 EMEKFEISPD--VFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCK 341
EM P+ + ++ +I GL G A L ++M+++G A T+ ++
Sbjct: 183 EM------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236
Query: 342 EGDME--KALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDV 399
G + L C T GV + +LID K G+I+ A ++ M K+
Sbjct: 237 LGSARAGQQLHCCVLKT--GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT----T 290
Query: 400 VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLE 459
V + +++ G + G +E L LY EM ++ ++ FT S +I RI + L LE
Sbjct: 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI-------RIFSRLA-LLE 342
Query: 460 KTDKTDGGYCSPNH----VLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTML 515
+ G V A++ G++ A +F M NL ++ ++
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALI 398
Query: 516 RGLLRAKRMLDVMMLLADMIKMGIVPD-----AVINQVMVRGYQENG 557
G R + + MI G+ P+ AV++ G E G
Sbjct: 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 1e-13
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 362 PNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSK 411
P+VVT+++LIDG CK G ++ A+ L+ EM + + P+V ++ LIDGL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 5e-13
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 222 PNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCK 271
P+VVT+ L+DG CK G++ A F M K G+ PN++ Y+ LIDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 1e-12
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 397 PDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFK 446
PDVV + LIDG K G ++E L+L+ EM + I P+V+T S LI GL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 2e-11
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 82 PAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCC 130
P + N L++G KKGK + + + EM G+ +V TY +LID C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 1e-10
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 471 PNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGL 518
P+ V Y +I C G++ +A KLF++M+ ++P+ TY+ ++ GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 9e-10
Identities = 67/316 (21%), Positives = 138/316 (43%), Gaps = 26/316 (8%)
Query: 46 EIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI----------EVLPAIQACNALLNGLI 95
E+P+ N + + T+I + G+ EA ++R++ + ++A L G
Sbjct: 183 EMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL--GSA 240
Query: 96 KKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVV 155
+ G+ + + ++ G+V D LID GD+ A +FD M +K T V
Sbjct: 241 RAGQ-----QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTV 291
Query: 156 IYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEM 215
+ ++ G EA ++ MR+ GV + +T++ ++ + ++A + A + + +
Sbjct: 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351
Query: 216 LHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNL 275
+ ++V L+D K G + A N F M + N+ +N LI G+ G
Sbjct: 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRG 407
Query: 276 FEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYK-EGILANVVTYNS 334
+A+ + M ++P+ T+ ++ G E + Q M + I + Y
Sbjct: 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467
Query: 335 LIDGYCKEGDMEKALS 350
+I+ +EG +++A +
Sbjct: 468 MIELLGREGLLDEAYA 483
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.5 bits (130), Expect = 1e-09
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 324 GILANVVTYNSLIDGYCKEGDMEKALSVCSQM 355
G+ +VVTYN+LIDG C+ G +++A+ + +M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.5 bits (130), Expect = 1e-09
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 358 KGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMV 391
KG++P+VVT+++LIDG C+AG +D A+ L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 8e-09
Identities = 20/35 (57%), Positives = 28/35 (80%)
Query: 330 VTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNV 364
VTYN+LIDG CK G +E+AL + +M E+G+EP+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 54 VFSTLIIAFSEMGHIEEALWVYRKIEVL---PAIQACNALLNGLIKKGKFDSVWEFYEEM 110
+S+L+ A S + ++AL +Y I+ + P + NAL+ L + + E EM
Sbjct: 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
Query: 111 VLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLC 165
GL + +TY +L+ + D L+L + + GI+P +V+ + GLC
Sbjct: 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 2e-08
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 253 FGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEME 286
G+ P++ YN LIDG C+AG + EA+ L EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 2e-08
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 148 KGIEPTVVIYTILIHGLCNENKMVEAESMFRSMR 181
KG++P VV Y LI GLC ++ EA + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 7e-08
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 184 GVVPNLYTYNALMDGYCKVADVNRALEFYHEM 215
G+ P++ TYN L+DG C+ V+ A+E EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 8e-08
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 330 VTYNSLIDGYCKEGDMEKALSVCSQMTEKGV 360
VTYNSLI GYCK G +E+AL + +M EKGV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-07
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 290 ISPDVFTYNILIKGLCGVGQLEGAEGLLQKM 320
+ PDV TYN LI GLC G+++ A LL +M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 6e-07
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 155 VIYTILIHGLCNENKMVEAESMFRSMRECGVVPN 188
V Y LI GLC ++ EA +F+ M+E G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 6e-07
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 120 VTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTV 154
VTY LID C G V +AL LF EM ++GIEP V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 7e-07
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 506 PDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGY 553
PD TY T++ G + ++ + + L +M K GI P+ +++ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 1e-06
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 114 GLVADVVTYGVLIDCCCGQGDVMKALNLFDEM 145
GL DVVTY LID C G V +A+ L DEM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 190 YTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNV 224
TYN L+DG CK V ALE + EM ++P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-06
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 329 VVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEP 362
+ TYN+L+ K GD + AL+V +M G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 260 FVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDV 294
YN LIDG CKAG + EA+ L EM++ I PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 509 CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDA 543
TY T++ GL +A R+ + + L +M + GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 120 VTYGVLIDCCCGQGDVMKALNLFDEMIDKGI 150
VTY LI C G + +AL LF EM +KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 155 VIYTILIHGLCNENKMVEAESMFRSMRECGV 185
V Y LI G C K+ EA +F+ M+E GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (96), Expect = 4e-05
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 393 KSLVPDVVVFTALIDGLSKDGNMKETLRLYKEM 425
K L PDVV + LIDGL + G + E + L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-05
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 400 VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSV 434
V + LIDGL K G ++E L L+KEM E I P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 9e-05
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 295 FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANV 329
TYN LI GLC G++E A L ++M + GI +V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 365 VTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDV 399
VT+++LIDG CKAG ++ A+ L+ EM + + PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 260 FVYNCLIDGHCKAGNLFEAMSLCSEMEKFEI 290
YN LI G+CKAG L EA+ L EM++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 1e-04
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 189 LYTYNALMDGYCKVADVNRALEFYHEMLHHNLQP 222
L TYNAL+ K D + AL EM L+P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 219 NLQPNVVTFGVLMDGLCKVGELRAAGNFFVHM 250
L+P+VVT+ L+DGLC+ G + A M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 119 VVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEP 152
+ TY L+ GD AL + +EM G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 295 FTYNILIKGLCGVGQLEGAEGLLQKMYKEGI 325
TYN LI G C G+LE A L ++M ++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 6e-04
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 190 YTYNALMDGYCKVADVNRALEFYHEMLHHNL 220
TYN+L+ GYCK + ALE + EM +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 86 ACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADV 119
N L++GL K G+ + E ++EM G+ DV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 400 VVFTALIDGLSKDGNMKETLRLYKEMLEAKI 430
V + +LI G K G ++E L L+KEM E +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.001
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 259 IFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISP 292
+ YN L+ KAG+ A+++ EM+ + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.002
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 469 CSPNHVLYAAIIQALCYDGQILKASKLFSDMR 500
P+ V Y +I LC G++ +A +L +M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.003
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 430 ITPSVFTVSSLIHGLFKNGRISNALNFF 457
+ P V T ++LI GL + GR+ A+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 399 VVVFTALIDGLSKDGNMKETLRLYKEMLEAKITP 432
+ + AL+ L+K G+ L + +EM + + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.98 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.9 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.89 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.89 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.88 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.86 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.86 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.86 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.85 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.76 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.75 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.75 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.73 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.73 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.73 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.72 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.72 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.7 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.7 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.7 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.67 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.66 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.65 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.65 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.64 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.63 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.62 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.62 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.59 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.59 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.57 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.56 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.54 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.54 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.53 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.52 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.51 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.51 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.5 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.5 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.49 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.48 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.47 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.42 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.41 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.39 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.37 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.33 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.33 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.32 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.31 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.3 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.26 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.26 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.26 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.23 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.23 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.2 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.19 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.17 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.16 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.13 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.12 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.11 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.08 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.08 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.06 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.06 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.02 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.01 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.01 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.01 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.99 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.99 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.96 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.92 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.89 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.87 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.87 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.83 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.81 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.8 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.78 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.74 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.74 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.73 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.72 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.71 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.71 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.71 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.7 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.67 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.65 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.59 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.54 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.51 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.5 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.42 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.4 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.4 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.4 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.39 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.38 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.37 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.34 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.31 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.28 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.27 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.23 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.2 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.2 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.18 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.18 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.17 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.16 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.16 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.14 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.12 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.11 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.09 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.05 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.04 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.03 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.03 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.01 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.0 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.98 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.96 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.96 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.95 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.92 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.87 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.86 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.85 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.84 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.83 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.82 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.81 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.8 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.8 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.78 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.77 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.74 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.73 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.71 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.69 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.68 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.68 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.68 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.68 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.67 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.65 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.62 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.61 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.61 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.6 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.58 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.58 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.53 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.53 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.47 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.47 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.43 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.43 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.38 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.35 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.34 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.33 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.32 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.31 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.27 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.25 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.23 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.21 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.2 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.19 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.17 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.16 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.15 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.14 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.09 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.05 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.0 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.0 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.99 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.96 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.93 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.92 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.89 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.87 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.86 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.86 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.83 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.82 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.77 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.72 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.72 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.67 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.66 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.64 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.59 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.59 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.58 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.54 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 96.49 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.43 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.42 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.41 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.4 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.39 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.39 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.37 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.32 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.99 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.92 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.91 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.87 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.87 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.84 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.79 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.76 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.74 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.73 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.7 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.67 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.66 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.62 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.58 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.53 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.51 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.44 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.43 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.42 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.41 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.41 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.4 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.34 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.08 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.07 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.57 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 94.44 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 94.44 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 94.26 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.13 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.06 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 93.99 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.96 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.83 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 93.72 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 93.66 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.66 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.59 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.36 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.33 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.32 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.29 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.13 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 93.02 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.94 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.91 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.77 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.72 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.68 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 92.68 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.65 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.63 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.38 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.3 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.25 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.24 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.08 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.83 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 91.7 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.62 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.42 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.35 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.3 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.11 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.9 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.79 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.36 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.35 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.22 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.14 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.1 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.01 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.94 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.81 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.25 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.24 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 89.1 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.05 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.01 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.95 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 88.78 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 88.61 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 88.57 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.31 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.14 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.88 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.8 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.74 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.69 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.41 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.33 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 87.25 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.99 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.99 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 86.72 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.47 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.36 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 86.2 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.16 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.79 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 85.29 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.85 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 84.2 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.88 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 83.84 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 83.78 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.74 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 82.43 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.43 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 82.4 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 82.22 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 82.02 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 81.63 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 81.57 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.43 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.0 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 80.77 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 80.58 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.41 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 80.35 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 80.1 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-67 Score=556.45 Aligned_cols=544 Identities=22% Similarity=0.332 Sum_probs=460.3
Q ss_pred hhhHhhcCCchHHHHHHHHHHHHH--------------hhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCC
Q 036303 2 FYVLANAKLYKNARCLIKDVTENL--------------LKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGH 67 (605)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 67 (605)
++.|...|++.+|..++.++...- +...+....+..++..+.... ...+...++.++..|.+.|+
T Consensus 58 i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~n~li~~~~~~g~ 136 (857)
T PLN03077 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH-PSLGVRLGNAMLSMFVRFGE 136 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhCCC
Confidence 567889999999999998876520 011112224455565554433 34567789999999999999
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHh
Q 036303 68 IEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMID 147 (605)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 147 (605)
++.|+++|+++.. |+..+|+.++.+|.+.|++++|.++|++|...|+.||..+|+.++.+|...+++..+.+++..+.+
T Consensus 137 ~~~A~~~f~~m~~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 137 LVHAWYVFGKMPE-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred hHHHHHHHhcCCC-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 9999999999974 788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchH
Q 036303 148 KGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTF 227 (605)
Q Consensus 148 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 227 (605)
.|+.||..+++.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|+++|++|...|+.||..||
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 99999999999999999999999999999998864 68889999999999999999999999999988899999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 036303 228 GVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGV 307 (605)
Q Consensus 228 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (605)
+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|.+.
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKN 367 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhC
Confidence 999999999999999999999998888888999999999999888888888888888863 7888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 308 GQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLY 387 (605)
Q Consensus 308 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 387 (605)
|++++|..+|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH------------------------------
Q 036303 388 TEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTV------------------------------ 437 (605)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------------------------ 437 (605)
++|.. +|..+|+.++.+|...|+.++|..+|++|.. ++.||..++
T Consensus 448 ~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 448 HNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 77653 3555666666666666666666666666654 345555555
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 036303 438 -----SSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYT 512 (605)
Q Consensus 438 -----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (605)
+.++.+|.++|++++|.++|+++ .+|..+|+.++.+|.+.|+.++|.++|++|.+.|+.||..||.
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~---------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH---------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc---------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 45556666667777777776654 4788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH-HCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMI-KMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
.++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++++|.+.|++++|.++++++
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 99999999999999999999999 7899999999999999999999999999999987
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-66 Score=533.56 Aligned_cols=519 Identities=20% Similarity=0.280 Sum_probs=442.8
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 036303 49 KFNPSVFSTLIIAFSEMGHIEEALWVYRKIE----VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGV 124 (605)
Q Consensus 49 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (605)
..+...|..+...+++.|++++|+++|++|. .+++...+..++..|.+.|..++|..+|+.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 3455567777888888888888888888883 335556667778888888888888888887753 78888888
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC
Q 036303 125 LIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVAD 204 (605)
Q Consensus 125 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 204 (605)
++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036303 205 VNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAK--FGVFPNIFVYNCLIDGHCKAGNLFEAMSLC 282 (605)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 282 (605)
+++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888875 567888888888888888888888888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 036303 283 SEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEP 362 (605)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 362 (605)
++|.+.+++|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|.+.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
+..+|+.++.+|++.|++++|.++|++|...++.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc-----------------------cCCHHHHHHHHHHH
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY-----------------------DGQILKASKLFSDM 499 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~~ 499 (605)
+|.+.|++++|.+++.++.+.. +.||..+|+.++..|.+ .+..++|..+|++|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~G----i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDG----IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 8888888888888888887754 68888888888765432 12357899999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 500 RSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 500 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
++.|+.||..||..++.++...+....+..+++.|...+..|+..+|..+++++.+. .++|..+++.|.+.+.-..
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 999999999999999987778889999999998888778888999999999988432 3689999999999976443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-66 Score=531.85 Aligned_cols=520 Identities=21% Similarity=0.350 Sum_probs=485.0
Q ss_pred HHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 036303 17 LIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIK 96 (605)
Q Consensus 17 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (605)
.+..+...+++.++.. .+..+|+.+......+.+...+..++..|.+.|.+++|+.+|+.+.. |+..+|+.++.+|.+
T Consensus 372 ~~~~~y~~l~r~G~l~-eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIK-DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHHHHHCcCHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 3444444455566655 78899999987666666777788899999999999999999999976 899999999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 97 KGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESM 176 (605)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 176 (605)
.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHh--CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 177 FRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLH--HNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFG 254 (605)
Q Consensus 177 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 254 (605)
|+.|...|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|
T Consensus 530 f~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999986 5789999999999999999999999999999999999
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036303 255 VFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNS 334 (605)
Q Consensus 255 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 334 (605)
+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 036303 335 LIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGN 414 (605)
Q Consensus 335 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (605)
++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|.+.|+
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHhhhccCCCCCCc
Q 036303 415 MKETLRLYKEMLEAKITPSVFTVSSLIHGLFK----N-------------------GRISNALNFFLEKTDKTDGGYCSP 471 (605)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~~~~ 471 (605)
+++|..++.+|.+.|+.||..+++.++..|.+ + +..++|+.+|++|.... +.|
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G----i~P 845 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG----TLP 845 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC----CCC
Confidence 99999999999999999999999999866432 1 12367999999998864 799
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHH
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAV 544 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 544 (605)
|..+|+.++.++...+....+..+++.|...+..|+..+|+.+++++.+. .++|..+++.|.+.|+.|+..
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99999999988888899999999999998878889999999999998432 468999999999999999753
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-66 Score=546.81 Aligned_cols=554 Identities=19% Similarity=0.283 Sum_probs=506.8
Q ss_pred hhhHhhcCCchHHHHHHHHHHHHHhhc--------------CCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCC
Q 036303 2 FYVLANAKLYKNARCLIKDVTENLLKS--------------RKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGH 67 (605)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 67 (605)
+..+...|++.+|..++..+...-..- ......+.+++..+... +...++.+++.++.+|++.|+
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF-GFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc-CCCcccchHhHHHHHHhcCCC
Confidence 456677777777777777665320000 00011233444444332 334577789999999999999
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHh
Q 036303 68 IEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMID 147 (605)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 147 (605)
+++|..+|+++.. ++..+|+.++.+|.+.|++++|.++|++|...|+.||..+|+.++.+|++.|+++.|.+++..+.+
T Consensus 238 ~~~A~~lf~~m~~-~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 238 VVSARLVFDRMPR-RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred HHHHHHHHhcCCC-CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 9999999999975 688899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchH
Q 036303 148 KGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTF 227 (605)
Q Consensus 148 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 227 (605)
.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|+++|++|...|+.||..+|
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 99999999999999999999999999999999974 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 036303 228 GVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGV 307 (605)
Q Consensus 228 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (605)
..++.+|++.|+++.|.++++.+.+.|+.++..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|.+.
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLN 468 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999975 7889999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 308 GQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLY 387 (605)
Q Consensus 308 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 387 (605)
|+.++|..+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|++.|++++|.++|
T Consensus 469 g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 999999999999986 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q 036303 388 TEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG 467 (605)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (605)
+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+++.+..+
T Consensus 548 ~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g-- 620 (857)
T PLN03077 548 NSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS-- 620 (857)
T ss_pred Hhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC--
Confidence 886 5799999999999999999999999999999999999999999999999999999999999999985543
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHH
Q 036303 468 YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVIN 546 (605)
Q Consensus 468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 546 (605)
+.|+..+|+.++.++.+.|++++|.+++++|. +.||..+|..|+.+|...|+.+.+....+++.+ +.| +...|
T Consensus 621 -i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y 694 (857)
T PLN03077 621 -ITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYY 694 (857)
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchH
Confidence 79999999999999999999999999999985 789999999999999999999999999988887 566 58888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 547 QVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
..+.+.|.+.|+|++|.++.+.|++.+....|.
T Consensus 695 ~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 695 ILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999999998877764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-61 Score=498.43 Aligned_cols=478 Identities=18% Similarity=0.301 Sum_probs=454.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 036303 82 PAIQACNALLNGLIKKGKFDSVWEFYEEMVLCG-LVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTIL 160 (605)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (605)
.+...|+.++..+.+.|++++|.++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455689999999999999999999999998764 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH
Q 036303 161 IHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGEL 240 (605)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (605)
+.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|..|+..+|..++.+|+..|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999975 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 241 RAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKM 320 (605)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 320 (605)
+.+.+++..+.+.|+.++..+++.++.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|..+|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999964 78999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 036303 321 YKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVV 400 (605)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 400 (605)
.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|++||..+++.++.+|++.|++++|.++|++|. .||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 46999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHH
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAII 480 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 480 (605)
+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.+.+.. ++.|+..+|+.++
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~---g~~p~~~~y~~li 469 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH---RIKPRAMHYACMI 469 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CCCCCccchHhHH
Confidence 9999999999999999999999999999999999999999999999999999999999998753 3789999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCh
Q 036303 481 QALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDL 559 (605)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 559 (605)
.+|.+.|++++|.+++++| +..|+..+|+.++.+|...|+++.|..+++++.+ +.| +..+|..++++|.+.|++
T Consensus 470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCH
Confidence 9999999999999999887 4789999999999999999999999999999875 556 578999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCC
Q 036303 560 KSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 560 ~~A~~~~~~~~~~~~~~~~~ 579 (605)
++|.++++.|++.+....|.
T Consensus 545 ~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 545 AEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHHHHHHHHHHcCCccCCC
Confidence 99999999999998765543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-59 Score=486.01 Aligned_cols=469 Identities=21% Similarity=0.308 Sum_probs=448.2
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 036303 52 PSVFSTLIIAFSEMGHIEEALWVYRKIE----VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLID 127 (605)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 127 (605)
...|+.++..+.+.|++++|+++|+.+. ..|+..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+.++.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 3478999999999999999999999883 468899999999999999999999999999999999999999999999
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHH
Q 036303 128 CCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNR 207 (605)
Q Consensus 128 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 207 (605)
+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++.+.|..+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999999999999996 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036303 208 ALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEK 287 (605)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 287 (605)
+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|. ++|..+|+.++.+|++.|++++|.++|++|.+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999996 46899999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHH
Q 036303 288 FEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTF 367 (605)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (605)
.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.+ ||..+|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~ 394 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISW 394 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864 688999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 036303 368 SSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLE-AKITPSVFTVSSLIHGLFK 446 (605)
Q Consensus 368 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 446 (605)
+.++.+|++.|+.++|.++|++|...|+.||..||+.++.+|.+.|..++|.++|+.|.+ .++.|+..+|+.++.+|.+
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999986 5899999999999999999
Q ss_pred cCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 036303 447 NGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRML 525 (605)
Q Consensus 447 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 525 (605)
.|++++|.++++++. ..|+..+|+.++.+|...|+++.|..+++++.+ +.|+ ..+|..++..|.+.|+++
T Consensus 475 ~G~~~eA~~~~~~~~-------~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 475 EGLLDEAYAMIRRAP-------FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred cCCHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHH
Confidence 999999999998763 479999999999999999999999999999986 6675 559999999999999999
Q ss_pred HHHHHHHHHHHCCCCc
Q 036303 526 DVMMLLADMIKMGIVP 541 (605)
Q Consensus 526 ~A~~~~~~~~~~~~~~ 541 (605)
+|.++++.|.+.|+..
T Consensus 546 ~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 546 EAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHHHcCCcc
Confidence 9999999999998764
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=324.89 Aligned_cols=562 Identities=14% Similarity=0.083 Sum_probs=445.4
Q ss_pred hHhhcCCchHHHHHHHH--------------HHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChH
Q 036303 4 VLANAKLYKNARCLIKD--------------VTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIE 69 (605)
Q Consensus 4 ~~~~~~~~~~a~~~~~~--------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 69 (605)
++...|++.+|...+.. +...+...++.. .+...++.+... .+.++..+..++..+.+.|+++
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 380 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVD-EAIATLSPALGL--DPDDPAALSLLGEAYLALGDFE 380 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH-HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCCCHH
Confidence 45566777766655542 344555665555 666777665432 4457788889999999999999
Q ss_pred HHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHh
Q 036303 70 EALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMID 147 (605)
Q Consensus 70 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 147 (605)
+|.+.|+++. .+.+...+..+...+...|++++|.+.|+.+....+. .......++..+.+.|++++|..+++.+..
T Consensus 381 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999998872 4456778888888889999999999999998877533 445666677888899999999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchH
Q 036303 148 KGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTF 227 (605)
Q Consensus 148 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 227 (605)
.. +.+..++..+..++...|++++|.+.|+++.+..+. +...+..++..+...|++++|.+.++++...+ +.+..++
T Consensus 460 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 536 (899)
T TIGR02917 460 KQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAI 536 (899)
T ss_pred hC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHH
Confidence 63 456778888899999999999999999998876433 55667778888889999999999999988764 4567788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 036303 228 GVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGV 307 (605)
Q Consensus 228 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (605)
..+...+.+.|+.++|...++.+.+.+ +.+...+..++..|...|++++|..+++.+.... +.+...|..+...+...
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 888888888999999999998887764 4566677788888999999999999999887754 45677888888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 308 GQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLY 387 (605)
Q Consensus 308 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 387 (605)
|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|..++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999888764 3466778888888888999999999999888764 346778888888899999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q 036303 388 TEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG 467 (605)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (605)
+.+.... +.+...+..+...+...|++++|...|+++...+ |+..++..++.++.+.|++++|.+.+++++...
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--- 766 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--- 766 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 8888775 4466777778888888999999999999988764 444677778888889999999999998888764
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHH
Q 036303 468 YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVIN 546 (605)
Q Consensus 468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 546 (605)
+.+...+..++..|...|++++|.+.|+++.+.. +++...+..+...+...|+ .+|+..++++++. .| ++.++
T Consensus 767 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~ 840 (899)
T TIGR02917 767 --PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAIL 840 (899)
T ss_pred --CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHH
Confidence 5567788888888888999999999999988742 3456688888888888888 7799999988873 34 57778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCccchhhhh
Q 036303 547 QVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTRSFL 588 (605)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (605)
..++.++...|++++|...++++.+.+|.++.........+.
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL 882 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 888888999999999999999999988886555444444333
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=322.94 Aligned_cols=553 Identities=15% Similarity=0.082 Sum_probs=337.0
Q ss_pred HhhcCCchHHHHHHHHHH--------------HHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHH
Q 036303 5 LANAKLYKNARCLIKDVT--------------ENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEE 70 (605)
Q Consensus 5 ~~~~~~~~~a~~~~~~l~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 70 (605)
+...|++.+|...+..++ ..+...++.. .+...|...... .|.++..+..++..+.+.|++++
T Consensus 271 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~-~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~ 347 (899)
T TIGR02917 271 DFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE-QAYQYLNQILKY--APNSHQARRLLASIQLRLGRVDE 347 (899)
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHH
Confidence 344566666665554431 2223333333 555555554332 23345556666666666777777
Q ss_pred HHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 036303 71 ALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 71 A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 148 (605)
|...++.+ ..+.+...+..++..+.+.|++++|.+.|+++....+ .+...+..+..++...|++++|...++.+.+.
T Consensus 348 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 348 AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 77666665 2334455666666666667777777777766665532 24555666666666667777777777666655
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHH
Q 036303 149 GIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFG 228 (605)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 228 (605)
... .......++..+.+.|++++|..+++.+.... +++..+|..+...+...|++++|.+.|+++.+.. +.+...+.
T Consensus 427 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 503 (899)
T TIGR02917 427 DPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAA 503 (899)
T ss_pred CCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHH
Confidence 322 23344455666666677777777766666542 2355566666666666677777777776666542 33445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 036303 229 VLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVG 308 (605)
Q Consensus 229 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (605)
.++..+...|++++|...++.+.... +.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..+...|
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCC
Confidence 66666666677777777776666543 3455566666666666677777777776665543 344455566666666667
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 309 QLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYT 388 (605)
Q Consensus 309 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 388 (605)
++++|..+++.+.... +.+...|..++.++...|++++|...++++.+.. +.+...+..+..++...|++++|...++
T Consensus 582 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 582 QLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777766666543 3455666666666666677777777776666553 2345556666666666677777777776
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC
Q 036303 389 EMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGY 468 (605)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 468 (605)
++.... +.+..++..++..+...|++++|..+++.+.+.. +.+...+..++..+...|++++|++.|+++...
T Consensus 660 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----- 732 (899)
T TIGR02917 660 RALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR----- 732 (899)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----
Confidence 666543 3345566666666666677777777776666654 445556666666666667777777777666654
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHH
Q 036303 469 CSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQV 548 (605)
Q Consensus 469 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 548 (605)
.|+..++..++.++...|++++|.+.++++.+. .+.+...+..++..|...|++++|...++++++.. ++++.++..
T Consensus 733 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 809 (899)
T TIGR02917 733 -APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNN 809 (899)
T ss_pred -CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 233345556666666667777777776666653 12344466666666666677777777777666532 235666666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 549 MVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
++.++...|+ ++|+..++++.+..|+++..
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~ 839 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLAPNIPAI 839 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhCCCCcHH
Confidence 6666777666 66777777776666655443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-27 Score=257.04 Aligned_cols=541 Identities=13% Similarity=0.051 Sum_probs=364.5
Q ss_pred HHHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC--CCCCHHHH----
Q 036303 14 ARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE--VLPAIQAC---- 87 (605)
Q Consensus 14 a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~---- 87 (605)
+...+-+.++.....++++ .+.+.+..+... .|.+|.++..++..+.+.|+.++|.+.++++. .|.+..++
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d-~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~ 103 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHRED-LVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRT 103 (1157)
T ss_pred HHHHHHHHHHHHHhhCChH-HHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 3444444445445555555 677777766443 55688888889999999999999999998872 33333322
Q ss_pred ------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH
Q 036303 88 ------------NALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV-TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTV 154 (605)
Q Consensus 88 ------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 154 (605)
..++..+...|++++|.+.|+.+...+++ +.. ............|+.++|+..++++.+.. +.+.
T Consensus 104 ~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~ 181 (1157)
T PRK11447 104 TMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNT 181 (1157)
T ss_pred HHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCH
Confidence 33445677889999999999998876433 332 12122222334588999999999988874 3366
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------------C--------------CCcccH----------
Q 036303 155 VIYTILIHGLCNENKMVEAESMFRSMRECGV------------------V--------------PNLYTY---------- 192 (605)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------~--------------p~~~~~---------- 192 (605)
..+..+...+...|+.++|+..++++..... . |+....
T Consensus 182 ~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~ 261 (1157)
T PRK11447 182 GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQ 261 (1157)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 7788888888888999999888888754311 0 110000
Q ss_pred -----------HHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHh
Q 036303 193 -----------NALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFP-NIF 260 (605)
Q Consensus 193 -----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 260 (605)
......+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|...|+++.+..... ...
T Consensus 262 ~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~ 340 (1157)
T PRK11447 262 QKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD 340 (1157)
T ss_pred HHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh
Confidence 011344567788899999998888763 4467788888888889999999999998887754221 111
Q ss_pred hH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036303 261 VY------------NCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILAN 328 (605)
Q Consensus 261 ~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 328 (605)
.+ ......+.+.|++++|+..|+++.... +.+...+..+...+...|++++|+..|+++.+... .+
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~ 418 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GN 418 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence 11 122445678888999999998888764 34566677788888888999999998888887542 22
Q ss_pred HHHHHHH------------------------------------------HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHH
Q 036303 329 VVTYNSL------------------------------------------IDGYCKEGDMEKALSVCSQMTEKGVEPNVVT 366 (605)
Q Consensus 329 ~~~~~~l------------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 366 (605)
...+..+ ...+...|++++|+..++++.+..+ .+...
T Consensus 419 ~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~ 497 (1157)
T PRK11447 419 TNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWL 497 (1157)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHH
Confidence 3333222 2334567888888888888887643 35666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------
Q 036303 367 FSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA------------------ 428 (605)
Q Consensus 367 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------------ 428 (605)
+..+...|...|++++|...++++.... +.+...+..+...+...++.++|...++.+...
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 7778888888888888888888887653 223333332322333344444444433322100
Q ss_pred ---------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccC
Q 036303 429 ---------------------KITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDG 487 (605)
Q Consensus 429 ---------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 487 (605)
..+.+...+..+...+.+.|++++|+..|++++... +.+...+..++.++...|
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-----P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-----PGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCC
Confidence 124455566777778888888888888888888763 455777788888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--Cc---cHHHHHHHHHHHHhcCChhH
Q 036303 488 QILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGI--VP---DAVINQVMVRGYQENGDLKS 561 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~ 561 (605)
++++|++.++++.+ ..|+ ...+..+..++...|++++|.+.+++++.... +| +..++..+++.+...|++++
T Consensus 652 ~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 652 DLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred CHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 88888888888776 4444 34666677788888888888888888875321 11 23466677888888888888
Q ss_pred HHHHHHHHHh
Q 036303 562 AFRCSEFLKE 571 (605)
Q Consensus 562 A~~~~~~~~~ 571 (605)
|+..|+++..
T Consensus 730 A~~~y~~Al~ 739 (1157)
T PRK11447 730 ALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHh
Confidence 8888888875
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-26 Score=246.47 Aligned_cols=514 Identities=11% Similarity=-0.004 Sum_probs=382.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH--------
Q 036303 53 SVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTY-------- 122 (605)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------- 122 (605)
..+...++.....++.+.|.+.++++ ..+.++.++..++..+.+.|+.++|.+.++++.+..+. +....
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~ 107 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHh
Confidence 34667888899999999999999988 36667888999999999999999999999999987533 33322
Q ss_pred --------HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 036303 123 --------GVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVV-IYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYN 193 (605)
Q Consensus 123 --------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 193 (605)
..+...+...|++++|++.|+.+.+.+ +|+.. ....+.......|+.++|++.++++.+..+. +...+.
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~ 185 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRN 185 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 334457888999999999999999874 33332 2222222333569999999999999997544 667788
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCC----------------C----------------CCcchH--------------
Q 036303 194 ALMDGYCKVADVNRALEFYHEMLHHNL----------------Q----------------PNVVTF-------------- 227 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~----------------~~~~~~-------------- 227 (605)
.+...+...|++++|++.++++..... . |+....
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 899999999999999999998754310 0 110000
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhH--
Q 036303 228 -------GVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISP-DVFTY-- 297 (605)
Q Consensus 228 -------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-- 297 (605)
......+...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|+..|++..+..... ....|
T Consensus 266 ~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 266 ADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred cCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 012345667899999999999998864 4477888889999999999999999999998754221 11111
Q ss_pred ----------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHH
Q 036303 298 ----------NILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTF 367 (605)
Q Consensus 298 ----------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (605)
......+...|++++|+..++++.... +.+...+..+...+...|++++|++.|+++.+.... +...+
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~ 422 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAV 422 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 122446678899999999999999875 346677888899999999999999999999886422 33333
Q ss_pred HHH------------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 036303 368 SSL------------------------------------------IDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTAL 405 (605)
Q Consensus 368 ~~l------------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 405 (605)
..+ ...+...|++++|++.|++.+... +.+...+..+
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~L 501 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRL 501 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 222 233456788999999999888774 3356677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC------------------
Q 036303 406 IDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG------------------ 467 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------------ 467 (605)
...|...|++++|...++++++.. +.+...+..+...+...++.++|+..++.+.......
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 888999999999999999988754 3444444444444445555555555544332110000
Q ss_pred -----------------CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 036303 468 -----------------YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMM 529 (605)
Q Consensus 468 -----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 529 (605)
..+.+...+..+...+...|++++|+..|+++++ ..|+ ...+..++.++...|++++|++
T Consensus 581 ~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 0134455667788888999999999999999998 4554 5588899999999999999999
Q ss_pred HHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 530 LLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 530 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.++++++ ..| +..++..++.++...|++++|.+.++++.+..|+.++
T Consensus 659 ~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 659 QLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 9998876 344 5777888999999999999999999999998877665
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-24 Score=224.81 Aligned_cols=516 Identities=12% Similarity=0.046 Sum_probs=337.0
Q ss_pred cHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036303 34 VCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI-EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVL 112 (605)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 112 (605)
.+...|+...+. .|.++.++..++..|.+.|++++|+..+++. ...|+...+..++..+ +++++|..+++++..
T Consensus 62 ~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~ 136 (987)
T PRK09782 62 TAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLA 136 (987)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHH
Confidence 444445444332 4456888899999999999999999999887 3334433333333222 888899999999988
Q ss_pred CCCCCCHHhHHHHHHH--------HHccCChhHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHC
Q 036303 113 CGLVADVVTYGVLIDC--------CCGQGDVMKALNLFDEMIDKGIEPTVVIYTIL-IHGLCNENKMVEAESMFRSMREC 183 (605)
Q Consensus 113 ~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~ 183 (605)
..+. +..++..+... |.+. +.|.+.++ .......|+..+.... ..+|.+.|++++|+..+.++.+.
T Consensus 137 ~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 137 QQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred hCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 7433 45555555554 4444 44444444 3222223344444433 77778888888888888888776
Q ss_pred CCCCCcccHHHHHHHHhc-cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C----
Q 036303 184 GVVPNLYTYNALMDGYCK-VADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVF-P---- 257 (605)
Q Consensus 184 ~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~---- 257 (605)
++. +......+...|.. .++ +.+..+++. .+..+......++..+.+.|+.++|.++++++...... |
T Consensus 212 ~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 212 NTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred CCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 543 33334455555555 244 555555432 12235555666666666666666666666554221000 0
Q ss_pred --------------------------------------------------------------------------------
Q 036303 258 -------------------------------------------------------------------------------- 257 (605)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (605)
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 365 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLA 365 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHH
Confidence
Q ss_pred ---------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCChhhHHHHHHHHHhcCC---HHHHHHH-------
Q 036303 258 ---------NIFVYNCLIDGHCKAGNLFEAMSLCSEMEKF-E-ISPDVFTYNILIKGLCGVGQ---LEGAEGL------- 316 (605)
Q Consensus 258 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~A~~~------- 316 (605)
+......+.....+.|+.++|..+|+..... + -.++......++..|.+.+. ..++..+
T Consensus 366 ~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 366 RLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 0011111111223345555555555555431 0 11122233345555555544 2222222
Q ss_pred ---------------HHHHHHC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 036303 317 ---------------LQKMYKE-G-ILA--NVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKA 377 (605)
Q Consensus 317 ---------------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (605)
....... + .++ +...+..+..++.. ++.++|...+.+.... .|+......+...+...
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 446 EQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQV 522 (987)
T ss_pred hhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHC
Confidence 1111111 1 123 55667777766665 7888899988887776 34544444455556789
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 378 GNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFF 457 (605)
Q Consensus 378 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 457 (605)
|++++|...|+++... +|+...+..+...+...|++++|...+++.++.+ +.....+..+.......|++++|+..+
T Consensus 523 Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 523 EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999988665 4455556677788899999999999999998875 344444444555555679999999999
Q ss_pred HHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 458 LEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN-CTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
++.+.. .|+...+..+..++.+.|++++|+..++++.+ ..|+. ..+..+..++...|++++|+..++++++
T Consensus 600 ~~AL~l------~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 600 TRSLNI------APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHh------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999985 56788889999999999999999999999998 56654 4778888899999999999999999998
Q ss_pred CCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCc
Q 036303 537 MGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEG 581 (605)
Q Consensus 537 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 581 (605)
..| ++.++..++.++...|++++|+..++++.+.+|++.....
T Consensus 672 --l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 672 --GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP 715 (987)
T ss_pred --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh
Confidence 456 6889999999999999999999999999999998776654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=212.08 Aligned_cols=453 Identities=14% Similarity=0.122 Sum_probs=313.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036303 87 CNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCN 166 (605)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (605)
...+..-..+.|++.+|.+.-.-.-..+ +.+......+-..+.+..+++.....-....+.. +.-..+|..+.+.+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4556666677888888877665544442 2244445555566666667776665555544442 3456778888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhcCCHHHHHH
Q 036303 167 ENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVV-TFGVLMDGLCKVGELRAAGN 245 (605)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~ 245 (605)
.|++++|+..++.+++..++ ....|..+..++...|+.+.|.+.|.+.++. .|+.. ....+....-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 88888888888888876544 5777888888888888888888888887765 34322 33344555556778888888
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 246 FFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPD-VFTYNILIKGLCGVGQLEGAEGLLQKMYKEG 324 (605)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 324 (605)
.+.++++.. +.=...|+.|...+..+|+...|+..|++..+.+ |+ ...|..+...|...+.++.|...+.+.....
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 877777643 2234567777777778888888888888877643 33 4567777777777778888887777776653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 036303 325 ILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTA 404 (605)
Q Consensus 325 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 404 (605)
+.....+..+...|...|.++.|++.|++.++..+ .=+..|+.|..++...|+..+|...|.+.+... +......+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 22445666677777778888888888888777632 235677778888888888888888887777663 224456677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc-HHHHHHHHHHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN-HVLYAAIIQAL 483 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 483 (605)
|...|...|.+++|..+|....+-. +.-....+.|...|.++|++++|+..|++++.- .|+ ..+|+.++..|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI------~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI------KPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc------CchHHHHHHhcchHH
Confidence 7777888888888888888777643 333556777777788888888888888877763 455 56777777788
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhH
Q 036303 484 CYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKS 561 (605)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 561 (605)
-..|+.+.|++.+.+++. +.|... .++.|...|...|+..+|++-++.+++ ++|| +..+..++.++.--.+|..
T Consensus 433 ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccc
Confidence 888888888888887776 566543 777777778778888888888887776 5665 5666666555444444433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-25 Score=203.34 Aligned_cols=443 Identities=16% Similarity=0.129 Sum_probs=277.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcc
Q 036303 55 FSTLIIAFSEMGHIEEALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQ 132 (605)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (605)
...|++-..+.|++.+|.+....+. ++.+......+...+.+..+++.....-....+.. +.-..+|..+.+.+...
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 5556666667777777777666552 22222333333455555556665555444444442 22456777777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH-HHHHHhccCChHHHHHH
Q 036303 133 GDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNA-LMDGYCKVADVNRALEF 211 (605)
Q Consensus 133 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~ 211 (605)
|++++|+..++.+++.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.....+ +...+-..|++.+|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 77777777777777663 224567777777777777777777777776664 344333322 33344456777777777
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036303 212 YHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPN-IFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEI 290 (605)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 290 (605)
|.+.++.. +--...|..|...+-..|+...|++.|+++.+.. |+ ...|-.|...|...+.+++|+..+.......
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 77766642 2234556677777777777777777777776643 32 3456667777777777777777777666543
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 036303 291 SPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSL 370 (605)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 370 (605)
+.....+..+...|..+|..+.|+..+++.++..+ .-...|+.|..++-..|+..+|.+.|.+.+... +......+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 23345566666667777777777777777766532 234567777777777777777777777777653 2245566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 371 IDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRI 450 (605)
Q Consensus 371 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (605)
...|...|.++.|..+|.....-. +--...++.|...|-..|++++|+..|++.+... +.-...++.++..|-..|+.
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhH
Confidence 777777777777777777666542 1123456667777777777777777777776642 22355677777777777777
Q ss_pred HHHHHHHHHhhhccCCCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 036303 451 SNALNFFLEKTDKTDGGYCSPN-HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRG 517 (605)
Q Consensus 451 ~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~ 517 (605)
+.|+..+.+++.- .|. ..+.+.+...|-..|+..+|++-++.+++ ++||.. .+-.++.+
T Consensus 439 ~~A~q~y~rAI~~------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 439 SAAIQCYTRAIQI------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHHHHHhc------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHH
Confidence 7777777777663 343 45566777777777777777777777776 566643 44444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-23 Score=204.06 Aligned_cols=544 Identities=12% Similarity=0.041 Sum_probs=405.7
Q ss_pred hhhHhhcCCchHHHHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC--
Q 036303 2 FYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE-- 79 (605)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 79 (605)
+++..++|+|..|..+|..++.. .+. .-+.....+...+.+.|+.+.|+..|..+.
T Consensus 171 A~i~ynkkdY~~al~yyk~al~i--------------------np~--~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL 228 (1018)
T KOG2002|consen 171 ARIAYNKKDYRGALKYYKKALRI--------------------NPA--CKADVRIGIGHCFWKLGMSEKALLAFERALQL 228 (1018)
T ss_pred HHHHhccccHHHHHHHHHHHHhc--------------------Ccc--cCCCccchhhhHHHhccchhhHHHHHHHHHhc
Confidence 35666777777777777775542 111 223344556678889999999999998872
Q ss_pred CCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCC--CCH
Q 036303 80 VLPAIQACNALLNGLIKK---GKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIE--PTV 154 (605)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~ 154 (605)
.|.++.++..|...-... ..+..+..++.+.-..+ ..++...+.|.+.+...|+++.+..+...+...... .-.
T Consensus 229 dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 229 DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 444555555554443333 34667777887777764 348889999999999999999999999998876211 123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 036303 155 VIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGL 234 (605)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (605)
..|-.+.++|-..|++++|...|.+.......-....+..+.+.+.+.|+++.+...|+.+.... +.+..+...+...|
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHH
Confidence 45778999999999999999999888876433224455668899999999999999999998873 55677888888888
Q ss_pred HhcC----CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCChhhHHHHHHHHHh
Q 036303 235 CKVG----ELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEM----EKFEISPDVFTYNILIKGLCG 306 (605)
Q Consensus 235 ~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~ 306 (605)
+..+ ..+.|..++.+..+.. +.|...|-.+...+....-+.. +..|... ...+.++.+...|.+...+..
T Consensus 387 a~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 387 AHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 7765 4677777777777653 5677788878777766554444 6666554 344445777889999999999
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 036303 307 VGQLEGAEGLLQKMYKE---GILANV------VTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKA 377 (605)
Q Consensus 307 ~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (605)
.|+++.|...|...... ...+|. .+--.+..+.-..++.+.|.+.|..+.+.. +--...|..++......
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDK 543 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhc
Confidence 99999999999988764 122232 233345556677789999999999999873 22334555555444456
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh----------
Q 036303 378 GNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA-KITPSVFTVSSLIHGLFK---------- 446 (605)
Q Consensus 378 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~---------- 446 (605)
+...+|...+....... ..++..++.+...+.....+.-|.+-|..+.+. ...+|..+...|+..|..
T Consensus 544 ~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred cCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 78889999999888764 446666666777888888888888866666543 224688888888887653
Q ss_pred --cCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 447 --NGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRM 524 (605)
Q Consensus 447 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 524 (605)
.+..++|+++|.+++... +.|..+-+.++.+++..|++.+|..+|.+..+... ....+|..++.+|...|++
T Consensus 623 k~kk~~~KAlq~y~kvL~~d-----pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRND-----PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcC-----cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHH
Confidence 345778999999888864 67778888999999999999999999999998532 3455888999999999999
Q ss_pred HHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 525 LDVMMLLADMIKMGI-VPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 525 ~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
..|++.|+...+.-. ..+..+...|++++.+.|.+.+|.++..+++...|.++..
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSV 752 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchH
Confidence 999999999885433 3369999999999999999999999999999999987764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-22 Score=208.48 Aligned_cols=548 Identities=13% Similarity=0.034 Sum_probs=391.2
Q ss_pred ChhhHhhcCCchHHHHHHHHHHHH----------HhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHH--------H
Q 036303 1 IFYVLANAKLYKNARCLIKDVTEN----------LLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIA--------F 62 (605)
Q Consensus 1 ~~~~~~~~~~~~~a~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~ 62 (605)
++.++...|++++|+...+..+.. +... .....+...++.+... .|.+..++..++.. |
T Consensus 84 LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i-~~~~kA~~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y 160 (987)
T PRK09782 84 LAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI-PVEVKSVTTVEELLAQ--QKACDAVPTLRCRSEVGQNALRL 160 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-ccChhHHHHHHHHHHh--CCCChhHHHHHHHHhhccchhhh
Confidence 356788888888888888877631 1111 2223566777776443 44566777777776 7
Q ss_pred HhcCChHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc-cCChhHHHH
Q 036303 63 SEMGHIEEALWVYRKIEVLPAIQ-ACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG-QGDVMKALN 140 (605)
Q Consensus 63 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~ 140 (605)
.+.+...+|++ .+.....|... ....+.+.|.+.|++++|+.++.++.+.++. +......+..+|.. .++ +.+..
T Consensus 161 ~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~a 237 (987)
T PRK09782 161 AQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLA 237 (987)
T ss_pred hhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHH
Confidence 77777777777 33333333344 3444488999999999999999999988644 56667777778877 466 77777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCcccHHHH------------------------
Q 036303 141 LFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVV-PNLYTYNAL------------------------ 195 (605)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l------------------------ 195 (605)
++... .+.+...+..++..|.+.|+.++|.++++++...-.. |...+|..+
T Consensus 238 l~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~ 313 (987)
T PRK09782 238 LQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQ 313 (987)
T ss_pred Hhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHH
Confidence 75542 2357888889999999999999999999888654222 333333211
Q ss_pred ------HHHHhccCChHHHHHHHH-----------------------------HHHhCCCCCCcchHHHHHHHHHhcCCH
Q 036303 196 ------MDGYCKVADVNRALEFYH-----------------------------EMLHHNLQPNVVTFGVLMDGLCKVGEL 240 (605)
Q Consensus 196 ------~~~~~~~~~~~~a~~~~~-----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (605)
+..+.+.++++.+.++.. .|.+. .+-+......+.-.....|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 314 YVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccH
Confidence 333344444444433321 11111 011333333444445677889
Q ss_pred HHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCC---HHHHHHH-------------------------HHHHHhCCC
Q 036303 241 RAAGNFFVHMAKF--GVFPNIFVYNCLIDGHCKAGN---LFEAMSL-------------------------CSEMEKFEI 290 (605)
Q Consensus 241 ~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~~a~~~-------------------------~~~~~~~~~ 290 (605)
++|.++++..... ....+......++..|.+.+. ..++..+ +...... .
T Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~ 471 (987)
T PRK09782 393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-M 471 (987)
T ss_pred HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-C
Confidence 9999999888652 112344455567777777665 3333332 1112211 1
Q ss_pred CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHH
Q 036303 291 SP--DVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFS 368 (605)
Q Consensus 291 ~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (605)
++ +...|..+..++.. +++++|...+.+..... |+......+...+...|++++|...++++... +|+...+.
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~ 546 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLL 546 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHH
Confidence 33 56677777777766 88999999888877663 55544444555567899999999999998765 34455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036303 369 SLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG 448 (605)
Q Consensus 369 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (605)
.+...+.+.|++++|...+++.+... +.+...+..+.......|++++|...+++.++.. |+...+..++.++.+.|
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCC
Confidence 77888899999999999999999874 2233344444445556799999999999999874 56888999999999999
Q ss_pred CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 036303 449 RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDV 527 (605)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 527 (605)
++++|+..+++.+... +.+...+..+..++...|++++|+..++++.+ ..|+ ...+..+..++...|++++|
T Consensus 624 ~~deA~~~l~~AL~l~-----Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 624 NVPAAVSDLRAALELE-----PNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred CHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999874 55677888999999999999999999999998 5565 55888999999999999999
Q ss_pred HHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 528 MMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 528 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
...++++++ +.|+ ..+....+....+..+++.|.+.+++....+|...
T Consensus 697 ~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 697 QHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999998 5574 68888999999999999999999999999988866
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-21 Score=199.69 Aligned_cols=256 Identities=14% Similarity=0.121 Sum_probs=154.9
Q ss_pred CCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 308 GQLEGAEGLLQKMYKEG-I-LANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMG 385 (605)
Q Consensus 308 ~~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 385 (605)
+++++|...|+.....+ . +.....+..+...+...|++++|+..+++..+..+ .+...|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHH
Confidence 55666666666666543 1 12334555666666666777777777776666531 234456666666666777777777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccC
Q 036303 386 LYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTD 465 (605)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 465 (605)
.|++++... +.+...+..+...+...|++++|...|++.++.. +.+...+..++.++.+.|++++|+..|++.+...
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 776666553 2345566666666667777777777777776654 4445566666666677777777777777666542
Q ss_pred CCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HH-------HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 466 GGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN-CT-------YTTMLRGLLRAKRMLDVMMLLADMIKM 537 (605)
Q Consensus 466 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~ 537 (605)
+.+...+..++.++...|++++|++.|+++.+ +.|+. .. +...+..+...|++++|.+.++++++.
T Consensus 464 ----P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 464 ----PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred ----CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 33455666666677777777777777777665 22321 01 111111222356777777777776653
Q ss_pred CCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 538 GIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 538 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
.| +..++..++.++.+.|++++|+.+++++.++.+.
T Consensus 538 --~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 538 --DPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred --CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 34 3445666777777777777777777777666543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-21 Score=193.89 Aligned_cols=433 Identities=12% Similarity=0.028 Sum_probs=307.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036303 87 CNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCN 166 (605)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (605)
+...+..+.+.|++++|+..|++.+.. .|+...|..+..+|.+.|++++|+..++..++.. +.+..++..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 456678888999999999999998875 4577788889999999999999999999999874 3356788889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 036303 167 ENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNF 246 (605)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 246 (605)
.|++++|+..|......+.. +......++..+.. ..+........... +++...+..+...+ ..........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhh
Confidence 99999999888776654221 11111112221111 22333333333332 33333333333322 21111111111
Q ss_pred HHHHHHCCCCCC-HhhHHHHHHH---HHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 247 FVHMAKFGVFPN-IFVYNCLIDG---HCKAGNLFEAMSLCSEMEKFE--ISPDVFTYNILIKGLCGVGQLEGAEGLLQKM 320 (605)
Q Consensus 247 ~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 320 (605)
+....+. .+. ...+..+... ....+++++|.+.|+.....+ .+.....+..+...+...|++++|+..+++.
T Consensus 280 ~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111111 111 1111111111 123478999999999998754 1234566788888889999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 036303 321 YKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVV 400 (605)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 400 (605)
.... +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|+..|++.+... +.+..
T Consensus 358 l~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~ 434 (615)
T TIGR00990 358 IELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIF 434 (615)
T ss_pred HHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHH
Confidence 8874 2346688888889999999999999999998874 3467889999999999999999999999999874 33566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC-CCCccHH-HHHH
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG-YCSPNHV-LYAA 478 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~-~~~~ 478 (605)
.+..+...+...|++++|+..+++.++.. +.+...+..++..+...|++++|++.|++++...+.. ....+.. .++.
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 77788889999999999999999998864 5668889999999999999999999999988754321 0111111 1222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 479 IIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKM 537 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 537 (605)
.+..+...|++++|.++++++.+ +.|+.. .+..++.++...|++++|+..++++.+.
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 22333446999999999999987 456554 7888999999999999999999999874
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-20 Score=180.18 Aligned_cols=408 Identities=14% Similarity=0.051 Sum_probs=208.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHH
Q 036303 153 TVVIYTILIHGLCNENKMVEAESMFRSMRECGVV--PNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVL 230 (605)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 230 (605)
++.+.+.|...|.-.|++..+..+...+...... .-...|-.+.++|-..|++++|..+|.+..+.........+..+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 3444444445555555555555554444433110 01123444555555555555555555544443211112233344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 036303 231 MDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAG----NLFEAMSLCSEMEKFEISPDVFTYNILIKGLCG 306 (605)
Q Consensus 231 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (605)
++.+...|+++.+...|+.+.+.. +.+..+...+...|...+ ..+.|..++....+.. +.|+..|..+...+..
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 455555555555555555554432 233334444444443332 2344444444443322 2344444444444433
Q ss_pred cCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCcCH------HHHHHHHHH
Q 036303 307 VGQLEGAEGLLQKMY----KEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEK---GVEPNV------VTFSSLIDG 373 (605)
Q Consensus 307 ~~~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~ 373 (605)
. ++..++..+..+. ..+..+.+...|.+...+...|+++.|...|...... ...++. .+-..+..+
T Consensus 427 ~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 T-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred c-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 2 2222244443322 2233344555555555555556666666555555443 111122 112223444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036303 374 QCKAGNIDAAMGLYTEMVIKSLVPDV-VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISN 452 (605)
Q Consensus 374 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (605)
+-..++++.|.+.|..++.. .|+- ..|..++......++..+|...++.....+ ..++.++..++..+.+...+.-
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcc
Confidence 44455555555666555554 2222 223333322223345556666666665543 4455555666666666666666
Q ss_pred HHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc------------cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 036303 453 ALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY------------DGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLL 519 (605)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 519 (605)
|.+-|+.+.+... ..+|..+...|++.|.+ .+..++|+++|.+++. ..| |...-+.+.-+++
T Consensus 583 a~k~f~~i~~~~~---~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 583 AKKKFETILKKTS---TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLA 657 (1018)
T ss_pred cccHHHHHHhhhc---cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhh
Confidence 6666655555432 13555555566665542 2345677777777776 334 3445566667777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 520 RAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
..|++.+|..+|.+..+.. .....+|..++.+|..+|+|-.|++.|+...+.
T Consensus 658 ~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred hccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887643 235677888888888888888888888877765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-20 Score=191.63 Aligned_cols=329 Identities=10% Similarity=0.041 Sum_probs=158.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 036303 194 ALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAG 273 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (605)
.++..+.+.|++++|..+++..+... +-+...+..++.+....|+++.|...++.+.... |.+...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 34444555555555555555555542 2233444444444555555555555555555542 233444455555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 274 NLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCS 353 (605)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (605)
++++|...++++.... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 5555555555555432 223444455555555555555555555555443221 22222222 22445555555555555
Q ss_pred HHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHHHCC
Q 036303 354 QMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKE----TLRLYKEMLEAK 429 (605)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~ 429 (605)
.+......++......+...+...|++++|...++++.... +.+...+..+...+...|++++ |...++++++..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 55444322223333333444555555555555555555442 2234444445555555555543 455555555443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 036303 430 ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC 509 (605)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 509 (605)
|.+..++..++..+...|++++|+..+++++... +.+...+..+..++...|++++|+..++++.+ ..|+..
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-----P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~ 352 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-----PDLPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTS 352 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccch
Confidence 3344455555555555555555555555555432 22333444455555555555555555555554 233322
Q ss_pred H-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 510 T-YTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 510 ~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
. +..+..++...|++++|...++++++
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 22233444455555555555555554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-21 Score=188.65 Aligned_cols=297 Identities=18% Similarity=0.167 Sum_probs=130.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHH
Q 036303 235 CKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPD---VFTYNILIKGLCGVGQLE 311 (605)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 311 (605)
...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|...|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34444444444444444432 12233444444444444555555544444443211110 123344444444455555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH----HHHHHHHHHHHhcCCHHHHHHHH
Q 036303 312 GAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNV----VTFSSLIDGQCKAGNIDAAMGLY 387 (605)
Q Consensus 312 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~ 387 (605)
+|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+.. ..+..++..+...|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555544432 223344444455555555555555555554443221111 12233344444455555555555
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q 036303 388 TEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG 467 (605)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (605)
+++.+.. +.+...+..+...+...|++++|..+++++.+.+......++..++.+|...|++++|...++++...
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---- 278 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---- 278 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 5544432 11233444444445555555555555555544321111233444445555555555555555554442
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCcc
Q 036303 468 YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLR---AKRMLDVMMLLADMIKMGIVPD 542 (605)
Q Consensus 468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 542 (605)
.|+...+..++..+.+.|++++|.++++++.+ ..|+..++..++..+.. .|+..+++..++++++.++.|+
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 23333334444555555555555555555544 34454444444443332 2345555555555554444433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-19 Score=189.35 Aligned_cols=420 Identities=8% Similarity=0.002 Sum_probs=254.0
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 036303 118 DVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMD 197 (605)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 197 (605)
++....-.+....-.|+.++|++++....... +.+...+..+...+...|++++|..+|++..+..+. +...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 44444445555666777777777777766521 334445666777777777777777777776665322 3445556666
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 036303 198 GYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFE 277 (605)
Q Consensus 198 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (605)
.+...|++++|+..+++++... +.+.. +..+..++...|++++|...++++.+.. +.+...+..+...+...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 6677777777777777776652 33444 6666666667777777777777776653 2344444555666666666666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCH---HHHH
Q 036303 278 AMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGY-----CKEGDM---EKAL 349 (605)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~---~~a~ 349 (605)
|+..++.... .|+.. .-+. .. ....++... ...+++ ++|+
T Consensus 169 Al~~l~~~~~---~p~~~---~~l~-------~~-------------------~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 169 ALGAIDDANL---TPAEK---RDLE-------AD-------------------AAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred HHHHHHhCCC---CHHHH---HHHH-------HH-------------------HHHHHHHhhcccccChhHHHHHHHHHH
Confidence 7666655543 12210 0000 00 000001111 111122 5556
Q ss_pred HHHHHHhhC-CCCcCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036303 350 SVCSQMTEK-GVEPNVV-TF----SSLIDGQCKAGNIDAAMGLYTEMVIKSLV-PDVVVFTALIDGLSKDGNMKETLRLY 422 (605)
Q Consensus 350 ~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~ 422 (605)
..++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+...+.+ |+. ....+..+|...|++++|...|
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHH
Confidence 666665543 1111111 11 11122334557777777777777665421 221 1122455667777777777777
Q ss_pred HHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC-------CCCCcc---HHHHHHHHHHHHccCCH
Q 036303 423 KEMLEAKITP---SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDG-------GYCSPN---HVLYAAIIQALCYDGQI 489 (605)
Q Consensus 423 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~---~~~~~~l~~~~~~~g~~ 489 (605)
+++.+..... .......++.++...|++++|+..++++....+. ....|+ ...+..++..+...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 7766543111 1234455555667777777777777776654210 001233 23445677788889999
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHH
Q 036303 490 LKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSE 567 (605)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 567 (605)
++|++.++++.. ..|+ ...+..++..+...|++++|++.++++++ +.| +...+...+..+.+.|++++|...++
T Consensus 376 ~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 376 PQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999987 3454 55788888888899999999999999987 456 47788888889999999999999999
Q ss_pred HHHhcCCCCCCC
Q 036303 568 FLKESRIGSSET 579 (605)
Q Consensus 568 ~~~~~~~~~~~~ 579 (605)
++.+..|++..+
T Consensus 452 ~ll~~~Pd~~~~ 463 (765)
T PRK10049 452 DVVAREPQDPGV 463 (765)
T ss_pred HHHHhCCCCHHH
Confidence 999999987754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-19 Score=183.11 Aligned_cols=380 Identities=10% Similarity=0.014 Sum_probs=287.5
Q ss_pred HHHhcCChHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCh
Q 036303 61 AFSEMGHIEEALWVYRKIEV-----LPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDV 135 (605)
Q Consensus 61 ~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 135 (605)
.+.++.+++.-.-+|...+. ..+......++..+.+.|++++|..+++......+. +...+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCH
Confidence 45678888887777776531 122333455677888999999999999999887544 566667777778889999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 036303 136 MKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEM 215 (605)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 215 (605)
+.|...++++.+.. |.+...+..+...+...|++++|...+++.....+. +...+..++..+...|++++|...++.+
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 99999999999874 346778888999999999999999999999886433 5667888899999999999999999988
Q ss_pred HhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 036303 216 LHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVF 295 (605)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 295 (605)
.... +.+...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|+..++...... +.+..
T Consensus 171 ~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~ 247 (656)
T PRK15174 171 AQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAA 247 (656)
T ss_pred HHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 7653 2233333333 3477889999999999998776433444445556678888999999999999988764 44567
Q ss_pred hHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 036303 296 TYNILIKGLCGVGQLEG----AEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLI 371 (605)
Q Consensus 296 ~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 371 (605)
.+..+...+...|++++ |...++++.... +.+...+..+...+...|++++|...++++.... +.+...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 77788888899999885 788888888764 3467788888888999999999999999988874 33566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 372 DGQCKAGNIDAAMGLYTEMVIKSLVPDV-VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRI 450 (605)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (605)
.++...|++++|...++++... .|+. ..+..+..++...|++++|...|++.++.. |+.. ...+
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~--P~~~-----------~~~~ 390 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR--ASHL-----------PQSF 390 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--hhhc-----------hhhH
Confidence 8888999999999999888876 3333 334445667888899999999999888763 3221 2344
Q ss_pred HHHHHHHHHhhhc
Q 036303 451 SNALNFFLEKTDK 463 (605)
Q Consensus 451 ~~A~~~~~~~~~~ 463 (605)
++|...+.+....
T Consensus 391 ~ea~~~~~~~~~~ 403 (656)
T PRK15174 391 EEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHHHHh
Confidence 5566666665554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-19 Score=184.27 Aligned_cols=430 Identities=13% Similarity=0.007 Sum_probs=291.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 036303 82 PAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILI 161 (605)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (605)
-+.......+.+....|+.++|++++.++.... +.+...+..+..++...|++++|..++++.++.. +.+...+..++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 445555667778889999999999999998742 4456679999999999999999999999998873 44677788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 036303 162 HGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELR 241 (605)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 241 (605)
.++...|++++|...++++.+..+. +.. +..+..++...|++++|+..++++.+.. +.+...+..+...+...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 9999999999999999999987443 555 8888999999999999999999999874 445666677888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH---HHHHHHHH
Q 036303 242 AAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQL---EGAEGLLQ 318 (605)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~ 318 (605)
.|...++.+.. .|+.. .-+ ....+........ .......+++ ++|+..++
T Consensus 168 ~Al~~l~~~~~---~p~~~---~~l-------~~~~~~~~~r~~~--------------~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 168 PALGAIDDANL---TPAEK---RDL-------EADAAAELVRLSF--------------MPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHHHHHHhCCC---CHHHH---HHH-------HHHHHHHHHHhhc--------------ccccChhHHHHHHHHHHHHHH
Confidence 99998877664 23210 000 0000000000000 0000111122 55566666
Q ss_pred HHHHC-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 319 KMYKE-GILANVV-TY----NSLIDGYCKEGDMEKALSVCSQMTEKGVE-PNVVTFSSLIDGQCKAGNIDAAMGLYTEMV 391 (605)
Q Consensus 319 ~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 391 (605)
.+.+. ...|+.. .+ ...+..+...|++++|+..|+++.+.+.+ |+. ....+...|...|++++|+..|+++.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 65543 1112111 11 11122334556777777777777665422 221 22224566777777777777777766
Q ss_pred HCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHH
Q 036303 392 IKSLVP---DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKI-----------TPS---VFTVSSLIHGLFKNGRISNAL 454 (605)
Q Consensus 392 ~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~ 454 (605)
...... .......+..++...|++++|..+++.+..... .|+ ......++..+...|++++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 542111 123344555566777777777777777766421 122 234556677788899999999
Q ss_pred HHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 455 NFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN-CTYTTMLRGLLRAKRMLDVMMLLAD 533 (605)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 533 (605)
+.++++.... +.+...+..++..+...|++++|++.++++.+ +.|+. ..+..++..+...|++++|...+++
T Consensus 380 ~~l~~al~~~-----P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 380 MRARELAYNA-----PGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred HHHHHHHHhC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999988764 55677888888889999999999999999988 56764 4666666778889999999999999
Q ss_pred HHHCCCCccHHHHHHHHHHH
Q 036303 534 MIKMGIVPDAVINQVMVRGY 553 (605)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~~~ 553 (605)
+++ ..|+......+.+.+
T Consensus 453 ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 453 VVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHH--hCCCCHHHHHHHHHH
Confidence 987 456655444444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-20 Score=181.32 Aligned_cols=304 Identities=13% Similarity=0.065 Sum_probs=250.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 036303 265 LIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILAN---VVTYNSLIDGYCK 341 (605)
Q Consensus 265 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 341 (605)
....+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999865 34566888899999999999999999999987642222 2467888999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHH
Q 036303 342 EGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDV----VVFTALIDGLSKDGNMKE 417 (605)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 417 (605)
.|+++.|..+|+++.+.. +++..++..++..+...|++++|.+.++.+...+..+.. ..+..++..+...|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999998863 456788999999999999999999999999887533322 234567777889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHH
Q 036303 418 TLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFS 497 (605)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (605)
|...++++.+.. +.+...+..++..+.+.|++++|+++++++....+ .....++..++.+|...|++++|.+.++
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP----EYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh----hhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999865 45567888899999999999999999999987531 1224567888999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh---cCChhHHHHHHHHHHhcCC
Q 036303 498 DMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQE---NGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 498 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~ 574 (605)
++.+ ..|+...+..++..+.+.|++++|...++++++ ..|+...+..+...+.. .|+.++|...++++.+..+
T Consensus 274 ~~~~--~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALE--EYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHH--hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 9998 567777778899999999999999999999987 46887777777766654 5689999999999987665
Q ss_pred CCCCC
Q 036303 575 GSSET 579 (605)
Q Consensus 575 ~~~~~ 579 (605)
...|.
T Consensus 350 ~~~p~ 354 (389)
T PRK11788 350 KRKPR 354 (389)
T ss_pred hCCCC
Confidence 55544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-18 Score=170.89 Aligned_cols=455 Identities=11% Similarity=0.026 Sum_probs=281.5
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE-VLPAI-QACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVL 125 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 125 (605)
.|..+.....-+....++|+++.|+..|+++. ..|+. .....++..+...|+.++|+..+++.... .+........+
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llal 108 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASA 108 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHH
Confidence 44466666667777888899999999998873 33432 23337788888889999999999988721 11223334444
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCh
Q 036303 126 IDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADV 205 (605)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 205 (605)
...+...|++++|+++++++.+..+ .+...+..++..+...++.++|++.++++... .|+...+..++..+...++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 6688888999999999999988853 35677777888888899999999999988875 34555554444444445666
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 206 NRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEM 285 (605)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 285 (605)
.+|++.++++.+.. +.+...+..+.....+.|-...|.++...-. +..+-...... +.+.|.+..+..
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~vr~a 253 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQVRMA 253 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHHhhc
Confidence 66899999988874 4467777888888888888888887666533 22111111110 111222222111
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036303 286 EKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKE-GI-LANVV----TYNSLIDGYCKEGDMEKALSVCSQMTEKG 359 (605)
Q Consensus 286 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 359 (605)
..+...- -. +.--.+.|+.-++.+... +. ++... ...-.+.++...++..++++.|+.+...+
T Consensus 254 ----~~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~ 322 (822)
T PRK14574 254 ----VLPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG 322 (822)
T ss_pred ----ccccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence 1111000 00 111234455555555542 11 22211 22234456778888999999999998877
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----
Q 036303 360 VEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSL-----VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKI---- 430 (605)
Q Consensus 360 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---- 430 (605)
.+....+-..+..+|...+++++|..+|.++..... +++......|..++...+++++|..+++++.+...
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 665566778888899999999999999988876531 22333456778888888889999888888887311
Q ss_pred -------CCC--H-HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036303 431 -------TPS--V-FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMR 500 (605)
Q Consensus 431 -------~~~--~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (605)
.|+ - .....++..+.-.|++.+|.+.++++.... |-|...+..+...+...|++.+|++.++.+.
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-----P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-----PANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 011 1 112233444555566666666666655542 4445555555555666666666666665544
Q ss_pred hCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 501 SDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 501 ~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
. +.|+.. +....+.++...|++.+|..+.....+
T Consensus 478 ~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 478 S--LAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred h--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4 344332 444455555555666666665555554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-17 Score=167.96 Aligned_cols=463 Identities=13% Similarity=0.042 Sum_probs=287.7
Q ss_pred hHHHHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCH-HhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHH
Q 036303 12 KNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNP-SVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNAL 90 (605)
Q Consensus 12 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 90 (605)
..+...+...+. ..+.++.. .+...|+.+... .|.++ .++ .++..+...|+.++|+..+++...+.+...+..+
T Consensus 32 ~~~~~~y~~aii-~~r~Gd~~-~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 32 AMADTQYDSLII-RARAGDTA-PVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred cchhHHHHHHHH-HHhCCCHH-HHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 344445555554 35666666 777777776433 34443 344 8888899999999999999998643344444444
Q ss_pred --HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036303 91 --LNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNEN 168 (605)
Q Consensus 91 --~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (605)
+..+...|++++|+++|+++.+..+. ++..+..++..+...++.++|++.++++... .|+...+..++..+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 66888999999999999999998644 6778888889999999999999999999887 556555555555555567
Q ss_pred CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 036303 169 KMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFV 248 (605)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 248 (605)
+..+|++.++++.+..+. +...+..+..++.+.|-...|+++..+- |+..+-...... +.+.+.+..+
T Consensus 184 ~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr 251 (822)
T PRK14574 184 RNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVR 251 (822)
T ss_pred hHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHh
Confidence 776799999999997543 6777788889999999999999877652 332221111110 0111111111
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCh-hhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 249 HMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKF-EISPDV-FTY----NILIKGLCGVGQLEGAEGLLQKMYK 322 (605)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~A~~~~~~~~~ 322 (605)
... .++..- . . +---.+.|+.-++.+... +..|.. ..| .-.+-++...++..+++..++.+..
T Consensus 252 ~a~----~~~~~~-~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 252 MAV----LPTRSE-T---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred hcc----cccccc-h---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 110 000000 0 0 000122333333333221 001111 111 1122344455556666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 036303 323 EGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKG-----VEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSL-- 395 (605)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 395 (605)
.+.+....+-..+..+|...+++++|..+++.+.... .+++......|.-++...+++++|..+++.+.....
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 5544344455555666666666666666666554432 111222234555556666666666666666655211
Q ss_pred ---------CC--CHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 036303 396 ---------VP--DVV-VFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 396 ---------~~--~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (605)
.| |-. .+..++..+...|+..+|.+.++++.... |-|......+...+...|.+.+|...++.....
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 12 211 23345666778888999999998887765 678888888888888889999998888776654
Q ss_pred cCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 036303 464 TDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTT 513 (605)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 513 (605)
. +.+..+....+.++...|++++|.++.+.+.+ ..|+......
T Consensus 480 ~-----P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~ 522 (822)
T PRK14574 480 A-----PRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQE 522 (822)
T ss_pred C-----CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHH
Confidence 2 44456666777788888899999888888887 5566554333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-17 Score=159.35 Aligned_cols=538 Identities=14% Similarity=0.074 Sum_probs=369.2
Q ss_pred cHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036303 34 VCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMV 111 (605)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 111 (605)
.|..++..+-.. .|..+.+|.+|+..|-..|+.++++..+-.+ ..+.+...|..+.....+.|++++|.-.|.+++
T Consensus 157 eA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 157 EAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred HHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 555555544222 5668889999999999999999999987655 466778999999999999999999999999999
Q ss_pred HCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 036303 112 LCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTI----LIHGLCNENKMVEAESMFRSMREC-GVV 186 (605)
Q Consensus 112 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~-~~~ 186 (605)
+..++ +....-.-...|-+.|+...|...|.++.+..++.|..-+.. .+..+...++.+.|.+.++..... +-.
T Consensus 235 ~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~ 313 (895)
T KOG2076|consen 235 QANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE 313 (895)
T ss_pred hcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 98644 555555566788899999999999999999854334333333 455566778889999999888763 223
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHhCC---------------------------CCCCcchHHHHHHHHHhcCC
Q 036303 187 PNLYTYNALMDGYCKVADVNRALEFYHEMLHHN---------------------------LQPNVVTFGVLMDGLCKVGE 239 (605)
Q Consensus 187 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~~~~ 239 (605)
.+...++.++..+.+...++.+......+.... ..++... ..++-++.+...
T Consensus 314 ~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~ 392 (895)
T KOG2076|consen 314 ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKE 392 (895)
T ss_pred ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccc
Confidence 356678999999999999999999888877621 1122222 123334445555
Q ss_pred HHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 036303 240 LRAAGNFFVHMAKFG--VFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLL 317 (605)
Q Consensus 240 ~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 317 (605)
.+....+........ +.-+...|..+..+|...|++.+|+.+|..+.......+...|..+..+|...|.++.|...+
T Consensus 393 ~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y 472 (895)
T KOG2076|consen 393 RELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFY 472 (895)
T ss_pred cchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 555555555555555 333566788899999999999999999999998766666788999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--------CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 318 QKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTE--------KGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTE 389 (605)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 389 (605)
++++... +.+...-..|...+.+.|+.++|.+.+..+.. .+..|+..........+...|+.++-+.+-..
T Consensus 473 ~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 473 EKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999874 33556677788889999999999999998542 23455555566667788888998887666555
Q ss_pred HHHCC----------------------CCCCHhhHHHHHHHHHhcCCHHHHHHHHH------HHHHCCCCCCH--HHHHH
Q 036303 390 MVIKS----------------------LVPDVVVFTALIDGLSKDGNMKETLRLYK------EMLEAKITPSV--FTVSS 439 (605)
Q Consensus 390 ~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~------~~~~~~~~~~~--~~~~~ 439 (605)
++... ..........+..+-.+.++......-.. -....++..+. ..+..
T Consensus 552 Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e 631 (895)
T KOG2076|consen 552 LVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRE 631 (895)
T ss_pred HHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHH
Confidence 54321 01111222233333333333222111111 11112222222 24566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHH---HH-HHHHHHHHccCCHHHHHHHHHHHHhC-CC--CCCHH-HH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHV---LY-AAIIQALCYDGQILKASKLFSDMRSD-NL--RPDNC-TY 511 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~p~~~-~~ 511 (605)
++.++.+.+++.+|+.+...+..... +..+.. .+ ...+.+....+++..|...++.|... +. .|... .|
T Consensus 632 ~i~~L~k~~r~qeAl~vv~~a~~~~~---f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 632 LILSLAKLQRVQEALSVVFTALEAYI---FFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhh---hhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 77788999999999999998877532 122222 22 34556677889999999999998863 11 33323 44
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 512 TTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
+...+.....++-.--.+++..+.......++......+..+..++.+..|+..+-++...+|+++..
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~ 776 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLI 776 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHH
Confidence 43444555555433333333333322211124455556777889999999999999999999986654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-16 Score=145.41 Aligned_cols=457 Identities=11% Similarity=0.026 Sum_probs=316.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 99 KFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFR 178 (605)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 178 (605)
+.+.|+-++.+..+. .+.+...| .++.+..-++.|..++++..+. ++.+..+|..-...--.+|+.+...+++.
T Consensus 391 ~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 391 EPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 344455555555554 22233333 3445566778888888887775 56677778777777777888887777765
Q ss_pred HH----HHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 179 SM----RECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQP--NVVTFGVLMDGLCKVGELRAAGNFFVHMAK 252 (605)
Q Consensus 179 ~~----~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (605)
+- ...|+..+...|..=...+-+.|..-.+..+....+.-|+.. ...|+..-...|.+.+.++-|..+|...++
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 43 345777777778777777777888888888877777665432 245677777888888888888888888877
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036303 253 FGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTY 332 (605)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 332 (605)
.- +.+...|......--..|..++...+|++....- +.....|......+-..|+...|..++..+.+.... +...|
T Consensus 545 vf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiw 621 (913)
T KOG0495|consen 545 VF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIW 621 (913)
T ss_pred hc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHH
Confidence 42 4455666666666666788888888888887753 344455666666777788999999988888877533 66778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 036303 333 NSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKD 412 (605)
Q Consensus 333 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (605)
...+..-.....+++|..+|.+.... .|+...|..-+...-..++.++|++++++.++. ++.-...|..+.+.+...
T Consensus 622 laavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHH
Confidence 88888888888899999999888775 456677776666667778889999998888876 233345777778888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHH
Q 036303 413 GNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKA 492 (605)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 492 (605)
++.+.|...|..-.+. .|.....|..+...--+.|.+-.|..++++...+. +.+...|...+++-.+.|..+.|
T Consensus 699 ~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-----Pk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-----PKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-----CCcchhHHHHHHHHHHcCCHHHH
Confidence 8888888888776654 25556677777777778888888988888887764 56778888888888888998888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 493 SKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
..+..++++. .+.+...|..-+...-+.++-.+....+++ ..-|+.+...++..+....+++.|+++|+++.+.
T Consensus 773 ~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 773 ELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 8888777762 222333454444444444443232222221 2335555666666666666666666666666666
Q ss_pred CCCCCCC
Q 036303 573 RIGSSET 579 (605)
Q Consensus 573 ~~~~~~~ 579 (605)
+|.....
T Consensus 847 d~d~GD~ 853 (913)
T KOG0495|consen 847 DPDNGDA 853 (913)
T ss_pred CCccchH
Confidence 6665544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-15 Score=136.24 Aligned_cols=469 Identities=12% Similarity=0.063 Sum_probs=354.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDC 128 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (605)
+-..|...+.-=..++++..|..+|+.+ ....++..|...+.+-.++.....|..++++++..=+. -...|...+.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHH
Confidence 4456777777777889999999999988 35678889999999999999999999999999886322 22356666666
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHH
Q 036303 129 CCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRA 208 (605)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 208 (605)
--..|++..|.++|++..+- .|+..+|++.+..-.+.+.++.|..+++..+- +.|+..+|.-....-.+.|....+
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 67789999999999999876 89999999999999999999999999999887 468999999999999999999999
Q ss_pred HHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHH---
Q 036303 209 LEFYHEMLHH-NL-QPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPN--IFVYNCLIDGHCKAGNLFEAMSL--- 281 (605)
Q Consensus 209 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--- 281 (605)
..+|....+. |- ..+...+...+..-.+...++.|.-+|+.++.. ++.+ ...|..+...--+-|+.....+.
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 9999988765 21 112233444444445677889999999988875 2333 44555555554555665444332
Q ss_pred -----HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH--------HHHhcCCHH
Q 036303 282 -----CSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANV--VTYNSLID--------GYCKEGDME 346 (605)
Q Consensus 282 -----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~~~~~~ 346 (605)
++.+.+.+ +.|-.+|--.+..-...|+.+...+++++.+..- +|-. ..|...|- .-....+.+
T Consensus 306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33444433 5677788888888888899999999999998863 3321 12222221 124578899
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036303 347 KALSVCSQMTEKGVEPNVVTFSSLIDGQ----CKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLY 422 (605)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 422 (605)
.+.++|+..++. +|....||..+--.| .++.++..|.+++...+.. .|...+|...+..-.+.++++....+|
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999985 566666766554444 4578999999999988744 788899999999989999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 036303 423 KEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD 502 (605)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (605)
++.++-+ |.+..+|...+..-...|+.+.|..+|+-+++... ..-....|.+.|..-...|.++.|..+++++++.
T Consensus 461 Ekfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~---ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 461 EKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPA---LDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc---cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 9999987 67788899988888899999999999999887532 2233456777778788899999999999999984
Q ss_pred CCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 036303 503 NLRPDNCTYTTMLRGLL-----RAK-----------RMLDVMMLLADMIK 536 (605)
Q Consensus 503 ~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 536 (605)
. +-..+|-..+.--. ..+ ....|..+|+++..
T Consensus 537 t--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 537 T--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred c--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 3 33345555544322 223 46678888888764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-18 Score=151.04 Aligned_cols=477 Identities=14% Similarity=0.090 Sum_probs=314.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc---CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HhHHHH
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKI---EVLPAI-QACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADV----VTYGVL 125 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l 125 (605)
++..|+.-|..+..+.+|+..|+-+ ...|+. ..-..+...+.+..++.+|+.+|+-.+..-+..+- .+.+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 4566777788888888888888765 222332 12234566777888888998888877765322222 245555
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH--------HHHHH
Q 036303 126 IDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTY--------NALMD 197 (605)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--------~~l~~ 197 (605)
...+.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+|+..-..||..-| ..|+.
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 56677889999999999888876 567665555666777788888888888888765433333222 22222
Q ss_pred HHhccCC-----------hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 036303 198 GYCKVAD-----------VNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLI 266 (605)
Q Consensus 198 ~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 266 (605)
-..++.. -++++-.-.+++.--+.|+- .. | .+-..+.++.-.-. +.-...-..-.
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f---a~--------g-~dwcle~lk~s~~~--~la~dlei~ka 426 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF---AA--------G-CDWCLESLKASQHA--ELAIDLEINKA 426 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch---hc--------c-cHHHHHHHHHhhhh--hhhhhhhhhHH
Confidence 2222111 11111111111111111111 00 0 01111111111000 00000111123
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036303 267 DGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCG--VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGD 344 (605)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (605)
.-|.+.|+++.|+++++-..+.+.+.-+..-+.+-..+.- -.++.+|..+-+.....+ .-+......-.......|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 3578899999999999988775433333333333333332 235777777776665543 2344444444444556899
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 345 MEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKE 424 (605)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 424 (605)
+++|...|++.+..+..- ......+.-.+...|++++|++.|-.+... +..+...+..+...|....+...|++++.+
T Consensus 506 ~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999998874322 223333455677899999999999877543 234777888889999999999999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 036303 425 MLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNL 504 (605)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (605)
.... ++.|+.++..|...|-+.|+-.+|.+.+-+...- ++-+..+..-+...|....-+++|+.+|+++.- +
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-----fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-----FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-----cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 8764 5788999999999999999999998887655443 577788888888889999999999999999876 8
Q ss_pred CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 036303 505 RPDNCTYTTMLRGLL-RAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGD 558 (605)
Q Consensus 505 ~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 558 (605)
.|+..-|..++..|. +.|++++|..++++.-+ .++.|..++..|++.+...|-
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 999999999888765 68999999999998764 466789999999999988884
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-15 Score=137.17 Aligned_cols=479 Identities=10% Similarity=0.051 Sum_probs=363.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 036303 81 LPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTIL 160 (605)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (605)
..+...|...++.-..++++..|..+|++++... ..+...|...+.+-.+...+..|..++++....= |.-...|.-.
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY 147 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHH
Confidence 3566778888888888999999999999999875 4478889999999999999999999999998862 3233456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH
Q 036303 161 IHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGEL 240 (605)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (605)
+.+--..|++..|.++|+.-.+ ..|+..+|.+.|..-.+.+.++.|..+|++.+-. .|++.+|...+..-.+.|..
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcH
Confidence 6666778999999999999887 4789999999999999999999999999999874 69999999999999999999
Q ss_pred HHHHHHHHHHHHC-C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHH
Q 036303 241 RAAGNFFVHMAKF-G-VFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPD--VFTYNILIKGLCGVGQLEGAEGL 316 (605)
Q Consensus 241 ~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~ 316 (605)
..+..++..+.+. | -..+...+.+....-.++..++.|.-+|+-...+= +.+ ...|..+...--+.|+.......
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 9999999988763 1 11234456666666677888999999998887742 222 23444444433445654433322
Q ss_pred --------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH--HHHHHHHHH--------HHhcC
Q 036303 317 --------LQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNV--VTFSSLIDG--------QCKAG 378 (605)
Q Consensus 317 --------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~ 378 (605)
++.+.+.+ +.|-.+|-..+......|+.+...++|++++.. ++|-. ..|...+-. -....
T Consensus 303 Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444 558888999999989999999999999999987 44422 122222211 13468
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036303 379 NIDAAMGLYTEMVIKSLVPDVVVFTALIDGL----SKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNAL 454 (605)
Q Consensus 379 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 454 (605)
+.+.+.++|+..++. ++....||..+--.| .++.+...|.+++...+. ..|...++...+..-.+.++++.+.
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHH
Confidence 999999999999884 444555666554444 467889999999998874 5789999999999999999999999
Q ss_pred HHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 455 NFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLAD 533 (605)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 533 (605)
.+|++.+.-. +.+-.+|......-...|+.+.|..+|+-+++.....- ...|...++--...|.+++|..++++
T Consensus 458 kLYEkfle~~-----Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 458 KLYEKFLEFS-----PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred HHHHHHHhcC-----hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHH
Confidence 9999999864 56678888888777889999999999999987432111 22566666666688999999999999
Q ss_pred HHHCCCCccHHHHHHHHHHHH-----hcC-----------ChhHHHHHHHHHHhcCCCCCC
Q 036303 534 MIKMGIVPDAVINQVMVRGYQ-----ENG-----------DLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~~~~~~ 578 (605)
+++. .+...+|...+..-. +.| +...|+.+|+++...-.+..+
T Consensus 533 lL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~ 591 (677)
T KOG1915|consen 533 LLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTP 591 (677)
T ss_pred HHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCc
Confidence 9973 455557776665443 445 677899999988765444443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-15 Score=138.43 Aligned_cols=482 Identities=12% Similarity=0.038 Sum_probs=390.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHh
Q 036303 91 LNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMI----DKGIEPTVVIYTILIHGLCN 166 (605)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~ 166 (605)
..+|.+..-|+.|..+++...+. ++.+..+|......--.+|+.+...+++.+-+ ..|+..+...|..=...+-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 34556667899999999999886 77799999999888889999999999887654 44888899999988899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 036303 167 ENKMVEAESMFRSMRECGVVPN--LYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAG 244 (605)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 244 (605)
.|..-.+..+....+..|+.-. ..||..-...|.+.+.++-|..+|...++. ++-+...|......--..|..+...
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 9999999999999888876522 358888899999999999999999998876 3556667777777777789999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 245 NFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEG 324 (605)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 324 (605)
.++.++.... +.....|-.....+-..|+...|..++.+..+.. +.+...|...+.......+++.|..+|.+....
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 9999998863 4555666667777888999999999999998865 346677888888889999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 036303 325 ILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTA 404 (605)
Q Consensus 325 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 404 (605)
.|+...|..-+..-.-.++.++|.+++++.++. ++.-...|..+.+.+-+.++.+.|.+.|..-.+. .+..+..|..
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 456677766666667788999999999999886 3334567888889999999999999999877665 3445667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC 484 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 484 (605)
+...-.+.|+.-.|..+++...-.+ |.+...|...+.+-.+.|..+.|..+..++++. ++.+...|..-|....
T Consensus 725 LakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-----cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-----CPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCccchhHHHHHHhcc
Confidence 7777788899999999999998876 678889999999999999999999999999987 4666677887777777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHH
Q 036303 485 YDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAF 563 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 563 (605)
+.++-..++..+++. .-|+.....+...+....++++|.+.|+++.+ +.|| ..+|..+...+.+.|.-++-.
T Consensus 799 ~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred CcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHH
Confidence 777766666666654 34777777888888889999999999999998 4454 777888888999999999999
Q ss_pred HHHHHHHhcCCCCCCCCccchhhhhhcccccccc
Q 036303 564 RCSEFLKESRIGSSETEGHTTRSFLGHLKPTVYK 597 (605)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (605)
.++++.....|...+ .-.++.+..+++..+
T Consensus 872 ev~~~c~~~EP~hG~----~W~avSK~i~n~~~t 901 (913)
T KOG0495|consen 872 EVLKKCETAEPTHGE----LWQAVSKDIKNWRKT 901 (913)
T ss_pred HHHHHHhccCCCCCc----HHHHHhhhHHhccCC
Confidence 999999887765443 334444444444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-15 Score=142.23 Aligned_cols=527 Identities=13% Similarity=0.060 Sum_probs=361.6
Q ss_pred CCHHhHH--HHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 036303 50 FNPSVFS--TLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVL 125 (605)
Q Consensus 50 ~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 125 (605)
.++.+-. ..+....-.|++++|.+++.++ ..+.+..+|..|...|-++|+.+++...+-.+...++. |...|..+
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~l 213 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRL 213 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHH
Confidence 3454443 3344455569999999999998 57778899999999999999999999888777776544 77899999
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH----HHHHHHhc
Q 036303 126 IDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYN----ALMDGYCK 201 (605)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~----~l~~~~~~ 201 (605)
.....+.|+++.|.-.|.++++.. +++....-.-+..|-+.|+...|...|.++....++.|..-.. .++..+..
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985 4455555567788999999999999999999875422322222 34556667
Q ss_pred cCChHHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------------------
Q 036303 202 VADVNRALEFYHEMLHH-NLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFG-------------------------- 254 (605)
Q Consensus 202 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------------- 254 (605)
.++.+.|++.++..... +-..+...++.++..+.+...++.+...........
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 77779999999888773 224466778888899999999999988877765511
Q ss_pred -CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 036303 255 -VFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFE--ISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVT 331 (605)
Q Consensus 255 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 331 (605)
..++..++ .++-++...+..+....+...+.... +.-+...|.-+..++...|++.+|+.++..+......-+...
T Consensus 373 ~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 11222231 12223333344444444444444444 333456788899999999999999999999998766667889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHhhHH
Q 036303 332 YNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVI--------KSLVPDVVVFT 403 (605)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~ 403 (605)
|-.+..+|...|.++.|...|+.++... +.+...-..|...+.+.|+.++|.+.+..+.. .+..|+.....
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 9999999999999999999999999874 34666777888999999999999999988552 23345555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 036303 404 ALIDGLSKDGNMKETLRLYKEMLEAK----------------------ITPSVFTVSSLIHGLFKNGRISNALNFFLEKT 461 (605)
Q Consensus 404 ~l~~~~~~~g~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (605)
.....+...|+.++-+.+...|+... .+-.......+..+-.+.++............
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~ 610 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGT 610 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchh
Confidence 66677788888887666555544311 11111222233333333333222222111110
Q ss_pred hc--cCCCCCCccH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHH---HHH-HHHHHHHhcCCHHHHHHHHH
Q 036303 462 DK--TDGGYCSPNH--VLYAAIIQALCYDGQILKASKLFSDMRSDNL-RPDNC---TYT-TMLRGLLRAKRMLDVMMLLA 532 (605)
Q Consensus 462 ~~--~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~---~~~-~l~~~~~~~g~~~~A~~~~~ 532 (605)
.. ....++.-+. ..+.-++.++.+.+++++|..+...+.+... .-+.. .+. ..+.++...+++..|...+.
T Consensus 611 ~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR 690 (895)
T KOG2076|consen 611 EFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLR 690 (895)
T ss_pred hhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00 0000111111 2234556678899999999999999887422 11222 233 34455668999999999999
Q ss_pred HHHHC-CC--Ccc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCC
Q 036303 533 DMIKM-GI--VPD-AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETE 580 (605)
Q Consensus 533 ~~~~~-~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 580 (605)
.|+.. +. .|. ...|+.......+.|+-..-.+.+..+...+|.++++.
T Consensus 691 ~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l 742 (895)
T KOG2076|consen 691 SVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPL 742 (895)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcce
Confidence 99853 22 232 44555566677788887777888888888888775543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-17 Score=143.56 Aligned_cols=460 Identities=14% Similarity=0.120 Sum_probs=305.9
Q ss_pred HHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC-CCC------CHHHHHHHHHHHHhcCChhHHHHHH
Q 036303 35 CYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE-VLP------AIQACNALLNGLIKKGKFDSVWEFY 107 (605)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~------~~~~~~~l~~~~~~~~~~~~A~~~~ 107 (605)
+...|+.+.....++.....-..+...+.+..++.+|+++|+-.. .-| .+...+.+...+++.|+++.|+..|
T Consensus 220 alntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsf 299 (840)
T KOG2003|consen 220 ALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSF 299 (840)
T ss_pred HhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhH
Confidence 344455555556666555555677788999999999999998652 222 2455677778889999999999999
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHH--------HHHHHHHHhcCCH--------H
Q 036303 108 EEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIY--------TILIHGLCNENKM--------V 171 (605)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~--------~ 171 (605)
+..... .|+..+-..|+-++...|+.++..+.|.+|+.....+|..-| ..|+.--.+...+ .
T Consensus 300 dh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka 377 (840)
T KOG2003|consen 300 DHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKA 377 (840)
T ss_pred HHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhh
Confidence 999886 577777666777777889999999999999875333322211 1222222211111 1
Q ss_pred HHHHHHH---HHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 036303 172 EAESMFR---SMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFV 248 (605)
Q Consensus 172 ~a~~~~~---~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 248 (605)
.|.+..- +++.--+.|+-. --.+-+++.++.-... +.-...-..-...+.+.|+++.|.++++
T Consensus 378 ~aek~i~ta~kiiapvi~~~fa------------~g~dwcle~lk~s~~~--~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 378 DAEKAIITAAKIIAPVIAPDFA------------AGCDWCLESLKASQHA--ELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hHHHHHHHHHHHhccccccchh------------cccHHHHHHHHHhhhh--hhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 1222111 111111111100 0112223333222211 1111111122345778999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036303 249 HMAKFGVFPNIFVYNCLIDGHCK--AGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGIL 326 (605)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 326 (605)
-..+..-......-+.|...+.- -.++..|...-+.....+ .-+......-.......|++++|...+++....+-.
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 88775433333333333333222 346777777776665432 122222222223334579999999999999876322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 036303 327 ANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALI 406 (605)
Q Consensus 327 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 406 (605)
-....| .+.-.+-..|++++|++.|-++... +..+..+...+...|....+...|++++.+.... ++.|+..++.|.
T Consensus 523 c~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 CTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 112222 2334567889999999999887654 2347788888999999999999999999888765 567899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH-c
Q 036303 407 DGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC-Y 485 (605)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 485 (605)
..|-+.|+-..|.+.+-+.-.. ++.+..+...|...|....-+++|+.+|+++.- +.|+..-|..++..|. +
T Consensus 600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal------iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL------IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh------cCccHHHHHHHHHHHHHh
Confidence 9999999999998876655443 477899999999999999999999999998865 5899999987776554 7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036303 486 DGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAK 522 (605)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (605)
.|++++|.++++...+. ++.|..++.-|++.|...|
T Consensus 673 sgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 89999999999998873 5667778888898887665
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-14 Score=127.68 Aligned_cols=422 Identities=16% Similarity=0.206 Sum_probs=276.8
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH--HHccCChhHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 95 IKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDC--CCGQGDVMKA-LNLFDEMIDKGIEPTVVIYTILIHGLCNENKMV 171 (605)
Q Consensus 95 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 171 (605)
+.+|....+.-+|++|...|++.+...-..|++. |....++.-| .+.|-.|...| +.+..+| +.|.+.
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vA 196 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVA 196 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHH
Confidence 4556666777777777777666666555555433 2222232211 12222333332 1122222 234333
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 172 EAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMA 251 (605)
Q Consensus 172 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 251 (605)
+ -+|+... -+..++..||.+.++-...+.|.++|++......+.+..+|+.++.+-. +....++..+|.
T Consensus 197 d--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMi 265 (625)
T KOG4422|consen 197 D--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMI 265 (625)
T ss_pred H--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHH
Confidence 2 2233222 2778999999999999999999999999887766788888988887643 333378889999
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHC---
Q 036303 252 KFGVFPNIFVYNCLIDGHCKAGNLFEA----MSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEG-AEGLLQKMYKE--- 323 (605)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~--- 323 (605)
...+.||..++|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++...
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 888999999999999999999988765 5677888999999999999999999988887644 44444444431
Q ss_pred -CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 324 -GI----LANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKG----VEPN---VVTFSSLIDGQCKAGNIDAAMGLYTEMV 391 (605)
Q Consensus 324 -~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 391 (605)
.+ +-|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.-...|+.++
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12 2244556677788888889888888776665431 2233 2345667777788888999999999999
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CH--------HH-----HHHHH
Q 036303 392 IKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG-RI--------SN-----ALNFF 457 (605)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~-----A~~~~ 457 (605)
-.-.-|+..+...++++..-.|.++-.-++|.+++..|..........+...+++.. +. .. |..++
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 887788888999999999999999999999999988775555555444444444332 11 00 11111
Q ss_pred ---HHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-C---CCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 458 ---LEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNL-R---PDNCTYTTMLRGLLRAKRMLDVMML 530 (605)
Q Consensus 458 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~---p~~~~~~~l~~~~~~~g~~~~A~~~ 530 (605)
+....+... ..-.....+.++-.+.+.|+.++|.+++.-+.+.+. - |.......+++...+.++...|+..
T Consensus 506 e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 506 EAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 111111110 123344556666667788888888888877755321 2 2333344566666677788888888
Q ss_pred HHHHHHCC
Q 036303 531 LADMIKMG 538 (605)
Q Consensus 531 ~~~~~~~~ 538 (605)
++-|....
T Consensus 584 lQ~a~~~n 591 (625)
T KOG4422|consen 584 LQLASAFN 591 (625)
T ss_pred HHHHHHcC
Confidence 87776543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-13 Score=122.84 Aligned_cols=428 Identities=14% Similarity=0.140 Sum_probs=230.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcC---CCCCHHHHHHHHHH--HHhcCChhHH-HHHHHHHHHCCC---------
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKIE---VLPAIQACNALLNG--LIKKGKFDSV-WEFYEEMVLCGL--------- 115 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~--~~~~~~~~~A-~~~~~~~~~~~~--------- 115 (605)
+...=+.|+... .+|.+.++.-+|+.+. ++.+......+++. |....+..-| ++.|-.|...|-
T Consensus 115 ~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 333445565544 4589999999999883 44455555555433 3333332222 233334433321
Q ss_pred ----------CCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 116 ----------VADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGV 185 (605)
Q Consensus 116 ----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 185 (605)
+-...++..+|.++++--..++|.+++++-.....+.+..+||.+|.+-.-... .+++.+|.....
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 224456666666666666666666666666555455566666666654332221 456666666666
Q ss_pred CCCcccHHHHHHHHhccCChHH----HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCC-
Q 036303 186 VPNLYTYNALMDGYCKVADVNR----ALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRA-AGNFFVHMAK----FGV- 255 (605)
Q Consensus 186 ~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~- 255 (605)
.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+++.++..+ +..++.++.. ..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 6666666666666666665543 34555666666666666666666666666555533 3333333322 111
Q ss_pred ---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 256 ---FPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFE----ISPDV---FTYNILIKGLCGVGQLEGAEGLLQKMYKEGI 325 (605)
Q Consensus 256 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 325 (605)
+.+...|...+..|....+.+-|.++-.-+.... +.|+. .-|..+....++....+.-...++.|.-.-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 1233344445555555555555555544433211 11221 1233444445555555555666666655544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---hH
Q 036303 326 LANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVV---VF 402 (605)
Q Consensus 326 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 402 (605)
.|+..+...++++....+.++-.-+++..+...|...+.... .+++..+....+.|+.. -+
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHHhcCCCCCCChHHHHH
Confidence 555555556666555566666666666555554432222111 11222222222223211 12
Q ss_pred HHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHH
Q 036303 403 TALIDGLSKDGNMKETLRL-YKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQ 481 (605)
Q Consensus 403 ~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 481 (605)
.....-|+. ++.++.+. -.++.+. ..+...++.++-.+.+.|+.++|.+++.-..+........|...+..-++.
T Consensus 494 ~~~~ak~aa--d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 494 QVAFAKCAA--DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHH--HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 222211111 12222221 1223333 455667788888889999999999999998776555444555555566777
Q ss_pred HHHccCCHHHHHHHHHHHHhCC
Q 036303 482 ALCYDGQILKASKLFSDMRSDN 503 (605)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~ 503 (605)
.-.+.+.+..|...++-|...+
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcC
Confidence 7778888999999999887644
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.9e-15 Score=140.47 Aligned_cols=286 Identities=10% Similarity=0.057 Sum_probs=203.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHH
Q 036303 272 AGNLFEAMSLCSEMEKFEISPDVFT-YNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTY--NSLIDGYCKEGDMEKA 348 (605)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a 348 (605)
.|+++.|.+.+....+.. +.+.. +.....+..+.|+++.|...+.++.+.. |+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHH
Confidence 577887777776655432 12222 3233344467788888888888877653 343222 2335667778888888
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-------hHHHHHHHHHhcCCHHHHHHH
Q 036303 349 LSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVV-------VFTALIDGLSKDGNMKETLRL 421 (605)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~ 421 (605)
...++++.+.. +.+......+...|.+.|++++|.+++..+.+....++.. .|..++.......+.+....+
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888887775 3366777777888888888888888888888765432221 222333333344455666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 422 YKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
++.+.+. .+.++.....+...+...|+.++|.+.+++..+. ++++.. .++.+....++++++.+..++..+
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHH--HHHHhhccCCChHHHHHHHHHHHh
Confidence 6665443 2567888889999999999999999999998874 455533 234444566999999999999987
Q ss_pred CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 502 DNLRPDN-CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 502 ~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
..|+. ..+..+...|.+.|++++|.+.|+++++ ..|+...+..++.++.+.|+.++|..++++...+-.+
T Consensus 323 --~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 323 --QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 45554 4677888999999999999999999998 5789888889999999999999999999999876443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.5e-13 Score=118.99 Aligned_cols=330 Identities=12% Similarity=0.050 Sum_probs=193.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHH--
Q 036303 151 EPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFG-- 228 (605)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-- 228 (605)
..|...+-....++.+.|....|++.|...... -+..|.+.+....-..+.+ ....+.. +.+.+.....
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e----~~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIE----ILSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHH----HHHHHHh-cCcccchHHHHH
Confidence 446666566666677788888888888877764 2334444433322222222 2222221 1222221111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHh
Q 036303 229 VLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEI--SPDVFTYNILIKGLCG 306 (605)
Q Consensus 229 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 306 (605)
-+..++....+.+++.+-.......|++.+...-+....+.....++++|+.+|+++.+... -.|..+|+.++ |.+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 23344555556777777777777777766666666666666777788888888888877531 01344555444 222
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 307 VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGL 386 (605)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 386 (605)
..+ ..+.++.+-...--+.-+.|...+.+.|.-.++.++|...|++.++.++. ....|+.+..-|...++...|++-
T Consensus 310 ~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 221 11122222111111223456666677777777777777777777776422 445566666667777777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q 036303 387 YTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDG 466 (605)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (605)
|+.+++.+ +.|...|-.+.++|.-.+...-|+-.|++..+.. |.|...|.+|+.+|.+.++.++|++.|..+..-.
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-- 462 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-- 462 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--
Confidence 77777654 3366677777777777777777777777776654 5566667777777777777777777776666543
Q ss_pred CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 467 GYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 467 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
..+...+..++..|-+.++..+|.+.|++-++
T Consensus 463 ---dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 463 ---DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ---ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 23445566666666666666666666666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-14 Score=127.97 Aligned_cols=220 Identities=13% Similarity=0.088 Sum_probs=138.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 036303 340 CKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETL 419 (605)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 419 (605)
.-.|+.-.|..-|+..+.....++ ..|..+...|....+.++.+..|......+ +.++.+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 345666667777777766643322 225566666777777777777777776654 335556666666666667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036303 420 RLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDM 499 (605)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (605)
.=|++.+..+ +.+...+..+..+..+.++++++...|++..++. +..+..|+.....+..+++++.|.+.|+.+
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-----P~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-----PNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 7777777654 4455566666666667777777777777777663 445666666777777777777777777777
Q ss_pred HhCCCCCC-------HH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 500 RSDNLRPD-------NC--TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 500 ~~~~~~p~-------~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
++ +.|+ .. +-..++..- -.+++..|..++.++++ +.| ....+..|+..-.+.|+.++|+.+|++.
T Consensus 489 i~--LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 489 IE--LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred Hh--hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66 3333 11 111111111 23677777777777776 445 3556677777777777777777777766
Q ss_pred Hhc
Q 036303 570 KES 572 (605)
Q Consensus 570 ~~~ 572 (605)
..+
T Consensus 564 a~l 566 (606)
T KOG0547|consen 564 AQL 566 (606)
T ss_pred HHH
Confidence 554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-14 Score=138.07 Aligned_cols=291 Identities=11% Similarity=0.044 Sum_probs=199.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036303 270 CKAGNLFEAMSLCSEMEKFEISPDV-FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKA 348 (605)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 348 (605)
...|+++.|.+.+....+.. |+. ..+-....+....|+++.|...+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 45788888888887776643 332 333444566677788888888888876653222223334446677778888888
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH----HHHHHHhcCCHHHHHHHHHH
Q 036303 349 LSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTA----LIDGLSKDGNMKETLRLYKE 424 (605)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~ 424 (605)
...++.+.+.. |.+...+..+...+...|++++|.+.+..+.+.+.. +...+.. ........+..+.+...+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888775 336667777888888888888888888888877543 2222211 11111222333333445555
Q ss_pred HHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHH---HHHHHHHHHccCCHHHHHHHHHH
Q 036303 425 MLEAKI---TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVL---YAAIIQALCYDGQILKASKLFSD 498 (605)
Q Consensus 425 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~ 498 (605)
+.+... +.+...+..++..+...|+.++|.+.+++.++.. |+... ...........++.+.+.+.+++
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL------GDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC------CCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 544321 2477888888899999999999999999999864 23221 11122223345788899999999
Q ss_pred HHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 499 MRSDNLRPDN---CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 499 ~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
..+ ..|+. .....+.+.|.+.|++++|.+.|++.......|+..++.+++..+.+.|+.++|.++|++....
T Consensus 325 ~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 325 QAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 887 44544 4566889999999999999999996444446788888889999999999999999999987543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-13 Score=127.00 Aligned_cols=268 Identities=9% Similarity=0.032 Sum_probs=125.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC
Q 036303 299 ILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG 378 (605)
Q Consensus 299 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 378 (605)
...+.+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+. .|..+.+|..+.-.|...|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 33444444455555555555544442 223333333334444444444444444444443 2224445555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 379 NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFL 458 (605)
Q Consensus 379 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 458 (605)
+.++|.+.|.+...... .-...|..+...|+..|.-++|+..+..+.+.- +........++.-|.+.+..+-|.++|.
T Consensus 327 k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred CcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 55555555554443321 122344445555555555555555554444331 1122222233334444555555555555
Q ss_pred HhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 459 EKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD--NLRP----DNCTYTTMLRGLLRAKRMLDVMMLLA 532 (605)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~ 532 (605)
++... .+.|+..++-++......+.+.+|..+|+..+.. .+.+ -..+++.|..+|.+.+++++|+..++
T Consensus 405 ~A~ai-----~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 405 QALAI-----APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHhc-----CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 55443 1334444444444444455555555555554420 0000 11235555555555555555555555
Q ss_pred HHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 533 DMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 533 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
+.+... +.+..++..++-+|...|+.+.|...|.+++.++|.+
T Consensus 480 ~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 480 KALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 555421 1245555555555555555555555555555555554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-17 Score=150.50 Aligned_cols=261 Identities=16% Similarity=0.129 Sum_probs=110.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 036303 299 ILIKGLCGVGQLEGAEGLLQKMYKEG-ILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKA 377 (605)
Q Consensus 299 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (605)
.+...+.+.|++++|+++++...... .+.|...|..+.......++.+.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45677778888888888886554443 2334455556666777788888999999888876533 55566667766 688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 378 GNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAK-ITPSVFTVSSLIHGLFKNGRISNALNF 456 (605)
Q Consensus 378 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 456 (605)
+++++|.+++....+. .+++..+..++..+...++++++..+++.+.... .+.+...+..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999888877655 3566677778888889999999999999877542 345677888888999999999999999
Q ss_pred HHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 457 FLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
++++++.. +.|......++..+...|+.+++.++++...+.. +.|+..+..+..++...|++++|...+++..+
T Consensus 169 ~~~al~~~-----P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 169 YRKALELD-----PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHH------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHcC-----CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999873 4457778889999999999999999988887742 44556788899999999999999999999887
Q ss_pred CCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 537 MGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 537 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
..| |+.+...+++++...|+.++|.++.+++.+
T Consensus 243 --~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 --LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp --HSTT-HHHHHHHHHHHT-----------------
T ss_pred --cccccccccccccccccccccccccccccccccc
Confidence 345 788999999999999999999999888765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-11 Score=114.60 Aligned_cols=507 Identities=13% Similarity=0.144 Sum_probs=326.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKI----EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLI 126 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 126 (605)
-|.+|........++|++..-+..|+.. +...-...|...+......+-++-+..+|++.++. ++..-+-.+
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 4678888999999999999999999876 33334567888888888899999999999999986 444577778
Q ss_pred HHHHccCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCcccHHHHHH
Q 036303 127 DCCCGQGDVMKALNLFDEMIDKG------IEPTVVIYTILIHGLCNENKMV---EAESMFRSMRECGVVPNLYTYNALMD 197 (605)
Q Consensus 127 ~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~ 197 (605)
..+++.+++++|.+.+..++... .+.+-..|..+-....+.-+.- ....+++.+...-..---..|..|..
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 88999999999999999987541 1223445666555555543322 23345555544311111346899999
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC----------------------HHHHHHHHHHHHHCC-
Q 036303 198 GYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGE----------------------LRAAGNFFVHMAKFG- 254 (605)
Q Consensus 198 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~- 254 (605)
.|.+.|.+++|.++|++.+.. ..+..-|..+...|+.-.. ++-...-|+.+....
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 999999999999999998875 3345555555555543211 122222233332211
Q ss_pred ----------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHH
Q 036303 255 ----------VFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPD------VFTYNILIKGLCGVGQLEGAEGLLQ 318 (605)
Q Consensus 255 ----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~ 318 (605)
-+.+...|...+. ...|+..+....+.+..+. +.|. ...|..+...|-..|+.+.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1122223322222 3356777778888877653 2222 2457888889999999999999999
Q ss_pred HHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----------c------CHHHHHHHHHHHHhcC
Q 036303 319 KMYKEGILAN---VVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVE-----------P------NVVTFSSLIDGQCKAG 378 (605)
Q Consensus 319 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~~ 378 (605)
+..+...+-- ..+|..-...-.+..+++.|.++++.+...--. + +...|...+..--..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9887654322 234555556667788899999998887653111 1 2334555566666678
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHH
Q 036303 379 NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSV-FTVSSLIHGLFK---NGRISNAL 454 (605)
Q Consensus 379 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~ 454 (605)
-++....+|++++...+. ++.........+....-++++.++|++-+..-..|+. ..|+..+.-+.+ ...++.|.
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 888888899988876543 3333333333345566678888888877665434443 356665555433 23788899
Q ss_pred HHHHHhhhccCCCCCCccHHHHHHHHHH--HHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 036303 455 NFFLEKTDKTDGGYCSPNHVLYAAIIQA--LCYDGQILKASKLFSDMRSDNLRPDN--CTYTTMLRGLLRAKRMLDVMML 530 (605)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 530 (605)
.+|+++++. ++|...-+-.++.+ --+.|-...|+.+++++... +++.. ..|+..+.-....=-+.....+
T Consensus 571 dLFEqaL~~-----Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 571 DLFEQALDG-----CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred HHHHHHHhc-----CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 999998873 45554332223222 22457778888899887652 44433 2677666644443334566778
Q ss_pred HHHHHHCCCCccHH---HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 531 LADMIKMGIVPDAV---INQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 531 ~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
++++++. -|+.. .....++.=.+.|..+.|+.++...-+.-++
T Consensus 645 YekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 645 YEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred HHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 8888863 44432 3345566677888888888888777766443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-12 Score=116.60 Aligned_cols=380 Identities=9% Similarity=0.067 Sum_probs=271.4
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH--HHH
Q 036303 188 NLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVY--NCL 265 (605)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l 265 (605)
|...+-...-.+.+.|....|++.+...+.. .|..-..|..|.... .+.+.+ ...... .+.+...+ -.+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~----~~l~~~-l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEIL----SILVVG-LPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHH----HHHHhc-CcccchHHHHHHH
Confidence 4444444445566788899999999888764 233333444333332 233222 222221 12222111 224
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcC
Q 036303 266 IDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGIL--ANVVTYNSLIDGYCKEG 343 (605)
Q Consensus 266 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 343 (605)
..++....+.+++..-.......|++.....-+....+.....++++|+.+|+++.+.++- .|..+|..++ |.+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 4566667788899988888888887666666566666677889999999999999987421 3567777766 33333
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036303 344 DMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYK 423 (605)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 423 (605)
+.. +..+..-...--+--+.|...+.+.|.-.++.+.|...|++.++.+ +.....|+.+.+-|....+...|+..++
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 221 1122111111012234566778888899999999999999999885 2245577778888999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 036303 424 EMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDN 503 (605)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 503 (605)
.+++.+ |.|...|..|+.+|.-.+.+.=|+-+|+++..-. +.|...|.+++.+|.+.++.++|++-|+++...|
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-----PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-----PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 999987 7789999999999999999999999999998853 5668999999999999999999999999999854
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 504 LRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKM----G-IVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 504 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
..+...+..|...|.+.++.++|.+.+++.++. | +.| ...+...|+.-+.+.+++++|..+......-++.
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e-- 539 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE-- 539 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch--
Confidence 235678999999999999999999999988752 3 233 3455556888899999999999887777665333
Q ss_pred CCCccchhhhhhcccc
Q 036303 578 ETEGHTTRSFLGHLKP 593 (605)
Q Consensus 578 ~~~~~~~~~~~~~~~~ 593 (605)
-....++++.++.
T Consensus 540 ---~eeak~LlReir~ 552 (559)
T KOG1155|consen 540 ---CEEAKALLREIRK 552 (559)
T ss_pred ---HHHHHHHHHHHHH
Confidence 2344555555443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.2e-13 Score=114.26 Aligned_cols=223 Identities=13% Similarity=0.136 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-------CHHH
Q 036303 345 MEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDG-------NMKE 417 (605)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~ 417 (605)
-+.|++++-.+... - +..-..++..|.+.++..+|..+.+++... ++.-|..-.-.++..| ..+-
T Consensus 270 gEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 270 GEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred CccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 35566655555443 1 122234455566777777777766655322 2222211111222222 2334
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 036303 418 TLRLYKEMLEAKITPS-VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLF 496 (605)
Q Consensus 418 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (605)
|...|+-.-+.+..-| ..--.++..++.-..++++.+.++..+..-. ..|...--.+..++...|++.+|+++|
T Consensus 342 AqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-----~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 342 AQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-----TNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 5555544333222111 1112233444444557888888887766543 333333346788888999999999999
Q ss_pred HHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 497 SDMRSDNLRPDNCTYT-TMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 497 ~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
-++....++ |..+|. .|.++|.+.++++-|+.++ ++..-+.+ -..+..++..|.+++.+--|.+.|+.+..++|
T Consensus 417 ~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 417 IRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 877653333 444554 4556777889998887654 44333333 33455678889999999999999999999999
Q ss_pred CCCCCCccch
Q 036303 575 GSSETEGHTT 584 (605)
Q Consensus 575 ~~~~~~~~~~ 584 (605)
...-|.....
T Consensus 493 ~pEnWeGKRG 502 (557)
T KOG3785|consen 493 TPENWEGKRG 502 (557)
T ss_pred CccccCCccc
Confidence 9888887654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-13 Score=123.23 Aligned_cols=421 Identities=13% Similarity=0.097 Sum_probs=266.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 036303 87 CNALLNGLIKKGKFDSVWEFYEEMVLCGLVAD-VVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPT-VVIYTILIHGL 164 (605)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 164 (605)
+...+.-+.++|++++|++.|...+.. .|+ +..|.....+|...|+|+++.+.-.+.++. .|+ +.++..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 344566788899999999999999986 566 778888999999999999999999998887 444 44677777788
Q ss_pred HhcCCHHHHHHHHHHHHHC-CCCCCcccHHHHHHHHhccCChHHHHHHHHHHHh-CC--CCCCcchHHHHHHHHHhcCCH
Q 036303 165 CNENKMVEAESMFRSMREC-GVVPNLYTYNALMDGYCKVADVNRALEFYHEMLH-HN--LQPNVVTFGVLMDGLCKVGEL 240 (605)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~ 240 (605)
-..|++++|+.-+.-.--. |+. +..+ ..++.-..+ ..|..-.++-.+ .+ .-|+..........+... +
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~-n~s~-~~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~ 265 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQ-NASI-EPMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--P 265 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcc-cchh-HHHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--c
Confidence 8888888876433322211 222 2111 111111111 112222222222 11 223333222222222110 0
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHH----Hh-cCCHHHHHHHHHHHHhCC---C---CCCh------hhHHHHHHH
Q 036303 241 RAAGNFFVHMAKFGVFPNIFVYNCLIDGH----CK-AGNLFEAMSLCSEMEKFE---I---SPDV------FTYNILIKG 303 (605)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~a~~~~~~~~~~~---~---~~~~------~~~~~l~~~ 303 (605)
. .....+.......+...+ .. ...+.+|.+.+.+-.... . ..|. .+......-
T Consensus 266 ~----------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 266 K----------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred c----------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 0 000000001111111111 10 112333333333221100 0 0111 111112222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 036303 304 LCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAA 383 (605)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 383 (605)
+.-.|+.-.|...|+..+.....+ ...|-.+...|+...+.++....|+.+...++. |+.+|..-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 345688899999999999876443 333777778899999999999999999988643 777888888888888999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 036303 384 MGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (605)
..-|++.+... +.+...|..+..+..+.+.++++...|++.++. +|..+.+++.....+..+++++.|.+.|+.++..
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999998763 224455666666666888999999999999885 5777889999999999999999999999998875
Q ss_pred cCC-CCCCccHHHH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 464 TDG-GYCSPNHVLY--AAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 464 ~~~-~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.+. .++-.+...+ ..++. +--.+++..|+.+++++.+ +.|... .|..|...-.+.|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 322 1111122222 12221 2234899999999999998 667655 888999999999999999999998875
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7e-15 Score=138.17 Aligned_cols=288 Identities=14% Similarity=0.129 Sum_probs=231.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 273 GNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGI--LANVVTYNSLIDGYCKEGDMEKALS 350 (605)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 350 (605)
-+..+|...|..+..+. .-...+...+..+|...+++++|+++|+.+.+... .-+...|...+-.+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 35788999999865543 33446777888999999999999999999987631 1355677766643322 22333
Q ss_pred HH-HHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 351 VC-SQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVP-DVVVFTALIDGLSKDGNMKETLRLYKEMLEA 428 (605)
Q Consensus 351 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 428 (605)
.+ +.+.+. -+..+.+|..+..+|.-+++.+.|++.|++.+.. .| ...+|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 33 334444 2457899999999999999999999999999977 34 5677887877788889999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-C
Q 036303 429 KITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-D 507 (605)
Q Consensus 429 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~ 507 (605)
+ +-+..+|..++..|.++++++.|.-.|+++++.. +.+.+....++..+-+.|+.++|+++++++.. +.| |
T Consensus 485 ~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-----P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn 556 (638)
T KOG1126|consen 485 D-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-----PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKN 556 (638)
T ss_pred C-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-----ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCC
Confidence 4 4456678889999999999999999999999864 55677778888889999999999999999997 444 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 508 NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
+..--.-+..+...+++++|+..++++.+ +.| +..++..++.+|.+.|+.+.|+.-|-.+.+++|+...
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 44555667778889999999999999988 566 5888999999999999999999999999999998654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-12 Score=121.23 Aligned_cols=449 Identities=12% Similarity=0.061 Sum_probs=197.4
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHh----
Q 036303 49 KFNPSVFSTLIIAFSEMGHIEEALWVYRKIE-VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLC--GLVADVVT---- 121 (605)
Q Consensus 49 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~---- 121 (605)
..+|.....+++++.-.|.+++|..+...-. ...+.........++.+..++++|..++...... .+.-+..+
T Consensus 46 ~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 46 TNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred cCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 3688888999999999999999999887663 3456667777778888999999998888732100 00000000
Q ss_pred ------H-----H-------HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 122 ------Y-----G-------VLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMREC 183 (605)
Q Consensus 122 ------~-----~-------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (605)
+ + .-...|....++++|...|.+.+.. |...+..+...-.. . .-.+.+.|+.+...
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~-~-mlt~~Ee~~ll~~l 199 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSA-H-MLTAQEEFELLESL 199 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHH-H-hcchhHHHHHHhcc
Confidence 0 0 0001122223344444444444332 22222211111000 0 00011111111111
Q ss_pred CCC----CCcccHHHHHHHHh-ccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036303 184 GVV----PNLYTYNALMDGYC-KVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPN 258 (605)
Q Consensus 184 ~~~----p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 258 (605)
... -+......+..... +..+ +.....-.+..-.+...+......-..-+...+++.+..++.+.+.+.. ++.
T Consensus 200 ~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh 277 (611)
T KOG1173|consen 200 DLAMLTKEDVERLEILYELKLCKNRN-EESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFH 277 (611)
T ss_pred cHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCC
Confidence 000 00000000000000 0000 0000000000000112223333333344444555555555555554432 233
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036303 259 IFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDG 338 (605)
Q Consensus 259 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 338 (605)
...+..-|.++...|+..+-..+=.++.+.- |....+|-.+...|...|+..+|.+.|.+....+.. =...|..+...
T Consensus 278 ~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghs 355 (611)
T KOG1173|consen 278 LPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHS 355 (611)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHH
Confidence 3333334445555555555555544554432 333445555555555555555555555554443211 12345555555
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 036303 339 YCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKET 418 (605)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 418 (605)
++-.+..++|...+..+-+. ++-...-+--+.--|.+.++...|.+.|.+..... +.|+...+.+.-.....+.+.+|
T Consensus 356 fa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 356 FAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred hhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHH
Confidence 55555555555555544443 11011111122233444555555555555555432 33444444444444445555555
Q ss_pred HHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHH
Q 036303 419 LRLYKEMLEA------KITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKA 492 (605)
Q Consensus 419 ~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 492 (605)
..+|+..+.. ..+.-..+++.|+.++.+.+.+++|+..++..+... +.+..++.+++..|...|+++.|
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-----~k~~~~~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-----PKDASTHASIGYIYHLLGNLDKA 508 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-----CCchhHHHHHHHHHHHhcChHHH
Confidence 5555544411 000122345555555555555555555555555442 34445555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHH
Q 036303 493 SKLFSDMRSDNLRPDNCTYTTMLR 516 (605)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~ 516 (605)
++.|.+++. +.|+..+-..++.
T Consensus 509 id~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 509 IDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHh--cCCccHHHHHHHH
Confidence 555555554 4555444444433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-13 Score=131.16 Aligned_cols=289 Identities=11% Similarity=0.069 Sum_probs=180.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHHH
Q 036303 236 KVGELRAAGNFFVHMAKFGVFPN-IFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVF--TYNILIKGLCGVGQLEG 312 (605)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 312 (605)
..|+++.|.+.+....+.. |+ ...+-.......+.|+++.|...+.+..+.. |+.. ........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 4567777777766665542 22 2223334455666677777777777665532 3332 22334556666777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHH-HHHH---HHHhcCCHHHHHHHHH
Q 036303 313 AEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFS-SLID---GQCKAGNIDAAMGLYT 388 (605)
Q Consensus 313 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~~~ 388 (605)
|...++.+.+.. +-+......+...+...|+++.|.+.+..+.+.++. +...+. .-.. .....+..+.+.+.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777777664 335556666777777777777777777777766543 222221 1111 1122222233333444
Q ss_pred HHHHCCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 036303 389 EMVIKSL---VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFT--VSSLIHGLFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 389 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (605)
.+..... +.++..+..+...+...|+.++|..++++..+.. +.+... ...........++.+.+++.++...+.
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 4443311 1366777778888888888888888888888764 222211 111112223456778888888888776
Q ss_pred cCCCCCCccH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 464 TDGGYCSPNH--VLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 464 ~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
. +.|+ ....+++..+.+.|++++|.+.|+++......|++..+..+...+.+.|+.++|.+++++.+.
T Consensus 329 ~-----p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 V-----DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-----CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 3344 566788999999999999999999544333678998888999999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-13 Score=129.50 Aligned_cols=283 Identities=13% Similarity=0.111 Sum_probs=189.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCCHHHH
Q 036303 237 VGELRAAGNFFVHMAKFGVFPNIFV-YNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYN--ILIKGLCGVGQLEGA 313 (605)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A 313 (605)
.|+++.|++.+....+.. +++.. +........+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 577777776666654432 12222 222234446777777777777777663 34433222 234566777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHH-------HHHHHHHHHHhcCCHHHHHHH
Q 036303 314 EGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVV-------TFSSLIDGQCKAGNIDAAMGL 386 (605)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~ 386 (605)
...++++.+.. +-+......+...|.+.|++++|..++..+.+.+..++.. .|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777777765 3356667777777777778888887777777765432211 222223333334445555556
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q 036303 387 YTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDG 466 (605)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (605)
++.+... .+.++.....+...+...|+.++|..++++..+. +++..... +.+....++.+++++..++..+..
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~-- 324 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQH-- 324 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhC--
Confidence 6555433 2446777778888888889999999888888873 45554332 223335588888888888888764
Q ss_pred CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 467 GYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 467 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+.|+..+..++..+.+.|++++|.+.|+++.+ ..|+...+..+..++.+.|+.++|..++++.+.
T Consensus 325 ---P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 ---GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566677888889999999999999999887 678888888888899999999999998888765
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=143.65 Aligned_cols=260 Identities=18% Similarity=0.171 Sum_probs=87.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036303 264 CLIDGHCKAGNLFEAMSLCSEMEKFE-ISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKE 342 (605)
Q Consensus 264 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 342 (605)
.+...+.+.|++++|+++++...... .+.+...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34556666677777777775433322 1233444444555555666777777777777665422 44455555555 566
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 036303 343 GDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKS-LVPDVVVFTALIDGLSKDGNMKETLRL 421 (605)
Q Consensus 343 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 421 (605)
+++++|.+++....+. .+++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777776665544 2345556666666777777777777777665432 234555666666777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 422 YKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+++.++.. |.+..+...++..+...|+.+++.+++....... +.|+..+..+..++...|++++|..++++..+
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 77777654 4456667777777777777777666666665542 33445566677777777777777777777766
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 502 DNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 502 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
..| |+.....+++++...|+.++|.++..++.
T Consensus 243 --~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 243 --LNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp --HSTT-HHHHHHHHHHHT----------------
T ss_pred --ccccccccccccccccccccccccccccccccc
Confidence 334 55566677777777777777777766554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-13 Score=113.95 Aligned_cols=221 Identities=11% Similarity=0.109 Sum_probs=133.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCH
Q 036303 97 KGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTV------VIYTILIHGLCNENKM 170 (605)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 170 (605)
.++.++|.++|-+|.+..+ ....+..+|.+.|.+.|.+++|+.+.+.+.++ ||. .+...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 4577888888888877532 24556677778888888888888888887765 232 2445566667777888
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCc----chHHHHHHHHHhcCCHHHHHHH
Q 036303 171 VEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNV----VTFGVLMDGLCKVGELRAAGNF 246 (605)
Q Consensus 171 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 246 (605)
+.|.++|..+.+.+.- -..+...|+..|-...+|++|++.-+++.+.+..+.. ..|..+...+....+.+.|...
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 8888888877765322 3445666777777777888888777777765433221 2233344444445556666666
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 247 FVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKE 323 (605)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 323 (605)
+.+..+.+ +..+..--.+.+.+...|+++.|++.++.+.+.+..--+.+...+..+|...|+.++...++..+.+.
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 66655543 22222333344555556666666666666655442222334455555555556665555555555554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.5e-14 Score=130.73 Aligned_cols=284 Identities=12% Similarity=0.096 Sum_probs=223.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHH
Q 036303 239 ELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEI--SPDVFTYNILIKGLCGVGQLEGAEGL 316 (605)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 316 (605)
+..+|...|..+... +..+..+...+..+|...+++++|.++|+.+.+... .-+...|.+.+..+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 467888888885443 344457777889999999999999999999987431 1245567666654322 223333
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 317 L-QKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSL 395 (605)
Q Consensus 317 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 395 (605)
+ +.+.... +..+.+|.++..+|.-+++.+.|++.|+++++.+. -...+|+.+..=+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 3 3344443 55788999999999999999999999999998742 2678888888888888999999999999886521
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHH
Q 036303 396 VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVL 475 (605)
Q Consensus 396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 475 (605)
-+-..|..+...|.+.++++.|.-.|+++++.+ |.+......++..+.+.|+.++|+.+++++.... +.|+..
T Consensus 487 -rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----~kn~l~ 559 (638)
T KOG1126|consen 487 -RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----PKNPLC 559 (638)
T ss_pred -hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----CCCchh
Confidence 133345557778999999999999999999877 6677788888999999999999999999998864 455555
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMG 538 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 538 (605)
--..+..+...+++++|...++++.+ +.|+.. .|..++..|.+.|+.+.|+..|.-|.+..
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 55667778889999999999999998 677655 78888899999999999999999888743
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-12 Score=113.74 Aligned_cols=286 Identities=13% Similarity=0.129 Sum_probs=186.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 036303 202 VADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSL 281 (605)
Q Consensus 202 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 281 (605)
.|+|.+|.+...+-.+.+.. ....|..-+.+.-..|+.+.+-.++.++.+....++....-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57777777777776665422 23344445556667778888888887777753345566666677777778888888888
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 282 CSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANV-------VTYNSLIDGYCKEGDMEKALSVCSQ 354 (605)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 354 (605)
++++.+.+ +.+.........+|.+.|++.....++..+.+.+.-.|. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 87777765 445666777778888888888888888888877655443 2455555555555555555556655
Q ss_pred HhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 036303 355 MTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSV 434 (605)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (605)
.... ...++..-..++.-+...|+.++|.++.++..+++..|. .. ..-.+.+.++...-++..++-.+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5443 333555566667777777777777777777777755444 11 1223455666666666666665543 4455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 435 FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
..+..|+..|.+.+.|.+|...|+..++. .|+..+|+.+.+++.+.|++.+|.++.++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL------RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66677777777777777777777766663 56667777777777777777777777766654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-12 Score=120.61 Aligned_cols=460 Identities=14% Similarity=0.071 Sum_probs=265.5
Q ss_pred HhcCChhHHHHH----HHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 95 IKKGKFDSVWEF----YEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKM 170 (605)
Q Consensus 95 ~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (605)
+-..+.+++.-. +.++....+..+..+|..+.-+....|+++.+.+.|++....- -.....|+.+...|...|.-
T Consensus 295 i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~ 373 (799)
T KOG4162|consen 295 IPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSD 373 (799)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccc
Confidence 344455555432 2333333445577777777777777888888888887776542 22456777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHH-HH-hccCChHHHHHHHHHHHhC--CC--CCCcchHHHHHHHHHhc-------
Q 036303 171 VEAESMFRSMRECGVVPNLYTYNALMD-GY-CKVADVNRALEFYHEMLHH--NL--QPNVVTFGVLMDGLCKV------- 237 (605)
Q Consensus 171 ~~a~~~~~~~~~~~~~p~~~~~~~l~~-~~-~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~------- 237 (605)
..|..+++.-......|+..+--.++. .| -+.+.+++++++..+.++. +. ...+..+..+.-+|...
T Consensus 374 s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~ 453 (799)
T KOG4162|consen 374 SKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLK 453 (799)
T ss_pred hHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCCh
Confidence 777777777655433343333322322 22 2456677777666666552 11 12233344444443311
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 036303 238 ----GELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGA 313 (605)
Q Consensus 238 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 313 (605)
....++.+.+++..+.+. .|+.+...+.--|...++...|.+..++..+.+...+...|..+.-.+...+++.+|
T Consensus 454 seR~~~h~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 454 SERDALHKKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 113455566666655432 222333334445666777777777777777765556677777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 314 EGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK 393 (605)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 393 (605)
+.+.+.....- ..|......-+..-...++.+++......+... +. +..... ..++-....+....+.-.
T Consensus 533 l~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~-we-~~~~~q-------~~~~~g~~~~lk~~l~la 602 (799)
T KOG4162|consen 533 LDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLAL-WE-AEYGVQ-------QTLDEGKLLRLKAGLHLA 602 (799)
T ss_pred HHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH-HH-hhhhHh-------hhhhhhhhhhhhcccccC
Confidence 77777665541 112211112222223355666665555544432 00 000000 001101111111111100
Q ss_pred --CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 036303 394 --SLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKIT--PS------VFTVSSLIHGLFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 394 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (605)
...-...++..+.......+ +.+..-.. +....+. |+ ...|......+.+.+..++|...+.++...
T Consensus 603 ~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~ 679 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI 679 (799)
T ss_pred cccccccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 00111122222222111111 11100000 1111111 22 123445566778888999999888888775
Q ss_pred cCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCC
Q 036303 464 TDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMM--LLADMIKMGIV 540 (605)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~ 540 (605)
. +.....|...+..+...|...+|.+.|..+.. +.|+.+ +...+...+.+.|+..-|.. ++..+++ +.
T Consensus 680 ~-----~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~d 750 (799)
T KOG4162|consen 680 D-----PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LD 750 (799)
T ss_pred c-----hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hC
Confidence 3 55677788888888999999999999999987 778755 88899999999998777777 8999998 45
Q ss_pred c-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 541 P-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 541 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
| +.+.|..++.++.+.|+.++|..+|..+.++.+.++.
T Consensus 751 p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 751 PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 6 6999999999999999999999999999999877543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.3e-11 Score=103.10 Aligned_cols=423 Identities=15% Similarity=0.115 Sum_probs=192.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 036303 56 STLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQG 133 (605)
Q Consensus 56 ~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (605)
..++..+...|++++|+..|+.+ ...++.+.+-.+.-+..-.|.+.+|..+-+...+ ++-.-..+.....+.+
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhC
Confidence 34455555555555555555544 2223344444444444445555555444433321 2222333334444445
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH-HHHHHhccCChHHHHHHH
Q 036303 134 DVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNA-LMDGYCKVADVNRALEFY 212 (605)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~ 212 (605)
+-++-..+.+.+.. +..---+|.......-.+.+|++++...+..+ |+-...|. +.-+|.+..-++-+.+++
T Consensus 136 dEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 136 DEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred cHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 54444444444322 11222233333333344555555555554431 22223332 333444555555555555
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHh
Q 036303 213 HEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKA-----GNLFEAMSLCSEMEK 287 (605)
Q Consensus 213 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~ 287 (605)
+-.++. ++.++...+..+....+.=.-..|++-.+.+...+- .. | ..+.-.++. .+-+.|++++-.+.+
T Consensus 209 ~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~-~~---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~ 282 (557)
T KOG3785|consen 209 KVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID-QE---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMK 282 (557)
T ss_pred HHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc-cc---c-hhHHHHHHcCeEEEeCCccHHHhchHHHh
Confidence 544443 111222222222222221111122222222222110 00 0 011111111 223445555444433
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHhhCCC
Q 036303 288 FEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEG-------DMEKALSVCSQMTEKGV 360 (605)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~ 360 (605)
. -|.. -..++-.|.+++++.+|..+.+.+.-. ++.-|-.-.-.++..| ...-|.+.|+..-+.+.
T Consensus 283 ~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 283 H--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred h--ChHh--hhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 1 1222 223444566777777777766554321 2222222122222222 23445555555444432
Q ss_pred CcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036303 361 EPNV-VTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSS 439 (605)
Q Consensus 361 ~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (605)
.-|. .--..+...+.-..++++.+.++..+..--...|...+ .+.++++..|++.+|.++|-.+....++.+..-...
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~ 433 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSM 433 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHH
Confidence 2221 12233445555556677777776666554323233333 466777777777777777776665444444444556
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHH-HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVL-YAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTM 514 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 514 (605)
|..+|.++++++-|++++-+.-. +.+..+ +..+..-|.+.+.+=-|-+.|+.+.. ..|++..|..-
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~t-------~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGK 500 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTNT-------PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGK 500 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcCC-------chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCc
Confidence 66777777777777777655432 222222 33445566677777666677776665 56776666433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-12 Score=110.40 Aligned_cols=286 Identities=19% Similarity=0.171 Sum_probs=176.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc------cHHHHHHHHhccCCh
Q 036303 132 QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLY------TYNALMDGYCKVADV 205 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~~~~ 205 (605)
..+.++|.+.|-+|.+.. +.+..+.-+|.+.|.+.|..+.|+.+.+.+.++ ||.. ....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 567788888888887753 224556667777888888888888888877764 3321 223455666777777
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHH
Q 036303 206 NRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNI----FVYNCLIDGHCKAGNLFEAMSL 281 (605)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 281 (605)
+.|.++|..+.+.+ ..-......|+..|-...+|++|.+.-+++.+.+..+.. ..|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 77777777776643 334456667777777777777777777777665433322 2344455555556677777777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 036303 282 CSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVE 361 (605)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 361 (605)
+.+..+.+ +..+..-..+.......|+++.|.+.++.+.+.+...-..+...|..+|...|+.++....+..+.+..
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 77766643 223333344556666777777777777777776544444556666777777777777777777766652
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 036303 362 PNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSK---DGNMKETLRLYKEMLE 427 (605)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 427 (605)
+.......+...-....-.+.|...+.+-+.+ +|+...+..++..... .|...+...++.+|..
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 23333344444444444555555555555544 5677777766665432 3345555555555553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-11 Score=109.45 Aligned_cols=287 Identities=13% Similarity=0.068 Sum_probs=209.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 272 AGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSV 351 (605)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 351 (605)
.|+|.+|++...+-.+++-. ....|..-+.+--+.|+.+.+-.++.++.+....++....-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 67788888877777666532 23345555566667788888888887777653344555566666677777888888887
Q ss_pred HHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 352 CSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDV-------VVFTALIDGLSKDGNMKETLRLYKE 424 (605)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~ 424 (605)
..++.+.+. -++.......++|.+.|++.....++..+.+.+.-.++ .++..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 777777653 35667777778888888888888888888877655444 3556666665565666665666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 036303 425 MLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNL 504 (605)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (605)
.... ...++....+++.-+..+|+.++|.++.++.+++.. .|+ . .....+.+-++...-++..++..+. .
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~----D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~-h 324 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW----DPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQ-H 324 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc----Chh---H-HHHHhhcCCCCchHHHHHHHHHHHh-C
Confidence 6543 356677778888889999999999999999988752 333 1 2233455677888888888777763 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 505 RPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
+-++..+..|...|.+.+.|.+|.+.|+.+++ ..|+...|..+++++.+.|+..+|....+...-.
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 33456888999999999999999999998887 6689999999999999999999999999988754
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-09 Score=100.55 Aligned_cols=293 Identities=10% Similarity=0.062 Sum_probs=145.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------
Q 036303 261 VYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPD---VFTYNILIKGLCGVGQLEGAEGLLQKMYKEGIL----------- 326 (605)
Q Consensus 261 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------- 326 (605)
.|..+...|-..|+.+.|..+|++..+...+.- ..+|..-...-.++.+++.|+.+++......-.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 445555556666666666666666554322111 123333334444455555565555554322100
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 036303 327 ------ANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVV 400 (605)
Q Consensus 327 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 400 (605)
.+...|...+..--..|-++....+|+++++..+. ++.........+-...-++++.++|++-+..-..|+..
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 02223444455555566677777777777766543 22222223333444556677777776655553344432
Q ss_pred -hHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHH
Q 036303 401 -VFTALIDGLSK---DGNMKETLRLYKEMLEAKITPSVFTVSSL--IHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHV 474 (605)
Q Consensus 401 -~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 474 (605)
.|+..+.-+.+ ....+.|..+|++.++ +.+|...-...| ...--+.|-...|+.+|+++...-. ......
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~---~a~~l~ 623 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK---EAQRLD 623 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC---HHHHHH
Confidence 34443333221 2356777777777777 334332222111 2222345666777777777655421 011133
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCc--cHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYT---TMLRGLLRAKRMLDVMMLLADMIKMGIVP--DAVINQVM 549 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 549 (605)
.|+..|.--...=-+.....+|+++++ .-|+...-. ...+.-.+.|..+.|..++...-+. .+| +...|...
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~tw 700 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTW 700 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHH
Confidence 455444322222123344566666666 345544322 2222334567777777776655542 233 46666666
Q ss_pred HHHHHhcCChhH
Q 036303 550 VRGYQENGDLKS 561 (605)
Q Consensus 550 ~~~~~~~g~~~~ 561 (605)
-..=.+.|+-+.
T Consensus 701 k~FEvrHGnedT 712 (835)
T KOG2047|consen 701 KEFEVRHGNEDT 712 (835)
T ss_pred HHHHHhcCCHHH
Confidence 666667776443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-10 Score=103.67 Aligned_cols=274 Identities=11% Similarity=-0.001 Sum_probs=149.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 036303 292 PDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILAN-VVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSL 370 (605)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 370 (605)
.+......+...+...|+.++|+..|++....+ |+ ........-.+.+.|+.+....+...+.... ......|..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 344444455555555555555555555544432 11 1111222222344555555555554444331 1122233333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 371 IDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRI 450 (605)
Q Consensus 371 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (605)
+......+++..|+.+-++.+... +.+...+..-...+...|+.++|.-.|+...... |-+...|..|+.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 334444555566655555555442 1123333333344555566666666666555443 34555666666666666666
Q ss_pred HHHHHHHHHhhhccCCCCCCccHHHHHHHH-HHHHc-cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 036303 451 SNALNFFLEKTDKTDGGYCSPNHVLYAAII-QALCY-DGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDV 527 (605)
Q Consensus 451 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A 527 (605)
.+|.-+-....+.. +.+..++..++ ..+.. ..--++|.+++++.+. +.|+.. ....+...|...|+++++
T Consensus 385 kEA~~~An~~~~~~-----~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 385 KEANALANWTIRLF-----QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HHHHHHHHHHHHHh-----hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchH
Confidence 66665555555442 33344443332 22222 2234677777777776 666654 555666677777778888
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 528 MMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
+.++++.+. ..||......|++.+...+.+++|...|..++.++|++..+
T Consensus 458 i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 458 IKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 888777775 56777777778888888888888888888888877776543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.9e-10 Score=105.65 Aligned_cols=241 Identities=14% Similarity=0.077 Sum_probs=123.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG 131 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (605)
.|...+..| ..+.+...+++.+.+ ..+.-.++....+-.+...|+.++|....+......+. +...|.++.-.+..
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 333344333 335555555555554 12222233333334444556666666666655554322 45566666666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHH
Q 036303 132 QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEF 211 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 211 (605)
..++++|++.|...+..+ +.+...+..+.-.-++.++++.....-..+.+..+. ....|..++.++.-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666766666666654 225556666665666666666666666655554222 344566666666666666666666
Q ss_pred HHHHHhCC-CCCCcchHHHHHHHH------HhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHH
Q 036303 212 YHEMLHHN-LQPNVVTFGVLMDGL------CKVGELRAAGNFFVHMAKFGVFPNIF-VYNCLIDGHCKAGNLFEAMSLCS 283 (605)
Q Consensus 212 ~~~~~~~~-~~~~~~~~~~l~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 283 (605)
++...+.. ..|+...+....... ...|.++.|.+.+...... ..|.. .-..-...+.+.++.++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 66665542 234444444333222 2344445554444433321 11111 12223444556666666666666
Q ss_pred HHHhCCCCCChhhHHHHHH
Q 036303 284 EMEKFEISPDVFTYNILIK 302 (605)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~ 302 (605)
.+...+ ||...|...+.
T Consensus 244 ~Ll~rn--Pdn~~Yy~~l~ 260 (700)
T KOG1156|consen 244 RLLERN--PDNLDYYEGLE 260 (700)
T ss_pred HHHhhC--chhHHHHHHHH
Confidence 665532 55444444333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-10 Score=112.65 Aligned_cols=297 Identities=20% Similarity=0.174 Sum_probs=196.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG 131 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (605)
+.......+...|++++|++.+++.. ...........+..+.+.|++++|..+|..+++.++. +...|..+..+..-
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhh
Confidence 34445566788999999999998762 3334455667778899999999999999999998643 55556666655522
Q ss_pred c-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCh
Q 036303 132 Q-----GDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMV-EAESMFRSMRECGVVPNLYTYNALMDGYCKVADV 205 (605)
Q Consensus 132 ~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 205 (605)
. .+.+....+++.+...- |.......+.-.+..-..+. .+...+..+...|+++ +|..+-..|......
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 2 35677888888887762 34333333332333222333 3456667777777653 566666666655555
Q ss_pred HHHHHHHHHHHhC----C----------CCCCc--chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 036303 206 NRALEFYHEMLHH----N----------LQPNV--VTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGH 269 (605)
Q Consensus 206 ~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (605)
.-..+++...... + -+|+. .++..+...|...|++++|..+++..++.. |..+..|..-...+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Karil 238 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 5555555554432 1 12222 244566777888888888988888888764 33466777788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHh
Q 036303 270 CKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVT--------YNSLIDGYCK 341 (605)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~ 341 (605)
-..|++.+|.+.++.....+ ..|-..=+..+..+.+.|++++|..++....+.+..|.... ......+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 88899999888888888765 34555556667777888888888888888877653222111 1334567778
Q ss_pred cCCHHHHHHHHHHHhhC
Q 036303 342 EGDMEKALSVCSQMTEK 358 (605)
Q Consensus 342 ~~~~~~a~~~~~~~~~~ 358 (605)
.|++..|++.|..+.+.
T Consensus 318 ~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 88888887777666543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-09 Score=103.54 Aligned_cols=435 Identities=15% Similarity=0.112 Sum_probs=231.2
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 036303 122 YGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCK 201 (605)
Q Consensus 122 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 201 (605)
|..++.+| ..+++.+.++..+.+++. .+....+.....-.+...|+-++|....+.-...++. +.+.|..+.-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 34444443 556666666666666663 2333444444444555667777777766666665444 66667776666666
Q ss_pred cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 036303 202 VADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSL 281 (605)
Q Consensus 202 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 281 (605)
..++++|++.|...+..+ +.|...+..+.-.-+..++++..........+.. +.....|..++.++.-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777766653 3455566666655666666666666655555532 23344555566666667777777777
Q ss_pred HHHHHhCC-CCCChhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHH
Q 036303 282 CSEMEKFE-ISPDVFTYNILI------KGLCGVGQLEGAEGLLQKMYKEGILANVVT-YNSLIDGYCKEGDMEKALSVCS 353 (605)
Q Consensus 282 ~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~ 353 (605)
+++..+.. ..|+...+.... ......|.++.|.+.+...... ..|... -..-...+.+.++.++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 77665543 234444433222 2234456666666655544332 112222 2233445667777777777777
Q ss_pred HHhhCCCCcCHHHHH-HHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCC
Q 036303 354 QMTEKGVEPNVVTFS-SLIDGQCKAGNIDAAM-GLYTEMVIKSLVPDVVVFTALIDGLSKDGN-MKETLRLYKEMLEAKI 430 (605)
Q Consensus 354 ~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~ 430 (605)
.++.. .||..-|. .+..++.+-.+.-++. .+|....+. .|.......+--......+ .+..-.++..+++.|+
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 77776 34444433 3333443333333333 555554443 2222111111111111122 2333445555566665
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC----------CCCccHHHHH--HHHHHHHccCCHHHHHHHHHH
Q 036303 431 TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG----------YCSPNHVLYA--AIIQALCYDGQILKASKLFSD 498 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~ 498 (605)
++-...+..+ |-.-...+--.++.........+. .-+|....|. .++..+-..|+++.|..+++.
T Consensus 320 p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred CchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4432222222 111111110011111111111000 0145544443 455566677888888888887
Q ss_pred HHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 499 MRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 499 ~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
+.. ..|+.. .|..-.+.+.++|++++|..+++...+.. .+|..+-..-+.-..+.++.++|..+.-+.-+-+
T Consensus 397 AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 397 AID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred Hhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 775 456544 55566677777888888888887777644 3455555566777777888888877766665544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-12 Score=111.43 Aligned_cols=239 Identities=14% Similarity=0.058 Sum_probs=200.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 036303 332 YNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSK 411 (605)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (605)
-+.+..+|.+.|-+.+|.+.++..++. .|-+.+|..|..+|.+..++..|+.++.+.+.. ++.++.....+.+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 367888999999999999999988876 567788888999999999999999999988876 24455555667788888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHH
Q 036303 412 DGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILK 491 (605)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 491 (605)
.++.++|.++|+...+.. +.+.+...++...|.-.++++-|+++|.+++... ..++..|+.+.-+|...++++-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-----~~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-----AQSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-----CCChHHHhhHHHHHHhhcchhh
Confidence 999999999999999876 6778888888888889999999999999999864 5677889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 492 ASKLFSDMRSDNLRPDN--CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 492 A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
++.-|++++..--.|+. .+|-.+.......||+.-|.+.|.-++... ..+.+.++.|+-.-.+.|+.++|+.++..+
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 99999999875444543 478888888888999999999999887643 235889999999999999999999999999
Q ss_pred HhcCCCCCCCC
Q 036303 570 KESRIGSSETE 580 (605)
Q Consensus 570 ~~~~~~~~~~~ 580 (605)
....|.-.+..
T Consensus 456 ~s~~P~m~E~~ 466 (478)
T KOG1129|consen 456 KSVMPDMAEVT 466 (478)
T ss_pred hhhCccccccc
Confidence 99888765543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.4e-12 Score=112.00 Aligned_cols=204 Identities=13% Similarity=0.060 Sum_probs=155.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
....+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..++.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34556667777777888888888888777653 3345666777777888888888888888887765 445667777788
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRA 521 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 521 (605)
.+...|++++|.+.+++.+.... .+.....+..+..++...|++++|.+.++++.+. .|+ ...+..+...+...
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPL---YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccc---cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHc
Confidence 88888888888888888876321 1233455667788888999999999999998873 343 55777888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 522 KRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 522 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
|++++|...++++++. .+.+...+..++..+...|+.++|..+++.+.+..|
T Consensus 183 ~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 183 GQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999998875 234677777888899999999999999888876543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-09 Score=95.30 Aligned_cols=307 Identities=13% Similarity=0.047 Sum_probs=216.3
Q ss_pred CCCCcchHHHHHHHHH--hcCCHHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-h
Q 036303 220 LQPNVVTFGVLMDGLC--KVGELRAAGNFFVHMAK-FGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDV-F 295 (605)
Q Consensus 220 ~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 295 (605)
.+|...+....+.+++ -.++...+...+-.+.. .-++.|......+..++...|+..+|+..|++....+ |+. .
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhh
Confidence 3444444444444433 34444444444444433 2356677788888899999999999999999887643 332 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 036303 296 TYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQC 375 (605)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (605)
......-.+.+.|+++....+...+.... .-....|-.-+......++++.|+.+-++.+..+. .+...+..-...+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHH
Confidence 23333334566788888887777776542 12333444445555667788899998888887643 35566666677888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHH
Q 036303 376 KAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLI-HGLF-KNGRISNA 453 (605)
Q Consensus 376 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A 453 (605)
..|+.++|.-.|+...... +-+...|..|+.+|...|++.+|..+-....+. ++.+..++..++ ..+. ...--++|
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHH
Confidence 8999999999999888663 347789999999999999999998887776654 255666666653 3332 23345778
Q ss_pred HHHHHHhhhccCCCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 454 LNFFLEKTDKTDGGYCSPN-HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLA 532 (605)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 532 (605)
.+++++.+.. .|+ ..+.+.+...+...|..+.++.++++.+. ..||....+.|.+.+...+.+++|+..|.
T Consensus 424 Kkf~ek~L~~------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 424 KKFAEKSLKI------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHHhhhcc------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999988874 455 44556777788889999999999999887 67898888999999999999999999999
Q ss_pred HHHHCCCCcc
Q 036303 533 DMIKMGIVPD 542 (605)
Q Consensus 533 ~~~~~~~~~~ 542 (605)
.+++ +.|.
T Consensus 496 ~ALr--~dP~ 503 (564)
T KOG1174|consen 496 KALR--QDPK 503 (564)
T ss_pred HHHh--cCcc
Confidence 8887 5664
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-09 Score=105.39 Aligned_cols=296 Identities=14% Similarity=0.120 Sum_probs=206.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 036303 89 ALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNE- 167 (605)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 167 (605)
-....+...|++++|++.++.-... +......+......+.+.|+.++|..++..++..++ .+..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhc
Confidence 3445667899999999999886654 443556777888999999999999999999999853 3555556666655322
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChH-HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH
Q 036303 168 ----NKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVN-RALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRA 242 (605)
Q Consensus 168 ----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (605)
.+.+...++++++...- |...+...+.-.+.....+. .+..++..++..|+| .+|..+-..|.......-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 35677788888887753 44444444443444333444 344566677777755 356666666665555555
Q ss_pred HHHHHHHHHHC----C----------CCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 036303 243 AGNFFVHMAKF----G----------VFPNI--FVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCG 306 (605)
Q Consensus 243 a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (605)
..+++...... + -+|+. .++..+...|...|++++|++.+++...+. |..+..|..-...+-.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 55555554321 1 12343 344566778888999999999999988864 3336677888888899
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHH--------HHHHHHHHHHhcC
Q 036303 307 VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVV--------TFSSLIDGQCKAG 378 (605)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~ 378 (605)
.|++.+|...++.....+. .|...-+..+..+.+.|+.++|.+++......+..|-.. .......+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888753 366677777888889999999999998887776433221 1234567888889
Q ss_pred CHHHHHHHHHHHHHC
Q 036303 379 NIDAAMGLYTEMVIK 393 (605)
Q Consensus 379 ~~~~a~~~~~~~~~~ 393 (605)
++..|++.|..+.+.
T Consensus 320 ~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 320 DYGLALKRFHAVLKH 334 (517)
T ss_pred hHHHHHHHHHHHHHH
Confidence 888888887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-09 Score=105.55 Aligned_cols=236 Identities=14% Similarity=0.058 Sum_probs=159.1
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHhHHH
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVA-DVVTYGV 124 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ 124 (605)
...++.+|-.+.-+....|+++.+.+.|++.. .....+.|+.+...+...|.-..|..+++........| +...+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 44688889999999999999999999999873 34556789999999999999999999998877665334 3444444
Q ss_pred HHHHHH-ccCChhHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCC
Q 036303 125 LIDCCC-GQGDVMKALNLFDEMIDK--GI--EPTVVIYTILIHGLCNE-----------NKMVEAESMFRSMRECGVVPN 188 (605)
Q Consensus 125 l~~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~p~ 188 (605)
.-..|. +.+.+++++.+..+++.. +. ......+..+.-+|... ....++++.+++..+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 444444 457788888888777762 11 12344555555555431 1245677788888776544 4
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 036303 189 LYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDG 268 (605)
Q Consensus 189 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 268 (605)
+.....+.--|+..++++.|.+..++.++.+-.-+...+..++..+...+++.+|+.+.+.....- +.|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 444445556677788899999999988887556677888888888888889999998888776531 1122222222223
Q ss_pred HHhcCCHHHHHHHHHHH
Q 036303 269 HCKAGNLFEAMSLCSEM 285 (605)
Q Consensus 269 ~~~~~~~~~a~~~~~~~ 285 (605)
-...++.++++.....+
T Consensus 557 ~~~~~~~e~~l~t~~~~ 573 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHK 573 (799)
T ss_pred hhhcccHHHHHHHHHHH
Confidence 33356666666555544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-11 Score=100.12 Aligned_cols=206 Identities=15% Similarity=0.041 Sum_probs=177.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLF 445 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (605)
+...|.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|++.+... +.+..++|..+..++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45567778999999999999999999884 3356688888899999999999999999999886 678889999999999
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH
Q 036303 446 KNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRM 524 (605)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 524 (605)
.+|++++|...|++++.... ......+|..++.|..+.|+++.|...|++.++ +.|+ +.+...+.......|++
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~---Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 115 AQGRPEEAMQQFERALADPA---YGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred hCCChHHHHHHHHHHHhCCC---CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccc
Confidence 99999999999999987532 233456788999999999999999999999998 5555 44788899999999999
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 525 LDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 525 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
-.|..++++....+ .++...+-..+++-...||.+.|.++=..+...-|...+-
T Consensus 190 ~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 190 APARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred hHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999888655 4889999989999999999999999988888888876543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-09 Score=98.35 Aligned_cols=453 Identities=14% Similarity=0.059 Sum_probs=261.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcc
Q 036303 55 FSTLIIAFSEMGHIEEALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQ 132 (605)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (605)
...=++.+...|++++|++...++. .+.+..++..-+.++++.+.|++|+.+.+.-... ..+...+..-..+..+.
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc
Confidence 4444566778899999999988873 4566777888888889999999998655543221 11111112223445578
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhc-cCChHHHHHH
Q 036303 133 GDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCK-VADVNRALEF 211 (605)
Q Consensus 133 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~ 211 (605)
+..++|+..++-... .+..+...-...+.+.|++++|.++|+.+.+.+.+ .+...+++-+. .+--..+ ++
T Consensus 93 nk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~~-~~ 163 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQV-QL 163 (652)
T ss_pred ccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhhH-HH
Confidence 899999998883322 24446666777888999999999999999876432 33333322111 1111111 11
Q ss_pred HHHHHhCCCCCCcchHHH---HHHHHHhcCCHHHHHHHHHHHHHCCC------CCC-H-------hhHHHHHHHHHhcCC
Q 036303 212 YHEMLHHNLQPNVVTFGV---LMDGLCKVGELRAAGNFFVHMAKFGV------FPN-I-------FVYNCLIDGHCKAGN 274 (605)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~-~-------~~~~~l~~~~~~~~~ 274 (605)
.+ .....| ..+|.. ....+...|++.+|+++++...+.+. ..+ . .....+..++...|+
T Consensus 164 ~q---~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 164 LQ---SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HH---hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 22 211222 234443 44456678999999999988832110 001 1 123345667788999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHH---HHHhcCCH-H-HHHHHHHHHHHCC-----------CCCCHHHHHHHHHH
Q 036303 275 LFEAMSLCSEMEKFEISPDVFTYNILIK---GLCGVGQL-E-GAEGLLQKMYKEG-----------ILANVVTYNSLIDG 338 (605)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~-~-~A~~~~~~~~~~~-----------~~~~~~~~~~l~~~ 338 (605)
-++|..++..+.+.. ++|........+ +.....++ + .++..++...... ..-....-+.++..
T Consensus 240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876 355432222111 11111111 1 1222222211110 00011111223333
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHH-HH-hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 036303 339 YCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDG-QC-KAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMK 416 (605)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 416 (605)
| .+..+.+.++....... .|.. .+..++.. .. +......+.+++.........-.......+++.....|+++
T Consensus 319 ~--tnk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 319 F--TNKMDQVRELSASLPGM--SPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred H--hhhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 3 33344555544443332 2333 33333332 22 22357778888887776633323455666777888999999
Q ss_pred HHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC--CCccHHHHHHHHHHHHcc
Q 036303 417 ETLRLYK--------EMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGY--CSPNHVLYAAIIQALCYD 486 (605)
Q Consensus 417 ~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 486 (605)
.|.+++. .+.+.+ ..+.+...+...+.+.++-+.|..++.+++....... -..-...+.-+...-.+.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999999 444443 3445566667777787777777777777766432111 111122333444455578
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 487 GQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLA 532 (605)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 532 (605)
|+-++|..+++++.+.+ ++|..+...++.+|++. +++.|..+-.
T Consensus 472 G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred CchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 99999999999999842 46777888999998765 6777776544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.8e-09 Score=97.48 Aligned_cols=452 Identities=13% Similarity=0.044 Sum_probs=260.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036303 87 CNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCN 166 (605)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (605)
...=+..+...|++++|.....+++..+ +.+...+..-+-++++.+.+++|+.+.+.-... ..+...+-.-+.+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence 3344566677899999999999999876 446778888888999999999999665543221 1111111233455668
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhcCCHHHHH
Q 036303 167 ENKMVEAESMFRSMRECGVVPN-LYTYNALMDGYCKVADVNRALEFYHEMLHHNLQP-NVVTFGVLMDGLCKVGELRAAG 244 (605)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 244 (605)
.+..++|...++- ..++ ..+...-...+.+.|++++|+++|+.+.+.+.+. +...-..++.+-. ...+
T Consensus 92 lnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~- 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV- 161 (652)
T ss_pred cccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH-
Confidence 8999999998882 2233 3366667788899999999999999998775321 1111112221111 1111
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCC------h-hhHHHHHHHHHhcCCH
Q 036303 245 NFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFE-------ISPD------V-FTYNILIKGLCGVGQL 310 (605)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~------~-~~~~~l~~~~~~~~~~ 310 (605)
++.+.... ....+...+......+...|++.+|+++++...+.+ -..+ . ..-..+.-++...|+.
T Consensus 162 ~~~q~v~~-v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPE-VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccC-CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 11222211 111122223334556778999999999999883211 0000 0 1122345566788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCH-H-HHHHHHHHHhhCCC----------CcCHHHHH-HHHHH
Q 036303 311 EGAEGLLQKMYKEGILANVVTY----NSLIDGYCKEGDM-E-KALSVCSQMTEKGV----------EPNVVTFS-SLIDG 373 (605)
Q Consensus 311 ~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~-~-~a~~~~~~~~~~~~----------~~~~~~~~-~l~~~ 373 (605)
++|..++..+++.+. +|.... |.++.. ..-.++ + .++..++....... .......+ .++..
T Consensus 241 ~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998763 354322 223221 111111 1 12222222111100 00111111 12222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH-H-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 374 QCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGL-S-KDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRIS 451 (605)
Q Consensus 374 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 451 (605)
..+..+.+.++....... .|.. .+..++..+ . +......+..++....+........+....+......|+++
T Consensus 319 --~tnk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 319 --FTNKMDQVRELSASLPGM--SPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred --HhhhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 234444444443332221 2332 333344332 2 22247778888888777643333556666677788999999
Q ss_pred HHHHHHH--------HhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCH----HHHHHHHHH
Q 036303 452 NALNFFL--------EKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD--NLRPDN----CTYTTMLRG 517 (605)
Q Consensus 452 ~A~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~----~~~~~l~~~ 517 (605)
.|++++. .+.+. ...+.+...+...+.+.++.+.|..++++++.. ...+.. .++..++..
T Consensus 394 ~A~~il~~~~~~~~ss~~~~------~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEA------KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhh------ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 9999998 33332 233344456666677777777777777776641 111222 244445555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHH
Q 036303 518 LLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSE 567 (605)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 567 (605)
-.+.|.-++|...++++.+.. ++|..+...++.+|++.. .+.|..+-+
T Consensus 468 ~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 557899999999999999743 457888888888888764 566665443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.2e-12 Score=107.98 Aligned_cols=228 Identities=14% Similarity=0.036 Sum_probs=106.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036303 264 CLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEG 343 (605)
Q Consensus 264 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 343 (605)
.+..+|.+.|.+.+|.+.|+...+. .|-+.||..+..+|.+..+++.|+.++.+-.+. ++.|+.....+.+.+...+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 3445555555555555555554442 234444555555555555555555555554443 1223323333444444455
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036303 344 DMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYK 423 (605)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 423 (605)
+.++|.++|+...+.. +.+......+...|.-.++++-|+.+|++++..|.. ++..|..+.-+|.-.++++-++..|.
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 5555555555554442 223344444444444455555555555555555433 44445555555555555555555555
Q ss_pred HHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 424 EMLEAKITPS--VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 424 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
..+..-..|+ ..+|..+.......|++.-|.+.|+-.+... ..+..+++.+...-.+.|++++|..++..+..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-----~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-----AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-----cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 4443322222 2334444444444445555555444444332 23334444444444444555555555444443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-10 Score=113.69 Aligned_cols=485 Identities=13% Similarity=0.088 Sum_probs=249.2
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 036303 72 LWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIE 151 (605)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 151 (605)
+...+..+..|+..+|..++.-|+..|+.+.|- +|..|.-...+.+...|+.++......++.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 333445566777788888888888888888877 8888877777777778888888877777777665 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHH----HCCCCCCcccHH---------------HHHHHHhccCChHHHH
Q 036303 152 PTVVIYTILIHGLCNENKMVE---AESMFRSMR----ECGVVPNLYTYN---------------ALMDGYCKVADVNRAL 209 (605)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~p~~~~~~---------------~l~~~~~~~~~~~~a~ 209 (605)
|...+|..|..+|...|+... ..+.+..+. ..|+. ....|. ..+....-.|-++.++
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888654 222111111 11221 111111 1122222233344444
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036303 210 EFYHEMLHHNLQPNVVTFGVLMDGLCKVG-ELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKF 288 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 288 (605)
+++..+.... .+. .+..+++-+.... .+++-..+.+...+ .+++.++...+.+-...|+.+.|..++.+|.+.
T Consensus 160 kll~~~Pvsa--~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAKVPVSA--WNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhhCCccc--ccc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 4443332211 010 1111233322222 22333333333332 477788888888888888888888888888888
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHH
Q 036303 289 EISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFS 368 (605)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (605)
|++.+..-|..++-+ .++...++.+++-|...|+.|+..|+...+..+...|....+ +.|. ++...+.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~s-q~~hg~t 301 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEGS-QLAHGFT 301 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------cccc-chhhhhh
Confidence 887777766666544 677777777888888888888888887777666664431111 1122 1222222
Q ss_pred HHHHHHHhcC-----CHHH-----HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C-CCHH
Q 036303 369 SLIDGQCKAG-----NIDA-----AMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKI--T-PSVF 435 (605)
Q Consensus 369 ~l~~~~~~~~-----~~~~-----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~-~~~~ 435 (605)
+-...-.-.| +.+. ....+.+..-.|+......|....+ ...+|..++...+...+..... . .+..
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 2222222222 1111 1112222222243333344443333 3346777888888777754211 1 2233
Q ss_pred HHHHHHHHHHhcC----------------------CHHHHHHHHHHhhhcc------------CCCCCC-------ccHH
Q 036303 436 TVSSLIHGLFKNG----------------------RISNALNFFLEKTDKT------------DGGYCS-------PNHV 474 (605)
Q Consensus 436 ~~~~l~~~~~~~g----------------------~~~~A~~~~~~~~~~~------------~~~~~~-------~~~~ 474 (605)
.+..++.-|.+.- ...+..+......+.. -..... +-..
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ird 460 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRD 460 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHH
Confidence 3433333332211 1111111111110000 000000 0001
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCccHHHHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKM--GIVPDAVINQVMVRG 552 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~ 552 (605)
.-+.++..+...-+..++...-++.... .-| ..|..|++-+....+.+.|..+.++.... .+.-|..-+..+.+.
T Consensus 461 i~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 461 IANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 1122333333333344444333333221 111 45677777777777777777777766532 123345566777777
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCCCccchhhhhhccc
Q 036303 553 YQENGDLKSAFRCSEFLKESRIGSSETEGHTTRSFLGHLK 592 (605)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (605)
+.+.+....+.++.+.+++ ...+.+......+.++.+..
T Consensus 538 L~r~~~l~dl~tiL~e~ks-~a~n~~~~a~~~f~~lns~a 576 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKS-SAENEPLVAIILFPLLNSGA 576 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhH-HhhCCchHHHHHHHHHhhhh
Confidence 8888888888877777776 33334433333444444433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-11 Score=118.86 Aligned_cols=216 Identities=12% Similarity=0.033 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH---------ccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 100 FDSVWEFYEEMVLCGLVADVVTYGVLIDCCC---------GQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKM 170 (605)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (605)
+++|...|++.....+. +...|..+..++. ..+++++|...+++..+.+ +.+..++..+..++...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 45666666666655322 3344444443332 1233566666666666653 22455566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 171 VEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHM 250 (605)
Q Consensus 171 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (605)
++|...|++..+.++. +...+..+...+...|++++|+..+++.++.+ +.+...+..++..+...|++++|...++++
T Consensus 355 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 6666666666665432 34455566666666666666666666666542 112222233333444566666666666666
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 251 AKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYK 322 (605)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 322 (605)
.+...+.+...+..+..++...|++++|...+.++.... +.+....+.+...|...| +.|...++.+.+
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 543322233345555566666666666666666654421 112223334444445555 355555555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.6e-11 Score=119.66 Aligned_cols=255 Identities=14% Similarity=0.066 Sum_probs=180.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 036303 309 QLEGAEGLLQKMYKEGILANVVTYNSLIDGYC---------KEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGN 379 (605)
Q Consensus 309 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 379 (605)
..++|...+++..+..+ .+...+..+..++. ..+++++|...++++.+.++ .+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence 46788888888887642 24455555555443 23457899999999998753 367788888888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 380 IDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLE 459 (605)
Q Consensus 380 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (605)
+++|...|++++..+ +.+...+..+...+...|++++|...++++++.+ +.+......++..+...|++++|+..+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999998874 3356677888888999999999999999999875 23333344445556678899999999998
Q ss_pred hhhccCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 460 KTDKTDGGYCSP-NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKM 537 (605)
Q Consensus 460 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 537 (605)
..... +| ++..+..+..++...|++++|...++++.. ..|+.. ....+...|...| ++|...++.+.+.
T Consensus 432 ~l~~~-----~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 432 LRSQH-----LQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHhc-----cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 87643 23 355567788888899999999999988765 455544 4444555666666 4777777776642
Q ss_pred -CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 538 -GIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 538 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
...+.. .......|.-.|+.+.+..+ +++.+.+.-..++
T Consensus 503 ~~~~~~~--~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~ 542 (553)
T PRK12370 503 EQRIDNN--PGLLPLVLVAHGEAIAEKMW-NKFKNEDNIWFKR 542 (553)
T ss_pred hhHhhcC--chHHHHHHHHHhhhHHHHHH-HHhhccchHhhhh
Confidence 112211 12255667778888888766 8888766544433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.2e-11 Score=105.53 Aligned_cols=196 Identities=12% Similarity=0.077 Sum_probs=94.5
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 036303 52 PSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCC 129 (605)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (605)
+..+..++..+...|++++|...+++. ..+.+..++..++..+...|++++|.+.+++.....+ .+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 344555556666666666666666554 1233344555555555555666666666655555432 2344455555555
Q ss_pred HccCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHH
Q 036303 130 CGQGDVMKALNLFDEMIDKGI-EPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRA 208 (605)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 208 (605)
...|++++|...++....... +.....+..+..++...|++++|...+++.....+. +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555554311 112233444444555555555555555555443221 233444444444455555555
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 209 LEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHM 250 (605)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (605)
.+.+++.... .+.+...+..++..+...|+.+.|..+.+.+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555544443 1222333333344444444444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-10 Score=106.80 Aligned_cols=226 Identities=12% Similarity=0.017 Sum_probs=147.2
Q ss_pred CCHHHHHHHHHHHhhCC---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 036303 343 GDMEKALSVCSQMTEKG---VEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETL 419 (605)
Q Consensus 343 ~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 419 (605)
+..+.++.-+.+++... .......|..+...+...|++++|...|.+.+... +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34555666666666431 11123456667777788888888888888887764 335677888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036303 420 RLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDM 499 (605)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (605)
..|++.++.. +.+..++..++.++...|++++|++.++..+... |+..........+...+++++|...+++.
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~------P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD------PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 8888888765 4456677778888888888888888888888753 33221122222334567888888888765
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 500 RSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKM---G--IVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 500 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
... ..|+...+ ..+....|+..++ +.++.+.+. . +.| ...+|..++.++.+.|++++|+..|+++.+.+
T Consensus 192 ~~~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEK-LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Hhh-CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 542 23332221 2233345555443 344444421 1 112 35678889999999999999999999999988
Q ss_pred CCCCCCCc
Q 036303 574 IGSSETEG 581 (605)
Q Consensus 574 ~~~~~~~~ 581 (605)
|.+...+.
T Consensus 267 ~~~~~e~~ 274 (296)
T PRK11189 267 VYNFVEHR 274 (296)
T ss_pred CchHHHHH
Confidence 76554433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-09 Score=104.48 Aligned_cols=185 Identities=11% Similarity=0.044 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 346 EKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEM 425 (605)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 425 (605)
..|+..+.+.++.. ..+..+|+.|.-. ...|++.-+.-.|-+..... +....+|..+...+....+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 45666776666652 2255556555444 55566666666665554432 334556666666677777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---
Q 036303 426 LEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD--- 502 (605)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 502 (605)
.... |.+...|..........|+.-++..+|..........+--++..-|.+........|+.++-+...+++...
T Consensus 877 qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 7654 444555555444555666666666666553222222223444444444333444555555444333333221
Q ss_pred -----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 503 -----NLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADM 534 (605)
Q Consensus 503 -----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (605)
+-.|+ ...|...+....+.+.+.+|.....+.
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 12233 234555555555555555555544443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-10 Score=109.35 Aligned_cols=241 Identities=19% Similarity=0.192 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CC
Q 036303 331 TYNSLIDGYCKEGDMEKALSVCSQMTEK-----GV-EPNVV-TFSSLIDGQCKAGNIDAAMGLYTEMVIK-----SL-VP 397 (605)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~ 397 (605)
+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++.+|..+|+++... |. .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333455555555555555555444332 10 12222 2233556666777777777777766543 11 11
Q ss_pred -CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC
Q 036303 398 -DVVVFTALIDGLSKDGNMKETLRLYKEMLEA-----K-ITPSV-FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC 469 (605)
Q Consensus 398 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 469 (605)
-..+++.|..+|.+.|++++|...++...+. + ..|.. ..++.++..+...+++++|..+++...+......-
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1235666777778888887777776665432 1 12222 23566777788889999999998877765431111
Q ss_pred Ccc---HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 036303 470 SPN---HVLYAAIIQALCYDGQILKASKLFSDMRSD-----N-LRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIK--- 536 (605)
Q Consensus 470 ~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 536 (605)
..+ ..+++.+...|...|++++|.+++++++.. | ..+. ...++.+...|.+.+++.+|.++|.+.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 111 356789999999999999999999998762 1 1222 44788899999999999999998887653
Q ss_pred -CCC-Ccc-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 537 -MGI-VPD-AVINQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 537 -~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
.|. .|+ ..+|..|+.+|.+.|+++.|.++.+++..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 221 233 67889999999999999999999888773
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-10 Score=107.73 Aligned_cols=237 Identities=17% Similarity=0.125 Sum_probs=155.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC--CcCH
Q 036303 299 ILIKGLCGVGQLEGAEGLLQKMYKE-----G-ILANVV-TYNSLIDGYCKEGDMEKALSVCSQMTEK-----GV--EPNV 364 (605)
Q Consensus 299 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~ 364 (605)
.+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++... |. +.-.
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444444445555554444444332 1 012222 2234666677777777777777776542 21 1123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC--
Q 036303 365 VTFSSLIDGQCKAGNIDAAMGLYTEMVIK-----S-LVPDVV-VFTALIDGLSKDGNMKETLRLYKEMLEA---KITP-- 432 (605)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~-- 432 (605)
.+++.|...|.+.|++++|...++.+... + ..|... .++.+...+...+++++|..++++..+. -+.+
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 45666777778888887777776665432 1 122222 3455666788888999999888876542 1112
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc---HHHHHHHHHHHHccCCHHHHHHHHHHHHh----CC
Q 036303 433 --SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN---HVLYAAIIQALCYDGQILKASKLFSDMRS----DN 503 (605)
Q Consensus 433 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 503 (605)
-..++..++..|...|++++|.+++++++......+...+ ...++.+...|.+.+++.+|.++|.+... .|
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 2447889999999999999999999999886543322222 34577888899999999999999887654 22
Q ss_pred -CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 504 -LRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 504 -~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
-.|+.. +|..|..+|.+.|++++|.++.+...
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 234444 89999999999999999999988776
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-09 Score=106.69 Aligned_cols=274 Identities=16% Similarity=0.198 Sum_probs=179.2
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 105 EFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECG 184 (605)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (605)
.++-.+...|+.|+..+|..+|.-|+..|+.+.|- +|..|.-...+.+...++.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34556666778888888888888888888888777 7777777666667777888887777777777665
Q ss_pred CCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHhhHH
Q 036303 185 VVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAK-FGVFPNIFVYN 263 (605)
Q Consensus 185 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ 263 (605)
.|...+|..|..+|...|++.. ++..++ ....+...+...|.-..-..++..+.- -+.-|+. .
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~ 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---E 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---H
Confidence 4677788888888888887655 222222 122233344455554444455444321 1122332 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036303 264 CLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVG-QLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKE 342 (605)
Q Consensus 264 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 342 (605)
..+......|-++.+++++..+....... .+..++.-+.... .+++-..+.+...+ .|++.++..++.+-...
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 34444566777777777776654322111 1111233333222 23333333333332 47888899999888889
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 036303 343 GDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGN 414 (605)
Q Consensus 343 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (605)
|+.+.|..++..|.+.|++.+...|-.|+-+ .++...+..+++-|...|+.|+..|+...+..+...|.
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999988888777776655 78888888888888888999999988877777776544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-08 Score=92.52 Aligned_cols=424 Identities=15% Similarity=0.056 Sum_probs=216.3
Q ss_pred HHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChh
Q 036303 59 IIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVM 136 (605)
Q Consensus 59 ~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 136 (605)
..+.+..|+++.|+..|.+. ..++|...|..-..+|...|++++|.+=-.+..+..+. -+..|.....++.-.|+++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHH
Confidence 34556678888888887765 34556666777777777788887777766666665322 3457777777777778888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH-----HHHhccCChHHHHHH
Q 036303 137 KALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALM-----DGYCKVADVNRALEF 211 (605)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-----~~~~~~~~~~~a~~~ 211 (605)
+|+..|.+-++.. +-+...+..+..++... .. +.+.|. ++..|..+. +.+.....+...++.
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~~-~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLED--YA-ADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--HH-hhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 8888887777663 22444555555555110 00 000110 111111111 111111111111111
Q ss_pred HHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHH-HHHHHHHH-HCCCCC----------------------CHhhHHHHH
Q 036303 212 YHEMLHH-NLQPNVVTFGVLMDGLCKVGELRAA-GNFFVHMA-KFGVFP----------------------NIFVYNCLI 266 (605)
Q Consensus 212 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~-~~~~~~----------------------~~~~~~~l~ 266 (605)
+..-... +...+ ...++.+.......+.- ...-..+. ..+..| -..-...+.
T Consensus 155 ~~~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lg 231 (539)
T KOG0548|consen 155 IQKNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELG 231 (539)
T ss_pred hhcCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHH
Confidence 1100000 00000 00011111000000000 00000000 000000 111234456
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHH
Q 036303 267 DGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNS-------LIDGY 339 (605)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~ 339 (605)
....+..++..|.+.+....... .++.-++....+|...|.+..+........+.|.. ...-++. +..+|
T Consensus 232 naaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 232 NAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhh
Confidence 66666777777777777776644 45555566666777777777776666665554421 1222222 23344
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 036303 340 CKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETL 419 (605)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 419 (605)
.+.++++.++..|.+.......|+. ..+....+++....+...-.+... ..-...-...+.+.|++..|+
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHH
Confidence 5556677777777776554333222 222333444444444333322111 111122245566777778888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036303 420 RLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDM 499 (605)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (605)
..|.+++..+ |.|...|.....+|.+.|.+..|++-.+..++.. ++....|..-+.++....++++|.+.|++.
T Consensus 379 ~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-----p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 379 KHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-----PNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777766 5667777777777777777777777777776642 333455555555666667777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHh
Q 036303 500 RSDNLRPDNCTYTTMLRGLLR 520 (605)
Q Consensus 500 ~~~~~~p~~~~~~~l~~~~~~ 520 (605)
++ ..|+..-+...+.-|..
T Consensus 453 le--~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 453 LE--LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred Hh--cCchhHHHHHHHHHHHH
Confidence 76 45666555444444444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.9e-08 Score=90.62 Aligned_cols=421 Identities=16% Similarity=0.129 Sum_probs=205.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 036303 91 LNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPT-VVIYTILIHGLCNENK 169 (605)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 169 (605)
..+....|+++.|+..|-+.+...+. +...|..-..+|...|++++|++=-.+-.+. .|+ ...|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 44556788889999988888887544 7778888888888888888888877777765 455 4478888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHH-----HHHHhcCCHHHHH
Q 036303 170 MVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLM-----DGLCKVGELRAAG 244 (605)
Q Consensus 170 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~ 244 (605)
+++|+..|.+-++..+. +...+..+..++. .+.+. +.. -.++..+..+. +.+.....+.
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~--- 149 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAYL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYV--- 149 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHH---
Confidence 88888888888776433 4455555666551 11111 110 00111111111 0010111111
Q ss_pred HHHHHHHHCCCCCCHhhH---HHHHHHHHhcCCHHH-HHHHHHHH-HhCCCCC----------------------ChhhH
Q 036303 245 NFFVHMAKFGVFPNIFVY---NCLIDGHCKAGNLFE-AMSLCSEM-EKFEISP----------------------DVFTY 297 (605)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~-a~~~~~~~-~~~~~~~----------------------~~~~~ 297 (605)
.++..+.+ + +.+...| ..++.+.......+. ....-..+ ...+..| -..-.
T Consensus 150 ~~l~~~~~-~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 150 KILEIIQK-N-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHHhhc-C-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 11111111 0 0000000 001111100000000 00000000 0000000 00112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHH-------H
Q 036303 298 NILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSS-------L 370 (605)
Q Consensus 298 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l 370 (605)
..+..+..+..+++.|.+.+....... -+..-++....+|...|.+..+........+.|.. ...-|+. +
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 334445555556666666666665543 24444555555666666666666555555554322 1112222 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 036303 371 IDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPS-VFTVSSLIHGLFKNGR 449 (605)
Q Consensus 371 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 449 (605)
..+|.+.++++.++..|.+.+.....|+. ..+....+++....+...-.+ |. ..-...-+..+.+.|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccC
Confidence 22344445556666666554443222111 111222333333333322221 11 1112222455566666
Q ss_pred HHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 036303 450 ISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVM 528 (605)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~ 528 (605)
+..|++.|.++++.. +.|...|.....+|.+.|.+..|++-.+..++ +.|+.. .|..-+.++....+|++|.
T Consensus 374 y~~Av~~YteAIkr~-----P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-----PEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred HHHHHHHHHHHHhcC-----CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776666653 45566666666666666666666666666665 344433 4555555555566666666
Q ss_pred HHHHHHHHCCCCc-cHHHHHHHHHHHHh
Q 036303 529 MLLADMIKMGIVP-DAVINQVMVRGYQE 555 (605)
Q Consensus 529 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 555 (605)
+.|.+.++. .| +..+...+.+++..
T Consensus 447 eay~eale~--dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 447 EAYQEALEL--DPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHhc--CchhHHHHHHHHHHHHH
Confidence 666666653 34 34444445544444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-08 Score=97.75 Aligned_cols=486 Identities=10% Similarity=-0.022 Sum_probs=272.7
Q ss_pred HHHHHhcCChHHHHHHHHhc-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChh
Q 036303 59 IIAFSEMGHIEEALWVYRKI-E-VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVM 136 (605)
Q Consensus 59 ~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 136 (605)
+..|.+ .+...|+..|-+. + .+.-..+|..++..|....+...|...|+.+...+. .+..........|++..+++
T Consensus 466 a~~~~r-K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we 543 (1238)
T KOG1127|consen 466 ALGCMR-KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWE 543 (1238)
T ss_pred HHHHhh-hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHH
Confidence 333444 3366666666544 2 223346677777777766677778888887777642 36667777778888888888
Q ss_pred HHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 036303 137 KALNLFDEMIDKGI-EPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEM 215 (605)
Q Consensus 137 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 215 (605)
.|..+.-..-+... ..-...|....-.|.+.++..+|+.-|+......+. |...|..++.+|.+.|++..|++.|.+.
T Consensus 544 ~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 544 EAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 88777333322210 001223344455566777788888888777776555 6777778888888888888888888776
Q ss_pred HhCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 036303 216 LHHNLQPN-VVTFGVLMDGLCKVGELRAAGNFFVHMAKFG------VFPNIFVYNCLIDGHCKAGNLFEAMSLCSEME-- 286 (605)
Q Consensus 216 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 286 (605)
... .|+ ...-......-+..|.+.++...+..+.... ...-..++..+...+...|-..++.+.++...
T Consensus 623 s~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 623 SLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred Hhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 653 232 2222233344566777777777776665421 01112222222222333333334444443322
Q ss_pred -----hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHH
Q 036303 287 -----KFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDM---E---KALSVCSQM 355 (605)
Q Consensus 287 -----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~ 355 (605)
.+....+...|..+..+ ..+|.... .+ .|+......+..-....+.. + -+.+.+-.-
T Consensus 701 f~~~l~h~~~~~~~~Wi~asda----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h 768 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDA----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH 768 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHH----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH
Confidence 22111222222222222 22222222 11 12222222221111112211 1 111222111
Q ss_pred hhCCCCcCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 356 TEKGVEPNVVTFSSLIDGQCK----A----GNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLE 427 (605)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 427 (605)
.+. ..+..+|..++..|.+ . .+...|+..+...++.. ..+..+|+.|.-. ...|++.-+...|-+...
T Consensus 769 lsl--~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 769 LSL--AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred HHH--hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh
Confidence 111 1123344444443333 1 23346777777777652 2355566665544 666888888888877766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CC
Q 036303 428 AKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS----DN 503 (605)
Q Consensus 428 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 503 (605)
.. +....+|..++..+.+..+++.|...|.....-. +.|...|..........|+.-++..+|.---+ .|
T Consensus 845 se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-----P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g 918 (1238)
T KOG1127|consen 845 SE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-----PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG 918 (1238)
T ss_pred cc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-----chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc
Confidence 54 5567788888888999999999999998877643 55667776666666678888888888765222 24
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------CCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 504 LRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIK---------MGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 504 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
-.|+...|.....-....|+.++-+...+++-. .+.+.+...|...+....+.+.++.|.....++..
T Consensus 919 ka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 919 KAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred ccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554555567777665554444321 23333577888888899999999999887777653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-07 Score=89.64 Aligned_cols=484 Identities=12% Similarity=0.068 Sum_probs=232.1
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCH-----------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAI-----------QACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADV 119 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 119 (605)
+..+|..++..+.+..+++-|...+..+++.... ..-..+...-...|.+++|..+|++..+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 4456777777777777777777666555211111 11122233334567777777777766542
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------CCC----
Q 036303 120 VTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRE----------CGV---- 185 (605)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~---- 185 (605)
..|=..|-..|.|++|.++-+.=-+.. =..+|.....-+...++.+.|++.|++... ..+
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 233345556677777777665433221 123455555555556666666666654321 100
Q ss_pred -----CCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 036303 186 -----VPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIF 260 (605)
Q Consensus 186 -----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 260 (605)
..|...|......+-..|+.+.|+.+|....+ |..+.+..|-.|+.++|-++-++- .|..
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~A 968 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKA 968 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHH
Confidence 11223344444444455555555555554332 333444455556666665554432 2455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036303 261 VYNCLIDGHCKAGNLFEAMSLCSEMEKFEIS----PDVFTYNILIKGLCGVG--QLEGAEGLLQKMYKEGILANVVTYNS 334 (605)
Q Consensus 261 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ 334 (605)
....+.+.|...|++.+|...|.+....... .....-..|...+...| +.-.|-++|++.- . -+..
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~ 1040 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHK 1040 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhH
Confidence 5666788888888888888887765431100 00000001111111111 1222233333221 0 0122
Q ss_pred HHHHHHhcCCHHHHHHHHHH--------Hhh--CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------CC
Q 036303 335 LIDGYCKEGDMEKALSVCSQ--------MTE--KGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVI----------KS 394 (605)
Q Consensus 335 l~~~~~~~~~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~ 394 (605)
.+..|-+.|.+.+|+++-=+ ++. .....|+...+.-...++...++++|..++-.... ++
T Consensus 1041 AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~n 1120 (1416)
T KOG3617|consen 1041 AVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRN 1120 (1416)
T ss_pred HHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 23345566666655543211 111 12334566666666666666677776665543321 11
Q ss_pred ----------------CCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHH----------HHCCCCC----------CH
Q 036303 395 ----------------LVPDV----VVFTALIDGLSKDGNMKETLRLYKEM----------LEAKITP----------SV 434 (605)
Q Consensus 395 ----------------~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~----------~~~~~~~----------~~ 434 (605)
-.|+. ..+..+...|.++|.+..|.+-|.+. ++.|-.. ..
T Consensus 1121 v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqk 1200 (1416)
T KOG3617|consen 1121 VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQK 1200 (1416)
T ss_pred CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccc
Confidence 11222 24555666777888877776655432 1211000 00
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH---------------ccCCHHHHHHHHHHH
Q 036303 435 FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC---------------YDGQILKASKLFSDM 499 (605)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~~ 499 (605)
.+| .+..-|.+.-+|.+--++.+.+..-+. ...++..+...|. ..|-.++|-+.+.++
T Consensus 1201 EiY-ImAANyLQtlDWq~~pq~mK~I~tFYT------Kgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka 1273 (1416)
T KOG3617|consen 1201 EIY-IMAANYLQTLDWQDNPQTMKDIETFYT------KGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKA 1273 (1416)
T ss_pred eee-eehhhhhhhcccccChHHHhhhHhhhh------cchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHH
Confidence 000 111112222222221112111111110 0011222222221 112333444444444
Q ss_pred HhCCCCCCHHHHHHHHHHHH-----------hcCCHHHHHHHHHHHHHCCCCcc----HHHHHHHHHHHHhcCChhHHHH
Q 036303 500 RSDNLRPDNCTYTTMLRGLL-----------RAKRMLDVMMLLADMIKMGIVPD----AVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 500 ~~~~~~p~~~~~~~l~~~~~-----------~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
...+ .....++.|-.-.. -..|..+.+.-..-|++....|| ..+|-.++..+....+|..|-+
T Consensus 1274 ~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyR 1351 (1416)
T KOG3617|consen 1274 EQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYR 1351 (1416)
T ss_pred Hhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHH
Confidence 4322 11222333322111 12366667777777776554443 5678889999999999999999
Q ss_pred HHHHHHhcCCCCCC
Q 036303 565 CSEFLKESRIGSSE 578 (605)
Q Consensus 565 ~~~~~~~~~~~~~~ 578 (605)
+++.+.++.|.-+.
T Consensus 1352 al~el~~k~p~~~~ 1365 (1416)
T KOG3617|consen 1352 ALTELQKKVPNVDL 1365 (1416)
T ss_pred HHHHHhhcCCccch
Confidence 99999999887544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.4e-09 Score=87.22 Aligned_cols=197 Identities=13% Similarity=0.039 Sum_probs=150.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG 131 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (605)
+...|+-.|...|++..|..-+++. .+|.+..+|..+...|.+.|+.+.|.+.|++.+...+. +-.+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 4667788888888888888888887 35556678888888888888888888888888887433 67788888888888
Q ss_pred cCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHH
Q 036303 132 QGDVMKALNLFDEMIDKG-IEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALE 210 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 210 (605)
+|++++|...|+.....- ...-..+|..+.-+..+.|+.+.|...|++.++..+. ...+...+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 888888888888887752 1223447777777888888888888888888876543 45566677888888888888888
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 211 FYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKF 253 (605)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 253 (605)
.++.....+ .++..++-..++.-...|+-+.+-+.=..+.+.
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888887775 377777777777777788877777766665553
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.9e-09 Score=95.94 Aligned_cols=196 Identities=12% Similarity=-0.071 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 85 QACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGL 164 (605)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (605)
..|..++..+...|++++|...|++..+..+ .+...|+.+...+...|++++|...|+..++.. +-+..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455555555566666666666666655532 245556666666666666666666666665542 11344555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 036303 165 CNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAG 244 (605)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 244 (605)
...|++++|.+.|+...+..+ +..............+++++|.+.+.+..... .++...+ .......|+...+
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-
Confidence 566666666666666555422 21111111122233455666666664433221 2221111 1112223333322
Q ss_pred HHHHHHHHC---CC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036303 245 NFFVHMAKF---GV---FPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFE 289 (605)
Q Consensus 245 ~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 289 (605)
..+..+.+. .+ +.....|..+...+.+.|++++|+..|++....+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 222222211 00 1122355556666666666666666666666543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.4e-08 Score=92.12 Aligned_cols=274 Identities=16% Similarity=0.138 Sum_probs=164.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036303 265 LIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGD 344 (605)
Q Consensus 265 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (605)
.+.+-.....|.+|+.+++.+.... .-+.-|..+...|...|+++.|.++|.+.- .++..|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3455566778888888888887643 334456677788888888888888875532 34556778888888
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 345 MEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKE 424 (605)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 424 (605)
|+.|.++-.+.. |.......|..-..-+-..|++.+|.++|-.+. .|+. .++.|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 888888766543 334455566666666777888888877764332 3332 35667788888877777665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH----
Q 036303 425 MLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMR---- 500 (605)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 500 (605)
-.. ..-..+...+..-+...|++..|...|-++-. |...++.|..++-+++|-++-+.--
T Consensus 876 ~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d-------------~kaavnmyk~s~lw~dayriaktegg~n~ 939 (1636)
T KOG3616|consen 876 HHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-------------FKAAVNMYKASELWEDAYRIAKTEGGANA 939 (1636)
T ss_pred hCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh-------------HHHHHHHhhhhhhHHHHHHHHhccccccH
Confidence 432 12234555666667777888877777765433 3334444555555555544433110
Q ss_pred --------hCCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 036303 501 --------SDNLRPDNC--------TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 501 --------~~~~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
...+.-+.. .+..-++-.+..+.++-|..+-.-..+. ...++...++-.+...|++++|-+
T Consensus 940 ~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~---k~~~vhlk~a~~ledegk~edask 1016 (1636)
T KOG3616|consen 940 EKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD---KMGEVHLKLAMFLEDEGKFEDASK 1016 (1636)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc---cCccchhHHhhhhhhccchhhhhH
Confidence 000101100 0111112222334444444443322221 134556667778889999999999
Q ss_pred HHHHHHhcCCCCCCC
Q 036303 565 CSEFLKESRIGSSET 579 (605)
Q Consensus 565 ~~~~~~~~~~~~~~~ 579 (605)
-|-.+.+++.-+..|
T Consensus 1017 hyveaiklntynitw 1031 (1636)
T KOG3616|consen 1017 HYVEAIKLNTYNITW 1031 (1636)
T ss_pred hhHHHhhcccccchh
Confidence 888888888776655
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-07 Score=80.15 Aligned_cols=309 Identities=15% Similarity=0.120 Sum_probs=154.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH---HHHHHhccCChHHHHHHHHHHHhCCCCCCcch-HHHHHH
Q 036303 157 YTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNA---LMDGYCKVADVNRALEFYHEMLHHNLQPNVVT-FGVLMD 232 (605)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~ 232 (605)
...+...+...|++..|+.-|...++. |+..|.+ -...|...|+..-|+.-+.+.++. +||-.. -..-..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 334444555555555555555555553 2222222 233455555555555555555543 333211 111223
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 036303 233 GLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEG 312 (605)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 312 (605)
.+.+.|.++.|..-|+.+++.. |+..+ ...++.+.-..++-. .....+..+...|+...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhh
Confidence 3455666666666666665542 22111 011111100000000 11122233444566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 313 AEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVI 392 (605)
Q Consensus 313 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 392 (605)
|+..+..+++.. +.|...+..-..+|...|++..|+.-++.+.+.. ..+...+..+-..+...|+.+.++...++.++
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 666666665543 3455555555666666666666666555555442 23445555555556666666666666666555
Q ss_pred CCCCCCHhhHHHH-------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHH
Q 036303 393 KSLVPDVVVFTAL-------------IDGLSKDGNMKETLRLYKEMLEAKITPSV---FTVSSLIHGLFKNGRISNALNF 456 (605)
Q Consensus 393 ~~~~~~~~~~~~l-------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~ 456 (605)
. .||....... +......++|.++++-.+...+....... ..+..+-.++...|++.+|++.
T Consensus 252 l--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 L--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred c--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 4 3443321111 11123455666666666666655322111 1233444555666777777777
Q ss_pred HHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 457 FLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
..+++... +.|..++..-..+|.....++.|+.-|+++.+
T Consensus 330 C~evL~~d-----~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 330 CKEVLDID-----PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHhcC-----chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 77777642 33466666667777777777777777777776
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-07 Score=82.86 Aligned_cols=320 Identities=12% Similarity=0.054 Sum_probs=157.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH-HHHH
Q 036303 223 NVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTY-NILI 301 (605)
Q Consensus 223 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 301 (605)
++.-...+...+...|++..|+.-|..+++.. +.+..++..-...|...|+...|+.-+....+. +||-..- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34444556666666777777777777766532 222333333455666677777777777776663 4554321 1223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHH------------HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHH
Q 036303 302 KGLCGVGQLEGAEGLLQKMYKEGILANV--VTY------------NSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTF 367 (605)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (605)
..+.++|.++.|..-|+.+++.....+. ..+ ...+..+...|+...|+.....+++.. +.+...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 3456677777777777777765321110 011 111222233444444444444444431 2344444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036303 368 SSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKN 447 (605)
Q Consensus 368 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (605)
..-..+|...|++..|+.-++.+.+.. ..+..++..+-..+...|+.+.++...++.++.+ |+.........-
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKk---- 265 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKK---- 265 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHH----
Confidence 444444444444444444444443332 1123333334444444444444444444444432 222211100000
Q ss_pred CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcC
Q 036303 448 GRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-----NCTYTTMLRGLLRAK 522 (605)
Q Consensus 448 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g 522 (605)
+.+..+.++. +......++|.++++-.++.++. .|. ...+..+-.++...|
T Consensus 266 --lkKv~K~les--------------------~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 266 --LKKVVKSLES--------------------AEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred --HHHHHHHHHH--------------------HHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccC
Confidence 0000000000 11223455666666666666552 333 113333444455567
Q ss_pred CHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 523 RMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
++.+|++...+.+. +.| |..++.--+.+|.-...++.|+.-|+++.+.++++..+
T Consensus 322 ~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred CHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 77777777776665 455 36677777777777777777777777777777665543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-07 Score=91.11 Aligned_cols=201 Identities=9% Similarity=-0.045 Sum_probs=108.7
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 036303 49 KFNPSVFSTLIIAFSEMGHIEEALWVYRKI----EVLPA-IQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYG 123 (605)
Q Consensus 49 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (605)
|..+..+..++..+...|+.++|...+... ....+ ..........+...|++++|...+++.....+ .+...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHH
Confidence 345556666777777777777766555543 11112 12222233445567777777777777776532 2333333
Q ss_pred H---HHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 036303 124 V---LIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYC 200 (605)
Q Consensus 124 ~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 200 (605)
. ........+..+.+.+.+...... .+........+..++...|++++|...+++..+..+. +...+..+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~ 159 (355)
T cd05804 82 LHLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLE 159 (355)
T ss_pred HhHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 2 111111234444444444431111 1222334445556667777777777777777765433 4455666666777
Q ss_pred ccCChHHHHHHHHHHHhCCCC-CCc--chHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 201 KVADVNRALEFYHEMLHHNLQ-PNV--VTFGVLMDGLCKVGELRAAGNFFVHMAK 252 (605)
Q Consensus 201 ~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (605)
..|++++|...+++....... ++. ..+..+...+...|++++|..+++.+..
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 777777777777766654211 111 1233456666667777777777766643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.3e-08 Score=83.23 Aligned_cols=428 Identities=13% Similarity=0.047 Sum_probs=250.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH-HHHHH
Q 036303 121 TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNA-LMDGY 199 (605)
Q Consensus 121 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~ 199 (605)
-+..++..+++..++++|++++..-.+.. +.+......|..+|....++..|...++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 46777777888889999999998888774 337778888889999999999999999998774 445444543 45667
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 036303 200 CKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAM 279 (605)
Q Consensus 200 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 279 (605)
.+.+.+..|+++...|.+.. ..-..+...-.......+++..+..+.++....+ +..+.+...-...+.|+++.|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 78888999999888776531 1111222222233345777888888877765432 4444455555567889999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHH
Q 036303 280 SLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNS-----LIDGYCKEGDMEKALSVCSQ 354 (605)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~ 354 (605)
+-|....+.+--.....|+..+. ..+.++++.|++...++++.|++.-+. ++. .+.+ ...|+. ..+...
T Consensus 165 qkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDv-rsvgNt---~~lh~S 238 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDV-RSVGNT---LVLHQS 238 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCch-hcccch---HHHHHH
Confidence 99988877543344556665554 456788999999999988877542111 100 0000 000000 000000
Q ss_pred HhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036303 355 MTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKS-LVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPS 433 (605)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 433 (605)
. -...++.-...+.+.|+++.|.+.+.+|..+. -..|+.|...+.-. -..+++.+..+-+.-++..+ |-.
T Consensus 239 a-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP 309 (459)
T KOG4340|consen 239 A-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFP 309 (459)
T ss_pred H-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCC
Confidence 0 12234444555677888888888777765332 23466666655432 22344555555555556554 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH-ccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC-YDGQILKASKLFSDMRSDNLRPDNCTYT 512 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (605)
..++..++-.|++..-++-|-.++.+-....- .-.+...| .++.+++ ..-.+++|.+-++.+... .........
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn~~lTy---k~L~~Yly-~LLdaLIt~qT~pEea~KKL~~La~~-l~~kLRklA 384 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAENAHLTY---KFLTPYLY-DLLDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLA 384 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhH---HHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 67888888888888888888887765332110 01122223 3344444 334667776666554431 000000111
Q ss_pred HHHHHHHhcCCHH---HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 513 TMLRGLLRAKRML---DVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 513 ~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
.-++.-...++-. +|++-+++.++ .-..+.-..++.|++..|+..+.+.|..-.+.=.+++.|
T Consensus 385 i~vQe~r~~~dd~a~R~ai~~Yd~~LE----~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~W 450 (459)
T KOG4340|consen 385 IQVQEARHNRDDEAIRKAVNEYDETLE----KYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVW 450 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhccccccHHHHHHHHHHHhhhccccee
Confidence 1111111122211 12222232222 112234456778999999999999999888876666665
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.5e-08 Score=83.15 Aligned_cols=287 Identities=14% Similarity=0.076 Sum_probs=145.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH-HHHHHHHc
Q 036303 55 FSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYG-VLIDCCCG 131 (605)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~ 131 (605)
+...+..+.+..++++|++++..- ..+.+......+..+|....++..|.+.|+++-.. .|...-|. .-.+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 444555556666777777766644 23335555566666666777777777777776654 22232222 12344456
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHH
Q 036303 132 QGDVMKALNLFDEMIDKGIEPTVV--IYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRAL 209 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 209 (605)
.+.+.+|+.+...|... +... ....-..+....+++..+..++++....| +..+.+...-...+.|+++.|+
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 66677777776666532 1111 11111122334566666666666655322 3334444444455667777777
Q ss_pred HHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----------------------------h
Q 036303 210 EFYHEMLHH-NLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNI----------------------------F 260 (605)
Q Consensus 210 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------~ 260 (605)
+-|+...+. |..| ...| .+.-+..+.++++.|++...++++.|+...+ .
T Consensus 165 qkFqaAlqvsGyqp-llAY-niALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 165 QKFQAALQVSGYQP-LLAY-NLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHhhcCCCc-hhHH-HHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 777666654 3332 2223 3334445566677777776666665432111 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036303 261 VYNCLIDGHCKAGNLFEAMSLCSEMEKF-EISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGY 339 (605)
Q Consensus 261 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 339 (605)
.+|.-...+.+.|+++.|.+.+..|.-. ....|++|...+.-.- ..+++.+..+-+.-+...++ ....||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 2222233345566666666666655321 1123444444333221 12334444444444444432 3445566666666
Q ss_pred HhcCCHHHHHHHHH
Q 036303 340 CKEGDMEKALSVCS 353 (605)
Q Consensus 340 ~~~~~~~~a~~~~~ 353 (605)
++..-++.|.+++.
T Consensus 321 CKNeyf~lAADvLA 334 (459)
T KOG4340|consen 321 CKNEYFDLAADVLA 334 (459)
T ss_pred hhhHHHhHHHHHHh
Confidence 66666666665554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-07 Score=89.28 Aligned_cols=263 Identities=13% Similarity=0.027 Sum_probs=132.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 036303 304 LCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYC----KEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGN 379 (605)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 379 (605)
+...|++++|...+++..+.. +.+...+.. ...+. ..+..+.+.+.+..... ..+........+...+...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCC
Confidence 445566666666666665542 223323221 11111 22333444444433111 112223334445556666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHH
Q 036303 380 IDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKIT-PSV--FTVSSLIHGLFKNGRISNALNF 456 (605)
Q Consensus 380 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~ 456 (605)
+++|...+++..... +.+...+..+...+...|++++|...+++....... ++. ..+..+...+...|++++|+..
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777776653 234455566666677777777777777776654311 222 2234566667777777777777
Q ss_pred HHHhhhccCCCCCCccHHHH-H--HHHHHHHccCCHHHHHHH---HHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 457 FLEKTDKTDGGYCSPNHVLY-A--AIIQALCYDGQILKASKL---FSDMRSDN-LRPDNCTYTTMLRGLLRAKRMLDVMM 529 (605)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~ 529 (605)
+++...... ..+..... + .++.-+...|....+.++ ........ ...........+.++...|+.++|..
T Consensus 209 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 209 YDTHIAPSA---ESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHhcccc---CCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 777643211 01111111 1 222223333432222222 11111100 01111222245556667788888888
Q ss_pred HHHHHHHCCCC-------c-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 530 LLADMIKMGIV-------P-DAVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 530 ~~~~~~~~~~~-------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
.++.+...... . ...+....+.++...|++++|.+.+..+....
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88777642211 1 24444555667778888888888888777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.7e-06 Score=81.95 Aligned_cols=203 Identities=14% Similarity=0.162 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 036303 330 VTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGL 409 (605)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (605)
..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++-.+++....+....|... +.++-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 34455555555555555554443221 244455555555555555555555555444443333322 3445555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCH
Q 036303 410 SKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQI 489 (605)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 489 (605)
++.++..+-.++. . .|+..-...++.-|...|.++.|.-+|.... .|..+...++..|++
T Consensus 1177 Akt~rl~elE~fi----~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS-------------N~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI----A---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS-------------NFAKLASTLVYLGEY 1236 (1666)
T ss_pred HHhchHHHHHHHh----c---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh-------------hHHHHHHHHHHHHHH
Confidence 5555544433321 1 3455555555555555555555555544322 244555555555666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 490 LKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
+.|...-+++ .+..+|..+--+|...+.+.- .+|....+.....-+..++.-|...|-+++-+..++..
T Consensus 1237 Q~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrl-----AQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1237 QGAVDAARKA------NSTKTWKEVCFACVDKEEFRL-----AQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHhhhc------cchhHHHHHHHHHhchhhhhH-----HHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 6665554433 233466666666655444332 23333444445666667777777777777777766655
Q ss_pred Hh
Q 036303 570 KE 571 (605)
Q Consensus 570 ~~ 571 (605)
+-
T Consensus 1306 LG 1307 (1666)
T KOG0985|consen 1306 LG 1307 (1666)
T ss_pred hc
Confidence 43
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.8e-06 Score=81.53 Aligned_cols=130 Identities=13% Similarity=0.151 Sum_probs=86.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHH-----HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 036303 50 FNPSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNAL-----LNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGV 124 (605)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (605)
.+...+-.+++.|.+.|-+.+|++.|..+..-....+...+ +..+...-.++.+.+.+..|...++..+..+.-.
T Consensus 604 FtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQ 683 (1666)
T KOG0985|consen 604 FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQ 683 (1666)
T ss_pred cccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445778999999999999999988766211111111110 1223344568888899999988877777776666
Q ss_pred HHHHHHccCChhHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 125 LIDCCCGQGDVMKALNLFDEMIDK-----------GIEPTVVIYTILIHGLCNENKMVEAESMFRS 179 (605)
Q Consensus 125 l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 179 (605)
+..-|+.+=-.+..+++|+..... ++..|+.+.--.|.+.++.|++.+..++.++
T Consensus 684 vatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 684 VATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 666666665566667777665432 2345666667788888999988887776543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-06 Score=84.15 Aligned_cols=308 Identities=17% Similarity=0.184 Sum_probs=155.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 036303 194 ALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAG 273 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (605)
+.|+.|.+.|.+.+|.+....-. ....|......+..++.+..-+++|-.+|+++.. +...+.+|.+-.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHccc
Confidence 34556666666655554332111 1223444444455555555555555555555432 111223333333
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 274 NLFEAMSLCSEMEKFEISPDVFTY-NILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVC 352 (605)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 352 (605)
-+.+|+++-+-. +|..++.. ......+...|+++.|...|-+.. .....+.+......|.+|+.++
T Consensus 689 af~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~il 755 (1636)
T KOG3616|consen 689 AFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISIL 755 (1636)
T ss_pred HHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHH
Confidence 334444333221 11111111 112223344555555555443321 1122344455566777777777
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 036303 353 SQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITP 432 (605)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (605)
+.+..... -...|..+...|...|+++.|.++|.+.- .++..+..|.+.|+|..|.++-.+.. |...
T Consensus 756 dniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~ 822 (1636)
T KOG3616|consen 756 DNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEA 822 (1636)
T ss_pred HHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--Cchh
Confidence 76666522 23345666677777777777777765321 24455666777777777777655543 2122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHH
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD--NCT 510 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~ 510 (605)
....|..-..-+-++|++.+|.++|-.+- .|+. .+..|-+.|..+..+++.++- .|+ ..|
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti~--------~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt 884 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITIG--------EPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDT 884 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEcc--------CchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHH
Confidence 23334444444566777777777665442 2332 345566667777766666553 233 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHH
Q 036303 511 YTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRC 565 (605)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 565 (605)
...+..-+...|+++.|...|-++- -|..-++.|..++-|++|.++
T Consensus 885 ~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 885 HKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence 5566666666777777766554322 233344556666666666544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-08 Score=95.66 Aligned_cols=250 Identities=12% Similarity=0.093 Sum_probs=187.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHH
Q 036303 302 KGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNID 381 (605)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 381 (605)
.-+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++..+..+ .|...+..|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHH
Confidence 34567888999999999888875 33677888888888888888899999999988853 37788888888899999989
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHH-----------HHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCC
Q 036303 382 AAMGLYTEMVIKSLVPDVVVFTALI-----------DGLSKDGNMKETLRLYKEML-EAKITPSVFTVSSLIHGLFKNGR 449 (605)
Q Consensus 382 ~a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~ 449 (605)
.|++.++..+...++ |..+. ..+..........++|-++. ..+..+|+.+...|+..|.-.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999998888765311 00000 01111112233444444444 44445888999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 036303 450 ISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVM 528 (605)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~ 528 (605)
+++|+..|+.++... +.|...||.++..++...+..+|+..|.++++ +.|+.+ ....|.-+|...|.+++|.
T Consensus 446 fdraiDcf~~AL~v~-----Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-----PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred HHHHHHHHHHHHhcC-----CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 999999999999864 55678899999999999999999999999998 889876 6778888999999999999
Q ss_pred HHHHHHHHCCC---------CccHHHHHHHHHHHHhcCChhHHHHH
Q 036303 529 MLLADMIKMGI---------VPDAVINQVMVRGYQENGDLKSAFRC 565 (605)
Q Consensus 529 ~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~ 565 (605)
+.|-.++...- .++..+|..|=.++.-.++.|-+..+
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 99887764211 11346777777777777776655443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-10 Score=73.89 Aligned_cols=49 Identities=45% Similarity=0.932 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 036303 152 PTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYC 200 (605)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 200 (605)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.3e-07 Score=97.25 Aligned_cols=345 Identities=13% Similarity=0.045 Sum_probs=216.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCCh--hhHHHHHHHHH
Q 036303 234 LCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEI------SPDV--FTYNILIKGLC 305 (605)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~l~~~~~ 305 (605)
....|+++.+...+..+.......+..........+...|+++++...+......-- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 345566666666665542111111222233445556778999999999887754210 1111 11222334556
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-cCHHHHHHHHHHHHh
Q 036303 306 GVGQLEGAEGLLQKMYKEGILANV----VTYNSLIDGYCKEGDMEKALSVCSQMTEK----GVE-PNVVTFSSLIDGQCK 376 (605)
Q Consensus 306 ~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~ 376 (605)
..|++++|...++.........+. ...+.+...+...|+++.|...+++.... |.. ........+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999988763212222 23455666778899999999999887653 111 112344566777888
Q ss_pred cCCHHHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHH
Q 036303 377 AGNIDAAMGLYTEMVIK----SLV--P-DVVVFTALIDGLSKDGNMKETLRLYKEMLEAK--ITP--SVFTVSSLIHGLF 445 (605)
Q Consensus 377 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~ 445 (605)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998876653 211 1 12234445566777899999999998876531 112 2334455666778
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCccHHHH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHh
Q 036303 446 KNGRISNALNFFLEKTDKTDGGYCSPNHVLY--AAIIQALCYDGQILKASKLFSDMRSDNLRPDN---CTYTTMLRGLLR 520 (605)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~ 520 (605)
..|++++|.+.+.+........+........ ...+..+...|+.+.|..++............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999998886532211111111011 11223445678999999998776542111111 124466677888
Q ss_pred cCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 521 AKRMLDVMMLLADMIKM----GIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 521 ~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.|++++|...++++... |... ...++..++.++.+.|+.++|...+.++.+.......
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 99999999999988752 3333 2556778899999999999999999999988654433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7e-09 Score=96.91 Aligned_cols=232 Identities=13% Similarity=0.148 Sum_probs=182.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 036303 336 IDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNM 415 (605)
Q Consensus 336 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 415 (605)
..-+.+.|++.+|.-.|+..+..++ -+...|..|.......++-..|+..+++.++.. +.+......|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 3345788999999999999998853 378899999999999999999999999999874 33667888888899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHH----H-H--HHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC
Q 036303 416 KETLRLYKEMLEAKITPSVFTVSS----L-I--HGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ 488 (605)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~----l-~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 488 (605)
..|.+.+++-+....+ -...... . . ..+.....+....++|-++....+ ...|+.....|+..|.-.|+
T Consensus 370 ~~Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~---~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP---TKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC---CCCChhHHhhhHHHHhcchH
Confidence 9999999998765311 0000000 0 0 011122234445556666555432 24778888899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHHHH
Q 036303 489 ILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFRCS 566 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 566 (605)
+++|++.|+.++. ++|+.. .|+.|..++....+.++|+..|.++++ +.|. ..+...|+-.|...|.+++|.+.+
T Consensus 446 fdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 446 FDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 9999999999998 778655 899999999999999999999999998 7786 888899999999999999999999
Q ss_pred HHHHhcCCCCC
Q 036303 567 EFLKESRIGSS 577 (605)
Q Consensus 567 ~~~~~~~~~~~ 577 (605)
=.++.+.++..
T Consensus 522 L~AL~mq~ks~ 532 (579)
T KOG1125|consen 522 LEALSMQRKSR 532 (579)
T ss_pred HHHHHhhhccc
Confidence 99888876633
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-05 Score=77.65 Aligned_cols=171 Identities=19% Similarity=0.185 Sum_probs=120.5
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhH
Q 036303 58 LIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMK 137 (605)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 137 (605)
.+......|.+++|..+|++... |..+=..|...|.+++|.++-+.--+. . -..+|......+-..++.+.
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR------~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKR------YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH------HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHH
Confidence 34446678999999999998752 344445666789999998887653322 1 23466666677777888888
Q ss_pred HHHHHHHHHhC----------CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 036303 138 ALNLFDEMIDK----------GI---------EPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDG 198 (605)
Q Consensus 138 a~~~~~~~~~~----------~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 198 (605)
|++.|++.-.. .+ ..|...|.-....+-..|+++.|+.++..... |..+++.
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence 88887764211 10 12334444444445567888888888776553 6678888
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 199 YCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAK 252 (605)
Q Consensus 199 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (605)
.+-.|+.++|-++-++ ..|......+.+.|...|++.+|..+|-++..
T Consensus 948 ~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred EeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 8889999999988765 33667788899999999999999999887654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-06 Score=95.59 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=26.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRSD----NLRPDN-CTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
..+..++...|++++|...++++... |..++. .+...+..++.+.|+.++|...+.++++
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444455555555555555544331 211111 1333344444455555555555555543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-10 Score=71.13 Aligned_cols=49 Identities=51% Similarity=0.905 Sum_probs=32.8
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036303 117 ADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLC 165 (605)
Q Consensus 117 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (605)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-05 Score=74.53 Aligned_cols=134 Identities=13% Similarity=0.237 Sum_probs=92.1
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 036303 47 IPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGV 124 (605)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (605)
..|.+-.+|+.|++-+..+ .+++++..++++ ..+....+|...+....+.++++....+|.+.+..- .+...|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 3567888999999877776 999999999988 355567899999999999999999999999998763 35666776
Q ss_pred HHHHHHcc-CChh----HHHHHHHHHHhC-CCCC-CHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHHC
Q 036303 125 LIDCCCGQ-GDVM----KALNLFDEMIDK-GIEP-TVVIYTILIHGL---------CNENKMVEAESMFRSMREC 183 (605)
Q Consensus 125 l~~~~~~~-g~~~----~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~ 183 (605)
.+..-.+. |+.. ...+.|+-.... |+++ +...|+..+..+ ..+.+++...++++++...
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 66544332 2322 233444444332 4433 334566655443 2344666777888887754
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-07 Score=82.71 Aligned_cols=225 Identities=10% Similarity=0.025 Sum_probs=153.5
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH--
Q 036303 339 YCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG-NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNM-- 415 (605)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 415 (605)
+...+..++|+.+..++++..+ -+..+|+.-..++...| ++++++..+.++..... .+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhh
Confidence 3345567778888877777632 24445555555566666 56888888888877642 2445566555555555653
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc---CC----
Q 036303 416 KETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD---GQ---- 488 (605)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~---- 488 (605)
++++.+++++++.+ +-+..+|.....++...|+++++++.++++++.. +.|..+|+....++... |.
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-----~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-----VRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-----CCchhHHHHHHHHHHhcccccccccc
Confidence 67788888888876 5678888888888888899999999999988864 55667777766655443 22
Q ss_pred HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC------
Q 036303 489 ILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRA----KRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENG------ 557 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 557 (605)
.++++...++++. ..|+.. .|..+...+... +...+|..++.+.++.+ +.+...+..|++.|+...
T Consensus 199 ~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 199 RDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred HHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhh
Confidence 2567777777777 456544 787777777662 44567888888877632 225778888999998642
Q ss_pred ------------ChhHHHHHHHHHHhcCC
Q 036303 558 ------------DLKSAFRCSEFLKESRI 574 (605)
Q Consensus 558 ------------~~~~A~~~~~~~~~~~~ 574 (605)
..++|.++++.+.+.||
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 34668888888754443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-08 Score=89.17 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=66.4
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----hcCC
Q 036303 339 YCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLS----KDGN 414 (605)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~ 414 (605)
+...|++++|++++... .+.......+.++.+.++++.|.+.++.|.+. ..| .+...+..++. ..+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchh
Confidence 33445555555444321 23444444455555555555555555555433 112 22222333222 1123
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCH-HHHH
Q 036303 415 MKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQI-LKAS 493 (605)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~ 493 (605)
+.+|..+|+++.+. .++++.+++.++.+....|++++|.+.+.+++... +.++.++..++.+....|+. +.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-----~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-----PNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHHhCCChhHHH
Confidence 55555555554432 24455555555555555555555555555555432 23344444455554555544 4444
Q ss_pred HHHHHHHh
Q 036303 494 KLFSDMRS 501 (605)
Q Consensus 494 ~~~~~~~~ 501 (605)
+.+.++..
T Consensus 257 ~~l~qL~~ 264 (290)
T PF04733_consen 257 RYLSQLKQ 264 (290)
T ss_dssp HHHHHCHH
T ss_pred HHHHHHHH
Confidence 55555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.5e-08 Score=82.58 Aligned_cols=152 Identities=10% Similarity=0.092 Sum_probs=113.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc
Q 036303 407 DGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD 486 (605)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 486 (605)
..|...|+++.+....+.+.. |. ..+...++.++++..+++.+... +.+...|..++..|...
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-----P~~~~~w~~Lg~~~~~~ 86 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-----PQNSEQWALLGEYYLWR 86 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHC
Confidence 346777877776444322221 10 01223566778888888887764 67788899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhH
Q 036303 487 GQILKASKLFSDMRSDNLRPD-NCTYTTMLRGL-LRAKR--MLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKS 561 (605)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 561 (605)
|++++|...|+++.+ +.|+ ...+..+..++ ...|+ .++|.++++++++ ..| +..++..++..+.+.|++++
T Consensus 87 g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 87 NDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHH
Confidence 999999999999988 5564 55777777764 56676 5899999999987 445 68888999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCC
Q 036303 562 AFRCSEFLKESRIGSSET 579 (605)
Q Consensus 562 A~~~~~~~~~~~~~~~~~ 579 (605)
|+..|+++.+.+|++.+.
T Consensus 163 Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 163 AIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHhhCCCCccH
Confidence 999999999998886644
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-08 Score=91.23 Aligned_cols=249 Identities=14% Similarity=0.140 Sum_probs=136.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 267 DGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDME 346 (605)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 346 (605)
+-+.-.|++..++.-.+ ........+......+..++...|+++.++ ..+.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455778887776555 222221122334445566777777766443 3333332 555555555554444434445
Q ss_pred HHHHHHHHHhhCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 347 KALSVCSQMTEKGVE-PNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEM 425 (605)
Q Consensus 347 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 425 (605)
.+..-++........ .+..........+...|++++|++++... .+.......++.+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555544444333222 22233333334555677888877776532 24555666677777888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHh--cC--CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 426 LEAKITPSVFTVSSLIHGLFK--NG--RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~~~--~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
.+.+ +..+...+..++.. .| .+.+|.-+|+++..+. .+++.+++.++.++...|++++|.++++++.+
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~-----~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF-----GSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7642 22333444444322 22 5777777777776653 45666777777777777777777777777765
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 036303 502 DNLRPD-NCTYTTMLRGLLRAKRM-LDVMMLLADMIK 536 (605)
Q Consensus 502 ~~~~p~-~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 536 (605)
. .|+ +.++..++-+....|+. +.+.+++.++..
T Consensus 230 ~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 230 K--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp C---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred h--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 3 333 44666666666666766 455566666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-05 Score=72.78 Aligned_cols=456 Identities=14% Similarity=0.142 Sum_probs=247.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHH
Q 036303 79 EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYT 158 (605)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (605)
..|-|+.+|+.|++-+..+ .++++.+.++++... .+..+..|..-+..-.+..+++..+.+|.+.+.. ..+...|.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 3667899999999987766 999999999999876 4557788999999999999999999999999876 34566676
Q ss_pred HHHHHHHh-cCCHHH----HHHHHHHH-HHCCCCCC-cccHHHHHHHH---------hccCChHHHHHHHHHHHhCCCCC
Q 036303 159 ILIHGLCN-ENKMVE----AESMFRSM-RECGVVPN-LYTYNALMDGY---------CKVADVNRALEFYHEMLHHNLQP 222 (605)
Q Consensus 159 ~l~~~~~~-~~~~~~----a~~~~~~~-~~~~~~p~-~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~~~~~ 222 (605)
..+.--.+ .|+... ..+.|+-. .+.|..+- -..|+..+..+ ....+++...++|++++...+.
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~- 169 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH- 169 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc-
Confidence 66653332 333333 22333332 23343332 22354444332 2333455666777777653211
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCChh-----
Q 036303 223 NVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEK--FEISPDVF----- 295 (605)
Q Consensus 223 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~----- 295 (605)
....|=+-|. .++.. .|..+-..++. -+...+..|.++++++.. .|......
T Consensus 170 ---nlEkLW~DY~---~fE~~-------------IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~ 228 (656)
T KOG1914|consen 170 ---NLEKLWKDYE---AFEQE-------------INIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPK 228 (656)
T ss_pred ---cHHHHHHHHH---HHHHH-------------HHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence 1111111110 00100 01111111110 111223333333333321 11100000
Q ss_pred ----------hHHHHHHHHHhcCCH---------HHHHHHHHHHH-HCCCCCCHHH----H-HHHHHHHHhcCC------
Q 036303 296 ----------TYNILIKGLCGVGQL---------EGAEGLLQKMY-KEGILANVVT----Y-NSLIDGYCKEGD------ 344 (605)
Q Consensus 296 ----------~~~~l~~~~~~~~~~---------~~A~~~~~~~~-~~~~~~~~~~----~-~~l~~~~~~~~~------ 344 (605)
.|..+|.- .+.+-. ....-.+++.. -.+..|+... | ....+.+...|+
T Consensus 229 ~T~~e~~qv~~W~n~I~w-EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~ 307 (656)
T KOG1914|consen 229 GTKDEIQQVELWKNWIKW-EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKS 307 (656)
T ss_pred CChHHHHHHHHHHHHHHH-HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchh
Confidence 01111110 000000 00111111111 1111121110 0 001112222232
Q ss_pred -HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 036303 345 -MEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG---NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLR 420 (605)
Q Consensus 345 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 420 (605)
-+++..++++..+.-...+..+|..+...--..- ..+....++.++.......-..+|..+++.-.+..-.+.|..
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 4566666766655422223444444333222222 255556666666654222223456677777777778899999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036303 421 LYKEMLEAKITP-SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDM 499 (605)
Q Consensus 421 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (605)
+|.++.+.+..+ +..+..+++..++ .++.+-|.++|+--+++. ..++..-...+..+...++-..|..+|++.
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-----~d~p~yv~~YldfL~~lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-----GDSPEYVLKYLDFLSHLNDDNNARALFERV 461 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 999999887666 5566666666554 678899999999988875 333444456777788889999999999999
Q ss_pred HhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C--CCccHHHHHHHHHHHHhcCChhHHHHHHH
Q 036303 500 RSDNLRPDN--CTYTTMLRGLLRAKRMLDVMMLLADMIKM-G--IVPDAVINQVMVRGYQENGDLKSAFRCSE 567 (605)
Q Consensus 500 ~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 567 (605)
+..++.|+. .+|..+++--+.-|++..+.++-+++... . ..+....-..+++-|.-.+.+..-..-++
T Consensus 462 l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 462 LTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred HhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 987666654 48999999888999999998887776531 1 22222233345556666666655544333
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.5e-08 Score=85.86 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-Cc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGI-VP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
.+...+.+.|++.+|+..++++++... .| ....+..++.++.+.|++++|..+++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455677889999999999999986421 23 468899999999999999999999999887655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.3e-08 Score=93.16 Aligned_cols=222 Identities=16% Similarity=0.109 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 036303 330 VTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGL 409 (605)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (605)
..-..+...+...|-...|..+++++.- +..++.+|...|+..+|..+..+..+. +|++..|..++...
T Consensus 399 q~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 3445667778888989999998886543 556788899999999999998888874 78888888888877
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCH
Q 036303 410 SKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQI 489 (605)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 489 (605)
....-+++|.++.+..... +-..+.......++++++.+.|+...... +-...+|-....+..+.+++
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-----plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-----PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-----ccchhHHHhccHHHHHHhhh
Confidence 7766777888777665432 22233333445789999999999888764 45577888888888899999
Q ss_pred HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036303 490 LKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (605)
+.|.+.|...+. ..||.. .|+.+..+|.+.|+-.+|...++++++-. ..+..+|....-...+.|.+++|.+.+.+
T Consensus 536 q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999999887 677654 89999999999999999999999998866 44677888888889999999999999999
Q ss_pred HHhcCCCCC
Q 036303 569 LKESRIGSS 577 (605)
Q Consensus 569 ~~~~~~~~~ 577 (605)
+.+......
T Consensus 613 ll~~~~~~~ 621 (777)
T KOG1128|consen 613 LLDLRKKYK 621 (777)
T ss_pred HHHhhhhcc
Confidence 988765544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7e-07 Score=86.24 Aligned_cols=216 Identities=14% Similarity=0.084 Sum_probs=168.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 036303 296 TYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQC 375 (605)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (605)
.-..+...+...|-...|..+++++. .|..++.+|...|+..+|..+..+..++ +|++..|..++....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34566777888899999999888764 3556777888899999999998888874 678888888877776
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 376 KAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALN 455 (605)
Q Consensus 376 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 455 (605)
...-++.|.++.+....+ .-..+.......+++.++.+.|+...+.+ +.-..+|..++.+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 666677888777655432 22223333345788999999999888876 6677888888888899999999999
Q ss_pred HHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 456 FFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
.|...+.-. +.+...|+++-.+|.+.|+-.+|...++++.+.+ .-+...|...+-.....|.+++|++.+.++.
T Consensus 541 aF~rcvtL~-----Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 541 AFHRCVTLE-----PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHhhcC-----CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 999888742 4457789999999999999999999999998866 4455577777777788899999999988887
Q ss_pred H
Q 036303 536 K 536 (605)
Q Consensus 536 ~ 536 (605)
.
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 5
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.6e-06 Score=78.27 Aligned_cols=212 Identities=10% Similarity=0.007 Sum_probs=148.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 036303 55 FSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKG-KFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG 131 (605)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (605)
+..+-..+...++.++|+.+++++ ..|.+..+|+....++...| ++++++..++++.+.++. +..+|+.....+.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~ 118 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHH
Confidence 444445566788889999999887 35556678887777777777 578999999998887544 55667766656666
Q ss_pred cCCh--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc---CCh-
Q 036303 132 QGDV--MKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKV---ADV- 205 (605)
Q Consensus 132 ~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~- 205 (605)
.|+. ++++.+++++++.+ +-+..+|+....++...|+++++++.++++++.++. +..+|+.....+.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 6653 67888888888875 347888888888888889999999999999888766 677777766655443 222
Q ss_pred ---HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 036303 206 ---NRALEFYHEMLHHNLQPNVVTFGVLMDGLCKV----GELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCK 271 (605)
Q Consensus 206 ---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (605)
++.+++..+++... +-+...+..+...+... +...+|...+..+...+ +.+......|+..|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 45667776666653 45667777777776652 33455777776665543 3455666667777664
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.1e-08 Score=78.22 Aligned_cols=114 Identities=10% Similarity=-0.033 Sum_probs=92.9
Q ss_pred HHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 455 NFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLAD 533 (605)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 533 (605)
.++++.+.. .|+. +.....++...|++++|...|+++.. ..| +...|..+..++...|++++|+..+++
T Consensus 14 ~~~~~al~~------~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 14 DILKQLLSV------DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHc------CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445555542 4443 45677788899999999999999987 445 455888888999999999999999999
Q ss_pred HHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCC
Q 036303 534 MIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETE 580 (605)
Q Consensus 534 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 580 (605)
+++ +.| ++..+..++.++...|++++|...++++.+.+|.++...
T Consensus 84 Al~--l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 84 ALM--LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHh--cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 997 445 788999999999999999999999999999999887654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-06 Score=88.21 Aligned_cols=235 Identities=12% Similarity=0.089 Sum_probs=158.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 036303 328 NVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEP-----NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVF 402 (605)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 402 (605)
+...|-..|......++.+.|+++.++++.. +.+ -.-.|.++++.-..-|.-+...++|+++.+.. .....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4456667777777788888888888777664 211 12346666666666677777778888777652 233466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHH
Q 036303 403 TALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQA 482 (605)
Q Consensus 403 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 482 (605)
..|...|.+.+.+++|.++++.|.+.- .....+|..++..+.++++-+.|..++.++++..+. ..+.....-.+..
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk---~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK---QEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch---hhhHHHHHHHHHH
Confidence 777777888888888888888887752 356677888888888888888888888888775321 1133444455556
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHh-cCCh
Q 036303 483 LCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQE-NGDL 559 (605)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~g~~ 559 (605)
-.+.|+.+.+..+|+..+.. .| ....|+.+++.-.+.|+.+.++.+|++++..++.| ....++..--.|.+ .|+-
T Consensus 1610 EFk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 66778888888888887763 33 34478888888888888888888888888877777 44444433334444 3666
Q ss_pred hHHHHHHHHHHh
Q 036303 560 KSAFRCSEFLKE 571 (605)
Q Consensus 560 ~~A~~~~~~~~~ 571 (605)
+.+..+-.++.+
T Consensus 1688 ~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1688 KNVEYVKARAKE 1699 (1710)
T ss_pred hhHHHHHHHHHH
Confidence 666555445443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-06 Score=72.85 Aligned_cols=186 Identities=15% Similarity=0.139 Sum_probs=125.9
Q ss_pred cCCHHHHHHHHHHHhhC---C-CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 036303 342 EGDMEKALSVCSQMTEK---G-VEPNVV-TFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMK 416 (605)
Q Consensus 342 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 416 (605)
..+.++..+++..+... | ..++.. .|..++.+....|+.+.|...+.++..+- +-+...-..-...+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 45678888888777643 3 333433 34455666667788888888888877662 223332222223355678888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 036303 417 ETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLF 496 (605)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (605)
+|.++++.+++.+ |.|..++..-+...-..|+.-+|++-+.+.++.. ..|...|.-+...|...|++++|.-.+
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-----~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-----MNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 8888888888766 5556666666666667777778888888887773 677888888888888888888888888
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 036303 497 SDMRSDNLRPD-NCTYTTMLRGLLRAK---RMLDVMMLLADMIK 536 (605)
Q Consensus 497 ~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 536 (605)
++++- +.|- +..+..+.+.++-.| ++.-|.+++++.++
T Consensus 178 EE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 178 EELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88775 4554 446667777665443 45567777887776
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.8e-06 Score=86.29 Aligned_cols=232 Identities=15% Similarity=0.077 Sum_probs=181.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHH
Q 036303 291 SPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKE-GILA---NVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVT 366 (605)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 366 (605)
|.++..|...|......++.++|.++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+. ......
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445677888888889999999999999998764 2211 1235777777777778888899999999886 224567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 036303 367 FSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKIT-PSVFTVSSLIHGLF 445 (605)
Q Consensus 367 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 445 (605)
|..|...|.+.+.+++|.++++.|.+.- ......|...+..+.+..+-+.|..++.++++.-.. .........+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8889999999999999999999999873 346778888999999999999999999998875311 13445666677778
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC
Q 036303 446 KNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC--TYTTMLRGLLRAKR 523 (605)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~ 523 (605)
+.|+.+.+..+|+..+..+ +.....|+..++.-.++|+.+.+..+|+++.+.++.|-.. .|...+..-...|+
T Consensus 1612 k~GDaeRGRtlfEgll~ay-----PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-----PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-----ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 9999999999999998875 5667889999999999999999999999999988877544 55555555555566
Q ss_pred HHHHHHH
Q 036303 524 MLDVMML 530 (605)
Q Consensus 524 ~~~A~~~ 530 (605)
-..+..+
T Consensus 1687 e~~vE~V 1693 (1710)
T KOG1070|consen 1687 EKNVEYV 1693 (1710)
T ss_pred hhhHHHH
Confidence 5444433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.6e-07 Score=80.12 Aligned_cols=187 Identities=12% Similarity=0.027 Sum_probs=126.5
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC--CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--H
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE--VLPA---IQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADV--V 120 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~ 120 (605)
.+..+..+..++..+.+.|++++|...|+++. .+.+ ..++..++.++.+.|++++|...++++.+..+.... .
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 45677788999999999999999999998772 2222 257788889999999999999999999887443221 2
Q ss_pred hHHHHHHHHHcc--------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 036303 121 TYGVLIDCCCGQ--------GDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTY 192 (605)
Q Consensus 121 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 192 (605)
++..+..++... |++++|.+.++.+....+. +...+..+..... ... ... ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHH
Confidence 455555666554 7788999999998877322 2223322221111 000 000 011
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 193 NALMDGYCKVADVNRALEFYHEMLHHN--LQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKF 253 (605)
Q Consensus 193 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 253 (605)
..+...+.+.|++.+|+..++...... .+.....+..++.++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 245567778888888888888887652 1223457778888888888888888888777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-06 Score=89.34 Aligned_cols=189 Identities=13% Similarity=0.057 Sum_probs=140.8
Q ss_pred hHhhcCCchHH-HHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CC
Q 036303 4 VLANAKLYKNA-RCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EV 80 (605)
Q Consensus 4 ~~~~~~~~~~a-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 80 (605)
+++.-|...+| +.++..+-+-+.+++..+..+..+=+...-....+.++..+..|+......|.+++|..+++.+ ..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~ 116 (694)
T PRK15179 37 ALAEPGESEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF 116 (694)
T ss_pred HhcCcccchhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 33444444444 4455555455555555553333332222222335567889999999999999999999999988 35
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 036303 81 LPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTIL 160 (605)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (605)
|.+..+...++..+.+.+++++|...+++.....+. +......+..++.+.|++++|..+|+++...+ +.+..++..+
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~ 194 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGW 194 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 566788889999999999999999999999987543 67788888899999999999999999999853 3467899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 036303 161 IHGLCNENKMVEAESMFRSMRECGVVPNLYTYNAL 195 (605)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 195 (605)
...+.+.|+.++|...|+...+.- .|....|+.+
T Consensus 195 a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 195 AQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 999999999999999999988762 2334444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.4e-06 Score=72.46 Aligned_cols=155 Identities=12% Similarity=0.101 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036303 368 SSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKN 447 (605)
Q Consensus 368 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (605)
..+...+...|+-+....+........ +.|.......+....+.|++..|...+.+..... ++|..+++.++.+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 333444444454444444444433221 2233333344444555555555555555555443 44555555555555555
Q ss_pred CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036303 448 GRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDV 527 (605)
Q Consensus 448 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 527 (605)
|++++|..-|.+..+-. ..++..++++...+.-.|+.+.|..++......+ .-|..+-..+..+....|++.+|
T Consensus 148 Gr~~~Ar~ay~qAl~L~-----~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 148 GRFDEARRAYRQALELA-----PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred cChhHHHHHHHHHHHhc-----cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHH
Confidence 55555555555554432 2223344445555555555555555555544421 11333444444444455555555
Q ss_pred HHH
Q 036303 528 MML 530 (605)
Q Consensus 528 ~~~ 530 (605)
..+
T Consensus 222 ~~i 224 (257)
T COG5010 222 EDI 224 (257)
T ss_pred Hhh
Confidence 444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-06 Score=73.50 Aligned_cols=156 Identities=12% Similarity=0.129 Sum_probs=109.9
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhH
Q 036303 58 LIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMK 137 (605)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 137 (605)
-+..|...|+++......+....+.. .+...++.+++...+++.++.+ +.+...|..+...|...|++++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 34567888888776555433322111 1123566677777888877765 3477888888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 036303 138 ALNLFDEMIDKGIEPTVVIYTILIHGL-CNENK--MVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHE 214 (605)
Q Consensus 138 a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 214 (605)
|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.++. +..++..+...+...|++++|+..|++
T Consensus 92 A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888875 33677777777754 56666 48888888888887655 667778888888888888888888888
Q ss_pred HHhCCCCCCcch
Q 036303 215 MLHHNLQPNVVT 226 (605)
Q Consensus 215 ~~~~~~~~~~~~ 226 (605)
+++.. +|+..-
T Consensus 170 aL~l~-~~~~~r 180 (198)
T PRK10370 170 VLDLN-SPRVNR 180 (198)
T ss_pred HHhhC-CCCccH
Confidence 88764 444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.6e-06 Score=72.24 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=97.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036303 88 NALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNE 167 (605)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (605)
..+...+...|+-+....+....... .+.|.......+....+.|++..|...+.+..... ++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44555555666666666555554432 23345555556666666777777777777666553 44666677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 036303 168 NKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFF 247 (605)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 247 (605)
|++++|..-|.+..+.-+. +....+.+...+.-.|+++.|..++......+ .-+...-..+.......|+++.|+.+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777666666665332 45556666666666677777766666665543 335555666666666666666666665
Q ss_pred HHH
Q 036303 248 VHM 250 (605)
Q Consensus 248 ~~~ 250 (605)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-06 Score=87.17 Aligned_cols=134 Identities=6% Similarity=-0.086 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-
Q 036303 431 TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC- 509 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~- 509 (605)
+.+...+..|+....+.|.+++|..+++...+.. +.+......++.++.+.+++++|...++++.. ..|+..
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-----Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~ 155 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-----PDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAR 155 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHH
Confidence 3345555555555555555555555555555431 22233444455555555555555555555554 334333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
....+..++.+.|++++|..+|++++.. .+.+..++..++.++...|+.++|...|+++.+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3334444445555555555555555541 1123555555555555555555555555555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.2e-07 Score=71.36 Aligned_cols=90 Identities=11% Similarity=-0.119 Sum_probs=41.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGL 518 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 518 (605)
++..+...|++++|...|+..+... +.+...|..++.++...|++++|+..|+++.+ ..| +...+..+..++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l 102 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-----PWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence 3444444444555544444444432 23344444444445555555555555555544 222 233444444444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 036303 519 LRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~ 536 (605)
...|++++|+..+.++++
T Consensus 103 ~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 445555555555555444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00048 Score=68.98 Aligned_cols=222 Identities=15% Similarity=0.136 Sum_probs=133.1
Q ss_pred HhcCChHHHHHHHHhc-CCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHH
Q 036303 63 SEMGHIEEALWVYRKI-EVLPAIQACNALLN--GLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKAL 139 (605)
Q Consensus 63 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 139 (605)
...+++..|+...+++ ...|+. .|..++. .+.+.|+.++|..+++.....+.. |..+...+-.+|...++.++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 3456777788777776 233443 2333333 345788888888888877665433 7778888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc-CC---------hHHHH
Q 036303 140 NLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKV-AD---------VNRAL 209 (605)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~---------~~~a~ 209 (605)
.+|++.... .|+......+..+|.+.+++.+-.+.--++-+. .+-+...+=++++..... .. ..-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 888888876 566777777777888877766544444344332 222334333444443322 11 12344
Q ss_pred HHHHHHHhCC-CCCCcchHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036303 210 EFYHEMLHHN-LQPNVVTFGVLMDGLCKVGELRAAGNFFV-HMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEK 287 (605)
Q Consensus 210 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 287 (605)
+.++.+++.+ .-.+..-...-.......|++++|..++. ...+.-...+...-+.-+..+...++|.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4555555442 11112222223334456778888888873 333332333444455666777778888888888888777
Q ss_pred CC
Q 036303 288 FE 289 (605)
Q Consensus 288 ~~ 289 (605)
.+
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 65
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.4e-05 Score=70.93 Aligned_cols=119 Identities=14% Similarity=0.067 Sum_probs=70.4
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHH
Q 036303 130 CGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRAL 209 (605)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 209 (605)
...|++++|+..++.++..- |-|+..+......+.+.++.++|.+.++++....+. ....+..+..++.+.|++.+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHH
Confidence 35666666666666665552 334555555556666666666666666666664221 1344455566666666666666
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 210 EFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMA 251 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 251 (605)
.+++...... +.|+..|..|.++|...|+..++.....+..
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 6666665542 4566666666666666666666665555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.1e-05 Score=65.89 Aligned_cols=147 Identities=16% Similarity=0.091 Sum_probs=82.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh---
Q 036303 300 LIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK--- 376 (605)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 376 (605)
-...|+..|++++|++...... +......=+..+.+..+.+-|.+.+++|.+. .+..+.+.|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 3345666666666666655411 2222222233445556666666666666654 144555555555544
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 377 -AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALN 455 (605)
Q Consensus 377 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 455 (605)
.+....|.-+|+++... .+|++.+.+....++...|++++|..+++..+... ..++.++..++.+-...|...++..
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHH
Confidence 23466666666666653 25566666666666666666666666666666654 4456666666655556665554443
Q ss_pred HH
Q 036303 456 FF 457 (605)
Q Consensus 456 ~~ 457 (605)
-+
T Consensus 263 r~ 264 (299)
T KOG3081|consen 263 RN 264 (299)
T ss_pred HH
Confidence 33
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-05 Score=82.95 Aligned_cols=227 Identities=10% Similarity=0.036 Sum_probs=129.7
Q ss_pred HHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 036303 41 ALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI-E-VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVAD 118 (605)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 118 (605)
+..-...++.+..++..|+..+...|++++|..+.+.. . .|.....|..++-.+.+.++++++..+ .+... ...+
T Consensus 20 r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~ 96 (906)
T PRK14720 20 RADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQN 96 (906)
T ss_pred hcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccc
Confidence 33333446678889999999999999999999999866 2 333445555555567777776666555 33322 1112
Q ss_pred H-------------------HhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 119 V-------------------VTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRS 179 (605)
Q Consensus 119 ~-------------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 179 (605)
. ..+..+..+|-+.|+.++|..+++++++.. +-++.+.|.+...|... ++++|.+++.+
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 2 445555666666666666666666666665 33566666666666666 66666666666
Q ss_pred HHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC
Q 036303 180 MRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKF-GVFPN 258 (605)
Q Consensus 180 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 258 (605)
.... +...+++..+.+++.++.... +.+...+. ++.+.+... +...-
T Consensus 175 AV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~----------------~i~~ki~~~~~~~~~ 222 (906)
T PRK14720 175 AIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFL----------------RIERKVLGHREFTRL 222 (906)
T ss_pred HHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHH----------------HHHHHHHhhhccchh
Confidence 5542 333445555555555555432 11222222 222222211 11122
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 036303 259 IFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLC 305 (605)
Q Consensus 259 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (605)
..++..+-..|...++|+++..+++.+.+.. +.|.....-++..|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 3334445556666777777777777777654 234444555555543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.3e-07 Score=72.20 Aligned_cols=105 Identities=14% Similarity=0.028 Sum_probs=84.9
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVR 551 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 551 (605)
+......++..+...|++++|...++++...+ +.+...+..+...+...|++++|...+++.++.. +.+...+..++.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 34556677778888999999999999988732 2355678888888889999999999999888743 336888888999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 552 GYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 552 ~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
+|...|++++|...++++.+.+|++..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhccccch
Confidence 999999999999999999999887654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.4e-06 Score=85.72 Aligned_cols=218 Identities=10% Similarity=0.118 Sum_probs=147.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 036303 292 PDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLI 371 (605)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 371 (605)
.+...+..|+..+...+++++|..+.+...+.. +-....|-.++..+.+.++.+.+..+ .++
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 345677888888889999999999998777653 22333444444466666665555444 223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 372 DGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRIS 451 (605)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 451 (605)
.......++.....++..+... .-+...+..++.+|.+.|+.+++..+|+++++.+ +.+..+++.++..|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 3333334443333333444433 2344578889999999999999999999999988 77899999999999999 999
Q ss_pred HHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH---------------
Q 036303 452 NALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTML--------------- 515 (605)
Q Consensus 452 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~--------------- 515 (605)
+|++++.+++.. +...+++..+.++|+++.. ..|+.. .+..+.
T Consensus 167 KA~~m~~KAV~~-------------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 167 KAITYLKKAIYR-------------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred HHHHHHHHHHHH-------------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHH
Confidence 999999887653 5556788999999999988 445433 222211
Q ss_pred -----HHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHH
Q 036303 516 -----RGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQ 554 (605)
Q Consensus 516 -----~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 554 (605)
..|...++|++++.+++.+++. .| |......++.+|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 2333455677777777777663 33 5556666666665
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.2e-05 Score=63.56 Aligned_cols=191 Identities=16% Similarity=0.143 Sum_probs=141.9
Q ss_pred hcCCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCH
Q 036303 306 GVGQLEGAEGLLQKMYKE---G-ILANVV-TYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNI 380 (605)
Q Consensus 306 ~~~~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 380 (605)
...+.++..+++..+... | ..++.. .|..++-+....|+.+.|...++.+... ++-+..+-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 346788888888887642 3 344543 3445556667889999999999998876 344555544445556678999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036303 381 DAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEK 460 (605)
Q Consensus 381 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (605)
++|+++|+.++..+ +.|..++-.-+-..-..|...+|++-+.+.++. +..|.+.|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999875 556667766666677788888999888888875 4779999999999999999999999999998
Q ss_pred hhccCCCCCCccHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCC
Q 036303 461 TDKTDGGYCSPNHVLYAAIIQALCYDG---QILKASKLFSDMRSDNLRP 506 (605)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p 506 (605)
+-.. |-++..+..+...+.-.| +..-|.++|.+.++ +.|
T Consensus 181 ll~~-----P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~ 222 (289)
T KOG3060|consen 181 LLIQ-----PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNP 222 (289)
T ss_pred HHcC-----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hCh
Confidence 8753 344555556666555443 67789999999987 444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.1e-05 Score=65.17 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=48.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc
Q 036303 410 SKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFK----NGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY 485 (605)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 485 (605)
.+..+.+-|...+++|.+- .+..+++.|..+|.+ .+...+|.-+|+++..+. +|++.+.+..+.++..
T Consensus 148 lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-----~~T~~llnG~Av~~l~ 219 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-----PPTPLLLNGQAVCHLQ 219 (299)
T ss_pred HHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-----CCChHHHccHHHHHHH
Confidence 3444445555555555442 233344444444332 224455555555554442 4555555555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 486 DGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRM 524 (605)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 524 (605)
.|++++|..+++.++... .-++.+...++-.--..|..
T Consensus 220 ~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 220 LGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence 555555555555555432 22344444444333334433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.7e-06 Score=67.07 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGL 518 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (605)
.++..+...|++++|.+.++...... +.+...+..+..++...|++++|..+++++.+.+ +.+...+..+...+
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-----PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 33333444444444444444443321 2233334444444444444444444444443311 11222333344444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 036303 519 LRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~ 536 (605)
...|++++|...+++.++
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.4e-05 Score=70.33 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=111.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc-HHHHHHHHHHHH
Q 036303 406 IDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN-HVLYAAIIQALC 484 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 484 (605)
...+...|+++.|...+..++..- |.|...+......+.+.|+.++|.+.+++++.. .|+ ...+-.+..++.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l------~P~~~~l~~~~a~all 385 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL------DPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCccHHHHHHHHHHH
Confidence 334556788888888888887753 666777777788888889999999999888876 344 566677888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 036303 485 YDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
+.|++.+|+.++++.... .+-|+..|..|.++|...|+..++... .+..|.-.|++++|..
T Consensus 386 ~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A------------------~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 386 KGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLA------------------RAEGYALAGRLEQAII 446 (484)
T ss_pred hcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHH------------------HHHHHHhCCCHHHHHH
Confidence 889999999988888763 344677888888899888887666443 3445677788888888
Q ss_pred HHHHHHhcCCCCCCC
Q 036303 565 CSEFLKESRIGSSET 579 (605)
Q Consensus 565 ~~~~~~~~~~~~~~~ 579 (605)
.+..+.+....+++.
T Consensus 447 ~l~~A~~~~~~~~~~ 461 (484)
T COG4783 447 FLMRASQQVKLGFPD 461 (484)
T ss_pred HHHHHHHhccCCcHH
Confidence 888888776544443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.7e-06 Score=66.41 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=87.9
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCC
Q 036303 446 KNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD--NCTYTTMLRGLLRAKR 523 (605)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 523 (605)
..++...+...++.+....++. +......-.+...+...|++++|...|+.+.+....|+ ......+...+...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s--~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSS--PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4778888888888888765321 12234444566778889999999999999998542222 2245567788889999
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 524 MLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 524 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
+++|+..++.... -...+..+...+++|.+.|++++|+..|+++
T Consensus 101 ~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999999865322 2235667788999999999999999999876
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.6e-07 Score=51.47 Aligned_cols=29 Identities=41% Similarity=0.761 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 151 EPTVVIYTILIHGLCNENKMVEAESMFRS 179 (605)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 179 (605)
.||..+|+.|+.+|++.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.3e-07 Score=51.56 Aligned_cols=34 Identities=53% Similarity=0.770 Sum_probs=30.8
Q ss_pred CCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHH
Q 036303 113 CGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMI 146 (605)
Q Consensus 113 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 146 (605)
+|+.||..+|+.+|.++++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999999873
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0034 Score=63.24 Aligned_cols=191 Identities=14% Similarity=0.033 Sum_probs=125.9
Q ss_pred HHHhcCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHH
Q 036303 61 AFSEMGHIEEALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKA 138 (605)
Q Consensus 61 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 138 (605)
...+.|+.++|..+++... ...+..+...+-.+|...++.++|..+|++..+. .|+..-...+..+|.+.+++.+-
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999998773 3346667777778888999999999999999886 45677778888889998888766
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C---------HHHHHHHHHHHHHCC-CCCCcccHHHHHHHHhccCChHH
Q 036303 139 LNLFDEMIDKGIEPTVVIYTILIHGLCNEN-K---------MVEAESMFRSMRECG-VVPNLYTYNALMDGYCKVADVNR 207 (605)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~ 207 (605)
.++--++-+. .+-....+=+++..+.+.- . ..-|.+.++.+.+.+ .--+..-.......+...|.+++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 5555555543 2334443334444444321 1 234666677776653 11111112223344557788999
Q ss_pred HHHHHHHHH-hCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 208 ALEFYHEML-HHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFG 254 (605)
Q Consensus 208 a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 254 (605)
|++++..-. +.-.+.+...-+.-+..+...+++.+..++..++...+
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 999984433 33222333444456777788899999999988888776
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.3e-06 Score=73.16 Aligned_cols=94 Identities=13% Similarity=0.116 Sum_probs=71.4
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCC
Q 036303 481 QALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGD 558 (605)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 558 (605)
.-+.+.+++.+|+..|.++++ +.| |.+.|..-..+|.+.|.++.|++-.+.++. +.|. ...|..|+.+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 345566788888888888887 555 445666777788888888888888877776 5563 7788888888888888
Q ss_pred hhHHHHHHHHHHhcCCCCCC
Q 036303 559 LKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 559 ~~~A~~~~~~~~~~~~~~~~ 578 (605)
+++|.+.|+++++++|++..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHHHHHhhhccCCCcHH
Confidence 88888888888888887763
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.5e-05 Score=69.69 Aligned_cols=88 Identities=13% Similarity=0.015 Sum_probs=43.6
Q ss_pred HccCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCCh
Q 036303 484 CYDGQILKASKLFSDMRSD---NLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDL 559 (605)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 559 (605)
.+.|++..|.+.+.+.+.. +..|+...|.....+..+.|+..+|+.-.+.+++ +.|. ...+..-+.++...++|
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555541 1222233344444444455555555555555544 3332 44444445555555555
Q ss_pred hHHHHHHHHHHhcC
Q 036303 560 KSAFRCSEFLKESR 573 (605)
Q Consensus 560 ~~A~~~~~~~~~~~ 573 (605)
++|++-++++.+..
T Consensus 338 e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHhhc
Confidence 55555555555543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.8e-06 Score=64.15 Aligned_cols=102 Identities=16% Similarity=0.064 Sum_probs=82.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-c-cHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPD----NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIV-P-DAVINQV 548 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~ 548 (605)
++...+..+...|++++|.+.++++.+. .|+ ...+..+..++...|++++|...+++++..... + ...++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4556777888899999999999999873 343 346667888999999999999999999863211 1 3677889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 549 MVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
++.++.+.|++++|...++++.+..|++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 999999999999999999999999987654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=9e-06 Score=64.26 Aligned_cols=98 Identities=7% Similarity=-0.041 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 036303 474 VLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRG 552 (605)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 552 (605)
...-.+..-+...|++++|.++|+-+.. +.|... .|..|..+|-..|++++|+..+.++.... +.|+..+..++.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344566667789999999999999887 556544 77788888889999999999999999854 2379999999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCC
Q 036303 553 YQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
+...|+.+.|++.|+.+...--
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999988763
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.002 Score=62.79 Aligned_cols=203 Identities=13% Similarity=0.116 Sum_probs=137.1
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh----------cCChhHHHHHHHHHHHCCCCC
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIK----------KGKFDSVWEFYEEMVLCGLVA 117 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~~~~~~~~~ 117 (605)
+++-|..|..++......-.++.|...|-++.+-+.+..-..+-..+.+ -|+|++|.++|-.+-+++
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 4567889999999999999999999999888766666554444333332 378888888887765542
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 036303 118 DVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPT----VVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYN 193 (605)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 193 (605)
..+....+.|+|-...++++.- |...| ..+|+.+...+.....+++|.+.+..-.. ..
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e 826 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TE 826 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hH
Confidence 3356677778887776665432 11212 34788888888888888888888765432 12
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 036303 194 ALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAG 273 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (605)
..+.++.+..++++-..+.+. .+.+....-.+..++.+.|.-++|.+.+-+... |. ..+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHH
Confidence 356666666666665544443 345667777888889999998888877654321 22 2445677778
Q ss_pred CHHHHHHHHHHH
Q 036303 274 NLFEAMSLCSEM 285 (605)
Q Consensus 274 ~~~~a~~~~~~~ 285 (605)
+|.+|.++-+..
T Consensus 893 QW~~avelaq~~ 904 (1189)
T KOG2041|consen 893 QWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHhc
Confidence 888888776654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-05 Score=67.42 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=97.7
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCc-cHHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRA---KRMLDVMMLLADMIKMGIVP-DAVI 545 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~-~~~~ 545 (605)
+.|...|..|..+|...|+.+.|..-|.++.+. -.+++..+..+..++..+ ....++..+++++++ ..| |...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHH
Confidence 677889999999999999999999999999983 234566888888877654 346788999999997 455 7889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCccchhhhhhc
Q 036303 546 NQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTRSFLGH 590 (605)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (605)
...|+..+...|++.+|...|+.+.+..|.+.|+....-..+-..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA 274 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999866555444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0029 Score=57.34 Aligned_cols=257 Identities=14% Similarity=0.131 Sum_probs=153.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 036303 305 CGVGQLEGAEGLLQKMYKEGILANVV--TYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDA 382 (605)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 382 (605)
.-.|+++.|.+-|+.|... |... -...|.-.--+.|+.+.|.++-+..-..- +.-.-.....+...+..|+|+.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 3456777777777776642 1111 11222222345667777776666665542 1233455666777777777777
Q ss_pred HHHHHHHHHHCC-CCCCHhhH--HHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 036303 383 AMGLYTEMVIKS-LVPDVVVF--TALIDGL---SKDGNMKETLRLYKEMLEAKITPSVF-TVSSLIHGLFKNGRISNALN 455 (605)
Q Consensus 383 a~~~~~~~~~~~-~~~~~~~~--~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~ 455 (605)
|+++++.-.... +.++..-- ..|+.+- .-..+...|...-.+..+. .|+.. .-..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 777776555432 22232211 1122111 1123455566655555554 44432 23334567888999999999
Q ss_pred HHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 456 FFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD-NLRPDNC-TYTTMLRGLLRAKRMLDVMMLLAD 533 (605)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 533 (605)
+++.+-+. .|++..+. +..+.+.|+. ++.-++++... .++||.. +...+..+....|++..|..--+.
T Consensus 285 ilE~aWK~------ePHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aea 354 (531)
T COG3898 285 ILETAWKA------EPHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEA 354 (531)
T ss_pred HHHHHHhc------CCChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99998875 56665543 3344456654 33333333221 2566654 667778888889999999888777
Q ss_pred HHHCCCCccHHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCCCCC
Q 036303 534 MIKMGIVPDAVINQVMVRGYQEN-GDLKSAFRCSEFLKESRIGSSETE 580 (605)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~ 580 (605)
..+ ..|...+|..++++-... ||-.+++.++-+..+ .|.++.|.
T Consensus 355 a~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~-APrdPaW~ 399 (531)
T COG3898 355 AAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK-APRDPAWT 399 (531)
T ss_pred Hhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc-CCCCCccc
Confidence 766 678889999999987766 999999999888876 45555443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.1e-05 Score=60.44 Aligned_cols=117 Identities=14% Similarity=0.144 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 036303 377 AGNIDAAMGLYTEMVIKSLVPD--VVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSV--FTVSSLIHGLFKNGRISN 452 (605)
Q Consensus 377 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 452 (605)
.++...+...++.+........ ......+...+...|++++|...|+.+......++. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555421110 112222334455566666666666666654312211 123344555556666666
Q ss_pred HHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036303 453 ALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDM 499 (605)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (605)
|+..++..... ...+..+...+.++...|++++|...|+++
T Consensus 104 Al~~L~~~~~~------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDE------AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCc------chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66665442221 223334445555566666666666665543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.3e-06 Score=57.34 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCC
Q 036303 507 DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENG-DLKSAFRCSEFLKESRI 574 (605)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 574 (605)
++.+|..+...+...|++++|+..|+++++. .| +..++..++.+|...| ++++|++.++++.+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888889999999999999999999984 45 6889999999999999 79999999999999887
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-05 Score=58.14 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=79.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQ 554 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 554 (605)
+..++..+...|++++|...++++.+ ..|+ ...+..+...+...|++++|...+++.++.. +.+..++..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 45667778888999999999999887 3444 4577788888888999999999999988743 235678889999999
Q ss_pred hcCChhHHHHHHHHHHhcCCC
Q 036303 555 ENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 555 ~~g~~~~A~~~~~~~~~~~~~ 575 (605)
..|++++|...++++.+.+|.
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 KLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999887763
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.3e-05 Score=74.07 Aligned_cols=90 Identities=17% Similarity=0.123 Sum_probs=55.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGL 518 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 518 (605)
-+..+...|++++|+..|.+++. . .+.+...|..+..+|...|++++|+..++++++ +.|+ ...|..+..+|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~-~----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID-L----DPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-h----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHH
Confidence 34455566677777777766664 1 122345556666666666777777777766666 3443 34566666666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 036303 519 LRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~ 536 (605)
...|++++|+..++++++
T Consensus 81 ~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 81 MKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 666777777777666665
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.2e-05 Score=70.36 Aligned_cols=122 Identities=14% Similarity=0.120 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036303 369 SLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG 448 (605)
Q Consensus 369 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (605)
.++..+...++++.|+.+++++.+.. |+ ....++..+...++-.+|.+++.+.++.. +.+...+..-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444444455555555555555441 22 22234444444445555555555555432 334444444444455555
Q ss_pred CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036303 449 RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMR 500 (605)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (605)
+++.|+.+.++++... +.+..+|..|..+|...|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-----P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-----PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555555555555431 2223355555555555555555555554443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.3e-05 Score=69.60 Aligned_cols=127 Identities=15% Similarity=0.107 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 036303 330 VTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGL 409 (605)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (605)
.....++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|++++.+.+... +.+...+..-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344566677777899999999999999874 44 44557888888899999999999999763 34666666667778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036303 410 SKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTD 462 (605)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (605)
...++++.|+.+.+++.+.. |.+..+|..|+.+|...|+++.|+..++.+..
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 89999999999999999875 55677999999999999999999998887654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.8e-06 Score=55.92 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 514 MLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 514 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
+...+...|++++|...|+++++.. +-+..++..++.++...|++++|..+++++.+.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4567888999999999999998743 2268899999999999999999999999999999875
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.4e-06 Score=60.36 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=61.5
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHH
Q 036303 486 DGQILKASKLFSDMRSDNL-RPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAF 563 (605)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 563 (605)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|+.++++ .+ ..| +..+...++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5789999999999998322 12445666688999999999999999988 32 233 4566667799999999999999
Q ss_pred HHHHHH
Q 036303 564 RCSEFL 569 (605)
Q Consensus 564 ~~~~~~ 569 (605)
++++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 998864
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00017 Score=71.23 Aligned_cols=141 Identities=12% Similarity=0.054 Sum_probs=95.5
Q ss_pred CCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHhhhccCCCCCCcc-HHHHHHHHHHHHcc--------CCHHHHHHH
Q 036303 430 ITPSVFTVSSLIHGLFK--N---GRISNALNFFLEKTDKTDGGYCSPN-HVLYAAIIQALCYD--------GQILKASKL 495 (605)
Q Consensus 430 ~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~ 495 (605)
.+.+...|..++.+... . +....|+.+|+++++. .|+ ...|..+..++... ++...+.+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 35566666666655432 2 2356777777777775 333 34444433333221 123444555
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 496 FSDMRSDN-LRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 496 ~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
.++..... ...++..|..+.-.....|++++|...++++++ +.|+...|..++.++...|+.++|...++++..++|
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 55544421 233556777777667778999999999999998 457888999999999999999999999999999999
Q ss_pred CCCC
Q 036303 575 GSSE 578 (605)
Q Consensus 575 ~~~~ 578 (605)
..+.
T Consensus 485 ~~pt 488 (517)
T PRK10153 485 GENT 488 (517)
T ss_pred CCch
Confidence 8664
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.5e-05 Score=59.90 Aligned_cols=97 Identities=7% Similarity=0.024 Sum_probs=71.6
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDC 128 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (605)
.-...+.++..+...|++++|..+|+-+ ..+.+...|..|..++-..|++++|+..|......++ .|+..+-.+..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 3345666777777778888888888766 3556677777777777788888888888888777764 367777777777
Q ss_pred HHccCChhHHHHHHHHHHhC
Q 036303 129 CCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~ 148 (605)
+...|+.+.|++.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888887777654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.4e-05 Score=62.16 Aligned_cols=99 Identities=10% Similarity=0.033 Sum_probs=54.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPD--NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
+..++..+...|++++|...|+++.+....+. ...+..+..++.+.|++++|...++++++ ..| +...+..++.+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHH
Confidence 44444445555555555555555554211111 23444555555555555555555555554 223 34444555555
Q ss_pred HHhcCC--------------hhHHHHHHHHHHhcCCCC
Q 036303 553 YQENGD--------------LKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 553 ~~~~g~--------------~~~A~~~~~~~~~~~~~~ 576 (605)
|...|+ +++|.+.++++.+.+|++
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 555554 677888888888888876
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00012 Score=67.02 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=52.0
Q ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-----cH
Q 036303 476 YAAIIQALCYD-GQILKASKLFSDMRSD----NLRPD--NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-----DA 543 (605)
Q Consensus 476 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~ 543 (605)
+..+...|... |++++|++.|+++.+. + .+. ..++..++..+.+.|++++|+++|++........ +.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 33444455555 6666666666665541 2 111 1245555556666666666666666665432211 11
Q ss_pred -HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 544 -VINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 544 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
..+...+-++...||.-.|.+.+++....+|....+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 223334445566666666666666666666655444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0015 Score=52.65 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=80.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC---C
Q 036303 431 TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP---D 507 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~ 507 (605)
.|+...-..|..++.+.|+..+|...|++...-. +..|...+..+.++....+++.+|...++++.+.+ | +
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~----fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~ 159 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGI----FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRS 159 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc----cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCC
Confidence 4555556666777777777777777777766532 35566666667777777777777777777776632 2 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 036303 508 NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
+.+...+.+++...|++..|...|+.++. .-|+...-...+..+.++|+.++|..
T Consensus 160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 160 PDGHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred CCchHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 22444566677777777777777777776 34555555555556677776666554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.3e-05 Score=65.08 Aligned_cols=102 Identities=19% Similarity=0.186 Sum_probs=69.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccC
Q 036303 408 GLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDG 487 (605)
Q Consensus 408 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 487 (605)
-..+.+++.+|+..|.+.++.. +.|...|..-..+|.+.|.++.|++-.+..+... +.-..+|..|..+|...|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-----p~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-----PHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHccC
Confidence 3456677777777777777764 4455555666677777777777777777777632 223556777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036303 488 QILKASKLFSDMRSDNLRPDNCTYTTMLRG 517 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (605)
++++|++.|+++++ +.|+..+|..=+..
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 77777777777776 67777766544443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0019 Score=58.94 Aligned_cols=164 Identities=13% Similarity=0.029 Sum_probs=88.4
Q ss_pred HHHHHHH-HHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH----
Q 036303 330 VTYNSLI-DGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTA---- 404 (605)
Q Consensus 330 ~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---- 404 (605)
.++..+- .++.-.|+.++|...--.+++.+. .+......-..++...++.+.+...|.+.+.. .|+...--.
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMM 245 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhh
Confidence 3444332 344566777777776666666532 13332222233344466777777777777655 233321111
Q ss_pred ---------HHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc
Q 036303 405 ---------LIDGLSKDGNMKETLRLYKEMLEAK---ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN 472 (605)
Q Consensus 405 ---------l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 472 (605)
-.+-..+.|++..|.+.|.+.+..+ +.++...|.....+..+.|+.++|+.-.+++++. .+.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i------D~s 319 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI------DSS 319 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc------CHH
Confidence 1122345677777777777776542 2333444555555666777777777777666652 221
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 036303 473 -HVLYAAIIQALCYDGQILKASKLFSDMRSD 502 (605)
Q Consensus 473 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (605)
...+..-..++...++|++|++-++++.+.
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222333344555666777777777776653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00018 Score=56.32 Aligned_cols=95 Identities=15% Similarity=0.073 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcC--CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHhHHHHH
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKIE--VLP---AIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVA--DVVTYGVLI 126 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 126 (605)
++..++..+.+.|++++|.+.|+++. .+. ...++..++.++.+.|+++.|...|+.+....+.. ...++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555555555555555555555541 111 12344445555555555555555555555432111 123444445
Q ss_pred HHHHccCChhHHHHHHHHHHhC
Q 036303 127 DCCCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 127 ~~~~~~g~~~~a~~~~~~~~~~ 148 (605)
.++.+.|+.++|...++.+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555555555555555555554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0014 Score=60.14 Aligned_cols=126 Identities=12% Similarity=0.099 Sum_probs=56.3
Q ss_pred HHHhc-CCHHHHHHHHHHHHHC----CCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HH-HHHH
Q 036303 373 GQCKA-GNIDAAMGLYTEMVIK----SLVP--DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPS-----VF-TVSS 439 (605)
Q Consensus 373 ~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~-~~~~ 439 (605)
.|... |+++.|++.|.+.... + .+ -...+..+...+.+.|++++|..+|+++.......+ .. .+..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34444 5666666666555432 1 11 112344555556666677777777766655322111 11 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc--cCCHHHHHHHHHHH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY--DGQILKASKLFSDM 499 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 499 (605)
.+-++...|++..|.+.+++.....+.-...........++.++-. ...+..|+.-|+.+
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 2334445566666666666655443222222223344445554432 22344555555444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.6e-05 Score=67.91 Aligned_cols=139 Identities=9% Similarity=0.046 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-CCHH
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC-SPNHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLR-PDNC 509 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~ 509 (605)
.|..|+..|.-.|+++.|+..-+.-+.....-|- .....++..+..+++-.|+++.|.+.|+..... |-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666777788999988766544332111110 223456778889999999999999999886542 211 1233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIK----MG-IVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
+-..|..+|.-..++++|+.++.+-+. .+ ..-....+..|+.+|-..|..++|+.+.+..++...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 445778888888889999998877543 11 122467888999999999999999999888876643
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0037 Score=50.45 Aligned_cols=134 Identities=16% Similarity=0.174 Sum_probs=103.4
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHH
Q 036303 396 VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVL 475 (605)
Q Consensus 396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 475 (605)
-|.+..-..|..+..+.|+..+|...|++....-...|...+..+..+....+++..|...+++..+..+ .+-.||..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p-a~r~pd~~- 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP-AFRSPDGH- 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC-ccCCCCch-
Confidence 4666667778888899999999999999988866677888888888888899999999999998877553 22345443
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADM 534 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (605)
..+.+.+...|++..|+.-|+.+.. ..|+...--.....+.++|+.+++..-+...
T Consensus 164 -Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 -LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred -HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3567788889999999999999988 6677775555666677788777776654443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00023 Score=67.44 Aligned_cols=102 Identities=13% Similarity=0.101 Sum_probs=68.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc
Q 036303 406 IDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY 485 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 485 (605)
.......|++++|+..|+++++.+ +.+...+..++.++...|++++|+..+++++... +.+...|..++.+|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-----P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-----PSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCCHHHHHHHHHHHHH
Confidence 344556677777777777777665 4456667777777777777777777777777653 3455666677777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 036303 486 DGQILKASKLFSDMRSDNLRPDNCTYTTML 515 (605)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 515 (605)
.|++++|+..|+++++ +.|+......++
T Consensus 83 lg~~~eA~~~~~~al~--l~P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGAS--LAPGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 7777777777777776 556555444443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00015 Score=64.69 Aligned_cols=103 Identities=17% Similarity=0.051 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCc-cHHHHH
Q 036303 474 VLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN----CTYTTMLRGLLRAKRMLDVMMLLADMIKM-GIVP-DAVINQ 547 (605)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~ 547 (605)
..|..........|++++|+..|+.+++ ..|+. ..+..+..+|...|++++|...|+++++. ...| ....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 3454444444667999999999999998 45654 46778889999999999999999999853 2222 377788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 548 VMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.++.++...|++++|..+++++.+..|++..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 8899999999999999999999999998663
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00029 Score=59.01 Aligned_cols=103 Identities=11% Similarity=-0.021 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHH
Q 036303 473 HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP--DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVM 549 (605)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l 549 (605)
...|..++..+...|++++|+..|+++......| ...++..+..++...|++++|+..++++++ +.| ....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHH
Confidence 4455666677777788888888888877632222 123677777778888888888888888776 334 35556666
Q ss_pred HHHHH-------hcCChh-------HHHHHHHHHHhcCCCCC
Q 036303 550 VRGYQ-------ENGDLK-------SAFRCSEFLKESRIGSS 577 (605)
Q Consensus 550 ~~~~~-------~~g~~~-------~A~~~~~~~~~~~~~~~ 577 (605)
+.++. +.|+++ +|..+++++...+|++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 66666 777766 66666777777777654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0014 Score=58.16 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=34.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcC--CCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKIE--VLPAI---QACNALLNGLIKKGKFDSVWEFYEEMVLCG 114 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (605)
++..+...+..+.+.|++++|...|+++. .|.+. .+...++.++.+.+++++|...+++..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 44445555555666666666666666551 11111 122345555566666666666666666553
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00017 Score=53.71 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=43.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLL 519 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (605)
++..+...|++++|...+++..... +.+...+..+..++...|++++|.+.+++..... +.+...+..+...+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-----PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 3444444555555555555544432 2222344444555555555555555555554421 112234445555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 036303 520 RAKRMLDVMMLLADMIK 536 (605)
Q Consensus 520 ~~g~~~~A~~~~~~~~~ 536 (605)
..|++++|...+...++
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 55555555555555443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00061 Score=57.26 Aligned_cols=91 Identities=12% Similarity=0.034 Sum_probs=65.3
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE----VLP-AIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTY 122 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 122 (605)
.+.....+..++..+...|++++|...|+++. .++ ....+..++..+.+.|++++|...+++.....+ .+...+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 109 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSAL 109 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHH
Confidence 33455567888888888899999999888762 222 135778888888888889999888888887642 255666
Q ss_pred HHHHHHHHccCChhHHH
Q 036303 123 GVLIDCCCGQGDVMKAL 139 (605)
Q Consensus 123 ~~l~~~~~~~g~~~~a~ 139 (605)
..+..++...|+...+.
T Consensus 110 ~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHHcCChHhHh
Confidence 67777777777654443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.8e-05 Score=54.45 Aligned_cols=47 Identities=23% Similarity=0.521 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 413 GNMKETLRLYKEMLEAKIT-PSVFTVSSLIHGLFKNGRISNALNFFLE 459 (605)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (605)
|+++.|+.+++++.+.... ++...+..++.++.+.|++++|+.++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444443211 1222333344444444444444444444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0012 Score=50.59 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEAKITPS--VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQA 482 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 482 (605)
+..++-..|+.++|+.+|++.+..|.... ...+..+..++...|++++|+.++++.....++..... .....+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~--~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA--ALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH--HHHHHHHHH
Confidence 44455566666666666666666654433 23445556666666666666666666665432111111 111122334
Q ss_pred HHccCCHHHHHHHHHHHH
Q 036303 483 LCYDGQILKASKLFSDMR 500 (605)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~ 500 (605)
+...|+.++|++.+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555666666666665544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00043 Score=63.12 Aligned_cols=128 Identities=11% Similarity=0.084 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHH
Q 036303 402 FTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFK-NGRISNALNFFLEKTDKTDGGYCSPNHVLYAAII 480 (605)
Q Consensus 402 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 480 (605)
|..++....+.+..+.|..+|.+..+.+ ..+..+|...+..-.+ .++.+.|.++|+..++.. +.+...|...+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~~~~~~~Y~ 77 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-HHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCCHHHHHHHH
Confidence 4444444444444555555555554322 2334444444443223 233333555555555442 33444444445
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 481 QALCYDGQILKASKLFSDMRSDNLRPDN---CTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
..+...++.+.|..+|++.+.. +.++. ..|...++--.+.|+++.+..+.+++.+
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555442 21111 1444444444444555554444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0012 Score=57.02 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=46.4
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036303 50 FNPSVFSTLIIAFSEMGHIEEALWVYRKIE-----VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGL 115 (605)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 115 (605)
.++..+...+..+...|++.+|...|+.+. .+-...+...++.++.+.|+++.|...+++.++.-+
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 355667777888888888888888888772 222346677778888888888888888888877633
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0046 Score=54.91 Aligned_cols=178 Identities=9% Similarity=-0.002 Sum_probs=98.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 036303 370 LIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVV---FTALIDGLSKDGNMKETLRLYKEMLEAKITPSVF--TVSSLIHGL 444 (605)
Q Consensus 370 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~ 444 (605)
....+...|++++|.+.|+.+......+ ... ...++.++.+.+++++|...+++.++........ ++..++.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444555677777777777766652221 111 1334555667777777777777776653211111 122222111
Q ss_pred Hhc------------------CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 036303 445 FKN------------------GRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP 506 (605)
Q Consensus 445 ~~~------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (605)
... ....+|+..|++.++..+ .+.-..+|...+..+.+. .
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP-------------------~S~ya~~A~~rl~~l~~~---l 174 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP-------------------NSQYTTDATKRLVFLKDR---L 174 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc-------------------CChhHHHHHHHHHHHHHH---H
Confidence 111 112345566666666542 222234444444444320 0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 507 DNCTYTTMLRGLLRAKRMLDVMMLLADMIK-MGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
-... ..+..-|.+.|.+..|+.-++.+++ ..-.| ..+.+..++.+|.+.|..++|..+...+..
T Consensus 175 a~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 175 AKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 1111 2455667888889889888888885 22222 477788888999999999999888776643
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.8e-05 Score=44.40 Aligned_cols=31 Identities=42% Similarity=0.826 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 036303 157 YTILIHGLCNENKMVEAESMFRSMRECGVVP 187 (605)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 187 (605)
|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3444444444444444444444444444333
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0017 Score=64.40 Aligned_cols=139 Identities=7% Similarity=0.017 Sum_probs=83.4
Q ss_pred CCCHhhHHHHHHHHH--hc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHhhh
Q 036303 396 VPDVVVFTALIDGLS--KD---GNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKN--------GRISNALNFFLEKTD 462 (605)
Q Consensus 396 ~~~~~~~~~l~~~~~--~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~ 462 (605)
+.+...|...+++.. .. ++...|..+|++.++.+ |.....+..+..++... .+...+.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 445555555555532 22 22556666777776654 33334444433333211 122333343333322
Q ss_pred ccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 036303 463 KTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD 542 (605)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 542 (605)
... .+.++..+..+.......|++++|...++++.+ +.|+...|..+...+...|+.++|...++++.. +.|.
T Consensus 413 l~~---~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 413 LPE---LNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred ccc---CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 110 133456666666666677899999999999888 557777888888888889999999999988887 4454
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.03 Score=52.11 Aligned_cols=146 Identities=14% Similarity=0.194 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036303 365 VTFSSLIDGQCKAGNIDAAMGLYTEMVIKS-LVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHG 443 (605)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (605)
.+|...+..-.+..-.+.|..+|.++.+.+ +.+++..+++++..++ .|+...|..+|+.-+..- +.+..-....+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 345556666666777888888888888887 4567777777777554 477888888888766542 3333334455666
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036303 444 LFKNGRISNALNFFLEKTDKTDGGYCSPN--HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLL 519 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (605)
+...++-+.|..+|+..+.+. ..+ ...|..++..-..-|+...+..+-+++.+ ..|...+......-|.
T Consensus 476 Li~inde~naraLFetsv~r~-----~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVERL-----EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHH-----HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 777888888888888776653 222 45677888877888888888888888877 5566555444444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.7e-05 Score=44.00 Aligned_cols=33 Identities=48% Similarity=0.984 Sum_probs=26.3
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC
Q 036303 191 TYNALMDGYCKVADVNRALEFYHEMLHHNLQPN 223 (605)
Q Consensus 191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 223 (605)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677888888888888888888888887777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.5e-05 Score=51.70 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=48.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 515 LRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
...|.+.+++++|.+.+++++.. .| ++..+...+.++.+.|++++|.+.++++.+.+|++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 34677788888888888888873 44 577778888888888888888888888888888544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00064 Score=62.00 Aligned_cols=145 Identities=12% Similarity=0.101 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036303 365 VTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSK-DGNMKETLRLYKEMLEAKITPSVFTVSSLIHG 443 (605)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (605)
.+|..++....+.+..+.|..+|.++.+.+ ..+...|...+..-.. .++.+.|..+|+..++. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467888899999999999999999998553 3345566655555333 56777799999999986 47788889999999
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCcc---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 444 LFKNGRISNALNFFLEKTDKTDGGYCSPN---HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGL 518 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (605)
+.+.|+.+.|..+|++.+... .++ ...|...+..-.+.|+.+.+.++.+++.+ ..|+...+..+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence 999999999999999999863 333 35899999999999999999999999998 556655555555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00067 Score=56.79 Aligned_cols=97 Identities=12% Similarity=-0.036 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHH
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYT 512 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 512 (605)
...+..++..+...|++++|+..|++++..... ......++..+..++...|++++|++.++++.+ +.|+ ..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~ 110 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID--PYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALN 110 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHH
Confidence 344556666667777777777777777654211 011234667777777788888888888887776 3443 33555
Q ss_pred HHHHHHH-------hcCCHHHHHHHHHHH
Q 036303 513 TMLRGLL-------RAKRMLDVMMLLADM 534 (605)
Q Consensus 513 ~l~~~~~-------~~g~~~~A~~~~~~~ 534 (605)
.+...+. ..|++++|...+++.
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 5555555 667777555555443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.4e-05 Score=43.04 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 157 YTILIHGLCNENKMVEAESMFRSMRECGV 185 (605)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 185 (605)
|+.++.+|.+.|+++.|.++|+.|.+.|+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33333333333333333333333333333
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.043 Score=51.25 Aligned_cols=119 Identities=18% Similarity=0.107 Sum_probs=73.8
Q ss_pred HHhcCC-HHHHHHHHHHhhhccCCCCCCccHHHHHHHH----HHHHcc---CCHHHHHHHHHHHHhCCCCCC----HHHH
Q 036303 444 LFKNGR-ISNALNFFLEKTDKTDGGYCSPNHVLYAAII----QALCYD---GQILKASKLFSDMRSDNLRPD----NCTY 511 (605)
Q Consensus 444 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~~A~~~~~~~~~~~~~p~----~~~~ 511 (605)
+.+.|. -+.|+++++.++.-. +-|...-+.+. .+|.+. ..+.+-.++-+-+.+.|+.|- ...-
T Consensus 389 lW~~g~~dekalnLLk~il~ft-----~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eia 463 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-----NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIA 463 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence 455565 777888888887742 23333332222 122211 123333344344445677663 2334
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 512 TTMLRG--LLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 512 ~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
+-|.+| +...|++.++.-.-.-..+ +.|++.+|+.++-++....++++|..++..+
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 444443 4578999998776665555 7889999999999999999999998877665
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00083 Score=63.66 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=83.4
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 036303 188 NLYTYNALMDGYCKVADVNRALEFYHEMLHH--NLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCL 265 (605)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 265 (605)
+......++..+....+++.+..++.+.... ....-..|...+++.|...|..+.+..+++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 5555666666666667777777777777655 22223455567778888888888888888777777888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 036303 266 IDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGV 307 (605)
Q Consensus 266 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (605)
+..+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888877776666555555655555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.012 Score=50.40 Aligned_cols=138 Identities=13% Similarity=0.137 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA-----KITPSVFTVSSL 440 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l 440 (605)
..+.++.++.-.|.+.-...++.++++...+.++.....+++.-.+.||.+.|...|+...+. ++.....+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344556666666777777777777777765667777777777777788888888877765443 223333344444
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 036303 441 IHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCT 510 (605)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 510 (605)
...+.-++++.+|...+.++.... +.++...|.-.-+..-.|+..+|++.++.|.. ..|.+.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-----~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-----PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-----CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccch
Confidence 455666778888888888887764 44555555555556667888889999988887 4555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00023 Score=48.27 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=21.6
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 482 ALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
.+...|++++|++.|+++++ ..|+ ...+..+..++...|++++|...+++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444 2232 2244444444444444444444444444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.069 Score=52.64 Aligned_cols=204 Identities=11% Similarity=0.060 Sum_probs=104.4
Q ss_pred CCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHH----------HHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 116 VADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILI----------HGLCNENKMVEAESMFRSMRECGV 185 (605)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~a~~~~~~~~~~~~ 185 (605)
.|.+..|..+.......-.++.|+..|-+.... +.......|- ..-.--|++++|.+++-++-.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 355666766666666555666666665554332 1111111111 11122366777777766655432
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 036303 186 VPNLYTYNALMDGYCKVADVNRALEFYHEMLHH-NLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNC 264 (605)
Q Consensus 186 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 264 (605)
..+..+.+.|++-.+.++++.--.. ....-...+..+...++....++.|.+.+...... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 2345566667776666665431110 00112345666666677767777777766554321 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036303 265 LIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGD 344 (605)
Q Consensus 265 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (605)
.+.++.+..++++-..+...+ +-+....-.+..++.+.|.-++|.+.+-+. +. | ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHH
Confidence 455555555555554444433 334455556666777777776666554332 11 1 123445556666
Q ss_pred HHHHHHHHHH
Q 036303 345 MEKALSVCSQ 354 (605)
Q Consensus 345 ~~~a~~~~~~ 354 (605)
|.+|.++-++
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 6666665443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.68 E-value=9.2e-05 Score=42.37 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=18.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRP 506 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (605)
+|+.++.+|.+.|+++.|.++|+.|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00097 Score=63.19 Aligned_cols=122 Identities=13% Similarity=0.155 Sum_probs=82.0
Q ss_pred CCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 036303 116 VADVVTYGVLIDCCCGQGDVMKALNLFDEMIDK--GIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYN 193 (605)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 193 (605)
+.+......+++.+....+++.+..++-+.... ....-..+..++++.|.+.|..+.++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 335556666667676667777777777776654 122223455677777777777777777777777777777777777
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 036303 194 ALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKV 237 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (605)
.++..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777776665555555555555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00059 Score=50.01 Aligned_cols=75 Identities=20% Similarity=0.414 Sum_probs=39.9
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 036303 126 IDCCCGQGDVMKALNLFDEMIDKGI-EPTVVIYTILIHGLCNEN--------KMVEAESMFRSMRECGVVPNLYTYNALM 196 (605)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 196 (605)
|..+...+++...-.+|+.+++.|+ -|++.+|+.++....+.. ++-+.+.++++|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333444555555555555555555 455555555555444321 2334555666666666666666666666
Q ss_pred HHHh
Q 036303 197 DGYC 200 (605)
Q Consensus 197 ~~~~ 200 (605)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0042 Score=47.65 Aligned_cols=92 Identities=25% Similarity=0.272 Sum_probs=57.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHH
Q 036303 370 LIDGQCKAGNIDAAMGLYTEMVIKSLVPD--VVVFTALIDGLSKDGNMKETLRLYKEMLEAKITP---SVFTVSSLIHGL 444 (605)
Q Consensus 370 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 444 (605)
+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++..... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 44556667777777777777777665433 2345556666777777777777777776642 11 222233334456
Q ss_pred HhcCCHHHHHHHHHHhhh
Q 036303 445 FKNGRISNALNFFLEKTD 462 (605)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~ 462 (605)
...|+.++|++.+-..+.
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 677777777777766543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0041 Score=54.89 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCC
Q 036303 431 TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDG---QILKASKLFSDMRSDNLRPD 507 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~ 507 (605)
|.|...|..|+..|...|+.+.|..-|.+..+.. ++++..+..+..++..+. ...++..+|++++. ..|+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~ 225 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-----GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPA 225 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCc
Confidence 5566666666666666666666666666666643 344555555555544322 34667777777776 3444
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 508 NC-TYTTMLRGLLRAKRMLDVMMLLADMIKM 537 (605)
Q Consensus 508 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 537 (605)
.. ....|...+...|++.+|...|+.|++.
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 33 5555555666777777777777777753
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00033 Score=48.24 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=28.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN-CTYTTMLRGLLRAK-RMLDVMMLLADMIK 536 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 536 (605)
.|..++..+...|++++|+..|+++++ +.|+. ..|..+..++...| ++++|++.+++.++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444444455555555555555444 23332 24444444444444 35555555554443
|
... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00068 Score=58.86 Aligned_cols=102 Identities=17% Similarity=0.194 Sum_probs=83.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCc-cHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN----CTYTTMLRGLLRAKRMLDVMMLLADMIK-MGIVP-DAVINQV 548 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~~~ 548 (605)
.|+.-+ .+...|++..|...|...++. .|+. ..+-.|..+++..|++++|..+|..+.+ .+-.| -++.+..
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 465544 456788899999999999983 3432 2455789999999999999999999985 33334 3789999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 549 MVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
|+.+..+.|+.++|..+|+.+.+..|+.+.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 9999999999999999999999999997765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00027 Score=48.49 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 473 HVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
...+..++.+|.+.|++++|.++++++..
T Consensus 25 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 25 PEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333444444444444444444444443
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0012 Score=60.10 Aligned_cols=285 Identities=15% Similarity=0.085 Sum_probs=152.8
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHH--HC--CC-CCCcccHHHHHH
Q 036303 127 DCCCGQGDVMKALNLFDEMIDKGIEPTV----VIYTILIHGLCNENKMVEAESMFRSMR--EC--GV-VPNLYTYNALMD 197 (605)
Q Consensus 127 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~--~~-~p~~~~~~~l~~ 197 (605)
.-+++.|+......+|+..++.|.+ |. .+|..|..+|...+++++|+++...=+ .. |- .-...+-..|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3467888888888888888887643 43 356667777777777888877654311 11 10 012223334555
Q ss_pred HHhccCChHHHHHHHHHHHh----CCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 036303 198 GYCKVADVNRALEFYHEMLH----HNL-QPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKA 272 (605)
Q Consensus 198 ~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (605)
.+--.|.+++|+-...+-+. .|- ......+..+...|...|..-....- .+.|-.+.. + .
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f~~e-v----------~ 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAFNAE-V----------T 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccccHH-H----------H
Confidence 55555666666654433221 110 11233444455555444321100000 000000000 0 0
Q ss_pred CCHHHHHHHHHHH----HhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhc
Q 036303 273 GNLFEAMSLCSEM----EKFEI-SPDVFTYNILIKGLCGVGQLEGAEGLLQKMY----KEGIL-ANVVTYNSLIDGYCKE 342 (605)
Q Consensus 273 ~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~ 342 (605)
..++.|.+.|.+= .+.|- -..-..|..+...|.-.|+++.|+...+.=. +-|-. .....+..+..++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 0123333333321 11110 0122456666777777888888886654322 22211 1234567778888888
Q ss_pred CCHHHHHHHHHHHhhC----CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhc
Q 036303 343 GDMEKALSVCSQMTEK----GV-EPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK-----SLVPDVVVFTALIDGLSKD 412 (605)
Q Consensus 343 ~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 412 (605)
|+++.|.+.|+..... |- .....+...|...|.-..+++.|+.++.+-+.. ...-....+.+|..++...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 8888888888765432 21 122344556777777778888888877654422 1122456777888888888
Q ss_pred CCHHHHHHHHHHHHH
Q 036303 413 GNMKETLRLYKEMLE 427 (605)
Q Consensus 413 g~~~~a~~~~~~~~~ 427 (605)
|..+.|+.+.+..++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888887776554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00032 Score=48.12 Aligned_cols=52 Identities=21% Similarity=0.352 Sum_probs=28.1
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 036303 96 KKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 148 (605)
+.|++++|+++|+++....+. +...+..++.+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455555555555555554322 4555555555555555555555555555554
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0017 Score=47.69 Aligned_cols=79 Identities=13% Similarity=0.364 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHccC--------ChhHHHHHHHHHHhCCCCCCHHHHH
Q 036303 88 NALLNGLIKKGKFDSVWEFYEEMVLCGL-VADVVTYGVLIDCCCGQG--------DVMKALNLFDEMIDKGIEPTVVIYT 158 (605)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (605)
...+..+...+++...-.+|+.+.+.|+ -|+..+|+.++...++.. .+-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666888899999999998888 788899999888776542 3446788899999989999999999
Q ss_pred HHHHHHHh
Q 036303 159 ILIHGLCN 166 (605)
Q Consensus 159 ~l~~~~~~ 166 (605)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98887664
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0017 Score=51.96 Aligned_cols=94 Identities=15% Similarity=0.066 Sum_probs=77.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG 131 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (605)
..+..+.-+...|++++|..+|+-+ -.+.+...|..|..++...+++++|+..|......++ .|+..+-....++..
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~ 117 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHH
Confidence 4567777788889999999999876 4667778888888888899999999999988877654 366677778889999
Q ss_pred cCChhHHHHHHHHHHhC
Q 036303 132 QGDVMKALNLFDEMIDK 148 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~ 148 (605)
.|+.+.|+..|+.....
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 99999999999988874
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.033 Score=51.91 Aligned_cols=180 Identities=16% Similarity=0.122 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036303 367 FSSLIDGQCKAGNIDAAMGLYTEMVIKS---LVPDVVVFTALIDGLSK---DGNMKETLRLYKEMLEAKITPSVFTVSSL 440 (605)
Q Consensus 367 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 440 (605)
...++-+|....+++..+++.+.+.... +...+..-...+.++.+ .|+.++|..++..++.....++++++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3344445666677777777776666541 11122222233444445 66777777777665554446666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHH
Q 036303 441 IHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCT---YTTMLRG 517 (605)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~ 517 (605)
+..|-.. |.+.. ..+ ....++|+..|.+.-+ +.|+... +..|+..
T Consensus 224 GRIyKD~---------~~~s~--------~~d-------------~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~ 271 (374)
T PF13281_consen 224 GRIYKDL---------FLESN--------FTD-------------RESLDKAIEWYRKGFE--IEPDYYSGINAATLLML 271 (374)
T ss_pred HHHHHHH---------HHHcC--------ccc-------------hHHHHHHHHHHHHHHc--CCccccchHHHHHHHHH
Confidence 6555321 11100 001 1125677777777665 4454332 2222222
Q ss_pred HHhc-CCHHHHHHHH---HHHH-HCCC-C--ccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 518 LLRA-KRMLDVMMLL---ADMI-KMGI-V--PDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 518 ~~~~-g~~~~A~~~~---~~~~-~~~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.... ..-.+..++. ..++ +.|. . .+-..+..++.+..-.|++++|.++++++.+..|+...
T Consensus 272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 2111 0111222222 1111 2332 2 24455567788888888888888888888888765443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.14 Score=49.96 Aligned_cols=187 Identities=10% Similarity=0.064 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 036303 329 VVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDG 408 (605)
Q Consensus 329 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 408 (605)
..+|...+.--...|+.+.+.-+|++..-- +..-...|...+.-....|+.+-|..++....+-..+..+.+-..-...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 345666666667777777777777766542 1112334444444444557777776666555443322222211111112
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHhhhccCCCCCCccHH--HHHHHHH-H
Q 036303 409 LSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNAL---NFFLEKTDKTDGGYCSPNHV--LYAAIIQ-A 482 (605)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~--~~~~l~~-~ 482 (605)
....|++..|..+++.+.+.- +.-..+-..-+....+.|..+.+. .++........ .+... .+....+ .
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~----~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE----NNGILEKLYVKFARLR 450 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc----CcchhHHHHHHHHHHH
Confidence 344577888888888777653 222223333334455666766666 33333332211 11111 1111111 1
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036303 483 LCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAK 522 (605)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (605)
+.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 23456778888888888762 3444556777777665444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0037 Score=55.87 Aligned_cols=89 Identities=9% Similarity=0.084 Sum_probs=44.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc
Q 036303 410 SKDGNMKETLRLYKEMLEAKITPS---VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD 486 (605)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 486 (605)
.+.|++++|...|+.+++.. |.+ ..++..++.+|...|++++|+..|..+++.++.+. ....++..++.++...
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~--~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP--KAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc--chhHHHHHHHHHHHHc
Confidence 44455666666666555542 111 23445555555555666666666655555443221 1122333344445555
Q ss_pred CCHHHHHHHHHHHHh
Q 036303 487 GQILKASKLFSDMRS 501 (605)
Q Consensus 487 g~~~~A~~~~~~~~~ 501 (605)
|+.++|.++|+++++
T Consensus 231 g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 231 GDTAKAKAVYQQVIK 245 (263)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555666666555555
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.12 Score=48.34 Aligned_cols=450 Identities=15% Similarity=0.148 Sum_probs=214.5
Q ss_pred HHhcCChHHHHHHHHhcC----CCCC---HH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH--HHHc
Q 036303 62 FSEMGHIEEALWVYRKIE----VLPA---IQ-ACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLID--CCCG 131 (605)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~----~~~~---~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~ 131 (605)
+.+++++.+|.++|.++- ..|. .+ .-+.++.+|... +.+.....+..+.+.. | ...|..+.. .+.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 567888888888887762 1111 11 223455555443 4555555554444432 1 222333332 2346
Q ss_pred cCChhHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCcccHH
Q 036303 132 QGDVMKALNLFDEMIDK--GIEP------------TVVIYTILIHGLCNENKMVEAESMFRSMRECG----VVPNLYTYN 193 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~ 193 (605)
.+++.+|.+.+....++ +..+ |...=+..+.++...|++.+++.+++++...= ..-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78888888887776654 2221 11122455667778888888888887776542 224666777
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 036303 194 ALMDGYCKVADVNRALEFYHEMLHHN-LQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKA 272 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (605)
.++-.+.++ +|-++.+.. ...-+. |..++..|-+.= ..++...=..+.|.......++....-.
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd-yYemilfY~kki------~~~d~~~Y~k~~peeeL~s~imqhlfi~ 236 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD-YYEMILFYLKKI------HAFDQRPYEKFIPEEELFSTIMQHLFIV 236 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH-HHHHHHHHHHHH------HHHhhchHHhhCcHHHHHHHHHHHHHhC
Confidence 655444332 233332210 011111 222222222110 0000000001122222222232222111
Q ss_pred --CCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCH
Q 036303 273 --GNLFEAMSLCSEMEKFEISPDVF-TYNILIKGLCGVGQLEGAEGLLQKMYKEGIL----ANVVTYNSLIDGYCKEGDM 345 (605)
Q Consensus 273 --~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 345 (605)
.+..--+++++.....-+.|+.. +...+...+.. +.+++..+.+.+....+. .-..++..++....+.++.
T Consensus 237 p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T 314 (549)
T PF07079_consen 237 PKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQT 314 (549)
T ss_pred CHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11122223333333333334422 22223333322 444444444443332111 0123566666666777777
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHH-------HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHh-hHHHHH---HHHH
Q 036303 346 EKALSVCSQMTEKGVEPNVVTFS-------SLIDGQCK----AGNIDAAMGLYTEMVIKSLVPDVV-VFTALI---DGLS 410 (605)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~---~~~~ 410 (605)
..|...+.-+...+ |+...-. .+-+..+. .-+...-+.+|+.....++ |.. .-..++ .-+-
T Consensus 315 ~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 315 EEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLW 390 (549)
T ss_pred HHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHH
Confidence 77777776665542 2222111 11111111 1123333455555554432 221 112222 2244
Q ss_pred hcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhc---CCHHHHHHHHHHhhhccCCCCCCc----cHHHHHH
Q 036303 411 KDGN-MKETLRLYKEMLEAKITPSVFTVSSLIH----GLFKN---GRISNALNFFLEKTDKTDGGYCSP----NHVLYAA 478 (605)
Q Consensus 411 ~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~ 478 (605)
+.|. -++|+++++.+++-. +-|...-+.+.. +|.+. ..+.+-+.+ +..+... |++| +...-|.
T Consensus 391 ~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkL-e~fi~e~---gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKL-EDFITEV---GLTPITISEEEIANF 465 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHhc---CCCcccccHHHHHHH
Confidence 5555 788899998888753 334444333322 12111 112222211 1122211 2232 2333444
Q ss_pred HHHH--HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHH
Q 036303 479 IIQA--LCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQV 548 (605)
Q Consensus 479 l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 548 (605)
+..+ +..+|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..+++.
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 5444 5578999999888877777 889999999998888899999999998763 5666666554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00033 Score=38.95 Aligned_cols=27 Identities=48% Similarity=0.955 Sum_probs=11.9
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHh
Q 036303 191 TYNALMDGYCKVADVNRALEFYHEMLH 217 (605)
Q Consensus 191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (605)
+|+.++++|++.|++++|.++|++|.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 344444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0003 Score=39.12 Aligned_cols=29 Identities=41% Similarity=0.702 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 156 IYTILIHGLCNENKMVEAESMFRSMRECG 184 (605)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (605)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.027 Score=48.66 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 036303 84 IQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVA--DVVTYGVLIDCCCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 148 (605)
.......+..+...|++.+|+..|+.+....+.. -......++.++.+.|+++.|...++..++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566667778888888888888887663321 2235566677777888888888888887776
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.09 Score=45.38 Aligned_cols=133 Identities=13% Similarity=0.090 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh-----HHHH
Q 036303 331 TYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVV-----FTAL 405 (605)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l 405 (605)
..+.++..+.-.+.+.-...++.++++...+.++.....+++.-.+.|+.+.|...|++..+..-..+... ....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34555666666777777777777777776666777777777777788888888888776665422223222 2233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcc
Q 036303 406 IDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKT 464 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (605)
...|...+++..|...+.++...+ +.++...+.-.-+..-.|+..+|++..+.+....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344566778888888888888765 4455555555555666788889999998888764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0034 Score=50.23 Aligned_cols=92 Identities=13% Similarity=-0.011 Sum_probs=65.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 036303 478 AIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENG 557 (605)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 557 (605)
....-+...|++++|..+|+-+...+. -+...|..|..+|-..+++++|+..+..+...+ ..|+......+.+|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 334445677888888888887766321 244456667667777788888888888776544 236666777888888888
Q ss_pred ChhHHHHHHHHHHh
Q 036303 558 DLKSAFRCSEFLKE 571 (605)
Q Consensus 558 ~~~~A~~~~~~~~~ 571 (605)
+.+.|+..|+.+.+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 88888888888877
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.012 Score=47.79 Aligned_cols=67 Identities=21% Similarity=0.327 Sum_probs=36.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCccHHH
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMI-----KMGIVPDAVI 545 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 545 (605)
..++..+...|++++|+.+.+++.. ..|. ...|..++.+|...|+..+|.+.|+++. +.|+.|++.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555566677777777766666 3443 3366666677777777777776666653 2466665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.01 Score=54.66 Aligned_cols=99 Identities=6% Similarity=-0.079 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 474 VLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
.++.++..++.+.+++.+|++...+.++.+ ++|...+-.-..+|...|+++.|+..|+++++ +.| |..+-..++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 456678888999999999999999999842 33455777888899999999999999999998 667 56666777776
Q ss_pred HHhcCChhHH-HHHHHHHHhcCCC
Q 036303 553 YQENGDLKSA-FRCSEFLKESRIG 575 (605)
Q Consensus 553 ~~~~g~~~~A-~~~~~~~~~~~~~ 575 (605)
-.+..++.+. .+.|..|...-+.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Confidence 6666665555 6688888876543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.12 Score=44.91 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=53.5
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 036303 49 KFNPSVFSTLIIAFSEMGHIEEALWVYRKIE-----VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYG 123 (605)
Q Consensus 49 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (605)
..++..+..-+..-.+.|++++|.+.|+.+. .+-...+...++.++.+.++++.|+..+++..+.-+......|-
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 3456667777777777888888888888772 22234566667777778888888888888877764443333444
Q ss_pred HHHHHHH
Q 036303 124 VLIDCCC 130 (605)
Q Consensus 124 ~l~~~~~ 130 (605)
..+.+++
T Consensus 111 ~YlkgLs 117 (254)
T COG4105 111 YYLKGLS 117 (254)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0017 Score=46.03 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIKM----GIV-PD-AVINQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
++..+..+|...|++++|+..++++++. |-. |+ ..++..++.+|...|++++|+.+++++.+.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6777777888888888888888877642 211 22 567778888888888888888888887653
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.11 Score=50.86 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCccchhhhhhccccccccccccccC
Q 036303 559 LKSAFRCSEFLKESRIGSSETEGHTTRSFLGHLKPTVYKEQDLSIC 604 (605)
Q Consensus 559 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (605)
+.-++-.+++++.+.|+........+.-+-.+..+--.++++.-||
T Consensus 891 ~~l~~~~~d~l~~l~~pa~~q~~i~l~~l~~~a~~~~~~~~~~~l~ 936 (1081)
T KOG1538|consen 891 YRLARHAYDKLRGLYIPARFQKSIELGTLTIRAKPFHDSEELVPLC 936 (1081)
T ss_pred hhHHHHHhhhhhccCCccchhhhcccccceeccccCCCCccccccc
Confidence 3456667888888887766555555555444555556666655554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.013 Score=53.84 Aligned_cols=136 Identities=15% Similarity=0.103 Sum_probs=95.9
Q ss_pred hHhhcCCchHHHHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCC
Q 036303 4 VLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVL 81 (605)
Q Consensus 4 ~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 81 (605)
.++..|+|..|..-|+..+..+......+..-.....++ -...+..++-++.+.+++..|+...+++ ..+
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~--------k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEAL--------KLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHH--------HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 678899999999999998876554444433222333332 2235677888899999999999988887 467
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCh-hHHHHHHHHHHhC
Q 036303 82 PAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDV-MKALNLFDEMIDK 148 (605)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 148 (605)
+|+.+...-..++...|+++.|+..|+.+++..+. |-.+-..++.+-.+..+. ++..++|..|...
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888889999999999999999999999886422 445555555555444433 3446777777553
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.2 Score=46.85 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 036303 330 VTYNSLIDGYCKEGDMEKALSVCSQMTEKG---VEPNVVTFSSLIDGQCK---AGNIDAAMGLYTEMVIKSLVPDVVVFT 403 (605)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 403 (605)
.+...++-+|....+++..+++.+.+...- +......-...+-++.+ .|+.++|+.++..+......+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344455667999999999999999998761 11122223344555666 899999999999977666677888887
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHH
Q 036303 404 ALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQAL 483 (605)
Q Consensus 404 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 483 (605)
.++..|-.. | .+.+ ..+... .++|+..|.+.-.. .|+..+=-+++..+
T Consensus 222 L~GRIyKD~---------~---~~s~-~~d~~~-------------ldkAi~~Y~kgFe~------~~~~Y~GIN~AtLL 269 (374)
T PF13281_consen 222 LLGRIYKDL---------F---LESN-FTDRES-------------LDKAIEWYRKGFEI------EPDYYSGINAATLL 269 (374)
T ss_pred HHHHHHHHH---------H---HHcC-ccchHH-------------HHHHHHHHHHHHcC------CccccchHHHHHHH
Confidence 776655321 1 1111 112111 56666666665543 22221111111122
Q ss_pred HccCC----HHHHHHHH----HHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 484 CYDGQ----ILKASKLF----SDMRSDN---LRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKM 537 (605)
Q Consensus 484 ~~~g~----~~~A~~~~----~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 537 (605)
...|. -.+..++- ..+.+.| -..+...+..++.++.-.|++++|.+..++|.+.
T Consensus 270 ~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 270 MLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 22232 11222222 1111222 2234456667788888899999999999999874
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.009 Score=50.06 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=46.3
Q ss_pred CHHhHHHHHHHHHc-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 036303 118 DVVTYGVLIDCCCG-----QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNE----------------NKMVEAESM 176 (605)
Q Consensus 118 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~ 176 (605)
+-.+|..++..+.+ .|.++=....+..|.+.|+..|..+|+.|+.++=+. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44455555555443 355555555566666666666666666666555431 123345555
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHhccC
Q 036303 177 FRSMRECGVVPNLYTYNALMDGYCKVA 203 (605)
Q Consensus 177 ~~~~~~~~~~p~~~~~~~l~~~~~~~~ 203 (605)
+++|...|+-||..++..+++.+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 555555555555555555555554433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.031 Score=52.92 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 036303 449 RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDV 527 (605)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A 527 (605)
...+|.++.+.+++.. +.|+.+...++.+....++++.|...|+++.. +.||.. +|......+...|+.++|
T Consensus 319 ~~~~a~~~A~rAveld-----~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a 391 (458)
T PRK11906 319 AAQKALELLDYVSDIT-----TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEA 391 (458)
T ss_pred HHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHH
Confidence 3456667777776654 55666666777777777778888888888887 667655 666666667778888888
Q ss_pred HHHHHHHHHCCCCcc---HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 528 MMLLADMIKMGIVPD---AVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 528 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
.+.++++++ +.|. ..+....++.|+..+ .++|.++|-+-
T Consensus 392 ~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 392 RICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 888888776 4453 444455555666655 56777765443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.023 Score=44.51 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHH
Q 036303 435 FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC--TYT 512 (605)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~ 512 (605)
..+..-+....+.|++++|++.|+.+..+.+.+...+ .+--.++.+|.+.+++++|...+++.++ +.|+.. -|.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~--qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa 86 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAE--QAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYA 86 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccH--HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHH
Confidence 3344444555666777777777777766654433333 2334566667777777777777777766 344332 333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
....++......+ ..+..+. +..-|. +....|+..|+.+.+.-|++.
T Consensus 87 ~Y~~gL~~~~~~~---~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 87 YYMRGLSYYEQDE---GSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHhh---hHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCCh
Confidence 3333333222111 1222222 111122 124578889999999888865
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.016 Score=48.68 Aligned_cols=107 Identities=12% Similarity=0.166 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 036303 472 NHVLYAAIIQALC-----YDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRA----------------KRMLDVMML 530 (605)
Q Consensus 472 ~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~A~~~ 530 (605)
+-.+|..++..|. +.|..+=....+++|.+.|+.-|..+|+.|++.+=+. .+-+-|+.+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 3444444444444 3455666666677777777777777777777665421 234567888
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHhcCC----hhHHHHHHHHHHhcCCCCCC
Q 036303 531 LADMIKMGIVPDAVINQVMVRGYQENGD----LKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~ 578 (605)
+++|...|+.||.+++..+.+++.+.+. +..-.-++-+....+|-..|
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP~plp 177 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINPWPLP 177 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 8888888888888888888888877653 33333466667777765544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.25 Score=45.40 Aligned_cols=125 Identities=19% Similarity=0.177 Sum_probs=55.6
Q ss_pred HHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH--HHHccCChhHHHHHHHHHHhCCCCCCHHH--HHHH
Q 036303 87 CNALLNGLI--KKGKFDSVWEFYEEMVLCGLVADVVTYGVLID--CCCGQGDVMKALNLFDEMIDKGIEPTVVI--YTIL 160 (605)
Q Consensus 87 ~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l 160 (605)
|..|..+++ ..|+-..|.++-.+..+. +..|......++. +-.-.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 344443333 245555555555444322 2233333333332 223346666666666666542 11111 1112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHH
Q 036303 161 IHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEML 216 (605)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 216 (605)
.-...+.|..+.|..+-+..-..-+. -...+...+...+..|+++.|+++.+.-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 22223445555555555554443211 23344555555566666666666555443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.021 Score=44.67 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=64.0
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE-----VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTY 122 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 122 (605)
+..++..+..-+....+.|++++|.+.|+.+. .+-...+...++.++.+.++++.|...+++.++..+......|
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 45577788888888999999999999999883 2234567788899999999999999999999988655434445
Q ss_pred HHHHHHHHc
Q 036303 123 GVLIDCCCG 131 (605)
Q Consensus 123 ~~l~~~~~~ 131 (605)
-..+.+++.
T Consensus 86 a~Y~~gL~~ 94 (142)
T PF13512_consen 86 AYYMRGLSY 94 (142)
T ss_pred HHHHHHHHH
Confidence 555554443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.005 Score=42.86 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=27.4
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 482 ALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.|...+++++|.+++++++. ..|+ ...+.....++...|++++|.+.+++.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455555555555555555 3333 22444455555555555555555555554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.029 Score=50.57 Aligned_cols=130 Identities=17% Similarity=0.067 Sum_probs=55.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCC-CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCCHH-----
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGY-CSPNHVLYAAIIQALCYDGQILKASKLFSDMRS----DNLRPDNC----- 509 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~----- 509 (605)
+..+....+.++++++.|+.+.+-....+ .......+..+...|.+..|+++|.-...++.+ .++..=..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 34444444455555555555444221100 011123344555555555555555544444332 11111011
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIK----MGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
....+.-++...|.+-.|.+..+++.+ .|-.+ .......++++|...|+.+.|..-|+.+
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122233344445555555554444332 23222 1334445566666666666665555544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.059 Score=53.26 Aligned_cols=121 Identities=11% Similarity=0.035 Sum_probs=74.4
Q ss_pred cCCHHHHHHHHHHhhhccCCCCCCccHHHH-HHHHHHHHccCCHHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHhcC
Q 036303 447 NGRISNALNFFLEKTDKTDGGYCSPNHVLY-AAIIQALCYDGQILKASKLFSDMRSD--NL-RPDNCTYTTMLRGLLRAK 522 (605)
Q Consensus 447 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~p~~~~~~~l~~~~~~~g 522 (605)
....+.|.+++..+..++ |+...| -.-.+.+...|++++|++.|+++... .. +.....+..+...+.-..
T Consensus 246 ~~~~~~a~~lL~~~~~~y------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~ 319 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH 319 (468)
T ss_pred CCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc
Confidence 345667777777777664 343333 33445566677788888877765531 11 112335666777777788
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHH-HHHHHHHhcCCh-------hHHHHHHHHHHhcCC
Q 036303 523 RMLDVMMLLADMIKMGIVPDAVINQ-VMVRGYQENGDL-------KSAFRCSEFLKESRI 574 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~~~~~ 574 (605)
+|++|...+.++.+.. ..+..+|. ..+-++...|+. ++|...++++.....
T Consensus 320 ~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred hHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 8888888888887632 22333443 345566777777 777777777766544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.34 Score=44.95 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036303 55 FSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCG 114 (605)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (605)
|..++......|+.+-|..+++.=+. . ..-+..+.+.|+.+.| +.+..+.|
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~~Ep~---~---~~qVplLL~m~e~e~A---L~kAi~Sg 53 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLELEPR---A---SKQVPLLLKMGEDELA---LNKAIESG 53 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHHcCCC---h---HHHHHHHhcCCchHHH---HHHHHHcC
Confidence 56677777788888888887764432 1 1113344555665555 44555554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0024 Score=36.33 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 543 AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
+.++..++.+|...|++++|++.++++.+++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3578889999999999999999999999999874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0033 Score=44.49 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC-CCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGY-CSPN-HVLYAAIIQALCYDGQILKASKLFSDMR 500 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (605)
+++.++..|...|++++|+..|+++++.....+ -.|+ ..++..++.++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444455555555555555554443210000 0111 2334444555555555555555555443
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.024 Score=42.88 Aligned_cols=93 Identities=16% Similarity=0.037 Sum_probs=65.3
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHHhc
Q 036303 481 QALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD---AVINQVMVRGYQEN 556 (605)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 556 (605)
.++...|+.+.|++.|.+.+. +-| ....|+.-.+++.-+|+.++|+.-+.++++..-.-+ ...|..-+..|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 356677888888888888776 443 455788888888888888888888888776432222 23444556677788
Q ss_pred CChhHHHHHHHHHHhcCCC
Q 036303 557 GDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 557 g~~~~A~~~~~~~~~~~~~ 575 (605)
|+-+.|+.-|+.+.+++.+
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 8888888888888777654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.14 Score=46.52 Aligned_cols=130 Identities=9% Similarity=-0.052 Sum_probs=56.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-----ccHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEAK-----ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCS-----PNHV 474 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~ 474 (605)
+..++...+.++++++.|+...+.. ......++..|...|....++++|.-+..++......-++. ....
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444445555555555555544321 01112244555555555555555555444433311110000 0111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRS----DNLRPDN-CTYTTMLRGLLRAKRMLDVMMLLADM 534 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (605)
..-.+..++...|....|.+.-+++.+ .|-.|.. .....+.+.|...|+.+.|+.-++++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122233344455555555555544433 2322221 24445555666666666666555554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.53 Score=46.13 Aligned_cols=410 Identities=14% Similarity=0.112 Sum_probs=218.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 036303 52 PSVFSTLIIAFSEMGHIEEALWVYRKI-EVLPAI-QACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCC 129 (605)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (605)
...|+.++.--......+.+...+..+ ..-|.. -.|......-.+.|..+.+..+|++.+.. ++.+...|......+
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 344666665555555555555666655 233443 34555566666778888888888888764 555666666655544
Q ss_pred H-ccCChhHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHh---cc-
Q 036303 130 C-GQGDVMKALNLFDEMIDK-GIE-PTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYC---KV- 202 (605)
Q Consensus 130 ~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~- 202 (605)
. ..|+.+.....|+..... |.. .+...|...+..-..++++.....+++++++. | ...++..-..|. ..
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~ 199 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQN 199 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcC
Confidence 3 457777777888777665 322 24456777777777778888888888888774 2 222332222221 11
Q ss_pred -----CChHHHHHHHHHHHhC-CCC---CCcchHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 036303 203 -----ADVNRALEFYHEMLHH-NLQ---PNVVTFGVLMDGLC-KVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKA 272 (605)
Q Consensus 203 -----~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (605)
-..+++.++-...... ..+ +.......-+.--. ..+..+.+......... ..-.++...
T Consensus 200 ~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s 268 (577)
T KOG1258|consen 200 EEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKS 268 (577)
T ss_pred ChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhh
Confidence 1122222222221110 000 00000000000000 00011111111111100 011122222
Q ss_pred CCHHHHHHHHHHHHhCC---C----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 273 GNLFEAMSLCSEMEKFE---I----SPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDM 345 (605)
Q Consensus 273 ~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 345 (605)
....+....|+.-.+.. + +++..+|...+.--...|+++...-+++.+.-.- ..=...|-..+......|+.
T Consensus 269 ~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~ 347 (577)
T KOG1258|consen 269 EEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDV 347 (577)
T ss_pred HhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCch
Confidence 33333444444433321 1 2345678888888889999999999998876421 11123344445555556888
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHH---HH
Q 036303 346 EKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVV-VFTALIDGLSKDGNMKETL---RL 421 (605)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~---~~ 421 (605)
+-|..++....+-.++..+.+-..-....-..|+++.|..+++.+...- |+.. .-..-+....+.|+.+.+. .+
T Consensus 348 ~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l 425 (577)
T KOG1258|consen 348 SLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNEL 425 (577)
T ss_pred hHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHH
Confidence 8888888777665443333222222233445789999999999998874 4432 2222334456778888777 44
Q ss_pred HHHHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccC
Q 036303 422 YKEMLEAKITPSVFTVSSLIH-----GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDG 487 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 487 (605)
+...... ..+......+.. .+.-.++.+.|..++.++.... +++...|..+++.....+
T Consensus 426 ~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-----~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 426 YSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-----PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-----CccHHHHHHHHHHHHhCC
Confidence 4443332 222222222222 1334678999999999998863 677777777777665544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.33 Score=43.38 Aligned_cols=205 Identities=18% Similarity=0.113 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 364 VVTFSSLIDGQCKAGNIDAAMGLYTEMVIK-SLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
..........+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344555555566666666666666655531 123344445555555566666667777776666543222 122222222
Q ss_pred -HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Q 036303 443 -GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD--NCTYTTMLRGLL 519 (605)
Q Consensus 443 -~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 519 (605)
.+...|+++.|...+.+.....+ . .......+......+...++.+.+...+.++.. ..++ ...+..+...+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDP-E-LNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-C-ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHH
Confidence 56677777777777777644210 0 001222333333335566778888888887776 3333 456667777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 520 RAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
..++++.|...+..... ..|+ ...+..+...+...|+++++...+++..+..|.
T Consensus 214 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 77778888888877776 3333 455556666666667788888888888877766
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.037 Score=48.44 Aligned_cols=91 Identities=21% Similarity=0.248 Sum_probs=61.0
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 036303 444 LFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD-NLRPD-NCTYTTMLRGLLRA 521 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 521 (605)
+.+.|++.+|...|...++.++.+...|+...| |+.++...|++++|..+|..+.+. +-.|. +..+.-|..+..+.
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 455677777777777777777666666665544 667777777777777777777662 11222 34566666677777
Q ss_pred CCHHHHHHHHHHHHH
Q 036303 522 KRMLDVMMLLADMIK 536 (605)
Q Consensus 522 g~~~~A~~~~~~~~~ 536 (605)
|+.++|..+|++.++
T Consensus 229 ~~~d~A~atl~qv~k 243 (262)
T COG1729 229 GNTDEACATLQQVIK 243 (262)
T ss_pred cCHHHHHHHHHHHHH
Confidence 777777777777775
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.061 Score=51.07 Aligned_cols=89 Identities=12% Similarity=-0.055 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHHHH
Q 036303 488 QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFRCS 566 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 566 (605)
...+|.++.+++++.+ +-|+.....+..+....++++.|...|+++.. +.|+ +.+|...+....-+|+.++|...+
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567888889998843 33666777777777888889999999999998 6675 888999999999999999999999
Q ss_pred HHHHhcCCCCCCC
Q 036303 567 EFLKESRIGSSET 579 (605)
Q Consensus 567 ~~~~~~~~~~~~~ 579 (605)
+++.+++|..-..
T Consensus 396 ~~alrLsP~~~~~ 408 (458)
T PRK11906 396 DKSLQLEPRRRKA 408 (458)
T ss_pred HHHhccCchhhHH
Confidence 9999999976543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0093 Score=56.25 Aligned_cols=100 Identities=9% Similarity=-0.066 Sum_probs=73.3
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC----TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVI 545 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 545 (605)
+.+...++.+..+|...|++++|+..|+++++ +.|+.. .|..+..+|...|+.++|+..++++++.+ .+ .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 55578899999999999999999999999998 677754 48899999999999999999999999842 22 1
Q ss_pred HHHHHH--HHHhcCChhHHHHHHHHHHhcCCC
Q 036303 546 NQVMVR--GYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 546 ~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
|..+.. .+....+.++..++++.+.+-+-.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 221111 122334445667777777776543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.003 Score=35.92 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 543 AVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
+.+|..++.+|...|++++|+..++++.+.+|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 357888999999999999999999999999986
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.43 Score=42.44 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=99.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc
Q 036303 407 DGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD 486 (605)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 486 (605)
......|++.+|...|+...... +.+......++.+|...|+.+.|..++..+..... .........-+..+.+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~----~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ----DKAAHGLQAQIELLEQA 216 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch----hhHHHHHHHHHHHHHHH
Confidence 34567788888888888888765 44566777888888899999999888887654321 11112222334445555
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHhcCChhHHHH
Q 036303 487 GQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIV-PDAVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
....+...+-.+.-+ .| |...-..+...+...|+.++|.+.+-.+++.... -|...-..++..+.-.|.-+.+..
T Consensus 217 a~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 217 AATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred hcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 555555555555543 45 5556667777888899999998887777654322 256667777888877776555544
Q ss_pred HHH
Q 036303 565 CSE 567 (605)
Q Consensus 565 ~~~ 567 (605)
.++
T Consensus 294 ~~R 296 (304)
T COG3118 294 AYR 296 (304)
T ss_pred HHH
Confidence 443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.95 Score=46.25 Aligned_cols=46 Identities=22% Similarity=0.395 Sum_probs=20.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHH
Q 036303 165 CNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEF 211 (605)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 211 (605)
....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHH
Confidence 3333344444444444444443 333334444444444444444333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0039 Score=37.99 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 544 VINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.++..++.+|.+.|++++|+++++++.+.+|++..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 35666777777777777777777777777776654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.36 Score=40.55 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=85.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHH
Q 036303 399 VVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAA 478 (605)
Q Consensus 399 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (605)
+..|+.+.--+...|+++.|.+.|+...+.+..-+....|.-+ ++.--|++.-|.+-+...-...+ ..|=...|-.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~---~DPfR~LWLY 174 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDP---NDPFRSLWLY 174 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCC---CChHHHHHHH
Confidence 3456666666677777888887777777765333333333322 23345677777666666555431 1121122211
Q ss_pred HHHHHHccCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-------HHHHHHHH
Q 036303 479 IIQALCYDGQILKASKLF-SDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-------AVINQVMV 550 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~ 550 (605)
+ --..-++.+|..-+ ++... .|..-|...+-.+. .|+..+ ..+++++... -..+ .++|..++
T Consensus 175 l---~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~ 244 (297)
T COG4785 175 L---NEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKISE-ETLMERLKAD-ATDNTSLAEHLTETYFYLG 244 (297)
T ss_pred H---HHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-HhhccH-HHHHHHHHhh-ccchHHHHHHHHHHHHHHH
Confidence 1 11233566665544 33332 23344443333222 222221 2233333321 1111 45777888
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 551 RGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
+-+...|+.++|...|+-+...+.-+.
T Consensus 245 K~~l~~G~~~~A~~LfKLaiannVynf 271 (297)
T COG4785 245 KYYLSLGDLDEATALFKLAVANNVYNF 271 (297)
T ss_pred HHHhccccHHHHHHHHHHHHHHhHHHH
Confidence 888888888888888887777555433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.36 Score=41.43 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 036303 262 YNCLIDGHCKAGNLFEAMSLCSEMEKFE---ISPDVFTYNILIKGLCGVGQLEGAEGL 316 (605)
Q Consensus 262 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~ 316 (605)
+...|-.|.-..++..|...++.-.+.+ -+-+..+...|+.+| ..|+.+++..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3344444555556666666666543321 122344455555544 33555554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.041 Score=52.06 Aligned_cols=66 Identities=23% Similarity=0.244 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHH----HHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 036303 431 TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHV----LYAAIIQALCYDGQILKASKLFSDMRSD 502 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (605)
+.+...++.++.+|.+.|++++|+..|++.+. +.|+.. +|..+..+|...|+.++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE------LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55677899999999999999999999999987 777743 5889999999999999999999999873
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.54 E-value=1.1 Score=45.31 Aligned_cols=346 Identities=12% Similarity=0.054 Sum_probs=178.2
Q ss_pred CCCCCCcccHH-----HHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH--HHHHHHHHHHHHCCC
Q 036303 183 CGVVPNLYTYN-----ALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGEL--RAAGNFFVHMAKFGV 255 (605)
Q Consensus 183 ~~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~ 255 (605)
.|++.+..-|. .++.-+...+.+..|+++-.-+-..-... ...|......+.+..+. +.+.+.+++-.+...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 35555544443 35566667788888888876654321111 45666666666655321 222222222222211
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 036303 256 FPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEIS----PDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVT 331 (605)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 331 (605)
.....|..+...-...|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.+..+ .+...
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~ 580 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSS 580 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHH
Confidence 34456777777777889888888777542211100 01111223333344445554444444444332 01111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHC-CCCCCHhhHHHHHHHH
Q 036303 332 YNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEM-VIK-SLVPDVVVFTALIDGL 409 (605)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~~~~l~~~~ 409 (605)
+. ....+...|..+|.+..+.. +..+ +-..|....+...+-.+.-+- ... .+.+-.........++
T Consensus 581 l~------~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~ 648 (829)
T KOG2280|consen 581 LF------MTLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAF 648 (829)
T ss_pred HH------HHHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHH
Confidence 11 11223345555665554431 1111 112222222222221111111 000 0111122223333444
Q ss_pred HhcCCHH---HH-------HHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHH
Q 036303 410 SKDGNMK---ET-------LRLYKEMLE-AKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAA 478 (605)
Q Consensus 410 ~~~g~~~---~a-------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (605)
.+..... +| +.+.+.+.. .+..-...+.+--+..+...|+..+|.++-.+.. -||-..|-.
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--------ipdKr~~wL 720 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--------IPDKRLWWL 720 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--------CcchhhHHH
Confidence 4433211 11 111122211 1323334455566667788899999998887764 567777777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 036303 479 IIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGD 558 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 558 (605)
-+.+++..+++++-+++-+... .+..|.-.+.+|.+.|+.++|.+++-+.- +.. -.+.+|.+.|+
T Consensus 721 k~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~ 785 (829)
T KOG2280|consen 721 KLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGD 785 (829)
T ss_pred HHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhcc
Confidence 7888899999988777766543 25578888999999999999998865332 111 46778999999
Q ss_pred hhHHHHHHHH
Q 036303 559 LKSAFRCSEF 568 (605)
Q Consensus 559 ~~~A~~~~~~ 568 (605)
+.+|.+..-+
T Consensus 786 ~~eAad~A~~ 795 (829)
T KOG2280|consen 786 VKEAADLAAE 795 (829)
T ss_pred HHHHHHHHHH
Confidence 9999876443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.31 Score=41.48 Aligned_cols=100 Identities=9% Similarity=-0.053 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHhC--CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-----HHHH-HHHHHHHHh
Q 036303 487 GQILKASKLFSDMRSD--NLRP---DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-----AVIN-QVMVRGYQE 555 (605)
Q Consensus 487 g~~~~A~~~~~~~~~~--~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~-~~l~~~~~~ 555 (605)
.+++.|+..|+.+-+. |-.. ....+.-+...-...+++.+|+.+|++.....+..+ ..-| ..-+-++.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 5677788888777652 1111 122444444545567899999999998876544332 2222 233334444
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCCCccchhh
Q 036303 556 NGDLKSAFRCSEFLKESRIGSSETEGHTTRS 586 (605)
Q Consensus 556 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 586 (605)
.+|.=.+...+++..+.+|....+....+..
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~dsREckflk 238 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDSRECKFLK 238 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccccHHHHHHH
Confidence 5888888999999999999888775544433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.56 Score=40.91 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCC
Q 036303 514 MLRGLLRAKRMLDVMMLLADMIKMGIVPD---AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETE 580 (605)
Q Consensus 514 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 580 (605)
+..-|.+.|.+-.|..-++.|++. .+.+ ...+..+..+|.+.|-.++|.+.-+.+.. +.++++|.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~-N~p~s~~~ 240 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA-NYPDSQWY 240 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh-cCCCCcch
Confidence 345677889999999999999974 2222 55677788899999999999987665555 55556553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.037 Score=44.96 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=29.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 122 YGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSM 180 (605)
Q Consensus 122 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 180 (605)
...++..+...|++++|..+.+.+.... |.+...|..+|.+|...|+...|.++|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444455555555555555555555543 234555555555555555555555555554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.084 Score=40.06 Aligned_cols=93 Identities=13% Similarity=0.005 Sum_probs=64.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCH--HHHHHHHHHH
Q 036303 442 HGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD-NLRPDN--CTYTTMLRGL 518 (605)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~--~~~~~l~~~~ 518 (605)
.++...|+++.|++.|.+.+.. .+.+...||.-..++.-+|+.++|++-++++++. |-.... ..|..-...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 4566778888888888887765 3566777888888888888888888888888773 222111 1333344456
Q ss_pred HhcCCHHHHHHHHHHHHHCCC
Q 036303 519 LRAKRMLDVMMLLADMIKMGI 539 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~ 539 (605)
...|+.+.|..-|+.+.+.|.
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCC
Confidence 667888888888887777663
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.40 E-value=1.4 Score=45.15 Aligned_cols=225 Identities=12% Similarity=0.101 Sum_probs=144.2
Q ss_pred hhhHhhcCCchHHHHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcCCC
Q 036303 2 FYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKIEVL 81 (605)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 81 (605)
+.++...+++---..++.++...+...+..- . ++. .........+-....-+....+...++-|+.+.+.....
T Consensus 290 ~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~-~---vlt--sdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d 363 (933)
T KOG2114|consen 290 FKAYDLRNRYVLYSSVLEDLSDNLIEWSFDC-L---VLT--SDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLD 363 (933)
T ss_pred eehhhhcCcccchHHhHHHHHHHHHhcCCcE-E---EEe--cCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCC
Confidence 4566677777777777788877766665111 0 000 000111122334556677788889999999999887644
Q ss_pred CCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 036303 82 PAI--QACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTI 159 (605)
Q Consensus 82 ~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (605)
++. ......+..+.+.|++++|...|-+.+.. +.| ..++.-+....+...-..+++.+.+.|.. +..--..
T Consensus 364 ~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttl 436 (933)
T KOG2114|consen 364 EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTL 436 (933)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHH
Confidence 432 34455667778899999999988877654 333 23445556666777778888888888865 5566678
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 036303 160 LIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGE 239 (605)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (605)
|+.+|.+.++.++..+..+.-. .|.. ..-....+..+.+.+-.++|.-+-.+... ...... -.+-..++
T Consensus 437 LLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~---ille~~~n 505 (933)
T KOG2114|consen 437 LLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLD---ILLEDLHN 505 (933)
T ss_pred HHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHH---HHHHHhcC
Confidence 9999999999988777666544 2211 12245566677777777777666554332 222222 23445788
Q ss_pred HHHHHHHHHHH
Q 036303 240 LRAAGNFFVHM 250 (605)
Q Consensus 240 ~~~a~~~~~~~ 250 (605)
+++|.+.+..+
T Consensus 506 y~eAl~yi~sl 516 (933)
T KOG2114|consen 506 YEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcC
Confidence 99999988776
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.2 Score=44.15 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=31.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036303 225 VTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEK 287 (605)
Q Consensus 225 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 287 (605)
.+...+..-+.+...+..|-++|.++-. ...++..+...++|.+|..+-+...+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 3444444444555566666666666643 12355666667777777776666544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.055 Score=44.53 Aligned_cols=95 Identities=14% Similarity=0.170 Sum_probs=69.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 480 IQALCYDGQILKASKLFSDMRSDNLRPD------NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
+.-+...|++++|..-|..+++. -|. +..|..-..+..+.++++.|+.-..++++ +.| ....+..-+.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHH
Confidence 34456778888888888888773 332 22455555566778888888888888887 445 36666677888
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 553 YQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
|.+...+++|+.-|+++.+.+|....
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 88888889999888888888887653
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.52 Score=41.94 Aligned_cols=141 Identities=11% Similarity=0.029 Sum_probs=69.3
Q ss_pred HHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHH
Q 036303 61 AFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKA 138 (605)
Q Consensus 61 ~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 138 (605)
.....|++.+|..+|... ..+.+..+-..++.+|...|+.+.|..++..+...-..........-+..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 345556666666666554 233344555556666666666666666666554331111111111223344444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCcccHHHHHHHHhccCC
Q 036303 139 LNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMREC--GVVPNLYTYNALMDGYCKVAD 204 (605)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~ 204 (605)
..+-..+... +-|...-..+...+...|+.+.|.+.+-.+... |.. |...-..++..+.-.|.
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 4444444432 225555555666666666666666555544433 222 34444555555555553
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.7 Score=44.34 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036303 438 SSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDM 499 (605)
Q Consensus 438 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (605)
..+..++.+.|+.++|++.+.++++..+ ...+......++.++...+.+.++..++.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p---~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFP---NLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCC---ccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4444555555555555555555554321 0111223345555555555555555555554
|
The molecular function of this protein is uncertain. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.5 Score=41.53 Aligned_cols=428 Identities=13% Similarity=0.113 Sum_probs=217.1
Q ss_pred HHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 036303 70 EALWVYRKIE-VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 70 ~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 148 (605)
+-+++=+++. .|.++.+|..|++-+..++..++..+++++|..- .+--+.+|...+..-....++.....+|.+.+..
T Consensus 27 D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 27 DELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred hHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 4446666774 6678899999999999999999999999999764 3334567887787777789999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHH-CCCCCCc-ccHHHHHHHH---hccCChH------HHHHH
Q 036303 149 GIEPTVVIYTILIHGLCNENKM------VEAESMFRSMRE-CGVVPNL-YTYNALMDGY---CKVADVN------RALEF 211 (605)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~-~~~~p~~-~~~~~l~~~~---~~~~~~~------~a~~~ 211 (605)
..+...|...+.--.+.+.. -...+.|+-... .++.|-. ..|+..+..+ -..|.++ ...+.
T Consensus 106 --~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 --SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred --hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 34566777666554443321 112233333222 3444433 3455444433 2334433 34445
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh--C
Q 036303 212 YHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVF-PNIFVYNCLIDGHCKAGNLFEAMSLCSEMEK--F 288 (605)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 288 (605)
|.+++...+ .....+-. +++.-+.-+..+....+. ..... +..|...++++.. .
T Consensus 184 Y~ral~tP~----~nleklW~------dy~~fE~e~N~~TarKfvge~sp~-------------ym~ar~~yqe~~nlt~ 240 (660)
T COG5107 184 YMRALQTPM----GNLEKLWK------DYENFELELNKITARKFVGETSPI-------------YMSARQRYQEIQNLTR 240 (660)
T ss_pred HHHHHcCcc----ccHHHHHH------HHHHHHHHHHHHHHHHHhcccCHH-------------HHHHHHHHHHHHHHhc
Confidence 555554211 11111111 111111111111110000 00001 1222222222211 0
Q ss_pred CC----CCChhh-----------HHHHHHHHHh-----cCC-H-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 289 EI----SPDVFT-----------YNILIKGLCG-----VGQ-L-EGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDME 346 (605)
Q Consensus 289 ~~----~~~~~~-----------~~~l~~~~~~-----~~~-~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 346 (605)
|. +.+..+ |...|.--.. .|+ . ...--++++.... +......|-.--..+...++-+
T Consensus 241 Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q 319 (660)
T COG5107 241 GLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQ 319 (660)
T ss_pred cccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHH
Confidence 10 001111 1111111100 011 1 1111122222221 1223333333333344455555
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------CC---------------CC
Q 036303 347 KALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK--------------SL---------------VP 397 (605)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~---------------~~ 397 (605)
.|.....+.... .|+. -..+...|....+.+.....|+..... +. .-
T Consensus 320 ~al~tv~rg~~~--spsL--~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k 395 (660)
T COG5107 320 KALKTVERGIEM--SPSL--TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINK 395 (660)
T ss_pred HHHHHHHhcccC--CCch--heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhh
Confidence 555554443332 2221 111222222222322222222221110 00 00
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHH
Q 036303 398 DVVVFTALIDGLSKDGNMKETLRLYKEMLEAK-ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLY 476 (605)
Q Consensus 398 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (605)
-...|...+....+..-.+.|..+|-++.+.+ +.++..++++++..+ ..|+...|.++|+--+... ||...|
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f------~d~~~y 468 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF------PDSTLY 468 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC------CCchHH
Confidence 12234445555556666788888888888877 566677777776654 4678888888888877753 443333
Q ss_pred -HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 477 -AAIIQALCYDGQILKASKLFSDMRSDNLRPD--NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 477 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+-.+..+..-++-..|..+|+..++. +..+ ..+|..+++--..-|++..+..+=++|.+
T Consensus 469 ~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 469 KEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 45666777788888888888866652 2223 44788888877788888888777777765
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.67 Score=37.48 Aligned_cols=133 Identities=11% Similarity=0.080 Sum_probs=86.8
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---hHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKIEV----LPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV---TYG 123 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~ 123 (605)
+...|..-+ -+.+.|+.++|+..|..+.. .-.+-+.........+.|+...|...|.++-.....|... .-.
T Consensus 58 sgd~flaAL-~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAAL-KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHH-HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 334444333 24566888888888887731 1223344455566677888888888888887664444333 112
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 124 VLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECG 184 (605)
Q Consensus 124 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (605)
.-.-.+...|.++......+.+...+-+.-...-..|.-+-.+.|++.+|.+.|..+....
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 2223456788888888888877766545455566777778888888888888888887643
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.26 Score=42.21 Aligned_cols=200 Identities=12% Similarity=0.121 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCC
Q 036303 364 VVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPD------VVVFTALIDGLSKDGNMKETLRLYKEML----EAKITPS 433 (605)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~ 433 (605)
...|..-..+|...+++++|...+.+..+.. ..+ ...|...+-..-....+.++..++++.. +.| .|+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spd 108 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPD 108 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-Ccc
Confidence 3456666778888899999998888776321 111 1223333333334556677777777664 345 444
Q ss_pred HHHH--HHHHHHHHhcCCHHHHHHHHHHhhhccCCCC-CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC
Q 036303 434 VFTV--SSLIHGLFKNGRISNALNFFLEKTDKTDGGY-CSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRP 506 (605)
Q Consensus 434 ~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p 506 (605)
.... ..... ..+.-++++|+.+|++.......++ ...-...+....+.+++...+.+|-..+.+-... .-.|
T Consensus 109 tAAmaleKAak-~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~ 187 (308)
T KOG1585|consen 109 TAAMALEKAAK-ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYN 187 (308)
T ss_pred hHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcc
Confidence 4332 22222 3456677888888887777533211 1111223444556667777777776666553321 1122
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCc-cHHHHHHHHHHHHhcCChhHHHHHHH
Q 036303 507 DN-CTYTTMLRGLLRAKRMLDVMMLLADMIKMG--IVP-DAVINQVMVRGYQENGDLKSAFRCSE 567 (605)
Q Consensus 507 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 567 (605)
+. ..|...+-.+....++..|...+...-+.+ ..+ +..+...|+.+| ..||.+++.++..
T Consensus 188 ~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 188 SQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 22 134455555666778888888877654322 122 456666666655 5677777765543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.28 Score=47.86 Aligned_cols=154 Identities=13% Similarity=0.158 Sum_probs=68.1
Q ss_pred HHhcCChHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHH
Q 036303 62 FSEMGHIEEALWVYR--KIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKAL 139 (605)
Q Consensus 62 ~~~~g~~~~A~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 139 (605)
..-.|+++++.+..+ ++...-+......++..+.+.|..+.|+++-.. +. .-.....+.|+++.|.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHH
Confidence 444566666555544 111111133345555666666666666554322 11 1123344566666665
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCC
Q 036303 140 NLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHN 219 (605)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 219 (605)
++.+.. .+...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+...++.+.....|
T Consensus 339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 554332 2455666666666666666666666655432 4445555555555555555554444433
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 036303 220 LQPNVVTFGVLMDGLCKVGELRAAGNFFV 248 (605)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 248 (605)
-++....++.-.|+.++..+++.
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 12233333334455555444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.022 Score=34.62 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036303 87 CNALLNGLIKKGKFDSVWEFYEEMVLC 113 (605)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (605)
+..+...+.+.|++++|.++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444445555555555555555555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.015 Score=33.46 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 545 INQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
++..|+.+|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356778888888888888888888553
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.35 Score=43.49 Aligned_cols=156 Identities=13% Similarity=0.026 Sum_probs=107.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH----HHHHHHHHHHHhcCCH
Q 036303 305 CGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNV----VTFSSLIDGQCKAGNI 380 (605)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 380 (605)
...|+..+|-..++++.+. .+.|...++..=.+|.-.|+.+.-...++++... ..++. ..-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3567778888888888775 4557778888888888899988888888888765 22333 2333444556678899
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 381 DAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPS---VFTVSSLIHGLFKNGRISNALNFF 457 (605)
Q Consensus 381 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 457 (605)
++|.+.-++..+.+ +.|...-.+....+...|+.+++.++..+-...=-..+ ..-|-.....+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99998888887765 44666777778888888999999888766543210111 112333444556678899999999
Q ss_pred HHhhhc
Q 036303 458 LEKTDK 463 (605)
Q Consensus 458 ~~~~~~ 463 (605)
+.-+-+
T Consensus 271 D~ei~k 276 (491)
T KOG2610|consen 271 DREIWK 276 (491)
T ss_pred HHHHHH
Confidence 865543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.019 Score=32.51 Aligned_cols=32 Identities=19% Similarity=0.090 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 544 VINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
.+|..++.+|...|++++|...|+++.+.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46788999999999999999999999998884
|
... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.32 Score=40.26 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=59.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh
Q 036303 442 HGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLR 520 (605)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~ 520 (605)
.-+...|++++|..-|..++..-+..........|..-..++.+.+.++.|+.-..++++ +.|+.. .+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHh
Confidence 335567777777777777776532111112233455555667777888888888877777 555543 44444567777
Q ss_pred cCCHHHHHHHHHHHHH
Q 036303 521 AKRMLDVMMLLADMIK 536 (605)
Q Consensus 521 ~g~~~~A~~~~~~~~~ 536 (605)
..++++|++-++++++
T Consensus 181 ~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILE 196 (271)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 7888888888888776
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.29 Score=38.05 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=38.6
Q ss_pred CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 036303 467 GYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS-DNLRPDNCTYTTMLRGLL 519 (605)
Q Consensus 467 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~ 519 (605)
+...|+...+.+++.+|+..|++..|+++.+...+ .+++.+..+|..|+.-+.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 44677788888888888888888888888887766 355556667777776443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.95 Score=38.18 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036303 85 QACNALLNGLIKKGKFDSVWEFYEEMVLC 113 (605)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (605)
.+||.+.--+...|+++.|.+.|+...+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 44444444444555555555555555444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.11 Score=42.82 Aligned_cols=90 Identities=16% Similarity=0.089 Sum_probs=65.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 036303 479 IIQALCYDGQILKASKLFSDMRSDNLRPDNCTY-----TTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGY 553 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 553 (605)
+...++..|++++|+..++..+. .|....+ ..|.+.....|.+++|+..++.....+ ..+.....-++++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHH
Confidence 44567788889999998888775 2322222 345566778899999998877544322 2345556778999
Q ss_pred HhcCChhHHHHHHHHHHhcC
Q 036303 554 QENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 554 ~~~g~~~~A~~~~~~~~~~~ 573 (605)
...|+.++|+..|+++.+.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 99999999999999999887
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.9 Score=40.19 Aligned_cols=102 Identities=21% Similarity=0.171 Sum_probs=49.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC 484 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 484 (605)
.+.-+...|+...|.++-++. . -|+...|...+.+++..++|++-.++... +.++..|..++.+|.
T Consensus 183 Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s----------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS----------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----------CCCCCChHHHHHHHH
Confidence 334444555555555544333 1 24555555555566666666555443321 112244555555555
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 485 YDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMML 530 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 530 (605)
..|+..+|..++.++ + + ..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHH
Confidence 556666655555541 1 1 2233445555555555543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.83 Score=36.97 Aligned_cols=144 Identities=16% Similarity=0.117 Sum_probs=97.6
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHccCChhHHHHHHHHHHhCCCCC
Q 036303 74 VYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV-TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEP 152 (605)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 152 (605)
.++.-........|..-+. +.+.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-.....|
T Consensus 49 yw~~s~as~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P 127 (221)
T COG4649 49 YWQTSRASKSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP 127 (221)
T ss_pred hhcccccccchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc
Confidence 3444433444555554443 467788999999999999887653322 33444556778899999999999998763333
Q ss_pred CHH-HH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhC
Q 036303 153 TVV-IY--TILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHH 218 (605)
Q Consensus 153 ~~~-~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 218 (605)
-.. -. ..-...+...|.+++.....+-+...+-+-....-..|.-+-.+.|++.+|.+.|..+...
T Consensus 128 ~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 128 QIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred chhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 322 11 1122345678999999888888776554434445566777888999999999999988764
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.43 Score=43.01 Aligned_cols=157 Identities=13% Similarity=0.129 Sum_probs=108.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH----HHHHHHHhcCCH
Q 036303 340 CKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFT----ALIDGLSKDGNM 415 (605)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 415 (605)
...|+..+|-..++++++. .|.|...+...-.++...|+.+.-...++++... ..+|...|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3567788888888888876 4567777777778888889888888888887754 233443333 233345678899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 036303 416 KETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKL 495 (605)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 495 (605)
++|.+.-++..+.+ +.|......+...+...|++.++.++..+....-..+.+... ..|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlas-HNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLAS-HNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHh-hhhHHHHHhhhcccchhHHHHH
Confidence 99999988888876 667777778888888889999999888765543221111111 1222334456677899999999
Q ss_pred HHHHH
Q 036303 496 FSDMR 500 (605)
Q Consensus 496 ~~~~~ 500 (605)
|++=+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 97633
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.015 Score=32.91 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=22.5
Q ss_pred HHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHH
Q 036303 531 LADMIKMGIVP-DAVINQVMVRGYQENGDLKSAF 563 (605)
Q Consensus 531 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 563 (605)
++++++ +.| ++.+|..++.+|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 455555 445 5888888888888888888875
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.6 Score=42.13 Aligned_cols=149 Identities=10% Similarity=0.096 Sum_probs=85.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 036303 300 LIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGN 379 (605)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 379 (605)
++...-+..++..-++.-++..+. .||-.+.-.++ +--......++.+++++..+.|- ..+..-- .....|.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s~-~~~~~g~ 245 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----ASLGKSQ-FLQHHGH 245 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hhhchhh-hhhcccc
Confidence 344444555666666666666654 23332221111 12234457788888888776531 1111000 0011111
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 380 IDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKIT-PSVFTVSSLIHGLFKNGRISNALNFFL 458 (605)
Q Consensus 380 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 458 (605)
.++....+...+-..+-..+..+..+.|+.++|++.++++.+.... ....+...|+.++...+.+.++..++.
T Consensus 246 ------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 246 ------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred ------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1112222222233344456777788999999999999999875422 234477889999999999999999998
Q ss_pred Hhhh
Q 036303 459 EKTD 462 (605)
Q Consensus 459 ~~~~ 462 (605)
+.-+
T Consensus 320 kYdD 323 (539)
T PF04184_consen 320 KYDD 323 (539)
T ss_pred Hhcc
Confidence 8643
|
The molecular function of this protein is uncertain. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.8 Score=38.50 Aligned_cols=200 Identities=18% Similarity=0.107 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 036303 329 VVTYNSLIDGYCKEGDMEKALSVCSQMTEK-GVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALID 407 (605)
Q Consensus 329 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 407 (605)
..........+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344455555555666666666665555431 122344445555555556666666666666666542222 111122222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCc-cHHHHHHHHHHH
Q 036303 408 -GLSKDGNMKETLRLYKEMLEAKI--TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSP-NHVLYAAIIQAL 483 (605)
Q Consensus 408 -~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 483 (605)
.+...|+++.+...+.+...... ......+......+...++.+.++..+.+..... +. ....+..+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 212 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-----PDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-----cccchHHHHHhhHHH
Confidence 56677777777777777655221 0123333334444566777788888887777653 22 355566677777
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 484 CYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
...++++.|...+..+.. ..|+ ...+..+...+...+..+++...+.+.+.
T Consensus 213 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 213 LKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777778888888887776 3444 33444555555566667888877777775
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.025 Score=31.68 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 545 INQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
++..++.++.+.|++++|.+.++++.+..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45678889999999999999999999988864
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.41 Score=46.72 Aligned_cols=158 Identities=14% Similarity=0.079 Sum_probs=76.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036303 93 GLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVE 172 (605)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 172 (605)
...-+++++.+.++.+.-.-. +.-+....+.++..+-+.|-.+.|+++...-. .-.....+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 334456666655555411100 01123445666666666676666666533321 12344556666666
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 173 AESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAK 252 (605)
Q Consensus 173 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (605)
|.++.++.. +...|..|.....+.|+++-|.+.|.+.. -+..|+-.|...|+.+.-.++.+....
T Consensus 337 A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 665443322 44567777777777777777776666532 244555556666666666666655554
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 253 FGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSE 284 (605)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 284 (605)
.| -++....++.-.|+.++..+++.+
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43 123333344445666666555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.41 E-value=2.1 Score=39.22 Aligned_cols=163 Identities=7% Similarity=-0.005 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHH
Q 036303 401 VFTALIDGLSKDGNMK---ETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYA 477 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (605)
++..++.+|...+..+ +|..+++.+... .+..+.++..-+..+.+.++.+++.+.+.+++... .-....+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-----~~~e~~~~ 159 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-----DHSESNFD 159 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-----ccccchHH
Confidence 4445556666555443 344444444332 22233444344555555667777777777777643 11222233
Q ss_pred HHHHHH---HccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH----HHHHhcCC------HHHHHHHHHHHHH---CCCC
Q 036303 478 AIIQAL---CYDGQILKASKLFSDMRSDNLRPDNC-TYTTML----RGLLRAKR------MLDVMMLLADMIK---MGIV 540 (605)
Q Consensus 478 ~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~----~~~~~~g~------~~~A~~~~~~~~~---~~~~ 540 (605)
..+..+ .. .....|...+..++...+.|... ....++ ......++ .+....+++...+ ..+.
T Consensus 160 ~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 160 SILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 333332 22 23345555555555433444432 111111 11112111 3333334443222 2222
Q ss_pred ccH-HHH----HHHHHHHHhcCChhHHHHHHHHHH
Q 036303 541 PDA-VIN----QVMVRGYQENGDLKSAFRCSEFLK 570 (605)
Q Consensus 541 ~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~ 570 (605)
+.. ... -.-+..+.+.++|++|..+|+-..
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 221 111 223556788999999999998665
|
It is also involved in sporulation []. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=2.6 Score=40.24 Aligned_cols=122 Identities=11% Similarity=0.013 Sum_probs=77.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036303 95 IKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAE 174 (605)
Q Consensus 95 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (605)
...|+.-.|-+-+...+.. .+.++.............|+++.+...+...... +.....+...+++...+.|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3457776665544444433 2223433333344566688888888887766543 2234566777888888889999998
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCC
Q 036303 175 SMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHN 219 (605)
Q Consensus 175 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 219 (605)
..-+.|....++ +...........-..|-++++.-.++++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888888876665 44444333334445677888888888877654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.049 Score=48.77 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=51.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 036303 441 IHGLFKNGRISNALNFFLEKTDKTDGGYCSP-NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGL 518 (605)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 518 (605)
+..|.++|.+++|+..|...+. ..| |++.+..-..+|.+...+..|+.-.+.++.. ... ...|..-+.+-
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHH
Confidence 5556677777777777766553 444 5666666666677766666666666665541 111 11333333333
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcc
Q 036303 519 LRAKRMLDVMMLLADMIKMGIVPD 542 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~~~~ 542 (605)
...|...+|.+-++..++ ++|+
T Consensus 176 ~~Lg~~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHhhHHHHHHhHHHHHh--hCcc
Confidence 344566666666665555 4454
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.31 Score=37.88 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH
Q 036303 429 KITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC 484 (605)
Q Consensus 429 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 484 (605)
...|+..++.+++.+|+..|++..|+++.+...+.++ ++-+...|..++.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~---I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP---IPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH
Confidence 3567888888888888888888888888888888776 4555677777765443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.08 E-value=2.7 Score=38.55 Aligned_cols=101 Identities=12% Similarity=0.063 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 036303 331 TYNSLIDGYCKEGDME---KALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALID 407 (605)
Q Consensus 331 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 407 (605)
++..++.+|...+..+ +|..+++.+.... +..+..+..-+..+.+.++.+.+.+.+.+|+..-.. ....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 4566677777666544 4555555554442 223444545566666677888888888888776221 2223333333
Q ss_pred HH---HhcCCHHHHHHHHHHHHHCCCCCCH
Q 036303 408 GL---SKDGNMKETLRLYKEMLEAKITPSV 434 (605)
Q Consensus 408 ~~---~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (605)
.+ .. .....+...+..++...+.|..
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 33 23 2345566666666554444444
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.07 E-value=4.1 Score=40.59 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=70.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHhcCCHHH
Q 036303 342 EGDMEKALSVCSQMTEKGVEPNVVTFS-SLIDGQCKAGNIDAAMGLYTEMVIKS---LVPDVVVFTALIDGLSKDGNMKE 417 (605)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 417 (605)
..+.+.|.+++..+... -|+...|. .-.+.+...|++++|++.|++..... .+.....+..++..+.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34567777777777776 34444333 33456666788888888887655321 01123344455666677788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHhhh
Q 036303 418 TLRLYKEMLEAKITPSVFTVSSLIH-GLFKNGRI-------SNALNFFLEKTD 462 (605)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~~~~ 462 (605)
|...|..+.+.. ..+...|..+.. ++...|+. ++|.++|.++..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888887754 334444443333 34456666 677777766544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.57 E-value=1.2 Score=37.27 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHH--HH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDV--VVFTALIDGLSKDGNMKETLRLYKEMLEAKIT-PSVFTVS--SL 440 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~--~l 440 (605)
.+..+...|.+.|+.+.|++.|.++......+.. ..+..++......+++..+.....+....--. .+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3455566666666666666666666554333222 23445556666666666666666555432111 1111111 11
Q ss_pred --HHHHHhcCCHHHHHHHHHHhhhcc
Q 036303 441 --IHGLFKNGRISNALNFFLEKTDKT 464 (605)
Q Consensus 441 --~~~~~~~g~~~~A~~~~~~~~~~~ 464 (605)
+-.+...+++.+|-+.|-+.....
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCcCC
Confidence 122345677777777777665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=94.44 E-value=7.3 Score=40.56 Aligned_cols=195 Identities=10% Similarity=0.024 Sum_probs=95.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCC-----HhhHHHHHH--HHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHH
Q 036303 375 CKAGNIDAAMGLYTEMVIKSL-VPD-----VVVFTALID--GLSKDGNMKETLRLYK--------EMLEAKITPSVFTVS 438 (605)
Q Consensus 375 ~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l~~--~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~ 438 (605)
+-.+++..|...+..+....- .|+ ...+..++. .+-..|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 346889899988888875421 111 122222232 2446799999999997 333444333333333
Q ss_pred HH--HHHHHhcCC--HHH--HHHHHHHhhhccCCCCCCccHHHHHHHH-HHHHcc--CCHHHHHHHHHHHHhCC--CCCC
Q 036303 439 SL--IHGLFKNGR--ISN--ALNFFLEKTDKTDGGYCSPNHVLYAAII-QALCYD--GQILKASKLFSDMRSDN--LRPD 507 (605)
Q Consensus 439 ~l--~~~~~~~g~--~~~--A~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~--g~~~~A~~~~~~~~~~~--~~p~ 507 (605)
.+ +..+...+. ..+ +-++++.+....... ...+..++..++ .++... -...++...+.+..+.- ...+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n 530 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNS-PNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN 530 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCC-ccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc
Confidence 22 222222222 222 666666554432111 122333444433 333211 12235555544433311 1112
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-Cc--cHHHHH-----HHHHHHHhcCChhHHHHHHHHHHh
Q 036303 508 NC----TYTTMLRGLLRAKRMLDVMMLLADMIKMGI-VP--DAVINQ-----VMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 508 ~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
.. +++.+...+. .|+..+............. .| ....|. .+.+.|...|+.++|.....+...
T Consensus 531 ~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 531 SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 21 2222333333 6787776666555442111 12 344452 345568889999999988877654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=94.44 E-value=7.3 Score=40.56 Aligned_cols=196 Identities=15% Similarity=0.039 Sum_probs=95.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCC-CcC-------HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHhhHH
Q 036303 340 CKEGDMEKALSVCSQMTEKGV-EPN-------VVTFSSLIDGQCKAGNIDAAMGLYT--------EMVIKSLVPDVVVFT 403 (605)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~ 403 (605)
+-.+++..|...++.+..... .|+ +..+...+-.+-..|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 457889899999988876421 111 2222333334445799999999997 333444333333333
Q ss_pred H--HHHHHHhcC--CHHH--HHHHHHHHHHC-CCCCC--HHHHHHHH-HHHHh--cCCHHHHHHHHHHhhhcc-CCCCCC
Q 036303 404 A--LIDGLSKDG--NMKE--TLRLYKEMLEA-KITPS--VFTVSSLI-HGLFK--NGRISNALNFFLEKTDKT-DGGYCS 470 (605)
Q Consensus 404 ~--l~~~~~~~g--~~~~--a~~~~~~~~~~-~~~~~--~~~~~~l~-~~~~~--~g~~~~A~~~~~~~~~~~-~~~~~~ 470 (605)
. ++..+...+ ...+ ...+++.+... .-.|+ ..++..++ .++.. .-...++...+.+.++.. ...+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 2 112222222 2223 66666655432 11222 22333333 22221 112236666665555543 111111
Q ss_pred cc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCH--HHHHH-----HHHHHHhcCCHHHHHHHHHHHHH
Q 036303 471 PN-HVLYAAIIQALCYDGQILKASKLFSDMRSD-NLRPDN--CTYTT-----MLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 471 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~--~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.- ..+++.+...+. .|+..+..+........ ...||. ..|.. +.+.+...|+.++|.....+...
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 11 122333333333 67777766665554331 112332 24533 33446678999999888776543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=5.6 Score=38.49 Aligned_cols=99 Identities=9% Similarity=0.029 Sum_probs=71.2
Q ss_pred CccHHHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH-HCCCCccHHH
Q 036303 470 SPNHVLY-AAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLL--RAKRMLDVMMLLADMI-KMGIVPDAVI 545 (605)
Q Consensus 470 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~-~~~~~~~~~~ 545 (605)
.++..++ +.++..+.+.|-.++|.+.+.++... .+|+...|..+++.-. ...+...+.++++.|. ..| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4555544 46677788889999999999999883 2445667777776433 2345888899999988 566 56777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 546 NQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
|-.....=...|..+.+-.++-++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 76666555588888888887666654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.13 E-value=3 Score=34.82 Aligned_cols=92 Identities=12% Similarity=0.078 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCCHHH-----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 036303 56 STLIIAFSEMGHIEEALWVYRKIEVLPAIQA-----CNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCC 130 (605)
Q Consensus 56 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (605)
..++..+...|++++|..-++.....+.... -..|.+.....|.+++|..+++.....+. .......-...+.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 4566677778888888877776532222222 23455666677777777777776654321 2233444556677
Q ss_pred ccCChhHHHHHHHHHHhCC
Q 036303 131 GQGDVMKALNLFDEMIDKG 149 (605)
Q Consensus 131 ~~g~~~~a~~~~~~~~~~~ 149 (605)
..|+-++|+.-|+..++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777777663
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.06 E-value=16 Score=42.96 Aligned_cols=367 Identities=12% Similarity=0.048 Sum_probs=185.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 036303 194 ALMDGYCKVADVNRALEFYHEMLHHN--LQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCK 271 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (605)
.+..+-.+++.+.+|+..++.-.... .......+..+...|+..+++|...-+...... .|+ . ...+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--L-YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--H-HHHHHHHHh
Confidence 45556678899999999998731110 011233455555699999999988877764221 122 2 334556778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 036303 272 AGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSL-IDGYCKEGDMEKALS 350 (605)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~ 350 (605)
.|++..|...|+.+.+.+ ++....++.++......|.+.......+-..... .+....++.+ +.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 999999999999999876 3446678888887778888888887666655442 2233333332 333456677777666
Q ss_pred HHHHHhhCCCCcCHHHHHH--HHHHHHhcC--CHHHHHHHHHHHHHCCCCC---------CHhhHHHHHHHHHhcCCHHH
Q 036303 351 VCSQMTEKGVEPNVVTFSS--LIDGQCKAG--NIDAAMGLYTEMVIKSLVP---------DVVVFTALIDGLSKDGNMKE 417 (605)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~~--~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~ 417 (605)
... .. +..+|.. ++....+.. +.-.-.+..+.+...-+.| -...|..++....-.. .+.
T Consensus 1540 ~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~ 1611 (2382)
T KOG0890|consen 1540 YLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LEN 1611 (2382)
T ss_pred hhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHH
Confidence 554 11 1222222 222222221 1111111222221110000 0112222222211110 000
Q ss_pred HHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHhhh-ccCCCCC-CccHHHHHHHHHHHHccCCH
Q 036303 418 TLRLYKEMLEAKITPSVF------TVSSLIHGLFKNGRISNALNFFLEKTD-KTDGGYC-SPNHVLYAAIIQALCYDGQI 489 (605)
Q Consensus 418 a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 489 (605)
..+... +..++.. -|..-+..-....+..+-+--+++..- .....+. ..-..+|....+.....|++
T Consensus 1612 ---~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1612 ---SIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred ---HHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 001111 1111111 111111111111122222222221111 1111011 22245666777777778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-------cHH-----H----HHHHHHHH
Q 036303 490 LKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-------DAV-----I----NQVMVRGY 553 (605)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~-----~----~~~l~~~~ 553 (605)
+.|...+=.+.+.+ -+..+...+.-....|+...|+.+++..++...+. .+. + ...+..-.
T Consensus 1687 q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~ 1763 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYL 1763 (2382)
T ss_pred HHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHH
Confidence 88888877776643 23345566777778888889988888877432111 111 1 11222223
Q ss_pred HhcCCh--hHHHHHHHHHHhcCCCCCCCCccch
Q 036303 554 QENGDL--KSAFRCSEFLKESRIGSSETEGHTT 584 (605)
Q Consensus 554 ~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~ 584 (605)
...|+. +.-.+.|..+.+..|+.+..+.+.+
T Consensus 1764 ~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1764 EESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 344442 3445678888888887777777666
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.45 Score=40.72 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHH
Q 036303 487 GQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
.+++.|+..+.+++. +.|+.. .|..-+..+.+..+++.+..--.++++ +.|+ ......++..+.....+++|+.
T Consensus 24 k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHH
Confidence 344444444444443 344442 233333344444444444444444443 3343 3344444445555555555555
Q ss_pred HHHHHHhcCCCCCCCCccchhhhhh
Q 036303 565 CSEFLKESRIGSSETEGHTTRSFLG 589 (605)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (605)
.+.++..+.-...++....+...|.
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~ 124 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALR 124 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHH
Confidence 5555544433333333333333333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.78 Score=41.48 Aligned_cols=94 Identities=15% Similarity=0.078 Sum_probs=46.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc
Q 036303 406 IDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY 485 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 485 (605)
.+-|.++|.+++|+..|...+... +.++.++..-..+|.+...+..|..-...++... ..-.-+|..-+.+-..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-----~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-----KLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-----HHHHHHHHHHHHHHHH
Confidence 344556666666666666555542 3355555555666666666665555555444321 1112223333333333
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC
Q 036303 486 DGQILKASKLFSDMRSDNLRPD 507 (605)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~ 507 (605)
.|...+|.+-++..++ +.|+
T Consensus 178 Lg~~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HhhHHHHHHhHHHHHh--hCcc
Confidence 4445555555555554 4454
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.96 Score=37.90 Aligned_cols=95 Identities=14% Similarity=0.028 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCccHHH--H
Q 036303 474 VLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC--TYTTMLRGLLRAKRMLDVMMLLADMIKM---GIVPDAVI--N 546 (605)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~--~ 546 (605)
..+..++..|.+.|+.++|.+.+.++.+....|... .+..++..+...+++..+...+.++... |-+++... -
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456677777778888888888888877654444332 5566777777777888777777766532 21222111 1
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 036303 547 QVMVRGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~ 568 (605)
..-+-.+...|++.+|.+.|=.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHc
Confidence 1223345566777777765433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=93.72 E-value=1.4 Score=36.11 Aligned_cols=58 Identities=21% Similarity=0.146 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHccC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 473 HVLYAAIIQALCYDG-----------QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMG 538 (605)
Q Consensus 473 ~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 538 (605)
..++..++.+|...+ .+++|...|+++.+ ..|+...|+.-+..+. +|-++..+..+.+
T Consensus 69 hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 69 HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 455555665554332 25566677777776 7899999988887763 4556666665544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.66 E-value=2.5 Score=40.46 Aligned_cols=114 Identities=12% Similarity=0.097 Sum_probs=72.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhhccCCCC-CCcc---HHHHHHHHHHHHccCCHHHHHHHHHHHHh-------CCCCCCH--
Q 036303 442 HGLFKNGRISNALNFFLEKTDKTDGGY-CSPN---HVLYAAIIQALCYDGQILKASKLFSDMRS-------DNLRPDN-- 508 (605)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~-- 508 (605)
..+.-.|++..|.+++...-......+ ..|. -..||.++..+.+.|.+..+..+|.++++ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 345567888888887765433222111 1221 23356777777788888888888877764 3555532
Q ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 036303 509 --------CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQEN 556 (605)
Q Consensus 509 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 556 (605)
.......-.|.+.|++-.|.+.|.+.... +..++..|..++.+|...
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 12223344566889999999988887742 455788898888887643
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.66 E-value=3.2 Score=33.58 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=8.5
Q ss_pred HHccCChhHHHHHHHHHHh
Q 036303 129 CCGQGDVMKALNLFDEMID 147 (605)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~ 147 (605)
++..|+|.+|+.+|+.+..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3344444444444444433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.59 E-value=3.1 Score=33.30 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=5.6
Q ss_pred HHccCCHHHHHHHHH
Q 036303 483 LCYDGQILKASKLFS 497 (605)
Q Consensus 483 ~~~~g~~~~A~~~~~ 497 (605)
|.+.+.++++.-++.
T Consensus 79 c~~~~l~~~~~~l~~ 93 (140)
T smart00299 79 CEKAKLYEEAVELYK 93 (140)
T ss_pred HHHcCcHHHHHHHHH
Confidence 333333333333333
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.96 Score=39.80 Aligned_cols=105 Identities=12% Similarity=0.113 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHH
Q 036303 81 LPAIQACNALLNGLIK-----KGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVV 155 (605)
Q Consensus 81 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 155 (605)
..+-.+|...+..+.. .+..+-.-..+..|...|+.-|..+|+.|++.+-+-.- -| ..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP-~n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IP-QN 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------cc-HH
Confidence 3455566666665543 34455555666777777777777777777766533211 11 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC
Q 036303 156 IYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVAD 204 (605)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 204 (605)
.+....--|- .+.+=+++++++|...|+.||..+-..++.++.+.+-
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111111 1223467788888888888888888888888776654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.33 E-value=7.8 Score=37.08 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=34.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036303 300 LIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEK 358 (605)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 358 (605)
...+.-+.|+++............ .++...+..+... ..++++++....+.+...
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 355677888888855555554432 2344455555433 778888888887776653
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.32 E-value=3.5 Score=33.02 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=15.1
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 036303 196 MDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLC 235 (605)
Q Consensus 196 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (605)
+..+...+.+.....+++.+...+ ..+....+.++..|+
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~ 52 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYA 52 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence 333333334444444444443333 123333344444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.21 Score=28.09 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=12.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
|..++.++...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.26 Score=28.26 Aligned_cols=27 Identities=4% Similarity=-0.015 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+|..|...|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366778888888888888888888553
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=93.02 E-value=1 Score=36.97 Aligned_cols=95 Identities=11% Similarity=-0.020 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc---CC-------HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHH
Q 036303 450 ISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD---GQ-------ILKASKLFSDMRSDNLRPDNC-TYTTMLRGL 518 (605)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~-------~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~ 518 (605)
++.|++.++...... +.|...++..+.++... .. +++|+.-|++++. +.|+.. ++..+..++
T Consensus 7 FE~ark~aea~y~~n-----P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ 79 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-----PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAY 79 (186)
T ss_dssp HHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHH
Confidence 345555555544443 44555555544444322 22 3455666666666 788865 788888887
Q ss_pred HhcC-----------CHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 036303 519 LRAK-----------RMLDVMMLLADMIKMGIVPDAVINQVMVRGY 553 (605)
Q Consensus 519 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 553 (605)
...+ .+++|...|+++.. .+|+...|..-....
T Consensus 80 ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 80 TSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 7432 25556666666665 678888887765554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.94 E-value=12 Score=38.25 Aligned_cols=344 Identities=13% Similarity=0.082 Sum_probs=179.5
Q ss_pred CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC--hHHHHHHHHHHHhCCCC
Q 036303 149 GIEPTVVIYT-----ILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVAD--VNRALEFYHEMLHHNLQ 221 (605)
Q Consensus 149 ~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 221 (605)
|++.+..-|. .++..+...+.+..|+++-..+...-.. ....|......+.+..+ -+++++.+++=++...
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~- 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL- 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-
Confidence 5666655554 3556667778888888887776543222 14555566666665532 2344444444333222
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 036303 222 PNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVF----PNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTY 297 (605)
Q Consensus 222 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 297 (605)
.....|..++......|+.+.|..+++.=...+.. .+..-+...+.-....|+.+-...++-.+... .....+
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH
Confidence 34556777887777888888888877643221100 01111222233333444444444444443321 111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHhhC-CCCcCHHHHHHHHHHHH
Q 036303 298 NILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVC-SQMTEK-GVEPNVVTFSSLIDGQC 375 (605)
Q Consensus 298 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~-~~~~~~~~~~~l~~~~~ 375 (605)
+....+...|..++.+..+.. |..+ +-..|-...+...+..+. +..... -+.+-..........+.
T Consensus 582 ------~~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a 649 (829)
T KOG2280|consen 582 ------FMTLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFA 649 (829)
T ss_pred ------HHHHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHh
Confidence 111123344555555554431 1111 111122222222211111 110000 01111122223333444
Q ss_pred hcCCHH----------HHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036303 376 KAGNID----------AAMGLYTEMVIK-SLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGL 444 (605)
Q Consensus 376 ~~~~~~----------~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 444 (605)
+..... +-+.+.+.+... +......+.+.-+.-+...|+..+|.++-.+.. -|+...|..-+.++
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aL 725 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTAL 725 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHH
Confidence 333211 112222222221 222233345555666778899999988877664 57888888888899
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 445 FKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRM 524 (605)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 524 (605)
+..+++++-.++-++. ..+..|.-...+|.+.|+.++|.+++-+.. +.. ..+.+|.+.|++
T Consensus 726 a~~~kweeLekfAksk----------ksPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~ 786 (829)
T KOG2280|consen 726 ADIKKWEELEKFAKSK----------KSPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDV 786 (829)
T ss_pred HhhhhHHHHHHHHhcc----------CCCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccH
Confidence 9999999877766543 224557778889999999999999987653 222 567789999999
Q ss_pred HHHHHHHH
Q 036303 525 LDVMMLLA 532 (605)
Q Consensus 525 ~~A~~~~~ 532 (605)
.+|.+..-
T Consensus 787 ~eAad~A~ 794 (829)
T KOG2280|consen 787 KEAADLAA 794 (829)
T ss_pred HHHHHHHH
Confidence 99987643
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.91 E-value=13 Score=38.57 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=21.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc
Q 036303 160 LIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKV 202 (605)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 202 (605)
++-.+.++|++++|.++....... .......+...+..|...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 344556666666666666443332 222344555555555543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.77 E-value=3.6 Score=31.75 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=22.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 336 IDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKS 394 (605)
Q Consensus 336 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 394 (605)
+......|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33344444444444444444332 13344444444444444444444444444444443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.72 E-value=1.6 Score=41.65 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=78.9
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 446 KNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRML 525 (605)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 525 (605)
..|+...|-+-+...+...+ ..|+... .....+...|+++.+...+...... +.....+...+++.....|+++
T Consensus 301 ~~gd~~aas~~~~~~lr~~~---~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQ---QDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred hccCHHHHHHHHHHHHHhCC---CCchhhH--HHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 45666666555555555432 1333322 2333455668888888777655442 3344556777777777888888
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 526 DVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 526 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
+|....+.|+...++ ++++....+..-...|-++++...|+++..++|+..
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 888888777754443 555555555555667788888888888888877543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.91 Score=39.95 Aligned_cols=115 Identities=14% Similarity=0.187 Sum_probs=74.4
Q ss_pred CHHhHHHHHHHHHc-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 036303 118 DVVTYGVLIDCCCG-----QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTY 192 (605)
Q Consensus 118 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 192 (605)
|-.+|...+..+.. .+.++=.-..+..|.+.|+..|..+|+.|++++-+-.-... .+|+.
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~------------- 130 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQK------------- 130 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHH-------------
Confidence 55566666655543 35566666677788888888888888888877654332111 11111
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH-HHHHHHHHHH
Q 036303 193 NALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELR-AAGNFFVHMA 251 (605)
Q Consensus 193 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~ 251 (605)
....|- .+-+-++.++++|...|+.||..+-..++.++.+.+..- +..++.--|.
T Consensus 131 --~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 --VFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred --HHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 111111 223567899999999999999999999999998887643 3334443443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.28 Score=31.02 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 545 INQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
....++-++.+.|++++|++..+.+++..|++...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 44566777888888888888888888888876543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.29 Score=27.41 Aligned_cols=25 Identities=20% Similarity=0.064 Sum_probs=11.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
..+..++...|++++|++.|+++++
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444444444444444444444444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.17 Score=28.60 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHH
Q 036303 431 TPSVFTVSSLIHGLFKNGRISNA 453 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A 453 (605)
|.+..++..++..+...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444444444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.38 E-value=1.7 Score=39.00 Aligned_cols=76 Identities=12% Similarity=0.189 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS-----DNLRPDNCTY 511 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 511 (605)
+..++..+...|+.+.+.+.+++.+... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-----p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-----PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-----ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3444445555555555555555555543 44455555555555555555555555555443 3555555544
Q ss_pred HHHHHH
Q 036303 512 TTMLRG 517 (605)
Q Consensus 512 ~~l~~~ 517 (605)
..+..+
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 443333
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.30 E-value=15 Score=37.68 Aligned_cols=178 Identities=17% Similarity=0.055 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhc
Q 036303 240 LRAAGNFFVHMAKFGVFPNIFVYNCLIDG-----HCKAGNLFEAMSLCSEMEK-------FEISPDVFTYNILIKGLCGV 307 (605)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 307 (605)
...+.++++...+.| +......+..+ +....+.+.|+..|+.+.+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456667777766654 22222222222 2345677778777777755 43 233445566666553
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----c
Q 036303 308 G-----QLEGAEGLLQKMYKEGILANVVTYNSLIDGYCK-EGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK----A 377 (605)
Q Consensus 308 ~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 377 (605)
. +.+.|..++.+....| .|+.......+..... ..+...|.++|..+...|.. ..+..+..+|.. .
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 2 5667888888887776 3344333222222222 24567888888888887643 222223333322 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 378 GNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAK 429 (605)
Q Consensus 378 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 429 (605)
.+...|..++.+....+ .|........+..+.. ++++.+.-.+..+.+.+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 46788888888888776 3222222222333333 66777776666666655
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.25 E-value=5.3 Score=32.37 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=50.7
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCCCccHHHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036303 445 FKNGRISNALNFFLEKTDKTDGGYCSPNHVLY-AAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKR 523 (605)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 523 (605)
...++.+++..++..+.-- .|..... ..-...++..|++.+|+.+|+++.+. .|....-..|+..|....+
T Consensus 21 l~~~~~~D~e~lL~ALrvL------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALG 92 (160)
T ss_pred HccCChHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcC
Confidence 4556666776666665543 3332222 22234456677777777777776652 2333333344444433222
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 036303 524 MLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 524 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
-..=...-..+++.+-.|+. ..+++.+....+...|..
T Consensus 93 D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred ChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 12222223334443333322 224444444444444443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.24 E-value=7 Score=33.74 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=11.2
Q ss_pred hhcCCchHHHHHHHHHHHH
Q 036303 6 ANAKLYKNARCLIKDVTEN 24 (605)
Q Consensus 6 ~~~~~~~~a~~~~~~l~~~ 24 (605)
..++++.+|-.++.+....
T Consensus 25 gg~~k~eeAadl~~~Aan~ 43 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANM 43 (288)
T ss_pred CCCcchHHHHHHHHHHHHH
Confidence 3445666666666666543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.27 Score=26.79 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 544 VINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
.++..++.++...|++++|...++.+.+.+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35667777888888888888888888777664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.83 E-value=4.9 Score=31.09 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=23.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 480 IQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMG 538 (605)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 538 (605)
+..+..+|+-+.-.+++..+.+ +-.+++.....+..+|.+.|+..++-+++.++.+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444444444444444432 123444444444444444455444444444444444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.70 E-value=2.1 Score=33.11 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCc--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 505 RPDNCTYTTMLRGLLRAK---RMLDVMMLLADMIKMGIVP--DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
.++..+-..+.+++.+.. +.++.+.+++...+. -.| .......|+-.+.+.|+|+.++++.+.+.+..|++..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 456667778888888764 456677788888862 233 35666778888999999999999999999988887644
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.62 E-value=2.5 Score=38.02 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-ccCCCCCCccHHHH
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTD-KTDGGYCSPNHVLY 476 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~ 476 (605)
++..++..+...|+.+.+...+++++... +-+...+..++.+|.+.|+...|+..|+.+.+ .....|+.|.+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34455555566666666666666666554 44555666666666666666666666665554 22233445544443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.48 Score=28.07 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 543 AVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
..++..++.+|...|++++|..+++++.+..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4567888999999999999999988887653
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.35 E-value=14 Score=35.36 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVP---DVVVFTALIDGLSKDGNMKETLRLYKEMLE 427 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 427 (605)
...++..++..+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|+..++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777777788888888888777777643111 233444445556677777888877777766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.30 E-value=9.8 Score=33.54 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC----CC-------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH
Q 036303 369 SLIDGQCKAGNIDAAMGLYTEMVIKSLV----PD-------VVVFTALIDGLSKDGNMKETLRLYKEMLEAK-ITPSVFT 436 (605)
Q Consensus 369 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~ 436 (605)
.+...|...+.+..-.++++++...... .| ...|..-++.|....+-.....+|++.+... --|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 3455555555565555555555432110 01 1244445566666666666667777665321 1233333
Q ss_pred HHHH----HHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHH--HHHHHHHHccC
Q 036303 437 VSSL----IHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLY--AAIIQALCYDG 487 (605)
Q Consensus 437 ~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g 487 (605)
...+ +.+..+.|++++|-.-|-++.+.+..+|.+....++ ..+...+.++|
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 3222 122346677887776666666666666654444433 33334444433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.11 E-value=6.6 Score=31.24 Aligned_cols=51 Identities=6% Similarity=-0.108 Sum_probs=22.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 036303 97 KGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 148 (605)
.++++++..+++.|.-..+. ....-..-...+...|+|++|..+|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555443221 1111112223344455555555555555544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.90 E-value=24 Score=37.22 Aligned_cols=226 Identities=15% Similarity=0.090 Sum_probs=114.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHhhCC----CCcCHHHHHHHH
Q 036303 304 LCGVGQLEGAEGLLQKMYKEGILANV-------VTYNSLID-GYCKEGDMEKALSVCSQMTEKG----VEPNVVTFSSLI 371 (605)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~ 371 (605)
.....++++|..++.++...-..|+. ..++.+-. .....|+++.|.++.+.....= ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888887654222222 12333322 2345788888888888777651 122345566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhh---HHHHH--HHHHhcCCHH--HHHHHHHHHHHC---CCCC---CHHHHH
Q 036303 372 DGQCKAGNIDAAMGLYTEMVIKSLVPDVVV---FTALI--DGLSKDGNMK--ETLRLYKEMLEA---KITP---SVFTVS 438 (605)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~g~~~--~a~~~~~~~~~~---~~~~---~~~~~~ 438 (605)
.+..-.|++++|..+..+..+..-.-+... +..+. ..+...|+.. +....+...... ..+. -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777778999999888877665422223322 22222 2345566322 222233222221 1111 122333
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHhhhccCCCCCCccHHHH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCC----CHHHH
Q 036303 439 SLIHGLFK-NGRISNALNFFLEKTDKTDGGYCSPNHVLY--AAIIQALCYDGQILKASKLFSDMRSDNLRP----DNCTY 511 (605)
Q Consensus 439 ~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~ 511 (605)
.+..++.+ .+...++..-+.-..... ..|-...+ ..++.+....|+.++|...++++......+ +..+-
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~----~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYT----PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcc----cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 44444443 122222222222211111 12222222 366777888899999998888887643222 22232
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHH
Q 036303 512 TTMLRGLL--RAKRMLDVMMLLAD 533 (605)
Q Consensus 512 ~~l~~~~~--~~g~~~~A~~~~~~ 533 (605)
...+.... ..|+..++.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 23333222 46777777665543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.79 E-value=13 Score=34.20 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 036303 490 LKASKLFSDMRSDNLRPDNC--TYTTMLRGLLRAKR--MLDVMMLLADMIKMGIVPDAVINQVMVR 551 (605)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 551 (605)
+.++.+|+.+.+.|+..+.. ....++..+..... ...+..+++.+.+.|+++....|..++-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 34555555555555544332 22222222211111 3345555555666666555544554443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.36 E-value=26 Score=36.89 Aligned_cols=229 Identities=13% Similarity=0.062 Sum_probs=124.7
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCH-------HHHHHH-HHHHHhcCCHHHHHHHHHHHHHC----CCCCCHhhHHHHHH
Q 036303 340 CKEGDMEKALSVCSQMTEKGVEPNV-------VTFSSL-IDGQCKAGNIDAAMGLYTEMVIK----SLVPDVVVFTALID 407 (605)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 407 (605)
....++++|..+..++...-..|+. ..+..+ .......|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4577899999998887665222221 122222 22334578999999998887765 12234556677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHH--HHHHHhcCCHH--HHHHHHHHhhhccCCCC--CCccHHHHHH
Q 036303 408 GLSKDGNMKETLRLYKEMLEAKITPSVF---TVSSL--IHGLFKNGRIS--NALNFFLEKTDKTDGGY--CSPNHVLYAA 478 (605)
Q Consensus 408 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l--~~~~~~~g~~~--~A~~~~~~~~~~~~~~~--~~~~~~~~~~ 478 (605)
+..-.|++++|..+..+..+..-.-+.. .+..+ ...+..+|+.. +....|........... ..+-......
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888899999999887776542222322 23333 23356677433 33333333222110000 0112233444
Q ss_pred HHHHHHc-cCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc----cHHHHHHHH-
Q 036303 479 IIQALCY-DGQILKASKLFSDMRSDNLRPDNCT--YTTMLRGLLRAKRMLDVMMLLADMIKMGIVP----DAVINQVMV- 550 (605)
Q Consensus 479 l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~- 550 (605)
+..++.+ .+...++..-++--......|-... +..|+......|++++|...+.++......+ +-.+....+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 4555544 2233334333433333222222222 2356777788999999999998887543333 322222222
Q ss_pred -HHHHhcCChhHHHHHHHH
Q 036303 551 -RGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 551 -~~~~~~g~~~~A~~~~~~ 568 (605)
..-...||..+|..+..+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 234567898888877655
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.35 E-value=9 Score=31.51 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=16.0
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 036303 281 LCSEMEKFEISPDVFTYNILIKGLCGVGQLE 311 (605)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (605)
.++.+.+.+++|+...+..++..+.+.|++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3344444455555555555555555555543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.22 E-value=2.1 Score=38.45 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=26.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 134 DVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRE 182 (605)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (605)
+.++++.++..=++.|+-||..+++.+|..+.+.+++.+|.++...|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555544443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.14 E-value=32 Score=37.56 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhcC--CHHHHHHHHHHHH
Q 036303 226 TFGVLMDGLCKVG--ELRAAGNFFVHMA 251 (605)
Q Consensus 226 ~~~~l~~~~~~~~--~~~~a~~~~~~~~ 251 (605)
....++..|.+.+ .++.++.......
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3344555555555 4455554444444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.10 E-value=3.9 Score=34.52 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=52.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCccHHHHHHHHHHHHhcCChhH
Q 036303 485 YDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKM---GIVPDAVINQVMVRGYQENGDLKS 561 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 561 (605)
+.|+ ++|.+.|-++...+.--++..... +..|....+.+++++++-++++. +-.+|+.++..|+..|.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3443 567777777766554444444434 44555577888888888888753 225578888889999999998888
Q ss_pred HH
Q 036303 562 AF 563 (605)
Q Consensus 562 A~ 563 (605)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.01 E-value=15 Score=33.61 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=26.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHH
Q 036303 292 PDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDM----EKALSVCSQM 355 (605)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~ 355 (605)
+|.......+.++...|. +.+...+..+... +|...-...+.++...|+. .++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 444444555555555543 2233333333332 2444444444444444442 3344444444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.94 E-value=25 Score=36.05 Aligned_cols=176 Identities=17% Similarity=0.061 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCCcccHHHHHHHHhcc
Q 036303 135 VMKALNLFDEMIDKGIEPTVVIYTILIHG-----LCNENKMVEAESMFRSMRE-------CGVVPNLYTYNALMDGYCKV 202 (605)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~ 202 (605)
...|.+.++.....| +......+..+ +....+.+.|...|+.... .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456788888777765 33333333333 3345678888888887766 44 333555666666654
Q ss_pred C-----ChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----
Q 036303 203 A-----DVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKV---GELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHC---- 270 (605)
Q Consensus 203 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 270 (605)
. +.+.|+.+|...-..| .|+.. ..+...+..- .+...|.++|..+.+.|. ...+-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCC
Confidence 3 4566777777777665 33333 2333333222 346677788877777663 222222222222
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 271 KAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEG 324 (605)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 324 (605)
...+...|..++++..+.|. |...--...+..+.. +.++.+...+..+...+
T Consensus 376 v~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred cCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 23366777777777777652 221111122222223 55666665555555544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.47 Score=24.70 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 036303 545 INQVMVRGYQENGDLKSAFRCSE 567 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~ 567 (605)
....++.++...|+.++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34566777777777777777654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.25 E-value=38 Score=37.09 Aligned_cols=126 Identities=12% Similarity=0.130 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC------CCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHH--hHHHH
Q 036303 55 FSTLIIAFSEMGHIEEALWVYRKIEV------LPAIQACNALLNGLIKK-GKFDSVWEFYEEMVLCGLVADVV--TYGVL 125 (605)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~--~~~~l 125 (605)
-...++-+++.+++.+|.++.++... ..+...+..-+.++.++ ++.+-...++-.+...++.-+.. ++..-
T Consensus 680 VLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~ 759 (1265)
T KOG1920|consen 680 VLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSG 759 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhcccccccc
Confidence 34667778888999999999887631 22344555555555554 33343333333333221111000 01111
Q ss_pred HHHHHccC----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 036303 126 IDCCCGQG----DVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNEN--KMVEAESMFRSMRE 182 (605)
Q Consensus 126 ~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 182 (605)
...|.... .++...+.+....... .|+ .-...++..|.+.+ .++.++....+...
T Consensus 760 k~~~~~r~~~d~kv~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 760 KQVYMSRDPYDNKVNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred ceeEEeccchhhHHHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 11221111 2233333333333332 444 44456777888877 66777776666654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.7 Score=24.04 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYR 76 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~ 76 (605)
+...++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44556666777777777776654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=89.10 E-value=7 Score=33.98 Aligned_cols=89 Identities=9% Similarity=-0.002 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHCCCCc-----cHHHHHH
Q 036303 487 GQILKASKLFSDMRS----DNLRPD--NCTYTTMLRGLLRAKRML-------DVMMLLADMIKMGIVP-----DAVINQV 548 (605)
Q Consensus 487 g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~~-----~~~~~~~ 548 (605)
..+++|++.+.-+.- .+.+|. ...+..+.+.|...|+.+ .|.+.|++..+..-.| +..+...
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 345555555544332 123333 235667777777777744 4555555555332221 2567778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 549 MVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
++....+.|++++|.+++.++....-.
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 899999999999999999999875433
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.05 E-value=1.3 Score=31.81 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 488 QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
+.=++.+-+..+....+.|++.+....+.+|.+.+|+..|.++++-..
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344666666666666777777777777777777777777777777655
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.01 E-value=6.9 Score=33.10 Aligned_cols=73 Identities=15% Similarity=0.024 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCcccHHHHHHHHhccCChHHHH
Q 036303 136 MKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMREC---GVVPNLYTYNALMDGYCKVADVNRAL 209 (605)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~ 209 (605)
+.|+..|-.+...+.--++.....|+..|. ..+.+++..++....+. +-.+|+..+..|+..+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566666666666554434555555544444 56677777777666554 22456677777777777777777663
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.95 E-value=4.1 Score=29.44 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 526 DVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 526 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
++.+-+..+....+.|++.+.....++|.+.+|+.-|.++++-++.+-
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~ 72 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC 72 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 455556666666777777777777788888888888888887777543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.78 E-value=0.61 Score=44.46 Aligned_cols=86 Identities=15% Similarity=0.092 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHH
Q 036303 487 GQILKASKLFSDMRSDNLRPDNCT-YTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
++++.|+.++.++++ +.||... |..-..++.+.+++..|+.-+.++++ ..|+ ...|..-+.++.+.+++.+|+.
T Consensus 18 ~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred chHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHHHHHHHHH
Confidence 344444444444444 3343332 22222334444444444444444443 2232 3344444444444444444444
Q ss_pred HHHHHHhcCCCC
Q 036303 565 CSEFLKESRIGS 576 (605)
Q Consensus 565 ~~~~~~~~~~~~ 576 (605)
.+++.....|++
T Consensus 94 ~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 94 DLEKVKKLAPND 105 (476)
T ss_pred HHHHhhhcCcCc
Confidence 444444444443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.61 E-value=9.6 Score=33.07 Aligned_cols=83 Identities=13% Similarity=-0.011 Sum_probs=39.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHH-HHHHHHHHHcc
Q 036303 409 LSKDGNMKETLRLYKEMLEAKITPSV-FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVL-YAAIIQALCYD 486 (605)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 486 (605)
|.....++.|+..|.+.+.. .|+. .-|..-+.++.+..+++.+..--.++++ +.||... -..+..+....
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq------l~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ------LDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh------cChHHHHHHHHHHHHHHhh
Confidence 33444555555555555543 3333 2333444445555555555554444444 2343322 22333444445
Q ss_pred CCHHHHHHHHHHH
Q 036303 487 GQILKASKLFSDM 499 (605)
Q Consensus 487 g~~~~A~~~~~~~ 499 (605)
..+++|+..+.++
T Consensus 92 ~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 92 KGYDEAIKVLQRA 104 (284)
T ss_pred ccccHHHHHHHHH
Confidence 5555666665555
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.57 E-value=7.8 Score=33.69 Aligned_cols=80 Identities=8% Similarity=-0.028 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCccchhhhhh
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTRSFLG 589 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (605)
.+..+.+++...|++-++++.-...+... +-+..+|..-+++....=+..+|..-+.++++++|.-.++.+..+..+-.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~ 310 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLEN 310 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 34455566667788888888877777632 23678888888888888888888888888888888777666665555444
Q ss_pred c
Q 036303 590 H 590 (605)
Q Consensus 590 ~ 590 (605)
+
T Consensus 311 r 311 (329)
T KOG0545|consen 311 R 311 (329)
T ss_pred H
Confidence 4
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.31 E-value=12 Score=29.96 Aligned_cols=56 Identities=13% Similarity=0.069 Sum_probs=37.9
Q ss_pred HHHHHhcCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036303 59 IIAFSEMGHIEEALWVYRKIE-VLPA-IQACNALLNGLIKKGKFDSVWEFYEEMVLCG 114 (605)
Q Consensus 59 ~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (605)
++.-...++++++..+++.+. ..|+ ...-.--...++..|++.+|+.+|+++...+
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 334455889999999988773 2222 2222223345678999999999999998764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.14 E-value=28 Score=34.15 Aligned_cols=98 Identities=15% Similarity=0.206 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 036303 326 LANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTAL 405 (605)
Q Consensus 326 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 405 (605)
+.|.....+++..+.....+.-...+..+|...| .+...+..++.+|... ..+.-..+|+++.+..+. |.+.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4556666666777776666777777777777654 3556666777777666 455566666666665332 33333334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 036303 406 IDGLSKDGNMKETLRLYKEMLEA 428 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~~~~~ 428 (605)
+..|.+ ++...+..+|.++...
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHH
Confidence 443333 6666666666666654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.88 E-value=0.91 Score=25.33 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=13.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
|..+...|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444455555555555555555544
|
... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.80 E-value=4.6 Score=29.53 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 491 KASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
+..+-+..+....+.|++.+....+.+|.+.+++..|.++++-..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455555555555666666666666666666666666666666554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.74 E-value=0.72 Score=27.80 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=11.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 036303 549 MVRGYQENGDLKSAFRCSEFLK 570 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~~~ 570 (605)
++.+|...|+.+.|+.+++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 4455555555555555555554
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.69 E-value=38 Score=35.18 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=65.6
Q ss_pred HHHHHHhcCChHHHHHHHHhcC-CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 036303 58 LIIAFSEMGHIEEALWVYRKIE-VLP---AIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQG 133 (605)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (605)
-+..+.+.+.+++|+.+-+... ..+ ....+..++..+...|++++|....-.|... +..-|..-+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 4566778888888888887663 222 3456777778888888888888877777654 5566666666666666
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036303 134 DVMKALNLFDEMIDKGIEPTVVIYTILIHGLCN 166 (605)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (605)
+......+ +.......+...|..++..+..
T Consensus 438 ~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 65543332 2222222456677777766665
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.41 E-value=1.1 Score=24.67 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhc
Q 036303 438 SSLIHGLFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 438 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (605)
..++.++.+.|++++|.+.|++++..
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34445555556666666666655554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.33 E-value=23 Score=32.41 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=9.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 036303 549 MVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
.+.++...|+- +|+..+..+.+
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHh
Confidence 33444444442 34444444443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.25 E-value=1 Score=40.95 Aligned_cols=120 Identities=16% Similarity=0.132 Sum_probs=81.0
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC
Q 036303 445 FKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKR 523 (605)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~ 523 (605)
...|.+++|++.|...+... ++....|..-..++.+.+++..|++-+..+.+ +.||.. .|-.-..+-.-.|+
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-----p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-----PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred hcCcchhhhhcccccccccC-----CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhc
Confidence 35677888888888887753 45555666666778888888888888888887 667654 33333334445788
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 524 MLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 524 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
|++|...+....+.++.+... ..+-.+.-..+..++-...+++.++..
T Consensus 198 ~e~aa~dl~~a~kld~dE~~~--a~lKeV~p~a~ki~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYDEANS--ATLKEVFPNAGKIEEHRRKYERAREER 245 (377)
T ss_pred hHHHHHHHHHHHhccccHHHH--HHHHHhccchhhhhhchhHHHHHHHHh
Confidence 999999998888866655433 333445555666666666666665543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.99 E-value=32 Score=33.71 Aligned_cols=53 Identities=15% Similarity=0.067 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 521 AKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 521 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
..+++.|++++-+ ..|...-..+-.-|+..+.-.|+|..=-.-.++..+.+|.
T Consensus 359 rkdpewAikviik--s~~~~nlKeIK~ELVpsli~e~dWnsWsqkAK~ilKk~t~ 411 (711)
T COG1747 359 RKDPEWAIKVIIK--SLGPKNLKEIKQELVPSLIPEGDWNSWSQKAKKILKKSTR 411 (711)
T ss_pred hhChHHHHHHHHH--hcCCccHHHHHHHHHHhhCChhhhhHHHHHHHHHHhcCCc
Confidence 4566777666432 3332222556677777777788776544444455555543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.99 E-value=1.6 Score=25.66 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=13.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+++.+..+|...|++++|..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344555555555555555555555443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.72 E-value=28 Score=32.72 Aligned_cols=30 Identities=17% Similarity=0.064 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 545 INQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
++..+...+..+|-.+.|...++-+.+.+-
T Consensus 156 v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 156 VFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 344555566777888888888888777765
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.47 E-value=7.8 Score=28.40 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 526 DVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 526 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
+..+-+..+....+.|++.+....+++|.+.+|+.-|.++++-++.+-.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~ 78 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK 78 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh
Confidence 444445555566677777777777777777777777777777777654433
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.36 E-value=27 Score=32.23 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhC
Q 036303 275 LFEAMSLCSEMEKF 288 (605)
Q Consensus 275 ~~~a~~~~~~~~~~ 288 (605)
..++..+++.|++.
T Consensus 119 ~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 119 IQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHh
Confidence 34455555555553
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.20 E-value=1.5 Score=37.41 Aligned_cols=66 Identities=12% Similarity=0.000 Sum_probs=53.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCccchh
Q 036303 518 LLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTR 585 (605)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 585 (605)
....++.+.|.+++.+++. +.| ....|..++..-.++|+.+.|.+.|++..+++|++...-.+.+.
T Consensus 5 ~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa 71 (287)
T COG4976 5 LAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLA 71 (287)
T ss_pred hcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHH
Confidence 3467888888899988887 455 58889999999999999999999999999999988766554443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.16 E-value=18 Score=29.85 Aligned_cols=134 Identities=13% Similarity=0.135 Sum_probs=69.3
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 105 EFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECG 184 (605)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (605)
+.++.+.+.+++|+...+..++..+.+.|++.....+ +..++-+|.......+-.+. +....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 4455556667777777777777777777775544443 33333334333332222221 2233344444444432
Q ss_pred CCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 185 VVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAK 252 (605)
Q Consensus 185 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (605)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++....
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113555666777777777777777654321 122234455555555555554444444433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.79 E-value=19 Score=32.67 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=55.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036303 256 FPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFE---ISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTY 332 (605)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 332 (605)
+.+..+...++..-....+++.++..+-.+.... ..++.. -...+..+ ..-++++++.++..=+..|+.||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3444444555555555566666666666654421 011111 11122222 223556666666666666777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036303 333 NSLIDGYCKEGDMEKALSVCSQMTEK 358 (605)
Q Consensus 333 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 358 (605)
+.++..+.+.+++..|..+...|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777666666555443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.29 E-value=31 Score=33.59 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=27.1
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 131 GQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMV 171 (605)
Q Consensus 131 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 171 (605)
..+.++...+.+..+...|.......+|.-...|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 35677777777777777765555556666666666666543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.85 E-value=4.5 Score=34.43 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=49.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc----HHHHHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD----AVINQVMV 550 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~ 550 (605)
.+..+..+.+.+...+|+...+.-++ -+|. ..+-..+++.++-.|+|++|..-++-+.+ +.|+ ...|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHH
Confidence 44556677788888888888877666 3454 34555677788888999998887776665 3343 55566655
Q ss_pred H
Q 036303 551 R 551 (605)
Q Consensus 551 ~ 551 (605)
+
T Consensus 80 r 80 (273)
T COG4455 80 R 80 (273)
T ss_pred H
Confidence 4
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.20 E-value=65 Score=34.68 Aligned_cols=38 Identities=5% Similarity=-0.023 Sum_probs=21.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 036303 163 GLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYC 200 (605)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 200 (605)
.|......+-+..+++.+....-.++....+.++..|+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 34555566666666666665543444455555555554
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.88 E-value=33 Score=30.99 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
++......|...|.+.+|.++.++.+. +.| +...+..++..|...||--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 455566788899999999999999987 455 788899999999999998888888877654
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.84 E-value=29 Score=30.38 Aligned_cols=101 Identities=12% Similarity=0.035 Sum_probs=71.0
Q ss_pred HhhcCCchHHHHHHHHHHHHH---hhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--C
Q 036303 5 LANAKLYKNARCLIKDVTENL---LKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--E 79 (605)
Q Consensus 5 ~~~~~~~~~a~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 79 (605)
|...|+|.+|..-|++.+.++ .-...|.+.-+.-+..+ ..| .+....+++...|++-++++-..++ .
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~-------~tp-LllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKM-------ITP-LLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHh-------hhH-HHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 567889999998888887543 23334554444444443 122 3555667778888888888877776 3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036303 80 VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLC 113 (605)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (605)
.+.++.+|..-..+.+..-+.++|..=|...+..
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 5667888888888888888888888888888775
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.78 E-value=39 Score=31.80 Aligned_cols=122 Identities=9% Similarity=0.074 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 036303 381 DAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFK---NGRISNALNFF 457 (605)
Q Consensus 381 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 457 (605)
+.-+.+++++++.+ +.+......++..+.+..+.+...+.+++++... +.+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455666666653 3455566666666666667777777777777653 3456666655554432 22455666666
Q ss_pred HHhhhccCCCCC--------Cc--cHHH---HHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 036303 458 LEKTDKTDGGYC--------SP--NHVL---YAAIIQALCYDGQILKASKLFSDMRSDNL 504 (605)
Q Consensus 458 ~~~~~~~~~~~~--------~~--~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (605)
.+.+........ .+ .... +..+...+...|..+.|+.+++-+++.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 555443211100 00 1111 22223334578888889988888888554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.74 E-value=46 Score=33.47 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=48.9
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHH
Q 036303 130 CGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRAL 209 (605)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 209 (605)
.+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34566666655544432 444566666666666666666665554432 334444445555544444
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 210 EFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHM 250 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (605)
.+-....+.| ..|.. ..+|...|+++++.+++..-
T Consensus 713 ~la~~~~~~g-~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQG-KNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhc-ccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 4444444433 11211 12234455666655555443
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=82.43 E-value=20 Score=32.05 Aligned_cols=121 Identities=11% Similarity=0.039 Sum_probs=69.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhc----C-----CCCCH-----HH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 036303 57 TLIIAFSEMGHIEEALWVYRKI----E-----VLPAI-----QA--CNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVV 120 (605)
Q Consensus 57 ~l~~~~~~~g~~~~A~~~~~~~----~-----~~~~~-----~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 120 (605)
.-+....-..|+..|++..++- . ..+.. .. ...-|++++..|++.++....-+.-+.--...+.
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpk 119 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK 119 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH
Confidence 4444455567777777776543 0 11111 11 1223577778888888776655544332223345
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHHH
Q 036303 121 TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLC-----NENKMVEAESMF 177 (605)
Q Consensus 121 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~ 177 (605)
+...-|-.|.+.|++..+.++-...++..-..+...|..++..|. -.|.+++|+++.
T Consensus 120 IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 120 ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 666666777888888888888777776522233444655555444 367777777766
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.43 E-value=23 Score=35.44 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=89.4
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 036303 52 PSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG 131 (605)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (605)
-..-+.+++.+-++|..++|+++- ++..- -.....+.|+++.|.++..+.. +..-|..|..+...
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELS------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcC------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 445667778888888888888753 22211 2233456788888877665442 56678888888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHH
Q 036303 132 QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEF 211 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 211 (605)
.|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.. + .+ ..+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-~A----F~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-LA----FLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-hH----HHHHHHcCCHHHHHHH
Confidence 8888888888877653 345666777777777666666666665543 2 22 2345567888888887
Q ss_pred HHHH
Q 036303 212 YHEM 215 (605)
Q Consensus 212 ~~~~ 215 (605)
+.+-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 7654
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=82.40 E-value=4.8 Score=23.03 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChhHHHHH--HHHHHhcCCC
Q 036303 545 INQVMVRGYQENGDLKSAFRC--SEFLKESRIG 575 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~--~~~~~~~~~~ 575 (605)
.+..++-.+...|++++|+.+ ++-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 345667777788888888888 4466666554
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.22 E-value=9.9 Score=34.35 Aligned_cols=64 Identities=14% Similarity=0.050 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.+-.+|.+.++++.|+...+.++. +.| ++.-+.-.+-+|.+.|-+..|..-++...+.-|+++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 334455566666666666666665 334 3444555566666666666666666666666665443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=82.02 E-value=71 Score=33.52 Aligned_cols=49 Identities=8% Similarity=-0.031 Sum_probs=29.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 407 DGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFL 458 (605)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 458 (605)
..+...|....|...+..+... .+......+...-.+.|..+.++....
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 3455667777777777776663 234444555555556666666665554
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=81.63 E-value=73 Score=33.42 Aligned_cols=409 Identities=9% Similarity=-0.024 Sum_probs=198.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 036303 56 STLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIK--KGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQG 133 (605)
Q Consensus 56 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (605)
..-+....+.|++..+..+...+...|- ..|......... ...+++...++++... .+.....-...+..+.+.+
T Consensus 37 f~~A~~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~~~ 113 (644)
T PRK11619 37 YQQIKQAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLMNQPAVQVTNFIRANPT--LPPARSLQSRFVNELARRE 113 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHcc
Confidence 3444556677889998888888854333 233222222222 2245544444443321 1222233344445566677
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHH--HHH
Q 036303 134 DVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRA--LEF 211 (605)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a--~~~ 211 (605)
++...+..+.. .+.+...-...+.+....|+.++|....+.+=..|.. .+...+.++..+.+.|.+... .+=
T Consensus 114 ~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R 187 (644)
T PRK11619 114 DWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLER 187 (644)
T ss_pred CHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHH
Confidence 77776663321 2456666677888888899988887777776554433 566788888888876655443 333
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH---------CCCCCCHhhHHHHHHH--HHhcCCHHHHHH
Q 036303 212 YHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAK---------FGVFPNIFVYNCLIDG--HCKAGNLFEAMS 280 (605)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~l~~~--~~~~~~~~~a~~ 280 (605)
++.+...| +......+..... .+.....+.+..+.. ..++++...-..++.+ -....+.+.|..
T Consensus 188 ~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~ 262 (644)
T PRK11619 188 IRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARL 262 (644)
T ss_pred HHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHH
Confidence 33333333 2222233332220 111111111111111 0111222111111111 123445677777
Q ss_pred HHHHHHhCC-CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036303 281 LCSEMEKFE-ISPDV--FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTE 357 (605)
Q Consensus 281 ~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 357 (605)
.+....... ..+.. ..+..+.......+...++...+....... .+......-+......++++.+...+..|..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~ 340 (644)
T PRK11619 263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPM 340 (644)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCH
Confidence 777764322 21111 122333322333322455666655544332 2344444445555577888888777777655
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH-HHHHHHHHHCCCCCCHHH
Q 036303 358 KGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKET-LRLYKEMLEAKITPSVFT 436 (605)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~ 436 (605)
.. .-...-..-+.+++...|+.++|...|+.+... .+|-.++.+ .+.|..-.- ...... ....+... .
T Consensus 341 ~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa-~~Lg~~~~~~~~~~~~-~~~~~~~~--~ 409 (644)
T PRK11619 341 EA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAA-QRLGEEYPLKIDKAPK-PDSALTQG--P 409 (644)
T ss_pred hh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHH-HHcCCCCCCCCCCCCc-hhhhhccC--h
Confidence 32 223344445667767788888888888876421 123222211 122221000 000000 00000000 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSD 498 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 498 (605)
...-+..+...|+...|...+..+... .+......+.......|.++.++....+
T Consensus 410 ~~~ra~~L~~~g~~~~a~~ew~~~~~~-------~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 410 EMARVRELMYWNMDNTARSEWANLVAS-------RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 122234456778888888888877763 2333344455555567777777665543
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=81.57 E-value=41 Score=30.45 Aligned_cols=125 Identities=15% Similarity=0.093 Sum_probs=58.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHhhhcc-CCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 036303 428 AKITPSVFTVSSLIHGLFKNGRIS-NALNFFLEKTDKT-DGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLR 505 (605)
Q Consensus 428 ~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 505 (605)
.+.+++......++..+...+.-+ +-.++.+.+++.. .+....-++..-..++..|.+.|++.+|+..|=.- -.
T Consensus 43 ~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~ 118 (260)
T PF04190_consen 43 SEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG----TD 118 (260)
T ss_dssp TT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----H
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc----CC
Confidence 344555555555555444433211 2333444444333 11122344555667778888888888888776321 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHH-HHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 506 PDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQ-VMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 506 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
|+...+..++......|.. .+...+. ..+--|...|+...|...++...+.
T Consensus 119 ~~~~~~~~ll~~~~~~~~~----------------~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 119 PSAFAYVMLLEEWSTKGYP----------------SEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHHHHTSS------------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCC----------------cchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2222222233222222322 2333332 2334577788889898888777765
|
; PDB: 3LKU_E 2WPV_G. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.43 E-value=34 Score=29.45 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD----NCTYTTM 514 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l 514 (605)
..+..+.+.+.+.+|+...+.-++.. +.|...-..++..++-.|++++|..-++-+-+ +.|+ ...|..+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-----Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~l 78 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-----PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHL 78 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-----CccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHH
Confidence 33445566677777777777766653 33444455666777777777777777766655 3333 2355555
Q ss_pred HHH
Q 036303 515 LRG 517 (605)
Q Consensus 515 ~~~ 517 (605)
+.+
T Consensus 79 ir~ 81 (273)
T COG4455 79 IRC 81 (273)
T ss_pred HHH
Confidence 543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.00 E-value=0.85 Score=36.77 Aligned_cols=82 Identities=10% Similarity=0.061 Sum_probs=44.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 91 LNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKM 170 (605)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (605)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..+.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence 4445556666666666666665554455666677777777766666666655511 112223344555555555
Q ss_pred HHHHHHHHH
Q 036303 171 VEAESMFRS 179 (605)
Q Consensus 171 ~~a~~~~~~ 179 (605)
+++.-++.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555555444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=80.77 E-value=5.7 Score=27.51 Aligned_cols=46 Identities=4% Similarity=0.067 Sum_probs=20.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC-CH-HHHHHHHHHHHhcCCHHHHHHH
Q 036303 485 YDGQILKASKLFSDMRSDNLRP-DN-CTYTTMLRGLLRAKRMLDVMML 530 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~ 530 (605)
...+.++|+..|+++++.-..| +- .++..++.+++..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555421111 11 1444445555555555554443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.58 E-value=8.9 Score=37.94 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=73.7
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChh
Q 036303 483 LCYDGQILKASKLFSDMRSDNLRPD--NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLK 560 (605)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 560 (605)
+...|+...|.+.+..+.. ..|- .+....|.....+.|-..+|-.++.+.+... ...+-++..++++|....+.+
T Consensus 617 wr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhH
Confidence 3457888999998888775 3442 3355667777778888888888888877643 345777888899999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCc
Q 036303 561 SAFRCSEFLKESRIGSSETEG 581 (605)
Q Consensus 561 ~A~~~~~~~~~~~~~~~~~~~ 581 (605)
.|++.++.+.+++|+....+.
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECEN 714 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHH
Confidence 999999999999998876544
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.41 E-value=4.2 Score=24.55 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=10.3
Q ss_pred HHHHHccCChhHHHHHHHHHHh
Q 036303 126 IDCCCGQGDVMKALNLFDEMID 147 (605)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~ 147 (605)
..+|...|+.+.|+++++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444444444444443
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=80.35 E-value=23 Score=26.92 Aligned_cols=88 Identities=13% Similarity=0.091 Sum_probs=53.6
Q ss_pred ccCCHHHHHHHHHHHHh--CCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCcc-HHH--
Q 036303 485 YDGQILKASKLFSDMRS--DNLRP---------DNCTYTTMLRGLLRAKRMLDVMMLLADMIK----MG-IVPD-AVI-- 545 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~--~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~-~~~-- 545 (605)
..|-+++|..-..++.+ ..++| |..++..|..++...|++++++.-.++.+. .| +..| ...
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 34566666666655543 22333 334566677788889999988877666653 22 3334 333
Q ss_pred --HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 546 --NQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 546 --~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
...-+.++...|+.++|...|+++-++
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 334566788999999999999877653
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=80.10 E-value=6.7 Score=27.19 Aligned_cols=50 Identities=4% Similarity=-0.004 Sum_probs=37.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcc--HHHHHHHHHHHHhcCChhHHHHHHHH
Q 036303 519 LRAKRMLDVMMLLADMIKMGIVPD--AVINQVMVRGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (605)
+...+.++|+..|.+.++.-..+. -.++-.++.+|+..|++.+++++.-.
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378889999999999997543432 33445678899999999999886543
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 605 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 3e-06 | ||
| 4g23_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 3e-04 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
| >pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 90.6 bits (223), Expect = 4e-19
Identities = 31/222 (13%), Positives = 64/222 (28%), Gaps = 4/222 (1%)
Query: 76 RKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDV 135
R+ P + LL K D + L CC +
Sbjct: 84 RQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQL 143
Query: 136 MKALNLFD---EMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTY 192
A +L K T+ +Y ++ G + E + +++ G+ P+L +Y
Sbjct: 144 PLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203
Query: 193 NALMDGYCKVADVNRALEFY-HEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMA 251
A + + +E +M L+ + VL+ + L+A +
Sbjct: 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263
Query: 252 KFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPD 293
P + L+ L ++ + +
Sbjct: 264 LPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 88.7 bits (218), Expect = 2e-18
Identities = 28/226 (12%), Positives = 74/226 (32%), Gaps = 4/226 (1%)
Query: 241 RAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNIL 300
+ AG + P L+ +L + + + ++S
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 301 IKGLCGVGQLEGAEGLLQK---MYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTE 357
K QL A LL ++ L + YN+++ G+ ++G ++ + V + +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 358 KGVEPNVVTFSSLIDGQCKAGNIDAAMGLY-TEMVIKSLVPDVVVFTALIDGLSKDGNMK 416
G+ P+++++++ + + + +M + L + L+ + +K
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 417 ETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTD 462
++ P S L+ ++ + L
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.4 bits (186), Expect = 1e-14
Identities = 19/168 (11%), Positives = 51/168 (30%), Gaps = 7/168 (4%)
Query: 55 FSTLIIAFSEMGHIEEALWV------YRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYE 108
+ A + R+ L + NA++ G ++G F +
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189
Query: 109 EMVLCGLVADVVTYGVLIDCCCGQGDVMKALN-LFDEMIDKGIEPTVVIYTILIHGLCNE 167
+ GL D+++Y + C Q + ++M +G++ + +L+
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249
Query: 168 NKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEM 215
+ + + +P + L+ + + +
Sbjct: 250 TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 70.6 bits (171), Expect = 9e-13
Identities = 18/137 (13%), Positives = 46/137 (33%), Gaps = 2/137 (1%)
Query: 425 MLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC 484
+A+++ + + ++ A + + + +Y A++
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWA 176
Query: 485 YDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRA-KRMLDVMMLLADMIKMGIVPDA 543
G + + ++ L PD +Y L+ + R + + L M + G+ A
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 544 VINQVMVRGYQENGDLK 560
+ V++ LK
Sbjct: 237 LFTAVLLSEEDRATVLK 253
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 5e-07
Identities = 77/494 (15%), Positives = 138/494 (27%), Gaps = 142/494 (28%)
Query: 74 VYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCG---LVADVV-TYGVL---- 125
V R L ++ ALL ++ K + + ++ G + DV +Y V
Sbjct: 131 VSRLQPYL-KLR--QALLE--LRPAKNVLI----DGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 126 -------IDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAES--- 175
+ C V++ L ID +T N + +
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-------WTSRSDHSSNIKLRIHSIQAEL 234
Query: 176 ----MFRSMREC-GVVPNLYTYNAL--MDGYCK---------VADVNRALEFYHEMLHHN 219
+ C V+ N+ A + CK V D A H L H+
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 220 LQPNVV--TFGVLMDGL-CKVGELR--AAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGN 274
+L+ L C+ +L ++ + DG N
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES--------IRDGLATWDN 346
Query: 275 LFEAMSLCSEMEK-FEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYN 333
C ++ E S + LE AE +KM+ L+ V +
Sbjct: 347 W--KHVNCDKLTTIIESS---------------LNVLEPAE--YRKMFDR--LS-VFPPS 384
Query: 334 SLIDGYCKEGDMEKALSVC-SQMTEKGVEPNVVTF--SSLIDGQCKAGNIDAAMGLYTEM 390
+ I LS+ + + V V SL++ Q K +
Sbjct: 385 AHI--------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-------ESTIS-- 427
Query: 391 VIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLI--------- 441
+P + ++ K N L++ +++ P F LI
Sbjct: 428 -----IPSI-----YLELKVKLENEYA---LHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 442 -----HGLFKNGRISNA-------LNF-FLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ 488
H L L+F FLE+ + D + + + + Q Y
Sbjct: 475 SHIGHH-LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 489 ILKASKLFSDMRSD 502
I + + +
Sbjct: 534 ICDNDPKYERLVNA 547
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 8e-06
Identities = 56/346 (16%), Positives = 105/346 (30%), Gaps = 109/346 (31%)
Query: 335 LIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKS 394
L + + + + E+ + N S I + + ++ +Y E +
Sbjct: 67 LFWTLLSKQE-----EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM--TRMYIEQRDR- 118
Query: 395 LVPDVVVFTALIDGLSKDGNM---KETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGR-- 449
L D VF N+ + L+L + +LE + +V I G+ +G+
Sbjct: 119 LYNDNQVFA--------KYNVSRLQPYLKLRQALLELRPAKNVL-----IDGVLGSGKTW 165
Query: 450 -ISNALNFFLEKTDKTDG------GYC-SPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501
+ + + C SP VL ++Q L Y QI SD S
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLY--QIDPNWTSRSD-HS 220
Query: 502 DNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDA-VIN------QVMV--RG 552
N++ + LR LL++K + +++L + V +A N ++++ R
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLN------VQNAKAWNAFNLSCKILLTTRF 274
Query: 553 YQENGDLKSAFRCSEFLKESRIGSSETEG------------------------------- 581
Q L +A L + + E
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 582 ----------------------HTTRSFLGHLKPTVYKE--QDLSI 603
S L L+P Y++ LS+
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 50/384 (13%), Positives = 100/384 (26%), Gaps = 31/384 (8%)
Query: 58 LIIAFSEMGHIEEALWVYRK-IEVLPA-IQACNALLNGLIKKGKFDSVWEFYEEMVLCGL 115
+ ++ L V + + P + A + G ++ +
Sbjct: 112 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQ-AHGLT 170
Query: 116 VADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPT-VVIYTILIHGLCNENKMVEAE 174
VV V + L + + G+ P VV G +
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASNGGGKQALETVQRLL 228
Query: 175 SMFRSMRECGVVPN-LYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPN-VVTFGVLMD 232
+ + G+ P + + G + V R L + L P VV
Sbjct: 229 PVLC--QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASNSG 284
Query: 233 GLCKVGELRAAGNFFVHMAKFGVFPN-IFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEIS 291
G + ++ P + G + + + + ++
Sbjct: 285 GKQALETVQRLLPVLCQAHGLT--PQQVVAIASNGGGKQALETVQRLLPVLCQA--HGLT 340
Query: 292 PD-VFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILAN---VVTYNSLIDGYCKEGDMEK 347
P V G + ++ + + VV S G +++
Sbjct: 341 PQQVVAIASHDGGKQALETVQRLL----PVLCQAHGLTPEQVVAIASNGGGKQALETVQR 396
Query: 348 ALSVCSQMTEKGVEPN-VVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPD-VVVFTAL 405
L V Q + P VV +S G+ + + + + L P VV +
Sbjct: 397 LLPVLCQAHG--LTPEQVVAIASHDGGKQALETVQRLLPVLCQ-AHG-LTPQQVVAIASN 452
Query: 406 IDGLSKDGNMKETLRLYKEMLEAK 429
G ++ L L A
Sbjct: 453 GGGRPALESIVAQLSRPDPALAAL 476
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 7e-04
Identities = 70/480 (14%), Positives = 138/480 (28%), Gaps = 48/480 (10%)
Query: 45 LEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRK-IEVLPA-IQACNALLNGLIKKGKFDS 102
+ ++ I + ++ L V + + P + A + G
Sbjct: 490 HGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQR 549
Query: 103 VWEFYEEMVLCGLVAD-VVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPT-VVIYTIL 160
+ + GL D VV V + L + + G+ VV
Sbjct: 550 LLPVLCQAH--GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTQVQVVAIASN 605
Query: 161 IHGLCNENKMVEAESMFRSMRECGVVPNLY-TYNALMDGYCKVADVNRALEFYHEMLHHN 219
I G + + + G+ P + G + V R L +
Sbjct: 606 IGGKQALETVQRLLPVLC--QAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAH--G 661
Query: 220 LQPN-VVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPN-IFVYNCLIDGHCKAGNLFE 277
L P+ VV G + ++ G+ + G +
Sbjct: 662 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTQEQVVAIASNNGGKQALETVQR 719
Query: 278 AMSLCSEMEKFEISPD-VFTYNILIKGLCGVGQLEGAEGLLQKMYKEGI---LANVVTYN 333
+ + + ++PD V G + ++ + + A VV
Sbjct: 720 LLPVLC--QAHGLTPDQVVAIASNGGGKQALETVQRLL----PVLCQAHGLTPAQVVAIA 773
Query: 334 SLIDGYCKEGDMEKALSVCSQMTEKGVEP-NVVTFSSLIDGQCKAGNIDAAMGLYTEMVI 392
S I G +++ L V Q + G+ VV +S I G+ + + + +
Sbjct: 774 SNIGGKQALETVQRLLPVLCQ--DHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQ--A 829
Query: 393 KSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISN 452
L D + ++ + K+ L + +L T + + N
Sbjct: 830 HGLTQD------QVVAIASNIGGKQALETVQRLLPVLCQDHGLT-PDQVVAIASNIGGKQ 882
Query: 453 ALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQI--LKASK--LFSDMRSDNLRPDN 508
A LE + C +H L + A+ +G L+ + L + L PD
Sbjct: 883 A----LETVQRLLPVLC-QDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQ 937
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.91 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.77 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.76 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.75 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.74 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.74 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.72 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.72 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.69 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.68 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.68 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.68 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.67 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.67 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.67 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.66 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.65 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.64 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.63 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.63 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.63 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.63 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.58 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.56 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.56 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.56 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.54 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.53 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.53 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.5 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.5 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.49 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.48 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.46 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.45 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.38 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.34 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.34 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.33 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.32 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.31 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.31 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.28 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.26 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.25 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.25 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.24 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.23 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.23 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.22 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.21 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.2 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.19 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.18 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.18 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.17 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.16 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.15 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.15 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.15 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.14 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.12 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.09 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.08 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.07 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.06 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.06 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.05 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.03 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.02 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.0 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.98 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.96 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.96 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.95 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.95 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.95 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.92 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.9 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.89 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.89 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.89 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.89 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.89 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.85 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.85 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.84 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.83 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.82 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.81 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.8 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.8 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.8 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.8 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.79 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.78 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.78 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.77 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.77 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.76 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.76 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.76 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.72 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.72 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.72 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.71 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.7 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.7 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.69 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.67 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.66 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.66 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.65 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.64 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.62 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.6 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.6 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.58 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.58 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.58 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.57 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.56 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.53 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.53 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.51 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.5 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.5 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.5 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.48 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.47 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.45 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.44 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.44 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.42 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.39 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.38 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.38 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.34 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.33 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.28 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.27 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.25 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.23 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.2 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.2 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.18 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.16 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.15 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.05 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.05 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.03 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.01 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.92 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.92 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.9 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.89 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.88 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.82 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.78 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.73 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.69 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.67 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.6 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.6 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.56 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.5 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.45 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.43 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.35 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.16 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.12 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.11 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.09 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.99 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.99 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.72 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.68 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.57 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.52 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.49 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.42 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.21 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.15 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.05 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.8 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.66 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.45 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.3 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.11 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.01 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.08 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.91 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.78 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.48 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.39 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.36 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.56 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 92.52 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.43 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.49 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 91.13 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.03 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.75 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 90.67 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.11 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.76 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 87.15 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.8 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 84.83 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.44 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.33 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.28 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 83.19 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.1 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.38 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 80.35 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=356.84 Aligned_cols=500 Identities=10% Similarity=0.025 Sum_probs=409.0
Q ss_pred HHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHH
Q 036303 62 FSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNL 141 (605)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 141 (605)
+.+.|.+..+...+...+. ++...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|+.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSL-SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccCccCCCCCccccchH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 4556666777777665543 56788999999999999999999999999864 56788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------CCCCCcccHHHHHHHHhccCChH
Q 036303 142 FDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMREC---------------GVVPNLYTYNALMDGYCKVADVN 206 (605)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~p~~~~~~~l~~~~~~~~~~~ 206 (605)
|+.+... +++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9998654 678899999999999999999999999853322 12335778999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH--HH-HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036303 207 RALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAG--NF-FVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCS 283 (605)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 283 (605)
+|++.|+++.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 218 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 9999999999864 334455555554443332222111 11 3444443334445566777888999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC
Q 036303 284 EMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPN 363 (605)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 363 (605)
++.+. +++..+++.++..|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 99875 5889999999999999999999999999999875 3477889999999999999999999999998764 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036303 364 VVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHG 443 (605)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (605)
..++..++..|.+.|++++|.++|+++.... +.+..++..++..|...|++++|..+|+++.+.+ +.+..++..++.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 8899999999999999999999999998763 3467899999999999999999999999999875 5678899999999
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHH
Q 036303 444 LFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRPD--NCTYTTMLRG 517 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~ 517 (605)
|.+.|++++|+++|+++.... +.+..+|..++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALF-----QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 999999999999999998864 567889999999999999999999999999874 55787 6799999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 518 LLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
|.+.|++++|...++++++.+ +.+..+|..++.+|.+.|++++|...++++.+.+|++...
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence 999999999999999999754 3379999999999999999999999999999999987543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=350.26 Aligned_cols=492 Identities=12% Similarity=0.054 Sum_probs=417.0
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 036303 50 FNPSVFSTLIIAFSEMGHIEEALWVYRKI-EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDC 128 (605)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (605)
.+...|..++..|.+.|++++|+.+|+++ ...|+..++..++.+|.+.|++++|..+|+++... +++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 45667899999999999999999999988 34567788999999999999999999999998654 6789999999999
Q ss_pred HHccCChhHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 036303 129 CCGQGDVMKALNLFDEMIDK---------------GIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYN 193 (605)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 193 (605)
|.+.|++++|+.+|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+.++. +...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHH
Confidence 99999999999999953322 22345789999999999999999999999999987543 455666
Q ss_pred HHHHHHhccCChHHHHH--H-HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 036303 194 ALMDGYCKVADVNRALE--F-YHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHC 270 (605)
Q Consensus 194 ~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 270 (605)
.+...+...+..+.+.. + +..+...+..+...++..++..|.+.|++++|.++|+.+.+. +++..+++.++..|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 66655554433322211 1 344444433444555666778888999999999999998875 588999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 271 KAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALS 350 (605)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 350 (605)
+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++++.+.. +.+..++..++..|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999998765 4578889999999999999999999999998764 5578899999999999999999999
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 351 VCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKI 430 (605)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 430 (605)
+|+++.+.. +.+..++..++.+|.+.|++++|+++|+++...+ +.+..++..++.+|...|++++|.++|+++.+..
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998864 3478899999999999999999999999999874 4478899999999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 036303 431 TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN--HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN 508 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (605)
+.+..++..++..+.+.|++++|+++|+++....+..+..|+ ..+|..++.+|.+.|++++|++.++++.+.+ +.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 550 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDA 550 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh
Confidence 568899999999999999999999999999886433234566 7899999999999999999999999999843 3367
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHH
Q 036303 509 CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQ 554 (605)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 554 (605)
.+|..++.+|...|++++|.+.++++++ +.| +...+..++.+|.
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHh
Confidence 7999999999999999999999999998 456 6888888887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-29 Score=243.43 Aligned_cols=379 Identities=16% Similarity=0.115 Sum_probs=231.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH
Q 036303 163 GLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRA 242 (605)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (605)
.+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..++..++..+...|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 344445555555555554443221 23334444444455555555555555544432 3344455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 243 AGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYK 322 (605)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 322 (605)
|...|+++.+.. +.+...+..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555554432 2233445555556666666666666666655532 22333445555556666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 036303 323 EGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVF 402 (605)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 402 (605)
.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+.+..... +.+..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 43 2345566666666666667777777766666653 2345566666677777777777777777666553 2245666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHH
Q 036303 403 TALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQA 482 (605)
Q Consensus 403 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 482 (605)
..+..++...|++++|...++++++.+ +.+..++..++.++.+.|++++|+..|++++... +.+..++..++.+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-----PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccHHHHHHHHHH
Confidence 677777777777777777777777654 4456677777777777777777777777777653 4566677777777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCC
Q 036303 483 LCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGD 558 (605)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 558 (605)
+...|++++|++.++++.+ ..|+ ..++..++.++.+.|++++|...++++++ +.| +..++..++.++...|+
T Consensus 315 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHccC
Confidence 7777788888887777776 3343 45777777777777888888888777776 345 47777777777766653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-28 Score=239.45 Aligned_cols=361 Identities=15% Similarity=0.116 Sum_probs=175.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 92 NGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMV 171 (605)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 171 (605)
..+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 34445555555555555555442 2234444445555555555555555555555442 234455555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 172 EAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMA 251 (605)
Q Consensus 172 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 251 (605)
+|...|+++....+. +..+|..++.++.+.|++++|++.|+++++.+ +.+...+..+...+...|++++|...|+++.
T Consensus 85 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 555555555543221 23345555555555555555555555555432 2223334444455555555555555555554
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 036303 252 KFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVT 331 (605)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 331 (605)
+.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..... +.+..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 432 2234445555555555555555555555554432 2233444445555555555555555555544432 123444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 036303 332 YNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSK 411 (605)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (605)
+..+...+...|++++|...++++.+.+ +.+..++..++.++...|++++|...|+++.... +.+..++..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 4555555555555555555555555442 1234444444455555555555555555444432 2234444444444445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036303 412 DGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTD 462 (605)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (605)
.|++++|...++++++.. +.+..++..++.++.+.|++++|+..|++++.
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555444432 23344444444444445555555555544444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-27 Score=238.58 Aligned_cols=453 Identities=11% Similarity=0.026 Sum_probs=250.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036303 84 IQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHG 163 (605)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (605)
...+...+..+.+.|++++|+..|+++...+ |+...+..++.++.+.|++++|+..++++++.+ +.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567777888888888888888888888864 578888888888888888888888888888774 3366788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHH
Q 036303 164 LCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAA 243 (605)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 243 (605)
+...|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+......-.............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 8888888888888888887653 244444444444444333333333333333222222221111110000000111111
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 036303 244 GNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCG---VGQLEGAEGLLQKM 320 (605)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~ 320 (605)
..+...+......+. . .....+.+...+......+.. .|++++|...++++
T Consensus 162 ~~~~~~~~~~~~~~~----------------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 162 TSMASFFGIFKPELT----------------F----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp HHHHHHHTTSCCCCC----------------C----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHH----------------H----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 111111111000000 0 000001112233333333332 55566666666655
Q ss_pred HH-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 321 YK-----EGI--------LANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLY 387 (605)
Q Consensus 321 ~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 387 (605)
.. ... +.+..++..+...+...|++++|...++++.+.... ...+..++.++...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55 210 112334555556666666666666666666655322 555566666666666666666666
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q 036303 388 TEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG 467 (605)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (605)
+++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|+..++++....
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 368 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--- 368 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS---
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---
Confidence 6666543 2244555666666666666666666666666654 3345556666666666666666666666666542
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHC
Q 036303 468 YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-------NCTYTTMLRGLLR---AKRMLDVMMLLADMIKM 537 (605)
Q Consensus 468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 537 (605)
+.+...+..++.++...|++++|.+.++++.+. .|+ ...+..++.++.. .|++++|...++++++.
T Consensus 369 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 369 --PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp --TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred --ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 233455566666666666666666666666552 222 2256666666666 66666666666666653
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 538 GIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 538 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
. +.+..++..++.+|.+.|++++|...++++.+.+|++..
T Consensus 445 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 445 D-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 2 124566666666666667777776666666666665443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-26 Score=228.63 Aligned_cols=462 Identities=10% Similarity=-0.005 Sum_probs=319.4
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKI-EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCC 129 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (605)
....+...+..+.+.|++++|+..|+++ ...|+..++..++.++.+.|++++|...|+++.+.+ +.+..++..++.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 4567889999999999999999999988 334689999999999999999999999999999885 34778999999999
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHH
Q 036303 130 CGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRAL 209 (605)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 209 (605)
...|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 157 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN----- 157 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C-----
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC-----
Confidence 99999999999999999985 345555555666555555555555555544444333333322221111111111
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 036303 210 EFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCK---AGNLFEAMSLCSEME 286 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 286 (605)
.|+.......+..+...... .....+.+...+......+.. .|++++|...|+++.
T Consensus 158 -----------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 158 -----------LPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp -----------CCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred -----------CchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 11211111111100000000 000012223333334443443 677777777777776
Q ss_pred h-----CCC--------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 287 K-----FEI--------SPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCS 353 (605)
Q Consensus 287 ~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (605)
+ ... +.+..++..+...+...|++++|...++++..... +...+..+...+...|++++|...++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5 311 12345667777788888888888888888887643 37778888888888888888888888
Q ss_pred HHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036303 354 QMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPS 433 (605)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 433 (605)
++.... +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+
T Consensus 295 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 371 (514)
T 2gw1_A 295 KALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEA 371 (514)
T ss_dssp HHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccC
Confidence 888764 3366778888888899999999999999888774 3356678888888999999999999999988764 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CccHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCC-CH
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC-SPNHVLYAAIIQALCY---DGQILKASKLFSDMRSDNLRP-DN 508 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p-~~ 508 (605)
..++..++..+...|++++|+..++++....+.... ......+..++.++.. .|++++|...++++.+ ..| +.
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~ 449 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDPRSE 449 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH--hCcccH
Confidence 778888899999999999999999998875421100 0013378888999999 9999999999999988 344 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHH
Q 036303 509 CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVM 549 (605)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l 549 (605)
.++..+..++...|++++|...++++++ +.|+ ...+..+
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~ 489 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHHHHHHH
Confidence 6888899999999999999999999998 4454 4444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-28 Score=236.39 Aligned_cols=200 Identities=19% Similarity=0.251 Sum_probs=106.4
Q ss_pred HHHHHHHCCCCCCHH-hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHHHHH
Q 036303 106 FYEEMVLCGLVADVV-TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENK---------MVEAES 175 (605)
Q Consensus 106 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~ 175 (605)
+.+.+.+.+..+.+. .++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|.+.+. ++.|.+
T Consensus 12 L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~ 91 (501)
T 4g26_A 12 LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFD 91 (501)
T ss_dssp ------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHH
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHH
Confidence 334444444433332 4555566666666666666666666666666666666666666654433 345555
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 176 MFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGV 255 (605)
Q Consensus 176 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (605)
+|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 92 lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~ 171 (501)
T 4g26_A 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV 171 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 036303 256 FPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLC 305 (605)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (605)
.||..+|+.++.+|++.|++++|.++|++|.+.+..|+..||+.++..|.
T Consensus 172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=235.43 Aligned_cols=205 Identities=18% Similarity=0.249 Sum_probs=153.3
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC---------hH
Q 036303 137 KALNLFDEMIDKGIEPTV-VIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVAD---------VN 206 (605)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------~~ 206 (605)
.+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|.+.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555666666555443 35788889999999999999999999999999999999999998887654 56
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 207 RALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEME 286 (605)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 286 (605)
+|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77788888887788888888888888888888888888888888877777888888888888888888888888888888
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036303 287 KFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCK 341 (605)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (605)
+.|+.||..+|+.++.+|++.|++++|.+++++|.+.+..|+..||+.++..+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7788888888888888888888888888888888877777888888777777654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-25 Score=223.08 Aligned_cols=435 Identities=11% Similarity=0.035 Sum_probs=264.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 85 QACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGL 164 (605)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (605)
..+..++..+.+.|++++|+..|+++.... +.++..+..+..++...|++++|+..++++++.+ +.+..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 455666666666677777777777666653 2356666666667777777777777777666653 33556666666677
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCHHH
Q 036303 165 CNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHN--LQPNVVTFGVLMDGLCKVGELRA 242 (605)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 242 (605)
...|++++|...|+.+ ... |+. ....+..+...+....|...++.+.... ..+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 7777777777766532 221 111 1112333334444566666666665431 01111112223333444444444
Q ss_pred HHHHHHHHHHCCCCCCHh-hHHHHHHHH--------HhcCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHh
Q 036303 243 AGNFFVHMAKFGVFPNIF-VYNCLIDGH--------CKAGNLFEAMSLCSEMEKFEISPDV-------FTYNILIKGLCG 306 (605)
Q Consensus 243 a~~~~~~~~~~~~~~~~~-~~~~l~~~~--------~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~ 306 (605)
+...+...... .+... ....+...+ ...|++++|..+++++.+.. +.+. .++..+...+..
T Consensus 179 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 179 EVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHh
Confidence 43333222211 11111 112222111 12346778888888877643 2222 245556667777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 307 VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGL 386 (605)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 386 (605)
.|++++|...++++.... |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 888888888888887763 446777778888888888888888888887764 33667777888888888888888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q 036303 387 YTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDG 466 (605)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (605)
++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|+..|++++...+.
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 88877663 2345667777777888888888888888887764 455667777788888888888888888877664321
Q ss_pred CC-CCccHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 467 GY-CSPNHVLYAAIIQALCYD----------GQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADM 534 (605)
Q Consensus 467 ~~-~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (605)
.. .......+.....++... |++++|+..++++.+ ..| +...+..+..++...|++++|...++++
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11 111122233445566666 788888888888776 334 3457777777777888888888888877
Q ss_pred HH
Q 036303 535 IK 536 (605)
Q Consensus 535 ~~ 536 (605)
++
T Consensus 489 l~ 490 (537)
T 3fp2_A 489 AI 490 (537)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-24 Score=216.40 Aligned_cols=438 Identities=13% Similarity=0.047 Sum_probs=330.1
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDC 128 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (605)
.+..+..++..+.+.|++++|+..|+++ ..|.+..++..++.++.+.|++++|++.|+++...++ .+..++..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 3467889999999999999999999988 3567889999999999999999999999999998853 478899999999
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHhccCChH
Q 036303 129 CCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGV--VPNLYTYNALMDGYCKVADVN 206 (605)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~ 206 (605)
+...|++++|+..|+ .... .|+. ....+..+...+...+|...++.+....+ .+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999997 4433 2221 22234455566667889999999876421 112223344555566666666
Q ss_pred HHHHHHHHHHhCCCCCCcc-hHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCCC-------HhhHHHHHHHHH
Q 036303 207 RALEFYHEMLHHNLQPNVV-TFGVLMDGLC--------KVGELRAAGNFFVHMAKFGVFPN-------IFVYNCLIDGHC 270 (605)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~ 270 (605)
.+...+...... .+... ....+...+. ..|++++|..+++.+.+.. +.+ ..++..+...+.
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHH
Confidence 665544332221 11111 2222222221 2257899999999998754 222 224666778889
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 271 KAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALS 350 (605)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 350 (605)
..|++++|...++.+.... |+...+..+...+...|++++|...++++.... +.+..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999998854 567888889999999999999999999998875 4478889999999999999999999
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 351 VCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKI 430 (605)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 430 (605)
.++++.+..+ .+...+..+..++...|++++|...++++.... +.+...+..+...+...|++++|...++++++...
T Consensus 332 ~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 9999998743 356788899999999999999999999998874 44667888899999999999999999999886531
Q ss_pred -----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 036303 431 -----TPSVFTVSSLIHGLFKN----------GRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKL 495 (605)
Q Consensus 431 -----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 495 (605)
......+...+.++... |++++|+..|++++... +.+...+..++.++...|++++|.+.
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-----PRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 11222344556677777 99999999999999864 45678899999999999999999999
Q ss_pred HHHHHhCCCCCCHH
Q 036303 496 FSDMRSDNLRPDNC 509 (605)
Q Consensus 496 ~~~~~~~~~~p~~~ 509 (605)
|+++.+ +.|+..
T Consensus 485 ~~~al~--~~~~~~ 496 (537)
T 3fp2_A 485 FEDSAI--LARTMD 496 (537)
T ss_dssp HHHHHH--HC--CH
T ss_pred HHHHHH--hCCCcH
Confidence 999998 556544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-24 Score=210.38 Aligned_cols=356 Identities=12% Similarity=0.040 Sum_probs=236.0
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 036303 188 NLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLID 267 (605)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 267 (605)
+...+..++..+.+.|++++|+..|++++... +.+..++..++.++...|++++|...++.+.+.+ +.+...+..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44455556666666666666666666665542 3345555566666666666666666666665543 234455555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036303 268 GHCKAGNLFEAMSLCSEMEKFEISPDV---FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGD 344 (605)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (605)
+|...|++++|...|+++.+.. +.+. ..+..++..+.. ..+..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 6666666666666666665532 1122 333333222110 011222344666777
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 345 MEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKE 424 (605)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 424 (605)
+++|...++++.+.. +.+...+..++.+|...|++++|...|+++.... +.+..++..++..+...|++++|...+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777777653 3366677777777777777777777777776653 33566777777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc--HHHHHHHHHHHHccCCHH
Q 036303 425 MLEAKITPSVFTVSSL------------IHGLFKNGRISNALNFFLEKTDKTDGGYCSPN--HVLYAAIIQALCYDGQIL 490 (605)
Q Consensus 425 ~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 490 (605)
+++.. +.+...+..+ +..+.+.|++++|+..|++++...+. .+. ...+..++.++.+.|+++
T Consensus 237 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 237 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS---IAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS---SHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHHHCCCHH
Confidence 77653 3344444433 78888999999999999999875321 111 346788889999999999
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHH------------HHHHhc
Q 036303 491 KASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMV------------RGYQEN 556 (605)
Q Consensus 491 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~------------~~~~~~ 556 (605)
+|+..++++.+ ..| +...|..++.+|...|++++|...++++++ +.| +..++..++ ..|...
T Consensus 313 ~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~l 388 (450)
T 2y4t_A 313 EAIRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKIL 388 (450)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred HHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHh
Confidence 99999999887 345 567899999999999999999999999987 456 577777777 345555
Q ss_pred C-----ChhHHHHHHHH-HHhcCCCCCCC
Q 036303 557 G-----DLKSAFRCSEF-LKESRIGSSET 579 (605)
Q Consensus 557 g-----~~~~A~~~~~~-~~~~~~~~~~~ 579 (605)
| +.+++.+.+++ +.+..|++.+.
T Consensus 389 g~~~~~~~~~~~~~y~~~~l~~~pd~~~~ 417 (450)
T 2y4t_A 389 GVKRNAKKQEIIKAYRKLALQWHPDNFQN 417 (450)
T ss_dssp CSSTTCCTTHHHHHHHHHHHHSCGGGCCS
T ss_pred CCCccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 5 67788998886 77888877654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-23 Score=207.51 Aligned_cols=329 Identities=15% Similarity=0.083 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 102 SVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMR 181 (605)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 181 (605)
.+...+.++.... +.+...+..++..+.+.|++++|+.+|+.+.+.. +.+..++..++.++...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555555442 3356677777777778888888888888777653 3466777777777888888888888888777
Q ss_pred HCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036303 182 ECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNV---VTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPN 258 (605)
Q Consensus 182 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 258 (605)
+.++. +..++..++.++.+.|++++|.+.|+++.... +.+. ..+..++..+..
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~---------------------- 143 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM---------------------- 143 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH----------------------
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH----------------------
Confidence 76433 56667777777777777777777777777642 2222 333333332111
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036303 259 IFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDG 338 (605)
Q Consensus 259 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 338 (605)
..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..++..
T Consensus 144 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 144 -QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTL 220 (450)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 112223445666777777777777776643 3456667777777777777777777777776653 3456777777777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----Hhh
Q 036303 339 YCKEGDMEKALSVCSQMTEKGVEPNVVTFSSL------------IDGQCKAGNIDAAMGLYTEMVIKSLVPD-----VVV 401 (605)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~ 401 (605)
+...|++++|...++++....+ .+...+..+ +..+...|++++|...|+++... .|+ ...
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~ 297 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRS 297 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHH
Confidence 7777777777777777776532 233333333 55666666677776666666654 222 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 036303 402 FTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 402 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (605)
+..+...+.+.|++++|...++++++.. +.+..++..++.+|...|++++|+..|+++++.
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5556666666666666666666666543 445666666666666666666666666666654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-21 Score=184.17 Aligned_cols=318 Identities=13% Similarity=0.084 Sum_probs=209.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 036303 226 TFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLC 305 (605)
Q Consensus 226 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (605)
.+..++..+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 34445555555555555555555554432 2334445555555555555555555555554432 223344444555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 036303 306 GVGQLEGAEGLLQKMYKEGIL--ANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAA 383 (605)
Q Consensus 306 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 383 (605)
..|++++|...++++.+.... .+...+..+...+. ...+..+...+...|++++|
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHHH
Confidence 555555555555555443210 01112211111000 00112235677778888888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 036303 384 MGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (605)
...++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...++++...
T Consensus 140 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 140 ITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888887663 3466777778888888888888888888888764 566778888888888888888888888888775
Q ss_pred cCCCCCCccHHHHH------------HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCHHH
Q 036303 464 TDGGYCSPNHVLYA------------AIIQALCYDGQILKASKLFSDMRSDNLRPDNC-----TYTTMLRGLLRAKRMLD 526 (605)
Q Consensus 464 ~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~ 526 (605)
. +.+...+. .++..+...|++++|+..++++.+ ..|+.. .+..+..++...|++++
T Consensus 218 ~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 218 D-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp C-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred C-----ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 3 23333332 336678899999999999999998 345432 34557788999999999
Q ss_pred HHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 527 VMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 527 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
|...++++++. .| +..++..++.+|...|++++|...++++.+.+|++...
T Consensus 291 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 291 AIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH
Confidence 99999999974 45 68899999999999999999999999999999886643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-19 Score=178.93 Aligned_cols=384 Identities=14% Similarity=0.029 Sum_probs=232.2
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCc
Q 036303 153 TVVIYTILIHGLCN----ENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCK----VADVNRALEFYHEMLHHNLQPNV 224 (605)
Q Consensus 153 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 224 (605)
+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|++.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44444445555544 455555555555555432 33444445555554 555555555555555433 33
Q ss_pred chHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhh
Q 036303 225 VTFGVLMDGLCK----VGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCK----AGNLFEAMSLCSEMEKFEISPDVFT 296 (605)
Q Consensus 225 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 296 (605)
..+..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|++.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 444455555554 456666666666655543 34445555555555 556666666666666542 4555
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHHHH
Q 036303 297 YNILIKGLCG----VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCK----EGDMEKALSVCSQMTEKGVEPNVVTFS 368 (605)
Q Consensus 297 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (605)
+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5556666655 566777777776666653 45556666666654 567777777777766653 344555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036303 369 SLIDGQCK----AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKD-----GNMKETLRLYKEMLEAKITPSVFTVSS 439 (605)
Q Consensus 369 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (605)
.+...|.. .+++++|+..|++..+.+ +...+..+...|... +++++|...|++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 56666666 677777777777776553 445556666666665 77777888777777754 4456666
Q ss_pred HHHHHHhcC---CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 036303 440 LIHGLFKNG---RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY----DGQILKASKLFSDMRSDNLRPDNCTYT 512 (605)
Q Consensus 440 l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (605)
++..+...| ++++|++.|++..+. .++..+..+...|.. .+++++|.+.|+++.+.+ ++..+.
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~ 403 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAK-------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQV 403 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHH
Confidence 777666655 677788888777763 345666777777776 678888888888877743 455666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCC-c-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 513 TMLRGLLR----AKRMLDVMMLLADMIKMGIV-P-DAVINQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 513 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
.+...|.. .+++++|...++++.+.+.. | ++.....++..+.. +.+.|.+..++..+.
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~ 467 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEK 467 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHH
Confidence 77777776 67888888888888765533 2 45555555554443 334444444444443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.1e-19 Score=175.34 Aligned_cols=366 Identities=13% Similarity=0.054 Sum_probs=311.0
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCHHHHH
Q 036303 173 AESMFRSMRECGVVPNLYTYNALMDGYCK----VADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCK----VGELRAAG 244 (605)
Q Consensus 173 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 244 (605)
+...++...+.| +...+..+...|.. .+++++|++.|++..+.| +...+..+...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 345555555543 66777788888887 899999999999998864 56788889999998 89999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHH
Q 036303 245 NFFVHMAKFGVFPNIFVYNCLIDGHCK----AGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCG----VGQLEGAEGL 316 (605)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 316 (605)
..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998865 66777788888888 889999999999998864 56677788888877 7899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 036303 317 LQKMYKEGILANVVTYNSLIDGYCK----EGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK----AGNIDAAMGLYT 388 (605)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 388 (605)
|++..+.+ +...+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|..+|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999875 78888899999988 899999999999999875 56777888888886 789999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 036303 389 EMVIKSLVPDVVVFTALIDGLSK----DGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKN-----GRISNALNFFLE 459 (605)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~ 459 (605)
+....+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...+... +++++|+..|++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 998764 56677778888877 899999999999998764 566788888888887 899999999999
Q ss_pred hhhccCCCCCCccHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 036303 460 KTDKTDGGYCSPNHVLYAAIIQALCYDG---QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLR----AKRMLDVMMLLA 532 (605)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 532 (605)
+.+. .+...+..+...|...| ++++|+++|+++.+. .++..+..+...|.. .+++++|...++
T Consensus 322 a~~~-------~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 322 SAEQ-------GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp HHHT-------TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHhc-------CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9874 34567778888887766 889999999999984 367788889999988 899999999999
Q ss_pred HHHHCCCCccHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCC
Q 036303 533 DMIKMGIVPDAVINQVMVRGYQE----NGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 533 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 575 (605)
++.+.+ ++..+..++.+|.. .+++++|..+|+++.+.+|+
T Consensus 392 ~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 392 KAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 999865 57889999999998 89999999999999999865
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-20 Score=177.90 Aligned_cols=329 Identities=12% Similarity=0.048 Sum_probs=231.0
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 036303 188 NLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLID 267 (605)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 267 (605)
+...+..+...+...|++++|+..|+++++.. +.+..++..++..+...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567888999999999999999999998864 5567889999999999999999999999998864 446788899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036303 268 GHCKAGNLFEAMSLCSEMEKFEISP----DVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEG 343 (605)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 343 (605)
.+...|++++|...++++.+.. | +...+..+..... ...+..+...+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 9999999999999999998854 4 3333333321100 111223344555566
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036303 344 DMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYK 423 (605)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 423 (605)
++++|...++++.+.. +.+...+..+..++...|++++|...++++.... +.+...+..+...+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666655542 2345555556666666666666666666665542 3345555566666666666666666666
Q ss_pred HHHHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccH----HHHHHHHHHHHccC
Q 036303 424 EMLEAKITPSVFTVS------------SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNH----VLYAAIIQALCYDG 487 (605)
Q Consensus 424 ~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 487 (605)
++.+.. +.+...+. .++..+.+.|++++|+..++++....+ .+. ..+..++.++...|
T Consensus 213 ~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 213 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-----SVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----SSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CchHHHHHHHHHHHHHHHHcc
Confidence 666543 22233222 336667888999999999988887642 222 23456778888899
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHh
Q 036303 488 QILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQE 555 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 555 (605)
++++|++.++++.+ ..| +...+..+..++...|++++|...++++++ +.| +..++..+..++..
T Consensus 287 ~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 287 KPVEAIRICSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRL 352 (359)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHH
Confidence 99999999999887 345 566888888899999999999999999987 445 46677777665543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-20 Score=178.21 Aligned_cols=294 Identities=14% Similarity=0.037 Sum_probs=192.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036303 256 FPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSL 335 (605)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 335 (605)
+.+...+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4455566667777777788888888777776643 3445556666677777777777777777777653 3355667777
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 036303 336 IDGYCKEG-DMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGN 414 (605)
Q Consensus 336 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (605)
...+...| ++++|...++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 77777777 7777777777777664 2345666777777777777777777777776653 2234455556667777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC----CccHHHHHHHHHHHHccCCHH
Q 036303 415 MKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC----SPNHVLYAAIIQALCYDGQIL 490 (605)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~ 490 (605)
+++|...++++++.. +.+..++..++..+...|++++|+..+++++......+. +....++..++.++...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 777777777777654 445666777777777777777777777776664322111 223456666667777777777
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHH-HhcCC
Q 036303 491 KASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGY-QENGD 558 (605)
Q Consensus 491 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~ 558 (605)
+|+..++++.+. .| +...+..+..++...|++++|...++++++ +.| +..++..++.++ ...|+
T Consensus 254 ~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 254 EALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCc
Confidence 777777776662 23 344666666677777777777777776665 334 466666666666 34444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-20 Score=172.66 Aligned_cols=286 Identities=8% Similarity=-0.035 Sum_probs=218.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 036303 291 SPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSL 370 (605)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 370 (605)
+.+...+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4555667777788888888888888888887764 3345566667777788888888888888888764 3366777888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036303 371 IDGQCKAG-NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGR 449 (605)
Q Consensus 371 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (605)
...+...| ++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 88888888 8888888888888764 3356677788888888888888888888888765 4455667778888888888
Q ss_pred HHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhc
Q 036303 450 ISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDN--------LRPDNCTYTTMLRGLLRA 521 (605)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~ 521 (605)
+++|+..+++++... +.+...+..++..+...|++++|+..++++.+.. .+.....+..+..++...
T Consensus 175 ~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 175 SKLAERFFSQALSIA-----PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 888888888888764 4567788888888888888888888888887631 123355788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCccchhh
Q 036303 522 KRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTRS 586 (605)
Q Consensus 522 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 586 (605)
|++++|...++++++.. +.+..++..++.+|.+.|++++|...++++.+.+|++..........
T Consensus 250 g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 313 (330)
T 3hym_B 250 KKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313 (330)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHH
Confidence 88888888888888643 22577888888888888888888888888888888766554444433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-17 Score=173.07 Aligned_cols=499 Identities=12% Similarity=0.108 Sum_probs=333.5
Q ss_pred hhhHhhcCCchHH----HHHHHHH-HHHHhhcCCCcccHHHHHHHHh---hCcCCCCCHHhHHHHHHHHHhcCChHHHH-
Q 036303 2 FYVLANAKLYKNA----RCLIKDV-TENLLKSRKPHHVCYSVFNALN---SLEIPKFNPSVFSTLIIAFSEMGHIEEAL- 72 (605)
Q Consensus 2 ~~~~~~~~~~~~a----~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~- 72 (605)
+.++..+++-|+. ...|+++ ++.++..++|. .+.-.|+.=. .+..-......|...++.+.+..+.+-=-
T Consensus 880 akiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~-la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~ 958 (1630)
T 1xi4_A 880 AKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPH-LACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGS 958 (1630)
T ss_pred HHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcc-hHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHH
Confidence 3445555554444 3344444 56777777777 5444444300 00000112234445555555544433111
Q ss_pred ----------HHHHhc-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHccCCh
Q 036303 73 ----------WVYRKI-----EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGL--VADVVTYGVLIDCCCGQGDV 135 (605)
Q Consensus 73 ----------~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 135 (605)
++.++. +...++.--...+.+|...|.+.+|+++++++...+- ..+...-+.++.+.++. +.
T Consensus 959 vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~ 1037 (1630)
T 1xi4_A 959 VLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DR 1037 (1630)
T ss_pred HhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-Ch
Confidence 122211 2223344445667888889999999999999884321 12344555666666666 55
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 036303 136 MKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEM 215 (605)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 215 (605)
.+..+...++... + ...+...+...|.+++|..+|++... .....+.++. ..+++++|.+++++.
T Consensus 1038 ~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv 1102 (1630)
T 1xi4_A 1038 TRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC 1102 (1630)
T ss_pred hhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc
Confidence 6666666665422 2 34477788889999999999988531 2222233332 678889999888754
Q ss_pred HhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 036303 216 LHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVF 295 (605)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 295 (605)
-++.+|..++.++...|++++|...|.+. .+...|..++.++.+.|++++|.+.|....+.. +++.
T Consensus 1103 ------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~ 1168 (1630)
T 1xi4_A 1103 ------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESY 1168 (1630)
T ss_pred ------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cccc
Confidence 24678889999999999999999998664 466677888999999999999999998877754 3333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 036303 296 TYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQC 375 (605)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (605)
..+.++.+|.+.+++++...++ . .++...+..+...|...|++++|..+|..+ ..|..++.++.
T Consensus 1169 Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLv 1232 (1630)
T 1xi4_A 1169 VETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLV 1232 (1630)
T ss_pred ccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHH
Confidence 3445888888888888544442 2 346667778888999999999999999875 36888899999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 376 KAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALN 455 (605)
Q Consensus 376 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 455 (605)
+.|++++|.+.+++.. +..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.
T Consensus 1233 kLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1233 HLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred HhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988763 668888888889888998888876654 23466677788888999999999999
Q ss_pred HHHHhhhccCCCCCCccHHHHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHH
Q 036303 456 FFLEKTDKTDGGYCSPNHVLYAAIIQALCY--DGQILKASKLFSDMRSDNLRP------DNCTYTTMLRGLLRAKRMLDV 527 (605)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A 527 (605)
+++..+... +.+...|+-+..++.+ -++..++.++|..-.+ ++| +...|..++-.|.+.|+++.|
T Consensus 1302 LlE~aL~Le-----raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1302 MLEAALGLE-----RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred HHHHHhccC-----hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 998887643 3345556556666554 3456666666665443 443 455788888889899999988
Q ss_pred HHHH-------------HHHHHCCCCccHHHHHHHHHHHHhcC---------------ChhHHHHHHH
Q 036303 528 MMLL-------------ADMIKMGIVPDAVINQVMVRGYQENG---------------DLKSAFRCSE 567 (605)
Q Consensus 528 ~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 567 (605)
.... +..+. -..++++|...+..|...+ |++.+.+.++
T Consensus 1375 ~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1375 IITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 8322 11111 2336888888888888777 7777766665
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-18 Score=175.24 Aligned_cols=432 Identities=10% Similarity=0.049 Sum_probs=298.0
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036303 107 YEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVV 186 (605)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (605)
|++.++.. +-+...|..++.. .+.|++++|..+|+++++.. |.+...|..++..+.+.|++++|..+|++.+...
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 56666654 3378889988884 77899999999999999873 4577789999999999999999999999998863
Q ss_pred CCcccHHHHHHHH-hccCChHHHHH----HHHHHHhC-CCCC-CcchHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 036303 187 PNLYTYNALMDGY-CKVADVNRALE----FYHEMLHH-NLQP-NVVTFGVLMDGLCK---------VGELRAAGNFFVHM 250 (605)
Q Consensus 187 p~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 250 (605)
|+...|...+... ...|+++.|.+ +|+..+.. |..| +...|...+..... .|+++.|..+|+.+
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5777777776533 34577776655 66666543 4333 34455555555443 56778888888887
Q ss_pred HHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH------H
Q 036303 251 AKFGVFPN--IFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMY------K 322 (605)
Q Consensus 251 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~ 322 (605)
++. +.+ ...|..........|. . +...++. ...+++..|..++..+. +
T Consensus 157 l~~--P~~~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~ 212 (530)
T 2ooe_A 157 CVN--PMINIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLD 212 (530)
T ss_dssp TTS--CCTTHHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred Hhc--hhhhHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhc
Confidence 762 211 1222222111100110 0 0011110 12344555655555422 1
Q ss_pred CC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh-------
Q 036303 323 EG---ILAN--------VVTYNSLIDGYCKE----GDM----EKALSVCSQMTEKGVEPNVVTFSSLIDGQCK------- 376 (605)
Q Consensus 323 ~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 376 (605)
.. ++|+ ...|...+...... ++. .++..+|++++... +.+...|..++..+..
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp SSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhh
Confidence 11 2333 23444444332221 222 47778898888763 4477888888888775
Q ss_pred cCCHH-------HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 036303 377 AGNID-------AAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSV-FTVSSLIHGLFKNG 448 (605)
Q Consensus 377 ~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 448 (605)
.|+++ +|..+|++.+..-.+.+...+..++..+...|++++|..+|+++++.. +.+. .+|..++..+.+.|
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhc
Confidence 68887 899999999863234467888889999999999999999999999863 2233 57888888888999
Q ss_pred CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHH-HHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 036303 449 RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQA-LCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLD 526 (605)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 526 (605)
++++|+++|++++... +.+...+...+.. +...|++++|.++|+++++ ..| +...|..++..+.+.|+.++
T Consensus 371 ~~~~A~~~~~~Al~~~-----~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~--~~p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDA-----RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHTCT-----TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHTTTTCHHH
T ss_pred CHHHHHHHHHHHHhcc-----CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhCCCHhh
Confidence 9999999999998753 2223333322222 3358999999999999988 445 46689899999999999999
Q ss_pred HHHHHHHHHHCC-CCcc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 527 VMMLLADMIKMG-IVPD--AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 527 A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
|..+|++++..+ ..|+ ..+|...+......|+.+.+.++.+++.+.-|++
T Consensus 444 Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 444 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 999999999753 3342 5588888888899999999999999999998853
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-18 Score=171.88 Aligned_cols=423 Identities=11% Similarity=0.091 Sum_probs=239.0
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVL 125 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 125 (605)
.|.+..+|..++. +.+.|++++|..+|+++ ..|.+...|..++..+.+.|++++|..+|++++... |+...|...
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 4557777777776 36677888888888776 345566777777777777788888888888777653 466666666
Q ss_pred HHHH-HccCChhHHHH----HHHHHHhC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCc
Q 036303 126 IDCC-CGQGDVMKALN----LFDEMIDK-GIEP-TVVIYTILIHGLCN---------ENKMVEAESMFRSMRECGVVPNL 189 (605)
Q Consensus 126 ~~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~ 189 (605)
+... ...|+.+.|.+ +|+..+.. |..| +...|...+..... .|+++.|..+|++.++. |..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~ 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMI 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhh
Confidence 6433 34566666554 55555432 3322 34556655554443 44555555555555542 211
Q ss_pred ---ccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 036303 190 ---YTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLI 266 (605)
Q Consensus 190 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 266 (605)
..|..........|. .+...++. ...+++..|..++......
T Consensus 163 ~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~------------- 207 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETV------------- 207 (530)
T ss_dssp THHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHH-------------
T ss_pred hHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHH-------------
Confidence 111111110000000 00000000 0112233333333321100
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC---CCCC--------hhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCC
Q 036303 267 DGHCKAGNLFEAMSLCSEMEKFE---ISPD--------VFTYNILIKGLCGV----GQL----EGAEGLLQKMYKEGILA 327 (605)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~~~~~~ 327 (605)
....+.. ++|+ ...|...+...... ++. +.+..+|+++.... +.
T Consensus 208 ----------------~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~ 270 (530)
T 2ooe_A 208 ----------------MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GH 270 (530)
T ss_dssp ----------------HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TT
T ss_pred ----------------HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CC
Confidence 0011100 1121 12233322221111 121 35556666666542 33
Q ss_pred CHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 328 NVVTYNSLIDGYCK-------EGDME-------KALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK 393 (605)
Q Consensus 328 ~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 393 (605)
+...|..++..+.+ .|+++ +|..++++..+.-.+.+...+..++..+...|++++|..+|++++..
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 56666666666554 56665 77777777775212345667777777777778888888888877775
Q ss_pred CCCCC-H-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhccCCCCCC
Q 036303 394 SLVPD-V-VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHG-LFKNGRISNALNFFLEKTDKTDGGYCS 470 (605)
Q Consensus 394 ~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~ 470 (605)
.|+ . ..|..++..+.+.|++++|..+|++.++.. +.+...+...+.. +...|+.++|..+|+..++.. +
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-----p 422 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----G 422 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-----T
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-----C
Confidence 333 2 467777777777777888888888877653 2233333322222 335788888888888877763 3
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 471 PNHVLYAAIIQALCYDGQILKASKLFSDMRSDN-LRPD--NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 471 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.+...|..++..+...|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+..+..++.+
T Consensus 423 ~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 423 DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777788888888888888888888887753 2332 33666777777777888888888887775
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-16 Score=164.21 Aligned_cols=413 Identities=13% Similarity=0.107 Sum_probs=310.2
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKIEVL-----PAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTY 122 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 122 (605)
...+|.-....+.+|...|.+.+|+++++++... .+....+.++.+.++. +..+..+..+++... + .
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~ 1052 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---A 1052 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---H
Confidence 3458888889999999999999999999998422 3345667777777777 556666666665432 1 3
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc
Q 036303 123 GVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKV 202 (605)
Q Consensus 123 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 202 (605)
..+...+...|.+++|..+|++... .....+.+ +...+++++|.++.++.. +..+|..+..++...
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhC
Confidence 3477888899999999999999631 22222333 227788999999888652 567899999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036303 203 ADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLC 282 (605)
Q Consensus 203 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 282 (605)
|++++|++.|.+. .+...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|.+.+++++.....
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 9999999999663 477788999999999999999999999888754 34444456889999999988644442
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 036303 283 SEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEP 362 (605)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 362 (605)
. .++...|..+...|...|++++|..+|..+ ..|..++.++.+.|+++.|.+.+++..
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------
Confidence 2 356667778999999999999999999885 378999999999999999999998772
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
+..+|..+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++..+... +-....+..++.
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 5688888899999999999998876542 3366677889999999999999999999888765 445556666666
Q ss_pred HHHh--cCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHH-------------HHHHHhCCCCCC
Q 036303 443 GLFK--NGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKL-------------FSDMRSDNLRPD 507 (605)
Q Consensus 443 ~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~~p~ 507 (605)
.+++ -++.-+++++|.+-....+--....+...|..+...|.+.|+++.|... |+..+. ...|
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n 1400 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVAN 1400 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--cccc
Confidence 6654 4567777777776655211000113567788899999999999988832 222222 2345
Q ss_pred HHHHHHHHHHHHh
Q 036303 508 NCTYTTMLRGLLR 520 (605)
Q Consensus 508 ~~~~~~l~~~~~~ 520 (605)
+..|...+.-|..
T Consensus 1401 ~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1401 VELYYRAIQFYLE 1413 (1630)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-19 Score=174.43 Aligned_cols=265 Identities=11% Similarity=-0.004 Sum_probs=189.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 036303 295 FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQ 374 (605)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (605)
..+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..++.++
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344555555555566666666666655543 2345555555556666666666666666555543 22455555566666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHH----------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHH
Q 036303 375 CKAGNIDAAMGLYTEMVIKSLVPDVVVFT----------------ALIDGLSKDGNMKETLRLYKEMLEAKITP--SVFT 436 (605)
Q Consensus 375 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~ 436 (605)
...|++++|...++++...... +...+. .+.. +...|++++|...++++++.. +. +..+
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~ 219 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDV 219 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHH
Confidence 6666666666666665554211 111111 2333 338899999999999999875 33 5888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTML 515 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 515 (605)
+..++.++...|++++|+..+++++... +.+..++..++.++...|++++|+..++++.+ ..| +...+..+.
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~ 292 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-----PNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLG 292 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 9999999999999999999999998863 45678899999999999999999999999988 445 466889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCc----------cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 516 RGLLRAKRMLDVMMLLADMIKMGIVP----------DAVINQVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 516 ~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
.+|...|++++|...++++++..... ...+|..++.+|...|++++|..++++..+
T Consensus 293 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 99999999999999999998632111 168999999999999999999998876554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-18 Score=170.01 Aligned_cols=391 Identities=12% Similarity=-0.053 Sum_probs=233.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCC-CcccHHHHHHHHhccCChHHHHHHHHHHHhC-----C
Q 036303 153 TVVIYTILIHGLCNENKMVEAESMFRSMREC-----G--VVP-NLYTYNALMDGYCKVADVNRALEFYHEMLHH-----N 219 (605)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 219 (605)
....|+.+..++...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++.... +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567888888888889999999888877542 1 112 3456778888888888888888888876542 1
Q ss_pred -CC-CCcchHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCC
Q 036303 220 -LQ-PNVVTFGVLMDGLCK--VGELRAAGNFFVHMAKFGVFPNIFVYNCLIDG---HCKAGNLFEAMSLCSEMEKFEISP 292 (605)
Q Consensus 220 -~~-~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 292 (605)
.. ....++.....++.. .+++++|...|+++.+.. |.+...+..+..+ +...++.++|++.+++..+.+ +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 01 123345545444444 345788888888877653 2334444444433 334566777777777776643 23
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHH
Q 036303 293 DVFTYNILIKGLCG----VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFS 368 (605)
Q Consensus 293 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (605)
+..++..+...+.. .+++++|...+++..... +.+...+..+...|...|++++|...++++.+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 44455444444433 356677777777776654 3456677777777888888888888888777763 23555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036303 369 SLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG 448 (605)
Q Consensus 369 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (605)
.+..+|...+.... ... ...........+.++.|...+++..+.+ +.+..++..++..+...|
T Consensus 286 ~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 66555533211110 000 0000011112234678888888888765 556677888999999999
Q ss_pred CHHHHHHHHHHhhhccCCCCCCccH--HHHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 449 RISNALNFFLEKTDKTDGGYCSPNH--VLYAAIIQ-ALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRML 525 (605)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 525 (605)
++++|+..|++++.... .+.. ..+..+.. .....|++++|+..|+++++ +.|+....... ..
T Consensus 349 ~~~~A~~~~~kaL~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~ 413 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKEL----TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KD 413 (472)
T ss_dssp CHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HH
T ss_pred cHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HH
Confidence 99999999999987531 1211 12223332 24578999999999999998 67775543322 23
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCC
Q 036303 526 DVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETE 580 (605)
Q Consensus 526 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 580 (605)
.+.+++++.++.. +.++.+|..++.+|...|++++|++.|+++++.+|..+.+.
T Consensus 414 ~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 414 KLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 4455666666532 33688999999999999999999999999999988876553
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-19 Score=170.17 Aligned_cols=307 Identities=10% Similarity=-0.050 Sum_probs=187.5
Q ss_pred HHhccCChHHHHH-HHHHHHhCCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 036303 198 GYCKVADVNRALE-FYHEMLHHNL---QPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAG 273 (605)
Q Consensus 198 ~~~~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (605)
++...|++++|++ .+++...... ..+...+..++..+...|++++|...++.+.+.. +.+...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3444455566655 5554433210 0123445555555556666666666666555543 334445555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 274 NLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCS 353 (605)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (605)
++++|...|+++.+.. +.+..++..+...+...|++++|...++++...... +...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh------
Confidence 5555555555555433 234445555555555555555555555555544211 11111000000 00
Q ss_pred HHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 036303 354 QMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVP-DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITP 432 (605)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (605)
. .. ....+..+...+ ..|++++|...++++....... +..++..+...+...|++++|...++++++.. +.
T Consensus 178 ----~-~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 ----G-AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred ----h-hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 00 000111233333 7889999999999888764221 47788888899999999999999999988865 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD----- 507 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----- 507 (605)
+..++..++.++...|++++|+..|++++... +.+..++..++.++...|++++|...++++.+. .|+
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 322 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-----PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPR 322 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCcc
Confidence 67888999999999999999999999988763 456788889999999999999999999998872 232
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 508 -------NCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 508 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
..+|..+..++...|++++|..++.+.+
T Consensus 323 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 323 GEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp --CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred ccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 4689999999999999999998876443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-19 Score=169.23 Aligned_cols=264 Identities=8% Similarity=-0.035 Sum_probs=185.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 036303 295 FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQ 374 (605)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (605)
..+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..++.+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555666666666666666665543 2345566666666666666666666666666543 23455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC---------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 036303 375 CKAGNIDAAMGLYTEMVIKSLV---------PDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITP--SVFTVSSLIHG 443 (605)
Q Consensus 375 ~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 443 (605)
...|++++|...++++...... .....+..+...+...|++++|...++++++.. +. +..++..++..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHH
Confidence 6666666666666666554100 012233445778888999999999999998875 33 68889999999
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 036303 444 LFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAK 522 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 522 (605)
+...|++++|+..|++++... +.+..+|..++.++...|++++|+..|+++.+ ..|+ ..++..+..+|...|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-----PEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCC
Confidence 999999999999999998864 55688899999999999999999999999988 4554 668889999999999
Q ss_pred CHHHHHHHHHHHHHCCCC-----------ccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036303 523 RMLDVMMLLADMIKMGIV-----------PDAVINQVMVRGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (605)
++++|...++++++.... .+..+|..++.++...|+.+.|.++.++
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999863211 0267899999999999999988877655
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=164.22 Aligned_cols=269 Identities=10% Similarity=-0.038 Sum_probs=181.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 036303 298 NILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKA 377 (605)
Q Consensus 298 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (605)
..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 334444444444444444444444432 2234444444444445555555555555444432 22344444455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHH-------------H-HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 378 GNIDAAMGLYTEMVIKSLVPDVVVFTA-------------L-ID-GLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 378 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l-~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
|++++|...++++...... +...+.. + .. .+...|++++|...++++.+.. +.+..++..++.
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 5555555555555443211 1111111 1 22 3677889999999999998875 557888999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRA 521 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 521 (605)
.+...|++++|+..+++++... +.+...+..++.++...|++++|++.++++.+ ..| +...+..+..++...
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-----PDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998763 45678888999999999999999999999987 344 466888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCc-----------cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 522 KRMLDVMMLLADMIKMGIVP-----------DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 522 g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
|++++|...++++++..... +..++..++.++.+.|++++|...++++.+..|+..
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 99999999999998643221 477889999999999999999999887776655443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-18 Score=159.73 Aligned_cols=284 Identities=16% Similarity=0.127 Sum_probs=114.0
Q ss_pred HhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHH
Q 036303 63 SEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLF 142 (605)
Q Consensus 63 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 142 (605)
-+.|++++|.++++++.. +.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..+
T Consensus 14 ~~~~~ld~A~~fae~~~~---~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE---PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 356778888888887733 247888888888888888888888542 46667777788888888888888877
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCC
Q 036303 143 DEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQP 222 (605)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 222 (605)
+...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 766654 3456677778888888888887776664 256668888888888888888888888755
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036303 223 NVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIK 302 (605)
Q Consensus 223 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (605)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.....++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHH
Confidence 36777888888888888888888777 26677888888888888888885544432 223333445777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCc------CHHHHHHHHHHHH
Q 036303 303 GLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEK-GVEP------NVVTFSSLIDGQC 375 (605)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~ 375 (605)
.|.+.|.+++|..+++...... +.-...|+.+.-+|++- ++++..+.++...+. +++| +...|..+...|.
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888777654 44556666666666554 334443333333222 2222 3456777777788
Q ss_pred hcCCHHHHHHH
Q 036303 376 KAGNIDAAMGL 386 (605)
Q Consensus 376 ~~~~~~~a~~~ 386 (605)
..++++.|...
T Consensus 294 ~~~e~d~A~~t 304 (449)
T 1b89_A 294 KYEEYDNAIIT 304 (449)
T ss_dssp HTTCHHHHHHH
T ss_pred hhchHHHHHHH
Confidence 88888877653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-17 Score=162.61 Aligned_cols=393 Identities=11% Similarity=-0.044 Sum_probs=237.7
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcC-----------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKIE-----------VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCG-- 114 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 114 (605)
.+....+|+.++..+...|++++|++.|++.. .+....+|+.++.+|...|++++|...++++....
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 33455678889999999999999999987651 23345678888999999999999998888776431
Q ss_pred ---C--CCCHHhHHHHHHHHHc--cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC
Q 036303 115 ---L--VADVVTYGVLIDCCCG--QGDVMKALNLFDEMIDKGIEPTVVIYTILIHG---LCNENKMVEAESMFRSMRECG 184 (605)
Q Consensus 115 ---~--~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~ 184 (605)
. .....++.....++.. .+++++|+..|++.++.. |-++..+..+..+ +...++.++|++.+++..+.+
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 0 1134556665555544 456889999999888774 2245555555544 344677788888888887764
Q ss_pred CCCCcccHHHHHHHHh----ccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 036303 185 VVPNLYTYNALMDGYC----KVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIF 260 (605)
Q Consensus 185 ~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 260 (605)
+. +..++..+...+. ..+++++|.+.+++..... +.+..++..++..+...|++++|...++++.+.. |.+..
T Consensus 206 p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 206 PD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp SS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred Cc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 33 4555555554443 3467788888888887753 4566778888888888999999999888887754 34555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036303 261 VYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYC 340 (605)
Q Consensus 261 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 340 (605)
++..+..+|...+... .... ... ........+.++.|...+++....+ +.+..++..+...+.
T Consensus 283 ~~~~lg~~y~~~~~~~---------~~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQV---------MNLR-ENG------MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---------hhHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence 6666665553321111 0000 000 0011111234677888888877654 334556777888888
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 036303 341 KEGDMEKALSVCSQMTEKGVEPNVV--TFSSLID-GQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKE 417 (605)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 417 (605)
..|++++|...|+++.+....+... .+..+.. .....|+.++|+..|.+.+.. .|+...... ....
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~ 414 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDK 414 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHH
Confidence 8899999999998888764433221 2222332 234678899999999888876 343322221 2234
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHH
Q 036303 418 TLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLY 476 (605)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (605)
+..++++.+..+ +.+..++..++.++...|++++|++.|+++++..+ ..|+..+|
T Consensus 415 l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~---~~p~a~~~ 469 (472)
T 4g1t_A 415 LQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS---LIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCCcHhhc
Confidence 455666666655 66778899999999999999999999999887643 24444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-18 Score=163.81 Aligned_cols=262 Identities=11% Similarity=-0.017 Sum_probs=165.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036303 262 YNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCK 341 (605)
Q Consensus 262 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (605)
+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|+..|+++.+.. +.+..++..++..|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 4444444444445555555544444432 2334444455555555555555555555554432 2234455555555555
Q ss_pred cCCHHHHHHHHHHHhhCCCC---------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHh
Q 036303 342 EGDMEKALSVCSQMTEKGVE---------PNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLV-PDVVVFTALIDGLSK 411 (605)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 411 (605)
.|++++|...++++.+..+. .....+..+...+...|++++|...++++...... ++..++..+...+..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 55555555555555443110 01223334567777888888888888888876322 156778888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHH
Q 036303 412 DGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILK 491 (605)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 491 (605)
.|++++|...++++++.. +.+..++..++.++...|++++|+..|++++... +.+..++..++.+|...|++++
T Consensus 226 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-----PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHCCCHHH
Confidence 888888888888888765 5567788888888888999999999998888763 4457788888888889999999
Q ss_pred HHHHHHHHHhCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 492 ASKLFSDMRSDNLRP-------------DNCTYTTMLRGLLRAKRMLDVMMLLAD 533 (605)
Q Consensus 492 A~~~~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 533 (605)
|...|+++.+. .| +...|..+..++...|+.+.+.....+
T Consensus 300 A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999888762 22 256788899999999999888776554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-17 Score=153.64 Aligned_cols=246 Identities=11% Similarity=0.060 Sum_probs=106.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036303 270 CKAGNLFEAMSLCSEMEKFEISPDV--FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEK 347 (605)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 347 (605)
...|++..|+..++...... |+. .....+..+|...|+++.|+..++. . -+|+..++..+...+...++.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 34555555555554443321 221 2223344455555555555543322 1 12334444445555555555555
Q ss_pred HHHHHHHHhhCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 348 ALSVCSQMTEKGV-EPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEML 426 (605)
Q Consensus 348 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 426 (605)
|++.++++...+. +.+...+..+...+...|++++|++.+++ +.+...+..++..+...|++++|...++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555544332 22333444444555555555555555443 2344444444455555555555555555554
Q ss_pred HCCCCCCHH-HH--HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 036303 427 EAKITPSVF-TV--SSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDN 503 (605)
Q Consensus 427 ~~~~~~~~~-~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 503 (605)
+.. |+.. .. ...+..+...|++++|+.+|++++... +.+...++.++.++...|++++|+..++++++
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-----p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~-- 228 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-----SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD-- 228 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 432 2211 10 111122222344444444444444432 23344444444444444444444444444444
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 036303 504 LRP-DNCTYTTMLRGLLRAKRMLD-VMMLLADMIK 536 (605)
Q Consensus 504 ~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 536 (605)
..| ++.++..++..+...|+.++ +.++++++++
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 222 22344444444444444433 2344444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-18 Score=160.57 Aligned_cols=282 Identities=13% Similarity=0.117 Sum_probs=109.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 96 KKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAES 175 (605)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 175 (605)
+.|++++|.++++++ +++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 567788888888776 23457888888888888888888888552 366677778888888888888888
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 176 MFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGV 255 (605)
Q Consensus 176 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (605)
.++..++. .+++.+.+.++.+|.+.|++.++.++++ .|+..++..++..|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77666653 3356667778888888888887777663 356667888888888888888888888765
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036303 256 FPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSL 335 (605)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 335 (605)
..|..++.++.+.|++++|++.+.++ .++.+|..++.+|...|+++.|......+ ...+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 35777788888888888888888777 25677788888888888888885444332 2233334467
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC------CHhhHHHHHHH
Q 036303 336 IDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK-SLVP------DVVVFTALIDG 408 (605)
Q Consensus 336 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~ 408 (605)
+..|.+.|.+++|..+++...... +-....|+.+..+|++- ++++..+.++....+ +++| +...|..+...
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 777778888888888887777654 33556666666666553 233333333322222 2222 34456666666
Q ss_pred HHhcCCHHHHHH
Q 036303 409 LSKDGNMKETLR 420 (605)
Q Consensus 409 ~~~~g~~~~a~~ 420 (605)
|...++++.|..
T Consensus 292 y~~~~e~d~A~~ 303 (449)
T 1b89_A 292 YDKYEEYDNAII 303 (449)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHhhchHHHHHH
Confidence 677777776655
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-17 Score=150.65 Aligned_cols=256 Identities=13% Similarity=0.051 Sum_probs=141.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 036303 304 LCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAA 383 (605)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 383 (605)
....|++..|+..++................+.++|...|+++.|+..++. . -+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 344566666666655543321111112334455666666666666654432 1 234555556666666666666666
Q ss_pred HHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036303 384 MGLYTEMVIKSLVP-DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTD 462 (605)
Q Consensus 384 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (605)
++.++++...+..| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.++++..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666554323 344445555566666666666666655 34555666666666666666666666666665
Q ss_pred ccCCCCCCccHH-H--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 463 KTDGGYCSPNHV-L--YAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGI 539 (605)
Q Consensus 463 ~~~~~~~~~~~~-~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 539 (605)
.. |+.. . ...++..+...|++++|..+|+++.+. .+.+...+..+..++.+.|++++|...++++++ .
T Consensus 159 ~~------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~ 229 (291)
T 3mkr_A 159 QD------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD--K 229 (291)
T ss_dssp HC------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred hC------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 42 2211 1 112223333446666666666666653 223444566666666666666666666666665 2
Q ss_pred Cc-cHHHHHHHHHHHHhcCChhH-HHHHHHHHHhcCCCCCC
Q 036303 540 VP-DAVINQVMVRGYQENGDLKS-AFRCSEFLKESRIGSSE 578 (605)
Q Consensus 540 ~~-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~ 578 (605)
.| ++.++..++.++...|+.++ +.++++++.+.+|+++.
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 33 46666666666666666654 34566666666666543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-17 Score=154.72 Aligned_cols=273 Identities=9% Similarity=-0.023 Sum_probs=125.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG 131 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (605)
.+..++..+...|++++|+.+|+++ ..+.+..++..++.++...|++++|...|+++.... +.+..++..+..++..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3445555555555555555555544 123344444455555555555555555555554442 2234444444444444
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH-HH-HHhccCChHHHH
Q 036303 132 QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNAL-MD-GYCKVADVNRAL 209 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~-~~~~~~~~~~a~ 209 (605)
.|++++|...++++.+.... +...+..+... .|+......+ .. .+...|++++|.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 55555555555444443211 11111111000 0000000111 11 244555666666
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036303 210 EFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFE 289 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 289 (605)
+.++++.... +.+...+..++..+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 159 TLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 6666655542 2344555555555556666666666665555432 2334455555555555555666655555554432
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 290 ISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILA-----------NVVTYNSLIDGYCKEGDMEKALSVCS 353 (605)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (605)
+.+..++..+...+...|++++|...++++....... +...+..+..++...|++++|..+++
T Consensus 237 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 237 -PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2234445555555555555555555555554432110 23444455555555555555555444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-17 Score=158.21 Aligned_cols=347 Identities=12% Similarity=-0.041 Sum_probs=208.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 036303 57 TLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKF---DSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQG 133 (605)
Q Consensus 57 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (605)
.++..+.+.|++++|+.+|+++....+..++..+...+...|+. ++|...|++.... ++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 36667778888888888888774334555666677777777777 7888888887754 5556666666454544
Q ss_pred -----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCCCcccHHHHHHHHhccCCh
Q 036303 134 -----DVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVE---AESMFRSMRECGVVPNLYTYNALMDGYCKVADV 205 (605)
Q Consensus 134 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 205 (605)
++++|+..|++..+.|. ...+..|...|...+..++ +.+.+......| +...+..+...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 67788888888887652 2366667777776554333 444444444433 455666777777777765
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc----CCHHHH
Q 036303 206 NRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVG---ELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKA----GNLFEA 278 (605)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a 278 (605)
+++.+....+.+.-...++..+..+...|...| +.++|...|+...+.| +++...+..+...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 555544333332212234447777777887788 7888888888887776 34444445566666544 678888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHH
Q 036303 279 MSLCSEMEKFEISPDVFTYNILIKG-L--CGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEG-----DMEKALS 350 (605)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~ 350 (605)
+..|+... +-+...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|..
T Consensus 237 ~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 237 QALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 88888876 2345555556555 3 45678888888888877765 6666777776666 44 7888888
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHH
Q 036303 351 VCSQMTEKGVEPNVVTFSSLIDGQCK----AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSK----DGNMKETLRLY 422 (605)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 422 (605)
.|++.. . -+...+..+...|.. ..++++|...|++....| +......+...|.. ..+..+|...|
T Consensus 309 ~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 309 HFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 887776 3 255666666666665 337788888888777665 33445556665553 34777788888
Q ss_pred HHHHHCC
Q 036303 423 KEMLEAK 429 (605)
Q Consensus 423 ~~~~~~~ 429 (605)
+...+.|
T Consensus 382 ~~A~~~g 388 (452)
T 3e4b_A 382 QLAKAQD 388 (452)
T ss_dssp HHHHTTC
T ss_pred HHHHHCC
Confidence 7777765
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-16 Score=140.16 Aligned_cols=199 Identities=14% Similarity=0.057 Sum_probs=148.5
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036303 361 EPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSL 440 (605)
Q Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 440 (605)
+++...+..+...+...|++++|+..|++++... +.+...+..+...+...|++++|...+++.++.+ |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3455666777777777778888877777777663 3356677777777777888888888888877765 5566777777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 036303 441 IHGLFKN-----------GRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC 509 (605)
Q Consensus 441 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 509 (605)
+.++... |++++|+..|++++... +.+...+..+..++...|++++|+..|+++++.. .+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~ 152 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-----PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPE 152 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchH
Confidence 7777777 99999999999998864 4567888899999999999999999999999865 6778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLK 570 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 570 (605)
.+..+..++...|++++|+..++++++ ..| +..++..++.++.+.|++++|...++++-
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 899999999999999999999999997 345 68889999999999999999999888763
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-16 Score=152.66 Aligned_cols=223 Identities=12% Similarity=0.011 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHhhHH
Q 036303 331 TYNSLIDGYCKEG---DMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKA----GNIDAAMGLYTEMVIKSLVPDVVVFT 403 (605)
Q Consensus 331 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 403 (605)
.+..+...|...| +.++|+..|++..+.|. ++...+..+...|... +++++|+..|++.. . -++..+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 4444444444444 44555555555554432 2333333344444332 45555555555554 2 2333444
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhhhccCCCCCCccHHH
Q 036303 404 ALIDG-L--SKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG-----RISNALNFFLEKTDKTDGGYCSPNHVL 475 (605)
Q Consensus 404 ~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~ 475 (605)
.+... + ...+++++|...|++..+.| +......++..|. .| ++++|+..|++.. . .++..
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-------g~~~A 320 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-------REVAA 320 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-------TCHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-------CCHHH
Confidence 44444 2 34556666666666655543 4445555555554 33 6666666666554 1 23344
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHHHHH
Q 036303 476 YAAIIQALCY----DGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLR----AKRMLDVMMLLADMIKMGIVPDAVINQ 547 (605)
Q Consensus 476 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 547 (605)
+..+...|.. ..++++|..+|+++.+.|. ......|...|.. ..++.+|...++++.+.|. ++.....
T Consensus 321 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l 396 (452)
T 3e4b_A 321 DYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLA 396 (452)
T ss_dssp HHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHH
Confidence 4455555544 3466666666666665432 2233344444442 3466666666666665552 2222222
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 548 VMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
..+......++..+|....++-++..+
T Consensus 397 ~~l~~~~~~~~~~~a~~~~~~~~~~~~ 423 (452)
T 3e4b_A 397 TQLEAPLTPAQRAEGQRLVQQELAARG 423 (452)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 222223334455566666655555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-16 Score=142.65 Aligned_cols=240 Identities=14% Similarity=0.096 Sum_probs=189.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHH
Q 036303 331 TYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPD--VVVFTALIDG 408 (605)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 408 (605)
.+......+...|++++|...++++.+..+ .+...+..+..++...|++++|+..++++...+..++ ...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 345566677888888888888888887643 3455777788888888899999988888887431121 2347788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC
Q 036303 409 LSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ 488 (605)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 488 (605)
+...|++++|...+++..+.. +.+..++..++.++...|++++|+..+++++... +.+...+..++..+...++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-----TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-----CCcHHHHHHHHHHHHHHHH
Confidence 999999999999999998865 5567789999999999999999999999998863 4567777777734445569
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCcc------HHHHHHHHHHHHhcC
Q 036303 489 ILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKR---MLDVMMLLADMIKMG-IVPD------AVINQVMVRGYQENG 557 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g 557 (605)
+++|++.++++.+ ..|+ ...+..+..++...|+ +++|...++++++.. -.|+ ..++..++.+|...|
T Consensus 158 ~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 158 YVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 9999999999998 4555 5577788888888888 888999999988632 1133 367888999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCCC
Q 036303 558 DLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 558 ~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
++++|...++++.+.+|++...
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 236 DKVKADAAWKNILALDPTNKKA 257 (272)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHhcCccHHHH
Confidence 9999999999999999987644
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-16 Score=141.77 Aligned_cols=227 Identities=11% Similarity=0.079 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HhhHH
Q 036303 330 VTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLV--PD----VVVFT 403 (605)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 403 (605)
..+..+...+...|++++|...++++.+.. .+...+..+..++...|++++|...+.++...... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666666666666666666654 45566666666666777777777766666654211 11 45667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHH
Q 036303 404 ALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQAL 483 (605)
Q Consensus 404 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 483 (605)
.+...+...|++++|...++++.+.. |+. ..+...|++++|+..+++..... +.+...+..++.++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-----PEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-----cchHHHHHHHHHHH
Confidence 77777778888888888888777753 342 34556677888888888887752 34566778888888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHH
Q 036303 484 CYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAF 563 (605)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 563 (605)
...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++++.. +.+..++..++.+|.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 88899999999998888732 2346678888888888999999999999888743 225888888999999999999999
Q ss_pred HHHHHHHhcCC
Q 036303 564 RCSEFLKESRI 574 (605)
Q Consensus 564 ~~~~~~~~~~~ 574 (605)
..++++.+.+|
T Consensus 228 ~~~~~a~~~~~ 238 (258)
T 3uq3_A 228 ETLDAARTKDA 238 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhCh
Confidence 99999988873
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-15 Score=138.87 Aligned_cols=222 Identities=14% Similarity=0.129 Sum_probs=151.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cC----HHHHHH
Q 036303 296 TYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVE--PN----VVTFSS 369 (605)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 369 (605)
.+..+...+...|++++|...++++.+.. .+...+..+...+...|++++|...++++.+.... ++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44555556666666666666666666554 45556666666666666666666666666553211 11 456666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036303 370 LIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGR 449 (605)
Q Consensus 370 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (605)
+..++...|++++|...++++... .|+. ..+...|++++|...++++.... +.+...+..++..+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 777777777777777777777665 2332 23455567778888888777754 4455667777788888888
Q ss_pred HHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 036303 450 ISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVM 528 (605)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 528 (605)
+++|+..+++++... +.+...+..++.++...|++++|++.++++.+ ..|+ ...+..+..++...|++++|.
T Consensus 155 ~~~A~~~~~~a~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-----PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 888888888887753 44567777888888888888888888888877 3344 557778888888888888888
Q ss_pred HHHHHHHH
Q 036303 529 MLLADMIK 536 (605)
Q Consensus 529 ~~~~~~~~ 536 (605)
..++++++
T Consensus 228 ~~~~~a~~ 235 (258)
T 3uq3_A 228 ETLDAART 235 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888876
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-14 Score=130.03 Aligned_cols=227 Identities=11% Similarity=-0.035 Sum_probs=182.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 036303 328 NVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK----AGNIDAAMGLYTEMVIKSLVPDVVVFT 403 (605)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 403 (605)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++....+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566677777777788888888888877773 245667777777777 888888888888887764 667777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhccCCCCCCccHHH
Q 036303 404 ALIDGLSK----DGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFK----NGRISNALNFFLEKTDKTDGGYCSPNHVL 475 (605)
Q Consensus 404 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 475 (605)
.+...|.. .+++++|...|++..+.+ +...+..++..+.. .+++++|+..|++..+. .+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a 148 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-------NDGDG 148 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------CcHHH
Confidence 78888887 888888888888888764 67778888888888 88999999999888873 24566
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHHHHH
Q 036303 476 YAAIIQALCY----DGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLR----AKRMLDVMMLLADMIKMGIVPDAVINQ 547 (605)
Q Consensus 476 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 547 (605)
+..+...|.. .+++++|+..++++.+.+ +...+..+...|.. .+++++|+..++++++.+ +...+.
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 222 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 222 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHH
Confidence 7777788877 889999999999988743 45677788888888 899999999999998854 377888
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhcCCCC
Q 036303 548 VMVRGYQE----NGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 548 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 576 (605)
.++.+|.. .|++++|..+++++.+.+|++
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 89999999 999999999999999988764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.5e-16 Score=134.49 Aligned_cols=196 Identities=15% Similarity=0.059 Sum_probs=121.9
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 036303 50 FNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLID 127 (605)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 127 (605)
.++..+..++..+.+.|++++|+..|+++ ..|.+..++..+..++.+.|++++|+..|++..+..+ .+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 45566777777777777888777777766 3556677777777777777777777777777777643 25667777777
Q ss_pred HHHcc-----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 036303 128 CCCGQ-----------GDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALM 196 (605)
Q Consensus 128 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 196 (605)
++... |++++|+..+++.++.. |.+...+..+..++...|++++|+..|++..+.+ .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77777 77777777777666653 2245566666666667777777777776666655 3556666666
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 197 DGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHM 250 (605)
Q Consensus 197 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (605)
.++...|++++|+..|++.++.. +.+...+..+...+...|++++|...++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666666542 334555556666666666666666665554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-15 Score=142.70 Aligned_cols=240 Identities=13% Similarity=0.088 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 036303 329 VVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGN-IDAAMGLYTEMVIKSLVPDVVVFTALID 407 (605)
Q Consensus 329 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 407 (605)
...|..+...+...|++++|+..+++++...+ .+...|..+..++...|+ +++|+..|++++... +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 34567777788888889999999998888743 367788888888888896 999999999988874 336778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc-c
Q 036303 408 GLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY-D 486 (605)
Q Consensus 408 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 486 (605)
++...|++++|+..|+++++.+ +.+..+|..++.++...|++++|+..|++++... +.+..+|+.+..++.. .
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-----P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-----VRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTT
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999876 6678899999999999999999999999999874 5568889999999888 6
Q ss_pred CCHHHH-----HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcC
Q 036303 487 GQILKA-----SKLFSDMRSDNLRPD-NCTYTTMLRGLLRAK--RMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENG 557 (605)
Q Consensus 487 g~~~~A-----~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 557 (605)
|..++| +..++++++ +.|+ ...|..+..++...| ++++|++.+.++ + ..| +..++..++++|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHh
Confidence 665777 588999988 5665 458888888888877 689999999887 3 445 6888999999999875
Q ss_pred --------C-hhHHHHHHHHH-HhcCCCCCCCCc
Q 036303 558 --------D-LKSAFRCSEFL-KESRIGSSETEG 581 (605)
Q Consensus 558 --------~-~~~A~~~~~~~-~~~~~~~~~~~~ 581 (605)
+ +++|+.+++++ .+.+|.......
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~ 357 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKDTIRKEYWR 357 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhCchhHHHHH
Confidence 3 58999999999 898886554433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.5e-15 Score=134.02 Aligned_cols=243 Identities=10% Similarity=0.018 Sum_probs=110.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--CHHHHHHHHHHHHhcCC
Q 036303 302 KGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEP--NVVTFSSLIDGQCKAGN 379 (605)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 379 (605)
..+...|++++|+..++++.+... .+...+..+...+...|++++|...++++.+....+ ....+..+...+...|+
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 334444444444444444443321 122233344444444444444444444444321000 11224444444444555
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 380 IDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLE 459 (605)
Q Consensus 380 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (605)
+++|+..++++.... +.+...+..+...+...|++++|...+++.++.. +.+..++..++..+...+++++|++.|++
T Consensus 90 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444432 1233444455555555555555555555555442 33444444444222233355555555555
Q ss_pred hhhccCCCCCCccHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 036303 460 KTDKTDGGYCSPNHVLYAAIIQALCYDGQ---ILKASKLFSDMRSDN-LRPD------NCTYTTMLRGLLRAKRMLDVMM 529 (605)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A~~ 529 (605)
+++.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ...|..+...|...|++++|..
T Consensus 168 a~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 168 VLELK-----PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHS-----TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhC-----ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55542 2234444455555555554 555555555555410 1122 1345556666666666666666
Q ss_pred HHHHHHHCCCCc-cHHHHHHHHHHHH
Q 036303 530 LLADMIKMGIVP-DAVINQVMVRGYQ 554 (605)
Q Consensus 530 ~~~~~~~~~~~~-~~~~~~~l~~~~~ 554 (605)
.++++++ +.| +..++..+.....
T Consensus 243 ~~~~al~--~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 243 AWKNILA--LDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHH--HCTTCHHHHHHHC----
T ss_pred HHHHHHh--cCccHHHHHHHhhhhhc
Confidence 6666665 334 4555555544433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-14 Score=130.32 Aligned_cols=207 Identities=14% Similarity=0.048 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036303 364 VVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHG 443 (605)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (605)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567777788888888888888888887763 3466778888888889999999999999888765 5577888888999
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 036303 444 LFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAK 522 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 522 (605)
+...|++++|+++++++.... ..+.+...+..++.++...|++++|.+.++++.+. .| +...+..++..+...|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDT---LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCT---TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHhCc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcC
Confidence 999999999999999988711 12446777888899999999999999999999873 34 4668888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 523 RMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
++++|...++++++.. +.+...+..++.++...|++++|.+.++++.+.+|++..
T Consensus 190 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp CHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999998732 336788889999999999999999999999999887653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-12 Score=131.27 Aligned_cols=148 Identities=11% Similarity=0.154 Sum_probs=104.7
Q ss_pred HHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCC---hhHHHHHHH
Q 036303 69 EEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGD---VMKALNLFD 143 (605)
Q Consensus 69 ~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~ 143 (605)
.+-+..|+.. .++.+...|..++..+.+.+.++.+..+|++++.. .+.....|...+..-.+.|+ ++.+..+|+
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 3444444443 46678899999999999999999999999999887 55577888888888888888 999999999
Q ss_pred HHHhCC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CCC-cccHHHHHHHHhc---------c
Q 036303 144 EMIDKG-IEPTVVIYTILIHGLCNENKM--------VEAESMFRSMRE-CGV-VPN-LYTYNALMDGYCK---------V 202 (605)
Q Consensus 144 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~p~-~~~~~~l~~~~~~---------~ 202 (605)
+.+... .+|++..|...+....+.++. +.+.++|+..+. .|. .|+ ...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 998873 137888888887766665543 334477776554 355 443 3567776665432 2
Q ss_pred CChHHHHHHHHHHHh
Q 036303 203 ADVNRALEFYHEMLH 217 (605)
Q Consensus 203 ~~~~~a~~~~~~~~~ 217 (605)
++++.+..+|++.+.
T Consensus 208 ~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHh
Confidence 346677788888775
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-12 Score=131.91 Aligned_cols=456 Identities=9% Similarity=0.056 Sum_probs=287.3
Q ss_pred CcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCC---hhHHHH
Q 036303 31 PHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGK---FDSVWE 105 (605)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~~A~~ 105 (605)
+.+....+-+.+.. .|.+...|..++..+.+.+.++.+..+|+++ ..|.....|...+..-.+.++ ++.+..
T Consensus 48 ~~d~i~~lE~~l~~---np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEE---QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHH---CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 33333344444444 5679999999999999999999999999988 366778899999999899999 999999
Q ss_pred HHHHHHHCCC-CCCHHhHHHHHHHHHccCCh--------hHHHHHHHHHHhC-CC-CC-CHHHHHHHHHHHHh-------
Q 036303 106 FYEEMVLCGL-VADVVTYGVLIDCCCGQGDV--------MKALNLFDEMIDK-GI-EP-TVVIYTILIHGLCN------- 166 (605)
Q Consensus 106 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~~-~~-~~-~~~~~~~l~~~~~~------- 166 (605)
+|++.+...+ +|++..|...+....+.++. +...++|+..+.. |. .+ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999998731 37888999888877766554 3455788876653 55 44 45688888876542
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 036303 167 --ENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAG 244 (605)
Q Consensus 167 --~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 244 (605)
.++++.+..+|+..+.. |... +..+-..| ...... + +..+...++.- ...+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~i---P~~~-~~~~w~~Y-------------~~fe~~-~--~~~~a~~~~~e--~~~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQ---PMDC-LESMWQRY-------------TQWEQD-V--NQLTARRHIGE--LSAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTS---CCSS-HHHHHHHH-------------HHHHHH-H--CTTTHHHHHHH--HHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC---ccHH-HHHHHHHH-------------HHHHHh-c--CcchHHHHHHH--hhHHHHHHH
Confidence 34577889999998863 3221 11111111 111110 0 00111111111 112333344
Q ss_pred HHHHHHHH--CCC----CCC-------------------HhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCC
Q 036303 245 NFFVHMAK--FGV----FPN-------------------IFVYNCLIDGHCKAG-------NLFEAMSLCSEMEKFEISP 292 (605)
Q Consensus 245 ~~~~~~~~--~~~----~~~-------------------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~ 292 (605)
..+.++.. .++ +.. ...|...+..-...+ ....+..+|++.... .+-
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~ 341 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCF 341 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTT
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCC
Confidence 44433221 011 000 123333333222221 123455677777664 245
Q ss_pred ChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---------Cc
Q 036303 293 DVFTYNILIKGLCGVGQLEGAE-GLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGV---------EP 362 (605)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~ 362 (605)
....|...+..+...|+.++|. .++++.... .+.+...|...+....+.|+++.|..+|+++..... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 6677777777778888888886 888888765 344666677777778888889999988888876310 12
Q ss_pred ------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCC
Q 036303 363 ------------NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKD-GNMKETLRLYKEMLEAK 429 (605)
Q Consensus 363 ------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~ 429 (605)
....|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|..+|+..++.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 12356677777777788888888888887751122233444333333333 4578888888888875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 036303 430 ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC 509 (605)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 509 (605)
.+.+...+...+......|+.+.|..+|+.++..... .......|...+..-...|+.+.+.++.+++.+ ..|+..
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~--~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~ 575 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD--SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVN 575 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS--TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCC
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCc
Confidence 3556666777777777788888888888888875310 012456677777777788888888888888887 445554
Q ss_pred HHHHHHHHH
Q 036303 510 TYTTMLRGL 518 (605)
Q Consensus 510 ~~~~l~~~~ 518 (605)
....+++-|
T Consensus 576 ~~~~f~~ry 584 (679)
T 4e6h_A 576 KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 444444444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-15 Score=133.50 Aligned_cols=208 Identities=12% Similarity=0.040 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
....+..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 34556666777777788888888888777653 3356677777788888888888888888887764 456777888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAK 522 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (605)
.+...|++++|++.++++.... +.+...+..++.++...|++++|+..++++.+.. +.+...+..++..+...|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-----MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-----CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcC
Confidence 8888888888888888888763 4566778888888889999999999999888732 235667888888899999
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 523 RMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
++++|...++++++.. +.+..++..++.+|...|++++|...++++.+.+|++...
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 229 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229 (243)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHH
Confidence 9999999999988742 2357888899999999999999999999999988876543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-14 Score=125.70 Aligned_cols=209 Identities=11% Similarity=-0.009 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
+...+..++..+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45566777777778888888888887777653 3356677777788888888888888888887764 456777888888
Q ss_pred HHHhc-CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 036303 443 GLFKN-GRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLR 520 (605)
Q Consensus 443 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 520 (605)
.+... |++++|+..+++++... ..+.+...+..++.++...|++++|+..++++.+ ..| +...+..++.++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADP---TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKELARTKML 159 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTST---TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCc---CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHH
Confidence 88888 88888888888887711 1234467778888888889999999999988887 334 46678888888889
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 521 AKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 521 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.|++++|...++++++.....+...+..++..+...|+.++|..+++.+.+.+|++..
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999998886432135777778888888999999999999998888877553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-14 Score=135.84 Aligned_cols=248 Identities=9% Similarity=-0.018 Sum_probs=183.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 036303 295 FTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGD-MEKALSVCSQMTEKGVEPNVVTFSSLIDG 373 (605)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (605)
..|..+...+...|++++|+..+++++... +-+...|..+..++...|+ +++|+..++++++..+ .+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 456666677777788888888888877764 3366777777777888885 8888888888877643 367778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 036303 374 QCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFK-NGRISN 452 (605)
Q Consensus 374 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 452 (605)
+...|++++|+..|++++... +-+...|..+..++...|++++|+..++++++.+ +.+..+|..++.++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 888888888888888888764 3366777888888888888888888888888876 5577788888888887 555577
Q ss_pred H-----HHHHHHhhhccCCCCCCccHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--
Q 036303 453 A-----LNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDG--QILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAK-- 522 (605)
Q Consensus 453 A-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-- 522 (605)
| +..|++++... +.+...|..+..++...| ++++|++.++++ + ..| +...+..++.+|...|
T Consensus 254 A~~~~el~~~~~Al~l~-----P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-----PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcc
Confidence 7 47788887753 455778888888888877 578888888887 3 344 4557788888887764
Q ss_pred -------CHHHHHHHHHHH-HHCCCCc-cHHHHHHHHHHHHhc
Q 036303 523 -------RMLDVMMLLADM-IKMGIVP-DAVINQVMVRGYQEN 556 (605)
Q Consensus 523 -------~~~~A~~~~~~~-~~~~~~~-~~~~~~~l~~~~~~~ 556 (605)
.+++|+++++++ ++ +.| ....|..++..+...
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHH
Confidence 258899999888 65 556 466777776655543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.7e-14 Score=127.59 Aligned_cols=224 Identities=13% Similarity=-0.003 Sum_probs=142.0
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 036303 50 FNPSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIK----KGKFDSVWEFYEEMVLCGLVADVVTYGVL 125 (605)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 125 (605)
.++.++..++..+...|++++|+..|++...+.+..++..+...+.. .+++++|...|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35666777777777777777777777766445556677777777777 777777777777777664 56667777
Q ss_pred HHHHHc----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 036303 126 IDCCCG----QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCN----ENKMVEAESMFRSMRECGVVPNLYTYNALMD 197 (605)
Q Consensus 126 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 197 (605)
..++.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +..++..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 777777 777777777777777653 55666667777776 677777777777766653 3445555555
Q ss_pred HHhc----cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 036303 198 GYCK----VADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCK----VGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGH 269 (605)
Q Consensus 198 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (605)
.+.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+..+...|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 6655 666666666666665542 33445555555555 556666666665555543 134444455555
Q ss_pred Hh----cCCHHHHHHHHHHHHhC
Q 036303 270 CK----AGNLFEAMSLCSEMEKF 288 (605)
Q Consensus 270 ~~----~~~~~~a~~~~~~~~~~ 288 (605)
.. .+++++|...|++..+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHc
Confidence 55 55555555555555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.5e-15 Score=134.65 Aligned_cols=245 Identities=12% Similarity=-0.100 Sum_probs=139.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 036303 306 GVGQLEGAEGLLQKMYKEGIL---ANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDA 382 (605)
Q Consensus 306 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 382 (605)
..|++++|+..++++.+.... .+..++..+...+...|++++|...++++.+.. +.+...+..++.++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 446677777777777665221 124456666667777777777777777776653 2356666667777777777777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036303 383 AMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTD 462 (605)
Q Consensus 383 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (605)
|...++++.... +.+...+..+...+...|++++|...++++.+.. |+..........+...|++++|+..+.+...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777766653 2245566666666777777777777777766643 2222222223333455667777777666655
Q ss_pred ccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 463 KTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-----NCTYTTMLRGLLRAKRMLDVMMLLADMIKM 537 (605)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 537 (605)
.. +++...+ .++..+...++.++|.+.++++.+ ..|+ ...+..++.++...|++++|...++++++.
T Consensus 173 ~~-----~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 173 KS-----DKEQWGW-NIVEFYLGNISEQTLMERLKADAT--DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HS-----CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-----CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc--ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 43 2222222 244555556666666666666654 2221 345566666666666666666666666652
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 036303 538 GIVPDAVINQVMVRGYQENGDLKSAFRCS 566 (605)
Q Consensus 538 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 566 (605)
.|+. +...+.++...|++++|+..+
T Consensus 245 --~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 --NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred --Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 3321 122244556666666666554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=124.37 Aligned_cols=169 Identities=15% Similarity=0.080 Sum_probs=146.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHH
Q 036303 398 DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYA 477 (605)
Q Consensus 398 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (605)
+...|..+...|...|++++|+..|++.++.+ |.+..++..++.++.+.|++++|+..+....... +.+...+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-----TTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----chhHHHHH
Confidence 56778888999999999999999999998876 5678888999999999999999999999988764 45577778
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHh
Q 036303 478 AIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQE 555 (605)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 555 (605)
.+...+...++++.|...++++.+ ..| +...+..+..++...|++++|++.++++++ +.| +..++..++.+|.+
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhhhHHHHHHHHHHH
Confidence 888888999999999999999887 445 455888889999999999999999999997 445 68899999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCC
Q 036303 556 NGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 556 ~g~~~~A~~~~~~~~~~~~~~ 576 (605)
.|++++|+..++++.+.+|++
T Consensus 154 ~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTHHH
T ss_pred CCCHHHHHHHHHHHHhCCccC
Confidence 999999999999999998864
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.8e-15 Score=144.79 Aligned_cols=210 Identities=10% Similarity=0.030 Sum_probs=138.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHhhHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIK----S-LVPDVVVFTALIDGLSKDGN-----------------MKETLRLYK 423 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~ 423 (605)
.+..+...|...|++++|...+.++... + .+....++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 3444445555555555555555544432 0 01122345555666666666 666666666
Q ss_pred HHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CccHHHHHHHHHHHHccCCHHHHHHHHH
Q 036303 424 EMLEA----KI-TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC-SPNHVLYAAIIQALCYDGQILKASKLFS 497 (605)
Q Consensus 424 ~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (605)
+.++. +. +....++..++..+...|++++|+..+++.+......+. ......+..++.++...|++++|+..++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 65432 11 112346777788888889999999988888764321100 0112367788889999999999999999
Q ss_pred HHHhCC--CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcCChhHHHHHHH
Q 036303 498 DMRSDN--LR---PDNCTYTTMLRGLLRAKRMLDVMMLLADMIKM----GIVP-DAVINQVMVRGYQENGDLKSAFRCSE 567 (605)
Q Consensus 498 ~~~~~~--~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 567 (605)
++.+.. .. ....++..+...+...|++++|...++++++. +..+ ...++..++.+|.+.|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 887621 10 01457788888999999999999999998752 1111 25688899999999999999999999
Q ss_pred HHHhcCCC
Q 036303 568 FLKESRIG 575 (605)
Q Consensus 568 ~~~~~~~~ 575 (605)
++.+..+.
T Consensus 368 ~al~~~~~ 375 (411)
T 4a1s_A 368 QHLQLAXX 375 (411)
T ss_dssp HHHHHCCH
T ss_pred HHHHHHhh
Confidence 99887654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-14 Score=132.10 Aligned_cols=249 Identities=9% Similarity=-0.086 Sum_probs=118.1
Q ss_pred cCCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036303 272 AGNLFEAMSLCSEMEKFEI---SPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKA 348 (605)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 348 (605)
.|++++|+..++++.+... +.+..++..+...+...|++++|...++++.... +.+...+..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4555556666655555321 1123445555555555566666666655555543 22455555555555556666666
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 349 LSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA 428 (605)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 428 (605)
...++++.+.. +.+...+..+..++...|++++|...++++... .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 66665555542 223455555555555566666666665555544 222222222233334445555666555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 036303 429 KITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN 508 (605)
Q Consensus 429 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (605)
. +++...+ .++..+...++.++|+..+.+........ .+.+...+..++.++...|++++|...|+++.+ ..|+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSL-AEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccc-cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh
Confidence 2 2222222 24444445555555555555554431000 000134455555555555666666666655554 33322
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 036303 509 CTYTTMLRGLLRAKRMLDVMMLL 531 (605)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~ 531 (605)
. .....++...|++++|++.+
T Consensus 249 ~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--HHHHHHHHHHHHHHHC----
T ss_pred H--HHHHHHHHHHHHHHhhHHHH
Confidence 1 12233444455555554443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.8e-15 Score=142.31 Aligned_cols=231 Identities=12% Similarity=0.000 Sum_probs=149.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----CcCHHHHHHHHHHHHhcCC--------------------HHHHHH
Q 036303 331 TYNSLIDGYCKEGDMEKALSVCSQMTEKGV-----EPNVVTFSSLIDGQCKAGN--------------------IDAAMG 385 (605)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~a~~ 385 (605)
++..+...+...|++++|...++++.+... .....++..+...+...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344444455555555555555554443200 0012345555556666666 666666
Q ss_pred HHHHHHHC----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 036303 386 LYTEMVIK----SLV-PDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKI-TPS----VFTVSSLIHGLFKNGRISNALN 455 (605)
Q Consensus 386 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~ 455 (605)
.+.+.... +.. ....++..+...+...|++++|...+++.++... .++ ..++..++..+...|++++|+.
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66655432 111 1233566777778888888888888887765310 111 2367788888899999999999
Q ss_pred HHHHhhhccCCCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 036303 456 FFLEKTDKTDGGYCSPN-HVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRPD-NCTYTTMLRGLLRAKRMLDVMM 529 (605)
Q Consensus 456 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 529 (605)
.+++.+......+..+. ..++..++.++...|++++|.+.++++.+. +..+. ..++..+..+|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99888764322111111 456778889999999999999999998762 11111 4477888889999999999999
Q ss_pred HHHHHHHC----CCCc-cHHHHHHHHHHHHhcCChhH
Q 036303 530 LLADMIKM----GIVP-DAVINQVMVRGYQENGDLKS 561 (605)
Q Consensus 530 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~ 561 (605)
.++++++. +..+ ...++..++.++...|+...
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99998752 2222 36778889999999998744
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.9e-16 Score=155.99 Aligned_cols=150 Identities=14% Similarity=0.130 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 036303 84 IQACNALLNGLIKKGKFDSVWEFYEEMVL---CGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTIL 160 (605)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (605)
..+|+.++.+|++.|+.++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45799999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC------cchHHHHHHH
Q 036303 161 IHGLCNENKM-VEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPN------VVTFGVLMDG 233 (605)
Q Consensus 161 ~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 233 (605)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+ +.+++..+++ ..++.|+ ..+...|...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999984 7899999999999999999999988865544 3455555555 2234443 4455566666
Q ss_pred HHhcC
Q 036303 234 LCKVG 238 (605)
Q Consensus 234 ~~~~~ 238 (605)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-13 Score=122.78 Aligned_cols=164 Identities=9% Similarity=-0.006 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITP-SVFTVSSLIHGL 444 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 444 (605)
.+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.+..| +...+..++.++
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~ 151 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS 151 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH
Confidence 33333333333444444444443333321 1123333334444444444444444444444311111 233344444444
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036303 445 FKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRM 524 (605)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 524 (605)
...|++++|+..+++++... +.+...+..++.++...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSLRLN-----RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCH
Confidence 44445555555444444432 2234444445555555555555555555554421 12233444444455555555
Q ss_pred HHHHHHHHHHHH
Q 036303 525 LDVMMLLADMIK 536 (605)
Q Consensus 525 ~~A~~~~~~~~~ 536 (605)
++|.+.++++++
T Consensus 226 ~~A~~~~~~~~~ 237 (252)
T 2ho1_A 226 DTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-14 Score=128.68 Aligned_cols=213 Identities=12% Similarity=0.095 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 036303 329 VVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDG 408 (605)
Q Consensus 329 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 408 (605)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445556666667777777777777776653 3356666777777777777777777777776653 3356667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC
Q 036303 409 LSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ 488 (605)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 488 (605)
+...|++++|...++++.+.. +.+...+..++..+...|++++|+..+++++... +.+...+..++.++...|+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-----ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTC
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHcCC
Confidence 777788888888887777654 4566677777777888888888888888877653 4456677777888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 489 ILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
+++|++.++++.+.. +.+..++..+..++...|++++|...++++++. .| +..++..+...
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHMLALHAKKLL 236 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHHHHHHHHHH
Confidence 888888888877632 234557777888888888888888888888763 34 45555554433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=140.78 Aligned_cols=283 Identities=13% Similarity=0.079 Sum_probs=207.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-
Q 036303 292 PDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILAN----VVTYNSLIDGYCKEGDMEKALSVCSQMTEK----GVEP- 362 (605)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 362 (605)
.....+......+...|++++|...++++.+.+. .+ ...+..+...+...|++++|...++++... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3444555666677777777777777777776532 23 245667777788888888888888776543 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCC--------------------HHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLV-PD----VVVFTALIDGLSKDGN--------------------MKE 417 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~ 417 (605)
....+..+...+...|++++|...+.++...... ++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2456778889999999999999999988754110 11 3477788888999999 999
Q ss_pred HHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCc-cHHHHHHHHHHHHccCCHHH
Q 036303 418 TLRLYKEMLEA----KI-TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSP-NHVLYAAIIQALCYDGQILK 491 (605)
Q Consensus 418 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 491 (605)
|...+++.... +. +....++..++..+...|++++|+..+++.+......+..+ ...++..++.++...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999887653 11 11234678888999999999999999999887533211111 13477888999999999999
Q ss_pred HHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcCChhH
Q 036303 492 ASKLFSDMRSD----NLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKM----GIVP-DAVINQVMVRGYQENGDLKS 561 (605)
Q Consensus 492 A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~ 561 (605)
|...++++.+. +..+. ..++..+...+...|++++|...++++++. +..+ ...++..++.+|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999998762 11111 447788889999999999999999998752 2112 26688899999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 036303 562 AFRCSEFLKESRIG 575 (605)
Q Consensus 562 A~~~~~~~~~~~~~ 575 (605)
|...++++.+..+.
T Consensus 326 A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 326 AMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-14 Score=138.09 Aligned_cols=210 Identities=13% Similarity=0.041 Sum_probs=137.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHhcCC--------------------HHHHHH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSL-VPD----VVVFTALIDGLSKDGN--------------------MKETLR 420 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~ 420 (605)
.+..+...+...|++++|...+.+...... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 344455555555555555555555443200 001 2245555556666666 666666
Q ss_pred HHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CccHHHHHHHHHHHHccCCHHHHHH
Q 036303 421 LYKEMLEA----K-ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC-SPNHVLYAAIIQALCYDGQILKASK 494 (605)
Q Consensus 421 ~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 494 (605)
.+++.... + .+....++..++..+...|++++|+..+++........+. .....++..++.++...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66665432 1 1112346777788888899999999999887764321111 1113367788889999999999999
Q ss_pred HHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcCChhHHHH
Q 036303 495 LFSDMRSDNL-RPD----NCTYTTMLRGLLRAKRMLDVMMLLADMIKM----GIVP-DAVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 495 ~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
.++++.+... .++ ..++..+...+...|++++|...++++++. +..+ ...++..++.+|.+.|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 9998875210 111 447778888999999999999999998752 1111 25678899999999999999999
Q ss_pred HHHHHHhcCCC
Q 036303 565 CSEFLKESRIG 575 (605)
Q Consensus 565 ~~~~~~~~~~~ 575 (605)
.++++.+..++
T Consensus 325 ~~~~a~~~~~~ 335 (338)
T 3ro2_A 325 FAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHHh
Confidence 99999988764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-13 Score=124.91 Aligned_cols=225 Identities=12% Similarity=0.065 Sum_probs=170.1
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 036303 346 EKALSVCSQMTEKGVEPNVVTFSSLIDGQC-------KAGNI-------DAAMGLYTEMVIKSLVPDVVVFTALIDGLSK 411 (605)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (605)
++|..+|++++... +.+...|..++..+. ..|++ ++|..+|++.+..-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777653 346667766666654 34775 8888888888873123355678888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH-ccCCH
Q 036303 412 DGNMKETLRLYKEMLEAKITPSVF-TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC-YDGQI 489 (605)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~ 489 (605)
.|++++|..+|+++++.. +.+.. ++..++..+.+.|++++|+.+|++++... +.+...|...+.... ..|++
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-----RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-----TCCTHHHHHHHHHHHHTSCCH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHcCCH
Confidence 899999999999988753 22343 78888888888999999999999988753 233444444333322 36999
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCc--cHHHHHHHHHHHHhcCChhHHHHH
Q 036303 490 LKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMG-IVP--DAVINQVMVRGYQENGDLKSAFRC 565 (605)
Q Consensus 490 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 565 (605)
++|.++|+++++ ..| +...|..++..+.+.|++++|+.+|+++++.. ++| ...+|..++..+.+.|+.++|..+
T Consensus 186 ~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 186 SVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999987 344 45688888888889999999999999999853 455 367888899999999999999999
Q ss_pred HHHHHhcCCCCCCC
Q 036303 566 SEFLKESRIGSSET 579 (605)
Q Consensus 566 ~~~~~~~~~~~~~~ 579 (605)
++++.+..|++...
T Consensus 264 ~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 264 EKRRFTAFREEYEG 277 (308)
T ss_dssp HHHHHHHTTTTTSS
T ss_pred HHHHHHHccccccc
Confidence 99999999976544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-13 Score=118.68 Aligned_cols=199 Identities=10% Similarity=-0.011 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 036303 331 TYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLS 410 (605)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (605)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444444444444444444444432 1233444444444445555555555554444432 223344444555555
Q ss_pred hc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC
Q 036303 411 KD-GNMKETLRLYKEMLEAKITP-SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ 488 (605)
Q Consensus 411 ~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 488 (605)
.. |++++|...++++++.+..| +...+..++.++...|++++|+..+++++... +.+...+..++.++...|+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-----PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHTC
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCchHHHHHHHHHHHcCC
Confidence 55 55555555555555421111 23444555555555555555555555555432 2334455555555555666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 489 ILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+++|...++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666665555421102333444444455555666666555555543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-16 Score=156.45 Aligned_cols=120 Identities=15% Similarity=0.213 Sum_probs=110.7
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH
Q 036303 118 DVVTYGVLIDCCCGQGDVMKALNLFDEMID---KGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNA 194 (605)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 194 (605)
...+|+++|.+|++.|++++|.++|+.|.+ .|+.||+.+||.||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 036303 195 LMDGYCKVADV-NRALEFYHEMLHHNLQPNVVTFGVLMDGLCKV 237 (605)
Q Consensus 195 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (605)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 99999999985 78999999999999999999999888655443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.5e-14 Score=135.08 Aligned_cols=238 Identities=9% Similarity=-0.036 Sum_probs=178.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CHhhHH
Q 036303 335 LIDGYCKEGDMEKALSVCSQMTEK----GVEP-NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLV-P-----DVVVFT 403 (605)
Q Consensus 335 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 403 (605)
....+...|++++|...++++.+. +-++ ...++..+...|...|+++.|...+.+....... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677889999999999888764 1111 3457788888899999999999998887754111 1 234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CccHHHHH
Q 036303 404 ALIDGLSKDGNMKETLRLYKEMLEAKI-TPS----VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC-SPNHVLYA 477 (605)
Q Consensus 404 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~ 477 (605)
.+...|...|++++|...+++.++... .++ ..++..++.++...|++++|+..+++++......+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888889999999999999998875411 111 246888999999999999999999999874322222 33467788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCC---CCCCH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCc-cHHHHHHH
Q 036303 478 AIIQALCYDGQILKASKLFSDMRSDN---LRPDN-CTYTTMLRGLLRAKR---MLDVMMLLADMIKMGIVP-DAVINQVM 549 (605)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l 549 (605)
.++.++...|++++|...++++.+.. -.|.. ..+..+...+...|+ +++|+.++++. +..| ...++..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 99999999999999999999988621 01222 245667777888888 77777777654 3444 36688899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 550 VRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
+.+|...|++++|...++++.+....
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-14 Score=137.73 Aligned_cols=271 Identities=11% Similarity=0.011 Sum_probs=165.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHH
Q 036303 265 LIDGHCKAGNLFEAMSLCSEMEKFEISPDV----FTYNILIKGLCGVGQLEGAEGLLQKMYKE----G-ILANVVTYNSL 335 (605)
Q Consensus 265 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l 335 (605)
+...+...|++++|+..|+++.+.. +.+. ..+..+...+...|++++|...+++.... + .+.....+..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3344444555555555555544432 1111 23444444555555555555555544332 0 01122344555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC----C-CCcCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC
Q 036303 336 IDGYCKEGDMEKALSVCSQMTEK----G-VEPNVVTFSSLIDGQCKAGN-----------------IDAAMGLYTEMVIK 393 (605)
Q Consensus 336 ~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~ 393 (605)
...|...|++++|...++++.+. + .+....++..+...|...|+ +++|...+.+....
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55556666666666666555432 0 11123455566666666677 67777666665432
Q ss_pred ----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 036303 394 ----SL-VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKIT-PS----VFTVSSLIHGLFKNGRISNALNFFLEKTDK 463 (605)
Q Consensus 394 ----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (605)
+. ......+..+...+...|++++|...+++.++.... ++ ..++..++.++...|++++|+..+++++..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11 112346667777888888888888888887653210 11 236778888899999999999999888775
Q ss_pred cCCCCCC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 464 TDGGYCS-PNHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 464 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
....+.. ....++..+..++...|++++|...++++.+. +..+ ...++..+..+|...|++++|...++++++
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3211111 12466778889999999999999999998762 1111 133778888999999999999999999987
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-13 Score=129.97 Aligned_cols=234 Identities=8% Similarity=-0.027 Sum_probs=169.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--C----CcCHHHHH
Q 036303 300 LIKGLCGVGQLEGAEGLLQKMYKEGI-LAN----VVTYNSLIDGYCKEGDMEKALSVCSQMTEKG--V----EPNVVTFS 368 (605)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 368 (605)
....+...|++++|...+++....-. .++ ..++..+...|...|+++.|...+.+..+.. . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45566777888888888888776310 122 3467777888888888888888888776531 1 11235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 036303 369 SLIDGQCKAGNIDAAMGLYTEMVIKSLV-PD----VVVFTALIDGLSKDGNMKETLRLYKEMLEA----KI-TPSVFTVS 438 (605)
Q Consensus 369 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 438 (605)
.+..+|...|++++|...+.+....... ++ ..++..+...|...|++++|...+++.++. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888888999999999988887754111 11 236778888999999999999999998872 22 34466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ---ILKASKLFSDMRSDNLRPD-NCTYTTM 514 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 514 (605)
.++.++...|++++|...+++.+......+.+.....+..+...+...|+ .++|+.++++.. ..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence 89999999999999999999887743211112223345677888888898 778888887762 3343 3377788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 036303 515 LRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
...|...|++++|...++++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999999875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.9e-14 Score=131.20 Aligned_cols=244 Identities=14% Similarity=0.090 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-
Q 036303 330 VTYNSLIDGYCKEGDMEKALSVCSQMTEK-------GVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK------SL- 395 (605)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~- 395 (605)
.++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++++... +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34445555555555555555555555442 11223344555556666666666666666655543 11
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC-
Q 036303 396 VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA------KI-TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG- 467 (605)
Q Consensus 396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 467 (605)
+.....+..+...+...|++++|...++++++. +. +....++..++..+...|++++|+.++++++......
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 123345666666777777777777777776653 11 2234456777778888888888888888776641110
Q ss_pred --CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHH-------HHHHHHHHHHhcCCHHHHHHHH
Q 036303 468 --YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD-------NLRPDNC-------TYTTMLRGLLRAKRMLDVMMLL 531 (605)
Q Consensus 468 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~ 531 (605)
..+....++..++.++...|++++|.+.++++.+. ...+... .+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 01223456778888888889999999888888752 1222222 1222222333455666666667
Q ss_pred HHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 532 ADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 532 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
..... ..| +..++..++.+|.+.|++++|..+++++.++.|.
T Consensus 268 ~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 268 KACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 66664 234 5788999999999999999999999999988764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-13 Score=136.04 Aligned_cols=211 Identities=9% Similarity=-0.042 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036303 345 MEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNI-DAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYK 423 (605)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 423 (605)
++++...++...... +.+...+..+...+...|++ ++|+..|++++... +.+...+..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555555544432 33566666667777777777 77777777776653 2345667777777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc--------
Q 036303 424 EMLEAKITPSVFTVSSLIHGLFKN---------GRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD-------- 486 (605)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 486 (605)
+.++.. |+...+..++.++... |++++|+..|++++... +.+...|..++.+|...
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-----VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 777653 4566777777777777 88888888888887753 44567777888888777
Q ss_pred CCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhH
Q 036303 487 GQILKASKLFSDMRSDNLRP----DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKS 561 (605)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 561 (605)
|++++|++.|+++.+ +.| +...|..+..+|...|++++|...++++++ +.| +..++..++.++...|++++
T Consensus 235 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 235 KISQQALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887 455 566888888888888888888888888887 345 57788888888888888888
Q ss_pred HHHHHHH
Q 036303 562 AFRCSEF 568 (605)
Q Consensus 562 A~~~~~~ 568 (605)
|...+.+
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 8865543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-12 Score=111.81 Aligned_cols=165 Identities=13% Similarity=0.086 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
+...|..+...|...|++++|++.|+++++.. +.+...+..+..++...|++++|...+....... +.+...+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45566666666777777777777777666653 2355566666667777777777777777766654 445566666666
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRA 521 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 521 (605)
.+...++++.|...+.+..... +.+...+..++.++...|++++|++.|+++.+ +.| +...|..+..++...
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-----TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-----ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhhhHHHHHHHHHHHC
Confidence 6777777777777777766653 44566666777777777777777777777776 334 344677777777777
Q ss_pred CCHHHHHHHHHHHHH
Q 036303 522 KRMLDVMMLLADMIK 536 (605)
Q Consensus 522 g~~~~A~~~~~~~~~ 536 (605)
|++++|+..++++++
T Consensus 155 g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 155 GLRDEAVKYFKKALE 169 (184)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 777777777777776
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-11 Score=115.12 Aligned_cols=217 Identities=11% Similarity=0.053 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 036303 311 EGAEGLLQKMYKEGILANVVTYNSLIDGYC-------KEGDM-------EKALSVCSQMTEKGVEPNVVTFSSLIDGQCK 376 (605)
Q Consensus 311 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 376 (605)
++|...|+++.... +.+...|..++..+. ..|++ ++|..+|++.++.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666543 335566666665554 34664 7788888887773123355677777777778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-Hh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 036303 377 AGNIDAAMGLYTEMVIKSLVPD-VV-VFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLF-KNGRISNA 453 (605)
Q Consensus 377 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 453 (605)
.|++++|..+|++++.. .|+ .. .|..++..+.+.|++++|..+|++.++.. +++...+...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888765 333 33 67777777777888888888888887764 334444443333322 36888888
Q ss_pred HHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 036303 454 LNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDN-LRPD--NCTYTTMLRGLLRAKRMLDVMML 530 (605)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 530 (605)
+.+|+++++.. +.+...|..++..+...|++++|..+|+++++.. +.|+ ...|..++..+...|+.++|..+
T Consensus 189 ~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 189 FKIFELGLKKY-----GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHH-----TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHhC-----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888887764 4456777888888888888888888888888742 3443 44777777777788888888888
Q ss_pred HHHHHH
Q 036303 531 LADMIK 536 (605)
Q Consensus 531 ~~~~~~ 536 (605)
++++++
T Consensus 264 ~~~a~~ 269 (308)
T 2ond_A 264 EKRRFT 269 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888876
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=5e-13 Score=126.42 Aligned_cols=270 Identities=12% Similarity=0.057 Sum_probs=157.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHH
Q 036303 267 DGHCKAGNLFEAMSLCSEMEKFEISPD----VFTYNILIKGLCGVGQLEGAEGLLQKMYKE----GIL-ANVVTYNSLID 337 (605)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~ 337 (605)
..+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++.... +.. ....++..+..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 33444444444444444444322 111 123334444444444444444444443321 000 11233444555
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCC-CcC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 036303 338 GYCKEGDMEKALSVCSQMTEKGV-EPN----VVTFSSLIDGQCKAGN--------------------IDAAMGLYTEMVI 392 (605)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~ 392 (605)
.+...|++++|...++++.+... .++ ..++..+...+...|+ +++|...+.+...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 55555555555555555443200 001 2245555556666666 6666666655443
Q ss_pred C----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036303 393 K----SL-VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAK-----ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTD 462 (605)
Q Consensus 393 ~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (605)
. +. +.....+..+...+...|++++|...+++..+.. ......++..++..+...|++++|...+++.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 10 1123356667777888888888888888776431 011123677788888999999999999998876
Q ss_pred ccCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 463 KTDGGYCSP-NHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 463 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.....+..+ ...++..+..++...|++++|...++++.+. +..+ ...++..+..++...|++++|...++++++
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 432111111 1456778888999999999999999998762 1111 133777888999999999999999999987
Q ss_pred C
Q 036303 537 M 537 (605)
Q Consensus 537 ~ 537 (605)
.
T Consensus 332 ~ 332 (338)
T 3ro2_A 332 I 332 (338)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-12 Score=124.80 Aligned_cols=237 Identities=7% Similarity=-0.006 Sum_probs=174.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC--CC---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CC-CHhhH
Q 036303 334 SLIDGYCKEGDMEKALSVCSQMTEKG--VE---PNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSL-----VP-DVVVF 402 (605)
Q Consensus 334 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~ 402 (605)
.....+...|++++|...++++.+.. .+ ....++..+..+|...|+++.|...+.+...... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34556678899999999999887651 11 1245677888899999999999999988775311 11 23467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHH
Q 036303 403 TALIDGLSKDGNMKETLRLYKEMLEA----KIT-PSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYA 477 (605)
Q Consensus 403 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (605)
..+...|...|++++|...+++.++. +.+ ....++..++.++...|++++|+..+++++......+.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 78888899999999999999988763 111 1234678889999999999999999999887221111234467788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCC---CCCH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCc-cHHHHHHH
Q 036303 478 AIIQALCYDGQILKASKLFSDMRSDNL---RPDN-CTYTTMLRGLLRAKR---MLDVMMLLADMIKMGIVP-DAVINQVM 549 (605)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l 549 (605)
.++.++...|++++|...++++.+... .|.. ..+..+...+...++ +.+|+..+++ .+..| ....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHH
Confidence 999999999999999999999987311 2332 245555556667777 7777777765 33334 36677889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC
Q 036303 550 VRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
+..|...|++++|...++++.+..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.4e-13 Score=130.37 Aligned_cols=211 Identities=13% Similarity=0.042 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 310 LEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDM-EKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYT 388 (605)
Q Consensus 310 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 388 (605)
++++...++...... +.+...+..+...+...|++ ++|+..|+++.+.. +.+...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666655543 34677888888888888888 88888888888764 3367788888888999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 036303 389 EMVIKSLVPDVVVFTALIDGLSKD---------GNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKN--------GRIS 451 (605)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 451 (605)
+++.. .|+...+..+...+... |++++|...+++.++.. +.+...+..++.++... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88877 46677888888888888 99999999999998875 56788899999999888 9999
Q ss_pred HHHHHHHHhhhccCCCCCC---ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 036303 452 NALNFFLEKTDKTDGGYCS---PNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDV 527 (605)
Q Consensus 452 ~A~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 527 (605)
+|+..|++++... + .+...|..++.+|...|++++|++.|+++.+ +.|+ ...+..+..++...|++++|
T Consensus 239 ~A~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 239 QALSAYAQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998853 3 4788899999999999999999999999988 4555 44788888889889999888
Q ss_pred HHHHH
Q 036303 528 MMLLA 532 (605)
Q Consensus 528 ~~~~~ 532 (605)
+..+.
T Consensus 312 i~~~~ 316 (474)
T 4abn_A 312 LESKG 316 (474)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 87543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-11 Score=117.27 Aligned_cols=91 Identities=14% Similarity=-0.013 Sum_probs=41.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHH
Q 036303 266 IDGHCKAGNLFEAMSLCSEMEKFEISPDVF----TYNILIKGLCGVGQLEGAEGLLQKMYKEGI-LANV----VTYNSLI 336 (605)
Q Consensus 266 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~ 336 (605)
...+...|++++|...+++........+.. ++..+...+...|++++|...+++...... ..+. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334455666666666666655432111111 233444445555566666555555443210 0111 1233344
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 036303 337 DGYCKEGDMEKALSVCSQMT 356 (605)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~ 356 (605)
..+...|++++|...+++..
T Consensus 101 ~~~~~~G~~~~A~~~~~~al 120 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAF 120 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 44455555555555555443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-12 Score=114.39 Aligned_cols=201 Identities=10% Similarity=-0.005 Sum_probs=158.8
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036303 362 PNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLI 441 (605)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (605)
.++..+......+...|++++|+..|.+.+....+++...+..+..++...|++++|+..+++.++.+ +.+..++..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46678888899999999999999999999987643677778788899999999999999999999875 45677889999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhccCCCCCCccH-------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--H-HHH
Q 036303 442 HGLFKNGRISNALNFFLEKTDKTDGGYCSPNH-------VLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD--N-CTY 511 (605)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~-~~~ 511 (605)
.++...|++++|+..+++.+... +.+. ..|..+...+...|++++|++.|+++++ ..|+ . ..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~ 156 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDAL 156 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHH
Confidence 99999999999999999998864 3344 4577888888999999999999999987 5676 3 477
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 512 TTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
..+..++...| ...++++...+ ..+...+... .....|.+++|+..++++.+++|++..
T Consensus 157 ~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 157 YSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 77777776544 33455555533 2233334333 345667799999999999999998754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.1e-13 Score=135.94 Aligned_cols=168 Identities=15% Similarity=0.112 Sum_probs=144.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHH
Q 036303 398 DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYA 477 (605)
Q Consensus 398 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (605)
+...++.+...+...|++++|+..|++.++.. +.+..++..++.++.+.|++++|+..|+++++.. +.+..+|.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-----P~~~~a~~ 81 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-----PTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHH
Confidence 45678888888999999999999999988875 5567888899999999999999999999988863 44578889
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHh
Q 036303 478 AIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQE 555 (605)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 555 (605)
.++.++...|++++|++.|+++++ +.|+ ...|..+..++...|++++|+..++++++ +.| +..++..++.+|..
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHh
Confidence 999999999999999999999988 5565 45888999999999999999999999998 456 58889999999999
Q ss_pred cCChhHHHHHHHHHHhcCCC
Q 036303 556 NGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 556 ~g~~~~A~~~~~~~~~~~~~ 575 (605)
.|++++|.+.++++.+..|+
T Consensus 158 ~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTCCTTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhChh
Confidence 99999999999998887553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-12 Score=110.28 Aligned_cols=172 Identities=12% Similarity=0.059 Sum_probs=140.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHH
Q 036303 400 VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAI 479 (605)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 479 (605)
..+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.... +.+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~ 82 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-----PDNVKVATVL 82 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCHHHHHHH
Confidence 455666777778888888888888877654 4567778888888888899999999988888763 4567778888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCh
Q 036303 480 IQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDL 559 (605)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 559 (605)
+..+...|++++|.+.++++.+. .+.+...+..++.++...|++++|...++++++.. +.+..++..++.++...|++
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCH
Confidence 88899999999999999998873 23356688888899999999999999999998743 33688999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCC
Q 036303 560 KSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 560 ~~A~~~~~~~~~~~~~~~~~ 579 (605)
++|...++++.+.+|++...
T Consensus 161 ~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 161 EEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHHHcCCCchhh
Confidence 99999999999998876643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-12 Score=120.03 Aligned_cols=233 Identities=9% Similarity=0.008 Sum_probs=168.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCc-CHHHHH
Q 036303 300 LIKGLCGVGQLEGAEGLLQKMYKEGI-LAN----VVTYNSLIDGYCKEGDMEKALSVCSQMTEKG-----VEP-NVVTFS 368 (605)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~ 368 (605)
....+...|++++|...++++..... .++ ..++..+...|...|+++.|...++++.+.. ..+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456677888888888888765411 122 3456777778888888888888888776531 011 245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 036303 369 SLIDGQCKAGNIDAAMGLYTEMVIK----SLV-PDVVVFTALIDGLSKDGNMKETLRLYKEMLE-----AKITPSVFTVS 438 (605)
Q Consensus 369 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 438 (605)
.+..+|...|++++|...+.+.... +.. ....++..+..+|...|++++|...+++.++ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7888888899999998888877653 111 1234677788889999999999999998887 43 33467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ---ILKASKLFSDMRSDNLRPDN-CTYTTM 514 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l 514 (605)
.++.++.+.|++++|...+++.+......+.+.....+..+...+...++ +.+|+..+++.. ..|+. ..+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHH
Confidence 89999999999999999999988865443333444556666677777888 778888877632 33333 366788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 036303 515 LRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
...|...|++++|...++++++
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999998875
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-11 Score=108.96 Aligned_cols=208 Identities=10% Similarity=0.028 Sum_probs=164.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 036303 327 ANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALI 406 (605)
Q Consensus 327 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 406 (605)
.|+..+......+...|++++|...|+++.+...+++...+..+..++...|++++|+..+++..... +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46788889999999999999999999999998654678888889999999999999999999999874 33567888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc---HHHH
Q 036303 407 DGLSKDGNMKETLRLYKEMLEAKITPSV-------FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN---HVLY 476 (605)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~ 476 (605)
..+...|++++|...+++.++.. +.+. .++..++..+...|++++|+..|++++. ..|+ ...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~ 156 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD------VTSKKWKTDAL 156 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------SSCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh------cCCCcccHHHH
Confidence 99999999999999999999875 4455 5588888999999999999999999986 5565 5667
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
..++.++... +...++++...+ ..+...+.... ....+.+++|+..++++++ +.| +..+...+..+
T Consensus 157 ~~l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 157 YSLGVLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHHH
Confidence 7777777654 445566666532 22344444433 3356779999999999998 456 46666655544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=121.98 Aligned_cols=204 Identities=13% Similarity=0.036 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-C
Q 036303 331 TYNSLIDGYCKEGDMEKALSVCSQMTEK------G-VEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK------SL-V 396 (605)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~ 396 (605)
.+..+...+...|++++|...++++... + .+.....+..+...+...|++++|...++++... +. +
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444444455555555555555444432 1 1122344555555666666666666666555543 11 1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC--
Q 036303 397 PDVVVFTALIDGLSKDGNMKETLRLYKEMLEA------K-ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG-- 467 (605)
Q Consensus 397 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-- 467 (605)
.....+..+...+...|++++|..+++++++. + .+....++..++.++...|++++|+..+++++......
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 12345566666777777777777777776653 1 12223456677777778888888888887776531100
Q ss_pred -CCCc-------cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 468 -YCSP-------NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 468 -~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
...+ ....+......+...+.+.++...+++... ..|+ ..++..+..+|...|++++|...++++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0001 111122223333445566667777777665 2343 44788899999999999999999999876
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-10 Score=110.87 Aligned_cols=279 Identities=12% Similarity=0.011 Sum_probs=152.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCh----hhH
Q 036303 227 FGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIF----VYNCLIDGHCKAGNLFEAMSLCSEMEKFEI-SPDV----FTY 297 (605)
Q Consensus 227 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~ 297 (605)
.......+...|++++|...++.........+.. ++..+...+...|++++|...+++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556778999999999999988754222222 456677788899999999999998765211 1122 235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----cCHHH
Q 036303 298 NILIKGLCGVGQLEGAEGLLQKMYKE----GIL--A-NVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVE----PNVVT 366 (605)
Q Consensus 298 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 366 (605)
..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... .....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56777888999999999999887653 111 1 1234455666667777777777777766553211 01223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036303 367 FSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDV-VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLF 445 (605)
Q Consensus 367 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (605)
+..+...+...|++++|...+++.......++. ..+... .....+..+.
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~ 226 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN------------------------------ANKVRVIYWQ 226 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH------------------------------HHHHHHHHHH
Confidence 334444444445555555444444322100000 000000 0001222344
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHh
Q 036303 446 KNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRPDN-CTYTTMLRGLLR 520 (605)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~ 520 (605)
..|++++|...+++........ .......+..+..++...|++++|...++++... +..++. ..+..+..++..
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFAN-NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTT-CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 5566666666665554422110 0111223445555666666666666666665431 111122 144455556666
Q ss_pred cCCHHHHHHHHHHHHH
Q 036303 521 AKRMLDVMMLLADMIK 536 (605)
Q Consensus 521 ~g~~~~A~~~~~~~~~ 536 (605)
.|+.++|...+++++.
T Consensus 306 ~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 6777777776666654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.4e-12 Score=128.92 Aligned_cols=167 Identities=19% Similarity=0.126 Sum_probs=148.7
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVL 125 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 125 (605)
.|.++.+++.++..|.+.|++++|+..|+++ ..+.+..++..++.++.+.|++++|+..|+++++..+. +...|..+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 4557889999999999999999999999987 35667899999999999999999999999999988533 68899999
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCh
Q 036303 126 IDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADV 205 (605)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 205 (605)
..++...|++++|++.|++.++.. +-+..+++.+..+|.+.|++++|++.|++.++..+. +...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 999999999999999999999875 336889999999999999999999999999987544 677899999999999999
Q ss_pred HHHHHHHHHHHh
Q 036303 206 NRALEFYHEMLH 217 (605)
Q Consensus 206 ~~a~~~~~~~~~ 217 (605)
++|.+.+++.++
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998888764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-11 Score=102.55 Aligned_cols=165 Identities=15% Similarity=0.051 Sum_probs=133.0
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDC 128 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (605)
....+..++..+...|++++|...|+++. .+.+..++..++..+...|++++|...++++.... +.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34567788888999999999999998873 44567888888888999999999999999988774 3367788888888
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHH
Q 036303 129 CCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRA 208 (605)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 208 (605)
+...|++++|...++++.+.. +.+...+..+..++...|++++|...+++.....+. +..++..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHH
Confidence 888899999999998888764 346777888888888888888888888888776433 566777788888888888888
Q ss_pred HHHHHHHHhC
Q 036303 209 LEFYHEMLHH 218 (605)
Q Consensus 209 ~~~~~~~~~~ 218 (605)
.+.+++..+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888887664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-11 Score=113.71 Aligned_cols=233 Identities=13% Similarity=0.076 Sum_probs=162.2
Q ss_pred HhcCCHHHHHHHHHHHhhC-------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHhhHHHH
Q 036303 340 CKEGDMEKALSVCSQMTEK-------GVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIK------SL-VPDVVVFTAL 405 (605)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 405 (605)
...|+++.|..++++..+. ..+....++..+...+...|++++|...+.++... +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4566777777777666552 22334667888999999999999999999998864 21 2235578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC---CCCCccHHH
Q 036303 406 IDGLSKDGNMKETLRLYKEMLEA------K-ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDG---GYCSPNHVL 475 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~ 475 (605)
...+...|++++|...+++++.. . .+....++..++..+...|++++|+..+++++..... ...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998864 1 1334567888999999999999999999999986211 011223567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH----HCC-CCc-
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSD-------NLRPDNC-TYTTMLRGLLRAKRMLDVMMLLADMI----KMG-IVP- 541 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~- 541 (605)
+..++.++...|++++|...++++.+. ...+... .+..+...+...+....+.. +..+. ..+ ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 788999999999999999999998862 1233333 44444444443333222222 12111 111 223
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 542 DAVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
...++..++.+|...|++++|..+++++.+..
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 36788899999999999999999999998753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-11 Score=111.88 Aligned_cols=202 Identities=8% Similarity=-0.005 Sum_probs=128.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHH
Q 036303 373 GQCKAGNIDAAMGLYTEMVIK----SLVP-DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKI---TP--SVFTVSSLIH 442 (605)
Q Consensus 373 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~ 442 (605)
.|...|++++|...|.+.... +.++ ...++..+..+|...|++++|+..+++.++... .+ ...++..++.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555554432 1111 134556666666667777777776666654310 11 1346777888
Q ss_pred HHHhc-CCHHHHHHHHHHhhhccCCCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH------HHHHHH
Q 036303 443 GLFKN-GRISNALNFFLEKTDKTDGGYCSPN-HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN------CTYTTM 514 (605)
Q Consensus 443 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l 514 (605)
+|... |++++|+..|++++...+..+..+. ..++..++.++...|++++|+..|+++.+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 9999999999888875421111111 346778888999999999999999998883221111 146677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcc------HHHHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCC
Q 036303 515 LRGLLRAKRMLDVMMLLADMIKMGIVPD------AVINQVMVRGYQ--ENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
..++...|++++|+..+++.++ +.|+ ...+..++.++. ..+++++|+..|+++.+++|..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 7788889999999999998876 3443 223445666665 5677888888888887766643
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.4e-11 Score=107.23 Aligned_cols=176 Identities=10% Similarity=-0.051 Sum_probs=125.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHH
Q 036303 398 DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPS---VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHV 474 (605)
Q Consensus 398 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 474 (605)
+...+..+...+...|++++|...|+++++.. +.+ ..++..++.++...|++++|+..|++.+...+.. +....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~ 90 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID--PRVPQ 90 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--TTHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--chhHH
Confidence 44555566666777777777777777776653 223 5566677777777777777777777777654211 12244
Q ss_pred HHHHHHHHHHc--------cCCHHHHHHHHHHHHhCCCCCCHH-HH-----------------HHHHHHHHhcCCHHHHH
Q 036303 475 LYAAIIQALCY--------DGQILKASKLFSDMRSDNLRPDNC-TY-----------------TTMLRGLLRAKRMLDVM 528 (605)
Q Consensus 475 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~-~~-----------------~~l~~~~~~~g~~~~A~ 528 (605)
++..++.++.. .|++++|+..|+++++ ..|+.. .. ..+...|...|++++|+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 55666667766 7788888888888776 334322 22 56688899999999999
Q ss_pred HHHHHHHHCCCC-c-cHHHHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCCC
Q 036303 529 MLLADMIKMGIV-P-DAVINQVMVRGYQEN----------GDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 529 ~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
..++++++.... + ....+..++.+|... |++++|...++++.+..|++..
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 999999874321 1 367888999999977 9999999999999999998654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.33 E-value=8.2e-10 Score=98.98 Aligned_cols=185 Identities=9% Similarity=0.020 Sum_probs=105.8
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 036303 383 AMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKI-TPSVFTVSSLIHGLFKNGRISNALNFFLEKT 461 (605)
Q Consensus 383 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (605)
|+..+++....+ .++...+..+..++...|++++|++++.+.+..+. ..+...+..++..+.+.|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 33444444556666666667777666666655442 1345555566666666777777777776665
Q ss_pred hccCCCCCCc-----cHHHHHHHHHH--HHccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 462 DKTDGGYCSP-----NHVLYAAIIQA--LCYDG--QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLA 532 (605)
Q Consensus 462 ~~~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 532 (605)
+. .| +..+...++.+ ....| ++.+|..+|+++.+ ..|+..+-..++.++.+.|++++|.+.++
T Consensus 164 ~~------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 164 NA------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HH------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hc------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 53 34 23333334333 22223 67777777777765 34553332333336667777777777777
Q ss_pred HHHHC-----CC---Cc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 533 DMIKM-----GI---VP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 533 ~~~~~-----~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.+++. .. .| ++.++..++.+....|+ +|.++++++.+..|+++.
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 55531 00 13 56666566666666665 677777777777776553
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-10 Score=101.57 Aligned_cols=193 Identities=12% Similarity=0.044 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHH
Q 036303 364 VVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLV-P-DVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSV---FTVS 438 (605)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~ 438 (605)
...+..++..+...|++++|+..|++++..... | ....+..++.++...|++++|+..|+++++... .+. .++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHHH
Confidence 344455566666677777777777776654211 1 123555566667777777777777777666531 111 1344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HH------
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TY------ 511 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~------ 511 (605)
.++.++...|.. .+ ..|..+...+...|++++|+..|+++++ ..|+.. .+
T Consensus 83 ~~g~~~~~~~~~-----~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l 139 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL----------------QGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRL 139 (225)
T ss_dssp HHHHHHHHHHC-----------------------------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh----------------hhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHH
Confidence 444444432210 00 0011222233456788888888888887 445533 22
Q ss_pred -----------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 512 -----------TTMLRGLLRAKRMLDVMMLLADMIKMGIVPD----AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 512 -----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
..+...+...|++++|+..++++++. .|+ ..++..++.+|.+.|++++|...++++....|++
T Consensus 140 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 140 VFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 34566788999999999999999973 332 4678999999999999999999999999999988
Q ss_pred CCCCcc
Q 036303 577 SETEGH 582 (605)
Q Consensus 577 ~~~~~~ 582 (605)
.+-+.|
T Consensus 218 ~~~~~~ 223 (225)
T 2yhc_A 218 LEHHHH 223 (225)
T ss_dssp CCCTTC
T ss_pred hhhccc
Confidence 776554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-11 Score=103.18 Aligned_cols=129 Identities=12% Similarity=-0.037 Sum_probs=97.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRG 517 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 517 (605)
.++.++...|++++|+..|++.+... +.+...+..++.++...|++++|+..|+++++ +.|+ ...+..+..+
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-----PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHH
Confidence 37888889999999999999988864 45678888899999999999999999999988 5565 4578888887
Q ss_pred HHhcCC--HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 518 LLRAKR--MLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 518 ~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
|...|+ .+.+...+.+... ..|....+...+.++...|++++|...++++.+++|+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 132 YYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 766543 3445555555432 33334456667888888999999999999999998863
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-11 Score=110.75 Aligned_cols=185 Identities=9% Similarity=-0.069 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 036303 379 NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA----KITPS-VFTVSSLIHGLFKNGRISNA 453 (605)
Q Consensus 379 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A 453 (605)
++++|...|.+. +..|...|++++|...|.+.++. +-++. ..++..++.+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888887765 34577899999999999988764 21222 46788999999999999999
Q ss_pred HHHHHHhhhccCCCCCCc-cHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCH
Q 036303 454 LNFFLEKTDKTDGGYCSP-NHVLYAAIIQALCYD-GQILKASKLFSDMRSDNLRPD-------NCTYTTMLRGLLRAKRM 524 (605)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~ 524 (605)
+..|++++......+-.. -..++..++.+|... |++++|+..|+++++ +.|+ ..++..+...+...|++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 999999887543221111 145788899999996 999999999999987 3231 34688899999999999
Q ss_pred HHHHHHHHHHHHCCCCcc------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCC
Q 036303 525 LDVMMLLADMIKMGIVPD------AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETE 580 (605)
Q Consensus 525 ~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 580 (605)
++|+..++++++...... ...+..++.++...|++++|...++++.+.+|......
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 999999999998432221 12678899999999999999999999999999876543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.28 E-value=7.9e-11 Score=108.05 Aligned_cols=230 Identities=13% Similarity=0.070 Sum_probs=160.8
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-CCcCHHHHHHH
Q 036303 305 CGVGQLEGAEGLLQKMYKE-------GILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEK------G-VEPNVVTFSSL 370 (605)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 370 (605)
...|++++|+..+++..+. +.+....++..+...+...|++++|...++++.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776652 22234567888999999999999999999998764 1 12345678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHH
Q 036303 371 IDGQCKAGNIDAAMGLYTEMVIK------SL-VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA------K-ITPSVFT 436 (605)
Q Consensus 371 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 436 (605)
..++...|++++|...+.++... .. +.....+..+...+...|++++|...++++++. . .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998865 11 224567888899999999999999999999875 1 1223567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCC----CCCCccHHHHHHHHHHHHccCC------HHHHHHHHHHHHhCCCCC
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDG----GYCSPNHVLYAAIIQALCYDGQ------ILKASKLFSDMRSDNLRP 506 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~p 506 (605)
+..++.++...|++++|+.++++++..... .........|..+...+...+. +..+...++.... ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCH
Confidence 889999999999999999999999985211 0011222334344444433332 3333333333221 223
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 507 D-NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 507 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+ ..++..+..+|...|++++|...++++++
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 34788899999999999999999999875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=100.81 Aligned_cols=131 Identities=7% Similarity=-0.097 Sum_probs=99.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGL 518 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 518 (605)
|+..+...|++++|+..++...... +.+...+..+..+|...|++++|++.|+++++ +.|+ ...|..+..++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-----p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~ 75 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-----RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLY 75 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-----HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 4455666778888888888887642 33355566788888888999999999988887 5554 55888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHH-HHHHHhcCCCCCCC
Q 036303 519 LRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRC-SEFLKESRIGSSET 579 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~ 579 (605)
...|++++|+..++++++ +.| +..++..++.+|.+.|++++|... ++++.+++|+++..
T Consensus 76 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 76 ELEENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred HHcCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 889999999999998887 456 588888888899999988877664 58888888886543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-10 Score=102.49 Aligned_cols=83 Identities=13% Similarity=0.179 Sum_probs=61.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCcc
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRSDNLRPD----NCTYTTMLRGLLRA----------KRMLDVMMLLADMIKMGIVPD 542 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~ 542 (605)
..++.+|...|++++|+..|+++++ ..|+ ...+..+..+|... |++++|+..++++++. .|+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~ 227 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFD--AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPD 227 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCC
Confidence 5678889999999999999999988 3454 34677888888866 8999999999999973 343
Q ss_pred ----HHHHHHHHHHHHhcCChhHHH
Q 036303 543 ----AVINQVMVRGYQENGDLKSAF 563 (605)
Q Consensus 543 ----~~~~~~l~~~~~~~g~~~~A~ 563 (605)
......+..++.+.|+++++.
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345555666666666555443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-09 Score=94.28 Aligned_cols=174 Identities=8% Similarity=-0.020 Sum_probs=110.2
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 036303 383 AMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG----RISNALNFFL 458 (605)
Q Consensus 383 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 458 (605)
|+..|++..+.+ ++..+..+...|...+++++|...|++..+.+ +...+..+...|.. + ++++|+++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 455555555543 55556666666666667777777776666643 45556666666655 4 6777777777
Q ss_pred HhhhccCCCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh----cCCHHHH
Q 036303 459 EKTDKTDGGYCSPNHVLYAAIIQALCY----DGQILKASKLFSDMRSDNLRPD---NCTYTTMLRGLLR----AKRMLDV 527 (605)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A 527 (605)
+..+ ..++.++..+...|.. .+++++|+++|+++.+. .|+ +..+..|...|.. .+++++|
T Consensus 78 ~A~~-------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 78 KAVE-------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--SESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHH-------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHH-------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--CCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 7654 2345556666666665 66777777777777663 232 4566666667766 6677777
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHhcCC
Q 036303 528 MMLLADMIKMGIVPDAVINQVMVRGYQEN-G-----DLKSAFRCSEFLKESRI 574 (605)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 574 (605)
+..++++.+. ..++..+..++.+|... | ++++|..+++++.+.+.
T Consensus 149 ~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7777777764 23445666777776643 2 77777777777777653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.3e-10 Score=98.23 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=94.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHH
Q 036303 404 ALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQAL 483 (605)
Q Consensus 404 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 483 (605)
.+..++...|++++|+..|++.++.. |.+...+..++.++...|++++|+..|++++... +.+..+|..++.+|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-----ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHH
Confidence 37777888888888888888888765 5567788888888888888888888888888764 45577777777777
Q ss_pred HccCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 036303 484 CYDGQ--ILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVR 551 (605)
Q Consensus 484 ~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 551 (605)
...|+ .+.+...++++.. ..|....+.....++...|++++|+..|+++++ +.|+......+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 65543 3455666665542 222223344455566677888888888888886 5676554444433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6.4e-10 Score=88.83 Aligned_cols=133 Identities=10% Similarity=0.110 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTML 515 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 515 (605)
.+..++..+...|++++|+.+++++.... +.+...+..++..+...|++++|.+.++++.+.+ +.+...+..++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-----CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHH
Confidence 45667777888888888888888887753 4456777788888888899999999999888732 23456788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 516 RGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 516 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
..+...|++++|...++++++.. +.+..++..++.++...|++++|...++++.+.+|+
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88999999999999999988743 235788888999999999999999999999988875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.23 E-value=6.9e-09 Score=93.01 Aligned_cols=244 Identities=12% Similarity=0.107 Sum_probs=151.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036303 269 HCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKA 348 (605)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 348 (605)
..-.|++..++.-. .+.....+......+..++...|++... ....|....+..+...+ ..+ +
T Consensus 23 ~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 34467777666632 2211111222223344666666666532 12234444444444333 322 6
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 349 LSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSL-VPDVVVFTALIDGLSKDGNMKETLRLYKEMLE 427 (605)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 427 (605)
+..+++..+.+ +++...+..+..++...|++++|++++.+.+..+. .-+...+..+++.+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777776654 34555566778888888888888888888866543 13556677778888888999999999988877
Q ss_pred CCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 036303 428 AKITP-----SVFTVSSLIHG--LFKNG--RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSD 498 (605)
Q Consensus 428 ~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 498 (605)
. .| +..+...++.+ ....| +..+|..+|+++... .|+...-..++.++.+.|++++|.+.++.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~------~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT------FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT------SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh------CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 44 34555556555 33334 888899999988765 34322222333478888999999999887
Q ss_pred HHhC-----CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 036303 499 MRSD-----NL---RPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD 542 (605)
Q Consensus 499 ~~~~-----~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 542 (605)
+.+. +. .|+ +.++..++......|+ +|.++++++.+ ..|+
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~ 285 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHE 285 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCC
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCC
Confidence 6652 11 244 4466566666666776 78888888887 4564
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.22 E-value=4.2e-08 Score=96.62 Aligned_cols=45 Identities=16% Similarity=-0.026 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036303 313 AEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEK 358 (605)
Q Consensus 313 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 358 (605)
+..+|+++.... +.+...|...+..+.+.|+.+.|..+++++...
T Consensus 198 v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 198 MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 444555555432 334555555555555666666666666666655
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.5e-11 Score=97.40 Aligned_cols=144 Identities=7% Similarity=-0.001 Sum_probs=106.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALC 484 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 484 (605)
|...+...|++++|+..++...... +.+...+..++..|.+.|++++|++.|+++++.. +.+..+|..++.++.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-----ERDPKAHRFLGLLYE 76 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHH
Confidence 3445556677888888888776542 2234456677888888888888888888888764 456778888888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCc-cHHHHHHHHHHHHhcCC
Q 036303 485 YDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMML-LADMIKMGIVP-DAVINQVMVRGYQENGD 558 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 558 (605)
..|++++|+..|+++++ +.|+ ...+..+..+|...|++++|... ++++++ +.| ++.+|......+...|+
T Consensus 77 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HcCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 88999999999988887 5565 55788888888888888776654 578877 456 57788888888877775
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.2e-09 Score=94.49 Aligned_cols=222 Identities=10% Similarity=0.036 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH----Hhc---CC
Q 036303 344 DMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG--NIDAAMGLYTEMVIKSLVPDVVVFTALIDGL----SKD---GN 414 (605)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~ 414 (605)
..++|+.+++.++..++ .+...|+.-..++...| ++++++..+..++..... +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 34577777777777642 24556666666666666 788888888877766422 444444433333 344 67
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC----
Q 036303 415 MKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRIS--NALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ---- 488 (605)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 488 (605)
+++++.+++++++.+ +.+..+|..-..++.+.|.++ ++++++++++... +.|..+|+....++...+.
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-----~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-----LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhccccchh
Confidence 889999999998876 668888888888888888888 8999999988875 6678888877777777776
Q ss_pred --HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC-CCc-cHHHHHHHHHHHHhcCChhHH
Q 036303 489 --ILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLD-VMMLLADMIKMG-IVP-DAVINQVMVRGYQENGDLKSA 562 (605)
Q Consensus 489 --~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A 562 (605)
++++++.+++++. ..| |...|..+...+.+.|+..+ +..+..++.+.+ ..| ++..+..++++|.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 8899999999887 445 45578888888878777444 555666655432 123 678889999999999999999
Q ss_pred HHHHHHHHh-cCCC
Q 036303 563 FRCSEFLKE-SRIG 575 (605)
Q Consensus 563 ~~~~~~~~~-~~~~ 575 (605)
.++++.+.+ .+|-
T Consensus 278 ~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 278 RTVYDLLKSKYNPI 291 (306)
T ss_dssp HHHHHHHHHTTCGG
T ss_pred HHHHHHHHhccChH
Confidence 999999986 5764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-10 Score=105.02 Aligned_cols=229 Identities=12% Similarity=0.040 Sum_probs=137.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 307 VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCK-EGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMG 385 (605)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 385 (605)
.|++++|..++++..+.... .+.. .++++.|...|.++ +..|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 45667777777766553211 0222 46666666666554 445677788888888
Q ss_pred HHHHHHHCCC---CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCCHHHHHH
Q 036303 386 LYTEMVIKSL---VP--DVVVFTALIDGLSKDGNMKETLRLYKEMLEAK--I-TPS--VFTVSSLIHGLFKNGRISNALN 455 (605)
Q Consensus 386 ~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~~~~~~~g~~~~A~~ 455 (605)
.|.+...... .+ -..++..+...|...|++++|+..|++.++.. . .+. ..++..++.+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8877664310 01 13366677777778888888888887776531 0 111 3456677777777 88888888
Q ss_pred HHHHhhhccCCCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 036303 456 FFLEKTDKTDGGYCSP-NHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRPD-NCTYTTMLRGLLRAKRMLDVMM 529 (605)
Q Consensus 456 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 529 (605)
.|++++......+... ...++..+..++...|++++|+..|+++.+. +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888877643221111 1345667777778888888888888877652 11111 1245555666667788888888
Q ss_pred HHHHHHHCCCC-cc---HHHHHHHHHHHHhcCChhHHHH
Q 036303 530 LLADMIKMGIV-PD---AVINQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 530 ~~~~~~~~~~~-~~---~~~~~~l~~~~~~~g~~~~A~~ 564 (605)
.+++.+ .... ++ ......++.++ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 888776 3211 01 22344555555 4666665555
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.1e-10 Score=117.33 Aligned_cols=172 Identities=10% Similarity=-0.005 Sum_probs=88.3
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036303 375 CKAGNIDAAMGLYTEMV--------IKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFK 446 (605)
Q Consensus 375 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (605)
...|++++|++.++++. ... +.+...+..+...+...|++++|...++++++.+ +.+...+..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44555555555555555 221 2233445555555555555666665555555543 3345555555555555
Q ss_pred cCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 036303 447 NGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRML 525 (605)
Q Consensus 447 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 525 (605)
.|++++|+..|+++++.. +.+...|..+..++...|++++ ++.|+++++ ..|+ ...|..+..++...|+++
T Consensus 480 ~g~~~~A~~~~~~al~l~-----P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-----PGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-----TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHH
Confidence 566666666665555542 2234445555555555555555 555555555 3332 335555555555566666
Q ss_pred HHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCC
Q 036303 526 DVMMLLADMIKMGIVPD-AVINQVMVRGYQENGD 558 (605)
Q Consensus 526 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 558 (605)
+|+..++++++ +.|+ ..++..++.++...|+
T Consensus 552 ~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 552 GAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 66655555544 3342 4455555555544443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-08 Score=96.97 Aligned_cols=378 Identities=10% Similarity=0.030 Sum_probs=216.3
Q ss_pred hcC-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHH
Q 036303 96 KKG-KFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENK-MVEA 173 (605)
Q Consensus 96 ~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 173 (605)
+.| +++.|..+|+++... -|. |+++.+..+|++.+.. .|++..|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 478888888888765 222 8899999999988875 4688888888877776653 3456
Q ss_pred HHHHHHHHHC-CCCC-CcccHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 036303 174 ESMFRSMREC-GVVP-NLYTYNALMDGYCK----VADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFF 247 (605)
Q Consensus 174 ~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 247 (605)
..+|+..+.. |..| +...|...+..+.. .++.+.+..+|++.+.. ++. ....+-..|.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~------------ 131 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFE------------ 131 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHH------------
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHH------------
Confidence 6677766553 4322 44556666655432 34566677777777652 211 1112211111
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 036303 248 VHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILA 327 (605)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 327 (605)
..... .+..+...++.-. .+.+..|..+++.+... + . ..
T Consensus 132 -~fE~~---~~~~~~~~~~~~~--~~~y~~ar~~y~~~~~~----------------------------~----~---~~ 170 (493)
T 2uy1_A 132 -NFELE---LNKITGKKIVGDT--LPIFQSSFQRYQQIQPL----------------------------I----R---GW 170 (493)
T ss_dssp -HHHHH---HCHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----------------------------H----H---TC
T ss_pred -HHHHH---hccccHHHHHHHH--hHHHHHHHHHHHHHHHH----------------------------H----h---hc
Confidence 11100 0011111111111 11223333333332210 0 0 00
Q ss_pred CHHHHHHHHHHHHhc--C-----CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 036303 328 NVVTYNSLIDGYCKE--G-----DMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVV 400 (605)
Q Consensus 328 ~~~~~~~l~~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 400 (605)
+...|...+..-... + ..+.+..+|++++... +.+...|...+..+...|+.+.|..+|++.+.. +.+..
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~ 247 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMF 247 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHH
Confidence 122333332221111 0 1345677888888763 456888888888889999999999999999987 33433
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAK---------I---TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGY 468 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 468 (605)
.+.. |+.....++. ++.+.+.- . .....+|...+....+.+..+.|..+|+.+ ...
T Consensus 248 l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~---- 315 (493)
T 2uy1_A 248 LSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE---- 315 (493)
T ss_dssp HHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS----
T ss_pred HHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC----
Confidence 3322 2221111111 22222110 0 111245666667677788899999999998 321
Q ss_pred CCccHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHH
Q 036303 469 CSPNHVLYAAIIQALCYD-GQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVIN 546 (605)
Q Consensus 469 ~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 546 (605)
..+...|...+..-... ++.+.|..+|+.+.+. .|+ +..+...++-....|+.+.|..+|+++. .....|
T Consensus 316 -~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~--~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw 387 (493)
T 2uy1_A 316 -GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMW 387 (493)
T ss_dssp -CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHH
T ss_pred -CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHH
Confidence 22344444333332233 3699999999999884 243 4566667777778999999999999862 257888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 036303 547 QVMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
...+..=...|+.+.+.+++++..+
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888877888999999998988875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-09 Score=100.35 Aligned_cols=167 Identities=10% Similarity=0.006 Sum_probs=134.5
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHH
Q 036303 396 VPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVL 475 (605)
Q Consensus 396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 475 (605)
+.+...+..+...+...|++++|...|+++++.. +.+...+..++.++...|++++|+..++++.... |+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~------p~~~~ 186 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD------QDTRY 186 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG------CSHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh------cchHH
Confidence 3455667778888889999999999999998876 5678889999999999999999999999887753 44333
Q ss_pred -HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 476 -YAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 476 -~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
.......+...++.++|+..++++.+ ..|+ ...+..+..++...|++++|+..+.++++..... +...+..++.+
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 23333446677888889999999988 4554 5688899999999999999999999999743221 37889999999
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 036303 553 YQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~ 571 (605)
|...|+.++|...+++...
T Consensus 265 ~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 265 LAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHHH
Confidence 9999999999999988764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.2e-10 Score=112.71 Aligned_cols=153 Identities=14% Similarity=0.078 Sum_probs=101.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 377 AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNF 456 (605)
Q Consensus 377 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 456 (605)
.|++++|...++++.... +.+...+..+...+...|++++|...+++.++.. +.+...+..++.++...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888777653 3356677777788888888888888888888765 45677778888888888888888888
Q ss_pred HHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHH
Q 036303 457 FLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRA---KRMLDVMMLLA 532 (605)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~ 532 (605)
++++++.. +.+...+..+..++...|++++|++.++++.+ ..| +...+..+..++... |++++|.+.++
T Consensus 80 ~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 80 LQQASDAA-----PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHhcC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 88887753 44567777888888888888888888888877 344 345777777788777 88888888888
Q ss_pred HHHHCC
Q 036303 533 DMIKMG 538 (605)
Q Consensus 533 ~~~~~~ 538 (605)
++++.+
T Consensus 153 ~al~~~ 158 (568)
T 2vsy_A 153 AAVAQG 158 (568)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 887643
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.8e-10 Score=93.40 Aligned_cols=162 Identities=12% Similarity=0.070 Sum_probs=124.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH-H
Q 036303 53 SVFSTLIIAFSEMGHIEEALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDC-C 129 (605)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 129 (605)
..+..++..+.+.|++++|...|+++. .|.+..++..+..++...|++++|...|+++....+ ++..+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 357778888999999999999999883 566788999999999999999999999999877643 45444333222 2
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CcccHHHHHHHHhccCChHHH
Q 036303 130 CGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVP-NLYTYNALMDGYCKVADVNRA 208 (605)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 208 (605)
...++...|+..+++..+.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233445788888888764 3367888888999999999999999999988875443 345788888888889999999
Q ss_pred HHHHHHHHh
Q 036303 209 LEFYHEMLH 217 (605)
Q Consensus 209 ~~~~~~~~~ 217 (605)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=120.14 Aligned_cols=167 Identities=12% Similarity=0.005 Sum_probs=145.1
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHH
Q 036303 410 SKDGNMKETLRLYKEML--------EAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQ 481 (605)
Q Consensus 410 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 481 (605)
...|++++|+..+++.+ +.. +.+...+..++.++...|++++|+..|+++++.. +.+...|..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-----GWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----cchHHHHHHHHH
Confidence 77899999999999998 543 5567788999999999999999999999999874 556788999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCh
Q 036303 482 ALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDL 559 (605)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 559 (605)
++...|++++|++.|+++++ +.|+ ...+..+..++...|++++ +..++++++ +.| +...+..++.+|.+.|++
T Consensus 476 ~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCH
Confidence 99999999999999999998 5564 5588899999999999999 999999998 445 688999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCCCccchhhh
Q 036303 560 KSAFRCSEFLKESRIGSSETEGHTTRSF 587 (605)
Q Consensus 560 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (605)
++|+..++++.+.+|++..........+
T Consensus 551 ~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 551 VGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 9999999999999998766654444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.15 E-value=5e-10 Score=94.21 Aligned_cols=162 Identities=10% Similarity=0.039 Sum_probs=121.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHH
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAII 480 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 480 (605)
.+......+...|++++|...+++.++.. |.+...+..++.++...|++++|+..++++.... |++..+....
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~~ 80 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY------QDNSYKSLIA 80 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG------CCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc------CChHHHHHHH
Confidence 45556677888899999999998887654 5567788888889999999999999998887653 3443333222
Q ss_pred HH-HHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcC
Q 036303 481 QA-LCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENG 557 (605)
Q Consensus 481 ~~-~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 557 (605)
.. +...+...+|+..++++.+ ..|+ ...+..+..++...|++++|+..++++++....+ +...+..++.++...|
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 22 1222333457888998887 5564 5688888999999999999999999998744322 3668889999999999
Q ss_pred ChhHHHHHHHHHHh
Q 036303 558 DLKSAFRCSEFLKE 571 (605)
Q Consensus 558 ~~~~A~~~~~~~~~ 571 (605)
+.++|...|+++..
T Consensus 159 ~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 159 QGNAIASKYRRQLY 172 (176)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999988764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.8e-09 Score=89.12 Aligned_cols=175 Identities=14% Similarity=0.037 Sum_probs=132.7
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----CHHHHHHHH
Q 036303 347 KALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDG----NMKETLRLY 422 (605)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 422 (605)
+|...|++..+.| +...+..+...|...+++++|+..|++....+ ++..+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566677776653 56677777777777888888888888887764 55666777777776 5 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhccCCCCCC--ccHHHHHHHHHHHHc----cCCHHHH
Q 036303 423 KEMLEAKITPSVFTVSSLIHGLFK----NGRISNALNFFLEKTDKTDGGYCS--PNHVLYAAIIQALCY----DGQILKA 492 (605)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~g~~~~A 492 (605)
++..+.+ +...+..+...|.. .+++++|+.+|++..... + .++.++..+...|.. .+++++|
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-----~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS-----ESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-----TSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-----CCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 8887754 66777788888776 788999999999888752 1 126778888888887 7889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 036303 493 SKLFSDMRSDNLRPDNCTYTTMLRGLLRA-K-----RMLDVMMLLADMIKMG 538 (605)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 538 (605)
+.+|+++.+. .++...+..|...|... | ++++|...++++.+.|
T Consensus 149 ~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 149 SEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 9999999884 34555677777777653 3 8999999999998876
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.5e-10 Score=91.39 Aligned_cols=104 Identities=10% Similarity=-0.105 Sum_probs=89.2
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQ 547 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 547 (605)
+.+...+..++..+...|++++|+..|+++++ +.|+ ...|..+..+|...|++++|+..|+++++ +.| ++..|.
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~ 108 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVF 108 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHH
Confidence 33466778888899999999999999999998 5564 56888899999999999999999999998 455 588899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 548 VMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
.++.+|.+.|++++|...|+++.+..|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999988653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=5.6e-09 Score=83.23 Aligned_cols=127 Identities=12% Similarity=0.182 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHH
Q 036303 403 TALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQA 482 (605)
Q Consensus 403 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 482 (605)
..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++.... +.+...+..++..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-----CCchHHHHHHHHH
Confidence 344444555555555555555554433 2344445555555555555555555555555432 2334445555555
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 483 LCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++++
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555566666666665555421 12334555555555566666666666655554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=85.40 Aligned_cols=106 Identities=10% Similarity=-0.009 Sum_probs=92.9
Q ss_pred Ccc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHH
Q 036303 470 SPN-HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVIN 546 (605)
Q Consensus 470 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 546 (605)
.|+ ...+...+..+.+.|++++|++.|+++++ +.| +...|..+..++...|++++|+..++++++ +.| +..+|
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~ 84 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGY 84 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHH
Confidence 444 45677889999999999999999999998 455 466888999999999999999999999998 445 68899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 547 QVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
..++.+|...|++++|...|+++.+++|++...
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 999999999999999999999999999987654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-08 Score=89.21 Aligned_cols=192 Identities=7% Similarity=-0.067 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHH
Q 036303 328 NVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEP--NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDV--VVFT 403 (605)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 403 (605)
+...+..+...+...|++++|+..|+++.+..+.. ....+..++.++...|++++|+..|++++........ ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566677788999999999999999999864321 1357788899999999999999999999987322111 1444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc-----------
Q 036303 404 ALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN----------- 472 (605)
Q Consensus 404 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------- 472 (605)
.+..++...|.. .+ ..+..+...+...|++++|+..|+++++..+.+...++
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 455555442210 00 00111122223344444555555544443321110000
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 473 -HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN----CTYTTMLRGLLRAKRMLDVMMLLADMIKMG 538 (605)
Q Consensus 473 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 538 (605)
......++..+...|++++|+..|+++++ ..|+. ..+..+..++.+.|++++|.+.++.+...+
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01113456778899999999999999998 44553 467888999999999999999999888744
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-09 Score=100.68 Aligned_cols=228 Identities=11% Similarity=0.057 Sum_probs=163.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036303 271 KAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCG-VGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKAL 349 (605)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 349 (605)
..|++++|.+++++..+.. +. .+.. .++++.|...|.++ +..|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3578889999999887632 11 1222 57888888887765 45678899999999
Q ss_pred HHHHHHhhC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHhhHHHHHHHHHhcCCHHHHH
Q 036303 350 SVCSQMTEK----GVEP-NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSL---VP--DVVVFTALIDGLSKDGNMKETL 419 (605)
Q Consensus 350 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~ 419 (605)
..+.++.+. +-.+ -..++..+..+|...|++++|+..|++.+.... .+ ...++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999887654 1111 145788889999999999999999998775411 11 13567788888888 9999999
Q ss_pred HHHHHHHHCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc-HHHHHHHHHHHHccCCHHHHH
Q 036303 420 RLYKEMLEAKIT---P--SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN-HVLYAAIIQALCYDGQILKAS 493 (605)
Q Consensus 420 ~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 493 (605)
..|++.++.... + ...++..++.++...|++++|+..|++++......+..+. ...+..++.++...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999998864211 1 1457888999999999999999999999987643332222 225667777888889999999
Q ss_pred HHHHHHHhCCCCCC---H---HHHHHHHHHHHhcCCHHHHHH
Q 036303 494 KLFSDMRSDNLRPD---N---CTYTTMLRGLLRAKRMLDVMM 529 (605)
Q Consensus 494 ~~~~~~~~~~~~p~---~---~~~~~l~~~~~~~g~~~~A~~ 529 (605)
..|++.. . .|+ . .....++.++ ..|+.+.+..
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999998 3 332 1 1344455555 5677666555
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.8e-08 Score=90.49 Aligned_cols=172 Identities=11% Similarity=-0.024 Sum_probs=125.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCc-cHH
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAKITPSV-----FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSP-NHV 474 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ 474 (605)
.+...+..+...|++++|...+.+.++....... ..+..++..+...|++++|+..+++++.......... ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566777888888888888887775422111 1234456667788899999999998876433211111 145
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCc-cH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSD-NLRPD-----NCTYTTMLRGLLRAKRMLDVMMLLADMIKMG----IVP-DA 543 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~ 543 (605)
+++.++..|...|++++|+..++++.+. ...|+ ..++..++.+|...|++++|+..++++++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7889999999999999999999998731 01222 2578889999999999999999999987531 111 17
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHHHhc
Q 036303 544 VINQVMVRGYQENGDLKSA-FRCSEFLKES 572 (605)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 572 (605)
.++..++.+|.+.|++++| ...++++.+.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7889999999999999999 7788888765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-07 Score=86.46 Aligned_cols=226 Identities=10% Similarity=0.066 Sum_probs=161.1
Q ss_pred HHHHHHhcCCh-HHHHHHHHhc--CCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH---
Q 036303 58 LIIAFSEMGHI-EEALWVYRKI--EVLPAIQACNALLNGLIKKG--KFDSVWEFYEEMVLCGLVADVVTYGVLIDCC--- 129 (605)
Q Consensus 58 l~~~~~~~g~~-~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--- 129 (605)
.+.+..+.|.+ ++|+.+++++ ..|....+|+.-..++...| ++++++.+++.++..++. +..+|+.-..++
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHH
Confidence 33344444554 6899998887 36667788888888888888 899999999999887644 556666555544
Q ss_pred -Hcc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCcccHHHHHHHHhccC
Q 036303 130 -CGQ---GDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMV--EAESMFRSMRECGVVPNLYTYNALMDGYCKVA 203 (605)
Q Consensus 130 -~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 203 (605)
... +++++++.+++.+++.. +.+..+|+.-..++.+.|.++ ++++.++++.+.++. |..+|+.....+...+
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSG
T ss_pred HHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 444 78889999999988875 447788888887888888887 888888888887665 7777877766666666
Q ss_pred C------hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCC
Q 036303 204 D------VNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRA-AGNFFVHMAKFG--VFPNIFVYNCLIDGHCKAGN 274 (605)
Q Consensus 204 ~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 274 (605)
. ++++++.+++++... +-|...++.+...+.+.|.... +..+...+.+.+ -+.+...+..++..|.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 5 777888888777764 4566777777777766666333 444555554322 13455666777777777777
Q ss_pred HHHHHHHHHHHHh
Q 036303 275 LFEAMSLCSEMEK 287 (605)
Q Consensus 275 ~~~a~~~~~~~~~ 287 (605)
.++|.++++.+.+
T Consensus 274 ~~~A~~~~~~l~~ 286 (306)
T 3dra_A 274 YNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777765
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.5e-09 Score=96.87 Aligned_cols=163 Identities=9% Similarity=-0.002 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 036303 84 IQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIY-TILIH 162 (605)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 162 (605)
...+..+...+.+.|++++|...|+++....+. +...+..+..++...|++++|...++++.... |+.... .....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 344444555555555555555555555554322 44455555555555555555555555554442 222211 11222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCCHH
Q 036303 163 GLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQ-PNVVTFGVLMDGLCKVGELR 241 (605)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 241 (605)
.+...++.++|...+++.....+. +...+..+...+...|++++|++.|.++++.... .+...+..++..+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 234444455555555555544322 4445555555555555555555555555544211 01334555555555555555
Q ss_pred HHHHHHHHH
Q 036303 242 AAGNFFVHM 250 (605)
Q Consensus 242 ~a~~~~~~~ 250 (605)
.|...+++.
T Consensus 273 ~a~~~~r~a 281 (287)
T 3qou_A 273 ALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 555555443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-08 Score=89.27 Aligned_cols=129 Identities=10% Similarity=-0.031 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGL 518 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (605)
.++..+...|++++|+..|++++ .|+...+..++.++...|++++|++.++++.+.. +.+...+..+..++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ--------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 33444445555555555555442 2244455555555555555555555555555421 11233455555555
Q ss_pred HhcCCHHHHHHHHHHHHHCC--------------CCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 519 LRAKRMLDVMMLLADMIKMG--------------IVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~--------------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
...|++++|+..++++++.. ..| ...++..++.+|.+.|++++|...++++.+.+|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 55555555555555555421 111 12455555566666666666666666666555543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=88.21 Aligned_cols=104 Identities=10% Similarity=-0.050 Sum_probs=87.9
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHH
Q 036303 471 PNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQV 548 (605)
Q Consensus 471 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 548 (605)
.+...+..++..+...|++++|+..|+++.+ ..| +...|..+..+|...|++++|+..++++++ +.| ++..+..
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~ 94 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHH
Confidence 3466677888889999999999999999887 445 566888888899999999999999999987 345 6888899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 549 MVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
++.+|...|++++|...++++.+.+|+++.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 999999999999999999999999887543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-08 Score=80.05 Aligned_cols=110 Identities=14% Similarity=0.127 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHH
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYT 512 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 512 (605)
...+...+..+.+.|++++|++.|+++++.. +.+...|..++.++...|++++|+..++++++ +.|+ ...|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~ 85 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-----PENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYI 85 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHH
Confidence 3456667777888888888888888877753 45677778888888888888888888888887 4454 45777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
.+..++...|++++|++.|+++++ +.| +..++..+..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQ--VDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHHh
Confidence 888888888888888888888887 455 46666666544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-07 Score=86.04 Aligned_cols=169 Identities=11% Similarity=-0.041 Sum_probs=123.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-ccHHHHHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEAKI-TPSVF----TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCS-PNHVLYAA 478 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~ 478 (605)
.+..+...|++++|..++++..+... .|+.. .+..++..+...|++++|+..+++++.......-. ....+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788889999998888877431 12211 23346666777789999999999988743211111 11346888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcc-HHHHH
Q 036303 479 IIQALCYDGQILKASKLFSDMRS----D-NLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKM----GIVPD-AVINQ 547 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 547 (605)
++.+|...|++++|+..++++.+ . +..+. ..++..+..+|...|++++|+..++++++. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999884 1 12222 237888999999999999999999988752 22222 77899
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHhcC
Q 036303 548 VMVRGYQENGD-LKSAFRCSEFLKESR 573 (605)
Q Consensus 548 ~l~~~~~~~g~-~~~A~~~~~~~~~~~ 573 (605)
.++.+|.+.|+ +++|...++++.+..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999995 699999999998763
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-08 Score=103.00 Aligned_cols=150 Identities=11% Similarity=-0.020 Sum_probs=65.4
Q ss_pred CChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHH
Q 036303 66 GHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFD 143 (605)
Q Consensus 66 g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 143 (605)
|++++|...|+++ ..+.+..++..+...+...|++++|.+.|++..+..+ .+...+..+..++...|++++|...++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4445555555444 1233344455555555555555555555555554421 234445555555555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc---CChHHHHHHHHHHHhC
Q 036303 144 EMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKV---ADVNRALEFYHEMLHH 218 (605)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 218 (605)
+..+.. +.+...+..+..++.+.|++++|.+.|++..+..+. +...+..+...+... |++++|.+.+++.++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 554442 223444555555555555555555555555444322 334444455555555 5555555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.9e-08 Score=86.96 Aligned_cols=133 Identities=7% Similarity=-0.055 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHH
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD--NCTYTT 513 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~ 513 (605)
....+...+...|++++|.+.|...... .|+......+...+.+.+++++|+..|+...... .|. ...+..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~------~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~ 176 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA------GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVA 176 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT------TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHH
Confidence 3445666778888888888888877653 3443355566667888888999998888665521 111 235677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCc--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 514 MLRGLLRAKRMLDVMMLLADMIKMGIVP--DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 514 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
+..++...|++++|+..|++.......| ........+.++.+.|+.++|...|+++...+|+
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 7888888899999999988887533324 3557778888899999999999999999988887
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-08 Score=90.68 Aligned_cols=200 Identities=11% Similarity=-0.028 Sum_probs=130.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 363 NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
+...+..+...+...|++++|+..|.+++... +.+...+..+..++...|++++|...+++.++.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45566777777888888888888888887763 3366777788888888888888888888888765 556778888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAK 522 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (605)
++...|++++|+..|++++...+..........+..+ + ..++.... ........++......+.. + ..|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-----~---~~~~~~~~-~~~~~~~~~~~~i~~~l~~-l-~~~ 149 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-----R---IAKKKRWN-SIEERRIHQESELHSYLTR-L-IAA 149 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-----H---HHHHHHHH-HHHHTCCCCCCHHHHHHHH-H-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-----H---HHHHHHHH-HHHHHHHhhhHHHHHHHHH-H-HHH
Confidence 8888888888888888887753211111111111111 1 11122222 2222234445444444433 2 368
Q ss_pred CHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCC
Q 036303 523 RMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQEN-GDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~ 577 (605)
++++|++.++++++ ..| +......+...+.+. +.+++|.++|+++.+..+...
T Consensus 150 ~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~ 204 (281)
T 2c2l_A 150 ERERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRD 204 (281)
T ss_dssp HHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCC
T ss_pred HHHHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Confidence 88999998888776 455 455556666666666 778899999998887554433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-07 Score=85.31 Aligned_cols=222 Identities=12% Similarity=0.047 Sum_probs=147.4
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-C-CHHHHH
Q 036303 343 GDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG-NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKD-G-NMKETL 419 (605)
Q Consensus 343 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~a~ 419 (605)
+..++|++++++++..++. +..+|+.-..++...| .+++++..+..++.... -+..+|+.-...+... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3345677777777666432 4555665555566666 47777777777776642 2555666555555554 5 677888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC---
Q 036303 420 RLYKEMLEAKITPSVFTVSSLIHGLFKNGRIS--------NALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ--- 488 (605)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 488 (605)
.+++++++.+ +.+..+|..-..++.+.|.++ +++++++++++.. +.|..+|+.....+...++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-----p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-----GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcccccc
Confidence 8888887765 556777776666666666555 8888888888864 5678888888877777765
Q ss_pred ----HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC----C
Q 036303 489 ----ILKASKLFSDMRSDNLRPDN-CTYTTMLRGLLRAKRM--------------------LDVMMLLADMIKMG----I 539 (605)
Q Consensus 489 ----~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~----~ 539 (605)
++++++.+++++. ..|+. ..|..+-..+.+.|+. .+...+..++...+ .
T Consensus 220 ~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 6889999998887 55654 4676666666665543 23333333333211 1
Q ss_pred -CccHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCC
Q 036303 540 -VPDAVINQVMVRGYQENGDLKSAFRCSEFLK-ESRI 574 (605)
Q Consensus 540 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~ 574 (605)
.+.+..+..++++|...|+.++|.++++.+. +.||
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 2468888999999999999999999999987 4444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.5e-09 Score=87.14 Aligned_cols=124 Identities=7% Similarity=0.057 Sum_probs=93.2
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH-HHhcC
Q 036303 445 FKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRG-LLRAK 522 (605)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g 522 (605)
...|++++|+..+++.+... +.+...|..++.++...|++++|+..|+++.+ ..| +...+..+..+ +...|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-----PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ--LRGENAELYAALATVLYYQAS 93 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-----CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCSCHHHHHHHHHHHHHHTT
T ss_pred hhccCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcC
Confidence 34677888888888877753 45667788888888888888888888888877 334 45577777777 66788
Q ss_pred CH--HHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 523 RM--LDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 523 ~~--~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
++ ++|...++++++. .| +..++..++.+|...|++++|...++++.+.+|++.
T Consensus 94 ~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp TCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred CcchHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 87 8888888888873 34 577888888888888999999998888888888764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-07 Score=81.43 Aligned_cols=131 Identities=8% Similarity=-0.064 Sum_probs=113.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcc
Q 036303 53 SVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQ 132 (605)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (605)
..+..++..+...|++++|+..|+++. .++..++..++.++...|++++|...|++..... +.+...+..+..++...
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 346778889999999999999999985 4578899999999999999999999999999875 34778899999999999
Q ss_pred CChhHHHHHHHHHHhCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 133 GDVMKALNLFDEMIDKGIEP---------------TVVIYTILIHGLCNENKMVEAESMFRSMRECGV 185 (605)
Q Consensus 133 g~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 185 (605)
|++++|+..|++..+..... ....+..+..++.+.|++++|...|+...+..+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 99999999999999863221 126788899999999999999999999988643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=9.1e-07 Score=80.72 Aligned_cols=218 Identities=12% Similarity=0.004 Sum_probs=146.3
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--C
Q 036303 347 KALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGN----------IDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDG--N 414 (605)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 414 (605)
+|+.+++.++..++. +..+|+.--.++...+. +++++.++..++... +-+..+|+.-...+...| +
T Consensus 48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence 556666666655322 33333332222222222 567777777777654 336667766666666666 4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc-------
Q 036303 415 MKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGR-ISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD------- 486 (605)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 486 (605)
+++++.+++++++.+ +-+..+|+.-..++...|. ++++++.+.+++... +.|..+|+.....+...
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-----p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-----FSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHHHSCCC---
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHhhhccccc
Confidence 788888888888876 5677788777777777787 588888888888764 56677777666655544
Q ss_pred -------CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCcc-HHHH
Q 036303 487 -------GQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRA-----------KRMLDVMMLLADMIKMGIVPD-AVIN 546 (605)
Q Consensus 487 -------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~-~~~~ 546 (605)
+.++++++.+++++. ..|+.. .|+.+-..+.+. +.++++++.+.++++ +.|| ..++
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~~w~l 275 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPENKWCL 275 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred cccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcccchHH
Confidence 457889999999887 556544 666565555544 457899999999997 5565 4444
Q ss_pred HHHHH---HHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 547 QVMVR---GYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 547 ~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
..++. .....|..+++..+++++.+.||-.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 33332 2335788899999999999999864
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.89 E-value=6.5e-09 Score=83.69 Aligned_cols=103 Identities=12% Similarity=-0.069 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHH
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVM 549 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l 549 (605)
+...+..+...+...|++++|+..|+++.. ..| +...|..+..++...|++++|+..++++++. .| ++..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 92 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHH
Confidence 455667778888899999999999999887 445 4567888888999999999999999999874 45 68888899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 550 VRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
+.+|...|++++|...++++.+.+|+++.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999999999887554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.5e-08 Score=85.10 Aligned_cols=163 Identities=10% Similarity=-0.081 Sum_probs=99.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-ccHHHHHHHHHHHHccCCH
Q 036303 411 KDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCS-PNHVLYAAIIQALCYDGQI 489 (605)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 489 (605)
..|++++|.+.++.+.. .......++..++..+...|++++|+..+++.+......+.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664444332 212345566666777777777777777777766633222212 2345566777777778888
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcCC
Q 036303 490 LKASKLFSDMRSD----NLRP--DNCTYTTMLRGLLRAKRMLDVMMLLADMIKM----GIVP-DAVINQVMVRGYQENGD 558 (605)
Q Consensus 490 ~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~ 558 (605)
++|.+.++++.+. +-.| ....+..+...+...|++++|...+++.++. +... ...++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888887776652 1011 1235666777777788888888888777632 1111 13445777888888888
Q ss_pred hhHHHHHHHHHHhcCC
Q 036303 559 LKSAFRCSEFLKESRI 574 (605)
Q Consensus 559 ~~~A~~~~~~~~~~~~ 574 (605)
+++|...++++.+...
T Consensus 163 ~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887776643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.5e-07 Score=84.94 Aligned_cols=171 Identities=9% Similarity=-0.021 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDV-----VVFTALIDGLSKDGNMKETLRLYKEMLEAKI---TPS--VF 435 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~ 435 (605)
.+...+..+...|++++|.+.+.+.......... ..+..+...+...|++++|...+++.++... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445566777888888888888877765322111 2233455667788899999999999886421 122 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCc--cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-H
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSP--NHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRPD-N 508 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~ 508 (605)
+++.++..|...|++++|+..|++++......+..+ ...++..++.+|...|++++|+..++++.+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788899999999999999999999884211111112 2257889999999999999999999998762 11111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 036303 509 CTYTTMLRGLLRAKRMLDV-MMLLADMIK 536 (605)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 536 (605)
.+|..+..+|...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5788999999999999999 777887764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.89 E-value=5.3e-07 Score=82.75 Aligned_cols=91 Identities=13% Similarity=0.170 Sum_probs=40.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC-CcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHH
Q 036303 336 IDGYCKEGDMEKALSVCSQMTEKGV-EPNV----VTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLV-PD----VVVFTAL 405 (605)
Q Consensus 336 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 405 (605)
+..+...|++++|..++++...... .|+. ..+..+...+...|++++|+..+.++...... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3445555566666666655554311 1111 11222333444444555555555555442111 11 1134444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 036303 406 IDGLSKDGNMKETLRLYKEML 426 (605)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~~~ 426 (605)
...|...|++++|...+++++
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.85 E-value=7.8e-08 Score=79.76 Aligned_cols=129 Identities=12% Similarity=0.069 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 036303 435 FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTT 513 (605)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 513 (605)
..+..++..+...|++++|+..|++.+... +.+...+..++.++...|++++|+..++++.+ ..| +...+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~ 86 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-----PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence 346667777888889999999998888763 45677888888889999999999999999887 344 4568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHH--HHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 514 MLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVIN--QVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 514 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
+..++...|++++|...++++++. .| +...+ ...+..+.+.|++++|...+++..+.
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 888999999999999999999874 33 45555 44455588889999999999887765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-08 Score=81.67 Aligned_cols=94 Identities=18% Similarity=0.104 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTM 514 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 514 (605)
.+..++..+.+.|++++|+..|++++... +.+...|..++.++...|++++|+..|+++.+ +.|+ +..|..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~l 110 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-----FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHH
Confidence 44444444555555555555555554432 23344455555555555555555555555554 2332 3344455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 036303 515 LRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
..+|...|++++|+..|+++++
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-08 Score=84.14 Aligned_cols=106 Identities=12% Similarity=-0.027 Sum_probs=81.0
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQ 547 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 547 (605)
+.+...+..+...+...|++++|++.|+++++ +.| +...|..+..+|...|++++|+..++++++. .| +..+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 83 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWS 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 34456677777788888888888888888877 344 4557777788888888888888888888773 34 577788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 548 VMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
.++.+|...|++++|...++++.+.+|++...
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 88888888888888888888888888877664
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-08 Score=80.70 Aligned_cols=119 Identities=12% Similarity=-0.011 Sum_probs=100.2
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQ 547 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 547 (605)
+.+...+..++..+...|++++|+..|+++++ ..|+ ...+..+..++...|++++|...++++++. .| +...+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 81 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHF 81 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHH
Confidence 45677888999999999999999999999988 3454 668889999999999999999999999984 35 688999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCccchhhhhhccc
Q 036303 548 VMVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTRSFLGHLK 592 (605)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (605)
.++.+|...|++++|...++++.+.+|+........+...+....
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999866555555655555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-06 Score=79.50 Aligned_cols=176 Identities=10% Similarity=-0.028 Sum_probs=132.0
Q ss_pred HHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcc-C-C
Q 036303 60 IAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKG-KFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQ-G-D 134 (605)
Q Consensus 60 ~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 134 (605)
....+.+..++|+++++++ ..+.+..+|+.-..++...| .+++++.+++.++...+. +..+|+.-..++... + +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 3344555567899999888 36677888988888888888 599999999999988654 677888777777666 6 8
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC--
Q 036303 135 VMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMV--------EAESMFRSMRECGVVPNLYTYNALMDGYCKVAD-- 204 (605)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-- 204 (605)
+++++++++.+++.. +.+..+|+.-..++.+.|.++ ++++.++++.+..+. |..+|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 899999999999875 347778877666666666665 888888988887665 77788888777777775
Q ss_pred -----hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 036303 205 -----VNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGE 239 (605)
Q Consensus 205 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (605)
++++++.+++++... +-|...+..+-..+.+.|.
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 678888888877763 4466666665555555554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.6e-08 Score=77.31 Aligned_cols=101 Identities=14% Similarity=0.110 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcc----HHH
Q 036303 473 HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMG--IVPD----AVI 545 (605)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~ 545 (605)
..++..++..+.+.|++++|++.|+++++ +.|+ ...|..+..+|...|++++|+..++++++.. ..++ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 45677888999999999999999999988 5565 5588889999999999999999999988632 1111 357
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 546 NQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
|..++.++...|++++|+..|+++.+..|+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 888999999999999999999999987765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-08 Score=77.30 Aligned_cols=99 Identities=8% Similarity=0.003 Sum_probs=83.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
.+..++..+.+.|++++|+..++++++ ..| +...|..+..++...|++++|+..++++++ +.| +...+..++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 355677888999999999999999998 456 566888999999999999999999999998 456 68899999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 553 YQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 553 ~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
|...|++++|+..++++.+.+|+..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999998764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-07 Score=79.69 Aligned_cols=160 Identities=9% Similarity=-0.046 Sum_probs=96.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCH
Q 036303 376 KAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEA----KI-TPSVFTVSSLIHGLFKNGRI 450 (605)
Q Consensus 376 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 450 (605)
..|++++|.+.++.+... .......+..+...+...|++++|...+++.++. +. +....++..++..+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 356666666643333221 1223445666666666777777777777666541 11 12234566677777778888
Q ss_pred HHHHHHHHHhhhccCCCCCC--ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCC
Q 036303 451 SNALNFFLEKTDKTDGGYCS--PNHVLYAAIIQALCYDGQILKASKLFSDMRSDN---LRPD--NCTYTTMLRGLLRAKR 523 (605)
Q Consensus 451 ~~A~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~ 523 (605)
++|+..+++.+......+.. .....+..+...+...|++++|...+++..+.. -.+. ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 88888887776642211111 123456677778888888888888888876420 1111 2245677778888888
Q ss_pred HHHHHHHHHHHHH
Q 036303 524 MLDVMMLLADMIK 536 (605)
Q Consensus 524 ~~~A~~~~~~~~~ 536 (605)
+++|...++++++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.3e-08 Score=76.94 Aligned_cols=98 Identities=11% Similarity=0.017 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHH
Q 036303 473 HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMV 550 (605)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~ 550 (605)
...|...+..+...|++++|+..|+++++ ..| +...|..+..++...|++++|+..++++++. .| +...+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 45677788888999999999999999988 445 4668888999999999999999999999873 45 588899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCC
Q 036303 551 RGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
.++...|++++|...++++.+.+|
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKDA 103 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999983
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-07 Score=75.29 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYT 512 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 512 (605)
...+..++..+...|++++|+..|++.+... +.+...+..++.++...|++++|++.++++.+ ..| +...+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~ 88 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-----PKDAKLYSNRAACYTKLLEFQLALKDCEECIQ--LEPTFIKGYT 88 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCchHHHH
Confidence 3344444445555555555555555544432 22344444555555555555555555555544 222 233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcC
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENG 557 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 557 (605)
.+..++...|++++|...++++++. .| +...+..++.++.+.|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 5555555555555555555555442 22 2444444444444433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.1e-07 Score=80.49 Aligned_cols=197 Identities=8% Similarity=-0.034 Sum_probs=128.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 036303 341 KEGDMEKALSVCSQMTEKGVEPNVVTFSSL-------IDGQCKAGNIDAAMGLYTEMVIKSLVPD--------------- 398 (605)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 398 (605)
..++...|.+.|.++....+ -....|..+ ..++...++..+++..+...... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 46677777777777776632 245555555 34444444455555444444331 111
Q ss_pred -------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCc
Q 036303 399 -------VVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSP 471 (605)
Q Consensus 399 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 471 (605)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-----d~ 167 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-----DK 167 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-----CH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-----Cc
Confidence 1223345566778889999998888877654 433366666777888899999999998665421 12
Q ss_pred c--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHH
Q 036303 472 N--HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD--NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQ 547 (605)
Q Consensus 472 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 547 (605)
. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++.. ..|+..++.
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~ 245 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHH
Confidence 1 23567788888899999999999998875332254 33566777788889999999999999887 345544444
Q ss_pred HH
Q 036303 548 VM 549 (605)
Q Consensus 548 ~l 549 (605)
.|
T Consensus 246 aL 247 (282)
T 4f3v_A 246 AL 247 (282)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=7.8e-08 Score=75.37 Aligned_cols=104 Identities=6% Similarity=0.060 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--------
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-------- 507 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------- 507 (605)
.+..++..+.+.|++++|+..|++++... +.+...|..++.+|...|++++|++.++++++ +.|+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-----p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~ 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-----PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHH
Confidence 45556666667777777777777766643 34456666677777777777777777776665 2221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHH
Q 036303 508 NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQV 548 (605)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 548 (605)
..+|..+..++...|++++|++.+++.++ ..||+.+...
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 12455666667777777777777777765 3455554443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.5e-08 Score=79.77 Aligned_cols=97 Identities=12% Similarity=-0.000 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHH
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTY 511 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~ 511 (605)
+...+..++..+...|++++|+..|++++... +.+...|..++.++...|++++|+..|+++++ +.| ++..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~ 92 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-----HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHH
Confidence 44556666777777777777777777777653 44566777777777777888888888877776 344 34566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 512 TTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
..+..++...|++++|...++++++
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777778888888888777775
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-07 Score=86.23 Aligned_cols=195 Identities=10% Similarity=-0.004 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036303 83 AIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIH 162 (605)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 162 (605)
+...+..++..+.+.|++++|+..|++++...+ .+...|..+..++...|++++|+..+++.++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 445566666667777777777777777766532 256666777777777777777777777776653 235566667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH
Q 036303 163 GLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRA 242 (605)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (605)
++...|++++|...|++..+.++. +...+...+....+. .+... +........+.+......+.. + ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 777777777777777766654321 111111122111111 11111 111222222333333333322 2 2466666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 036303 243 AGNFFVHMAKFGVFPNIFVYNCLIDGHCKA-GNLFEAMSLCSEMEK 287 (605)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 287 (605)
|.+.++...+.. +.+......+...+.+. +.+++|.++|..+.+
T Consensus 154 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 766666665542 12222333333333333 456667777766544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.2e-08 Score=73.68 Aligned_cols=105 Identities=10% Similarity=-0.037 Sum_probs=90.0
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--cHHHHHHH
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP--DAVINQVM 549 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 549 (605)
+...+..++..+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++++.. +. +..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45567788888999999999999999998832 2356688899999999999999999999999853 23 58899999
Q ss_pred HHHHHhc-CChhHHHHHHHHHHhcCCCCCC
Q 036303 550 VRGYQEN-GDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 550 ~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
+.++... |++++|.+.++++.+..|++++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 112 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHHH 112 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCCC
Confidence 9999999 9999999999999999998653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-07 Score=74.94 Aligned_cols=117 Identities=11% Similarity=0.088 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYT 512 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 512 (605)
...+..++..+...|++++|+..+++.+... +.+...+..++.++...|++++|++.++++.+. .| +...+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 84 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-----PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHH
Confidence 3344555555556666666666666655542 234455555566666666666666666666552 23 244555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCh
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDL 559 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 559 (605)
.+..++...|++++|...++++++. .| +..++..++.++.+.|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence 5566666666666666666666552 23 455555666666555553
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.76 E-value=6.5e-08 Score=76.93 Aligned_cols=105 Identities=8% Similarity=-0.054 Sum_probs=87.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-------------NCTYTTMLRGLLRAKRMLDVMMLLADMIKM---- 537 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 537 (605)
.+...+..+...|++++|+..|+++++ +.|+ ...|..+..++...|++++|+..++++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 355666777788899999999988887 4454 228889999999999999999999999983
Q ss_pred -CCCc-cHHHH----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCc
Q 036303 538 -GIVP-DAVIN----QVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEG 581 (605)
Q Consensus 538 -~~~~-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 581 (605)
.+.| +...| ...+.++...|++++|+..|+++.+++|++.....
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 1167 47888 99999999999999999999999999999876644
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.8e-07 Score=76.28 Aligned_cols=128 Identities=8% Similarity=0.040 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHH
Q 036303 400 VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAI 479 (605)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 479 (605)
..+..+...+...|++++|...+++.++.. +.+..++..++.++...|++++|+..+++.+... +.+...+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~ 87 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-----KKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cccHHHHHHH
Confidence 345566667777888888888888877754 4567777788888888888888888888887753 4456777788
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 036303 480 IQALCYDGQILKASKLFSDMRSDNLRPD-NCTYT--TMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~--~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
+.++...|++++|.+.++++.+ ..|+ ...+. ..+..+...|++++|+..+.+..
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888888888887 3343 33443 33334667788888888877654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-07 Score=88.80 Aligned_cols=135 Identities=9% Similarity=-0.047 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC----------CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC----------SPNHVLYAAIIQALCYDGQILKASKLFSDMRSD 502 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (605)
+...+..++..+.+.|++++|+..|++++...+.... +.....|..+..++...|++++|+..++++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 3445666666677777777777777777665321000 00147788999999999999999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHH-HHHHHHHh
Q 036303 503 NLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAF-RCSEFLKE 571 (605)
Q Consensus 503 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 571 (605)
+.| +...+..+..+|...|++++|+..|+++++ +.| +..++..++.++.+.|++++|. ..|+++.+
T Consensus 225 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 456888999999999999999999999998 455 6888999999999999999994 46666654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-05 Score=73.01 Aligned_cols=195 Identities=8% Similarity=-0.023 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHHHHH
Q 036303 345 MEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG--NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGN-MKETLRL 421 (605)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~ 421 (605)
+++++.+++.+....+ -+..+|+.-..++...+ .+++++.++..+.... +-+...|+.-..++...|. +++++..
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 3455555555555432 25555555555555555 3566666666666553 2244555555555555555 4666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc-
Q 036303 422 YKEMLEAKITPSVFTVSSLIHGLFKN--------------GRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD- 486 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 486 (605)
++++++.+ +-+..+|+.....+.+. +.++++++++.+.+... +.|..+|+.+-..+...
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-----P~d~SaW~Y~r~ll~~~~ 241 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-----PNDQSAWFYHRWLLGAGS 241 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcc
Confidence 66666654 44555555555544443 34677888888877764 55667776555444443
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHH
Q 036303 487 ----------GQILKASKLFSDMRSDNLRPDNC-TYTTMLRG---LLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVR 551 (605)
Q Consensus 487 ----------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~ 551 (605)
+.++++++.++++.+ ..||.. ++..++.. .-..|..+++...+.++++ +.| ...-|..+..
T Consensus 242 ~~~~~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 242 GRCELSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRS 317 (331)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHHH
Confidence 457899999999998 677763 33222221 1135778899999999998 667 4555555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.5e-07 Score=73.21 Aligned_cols=119 Identities=10% Similarity=-0.020 Sum_probs=74.5
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 036303 48 PKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVL 125 (605)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 125 (605)
.+.++..+..++..+.+.|++++|...|+++ ..+.+..++..++.++...|++++|...++++.+..+ .+...+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 3345556677777777777777777777765 2334566666677777777777777777777766532 255666666
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036303 126 IDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNEN 168 (605)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (605)
..++...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 667777777777777777666552 223445555555554433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.9e-07 Score=71.09 Aligned_cols=94 Identities=9% Similarity=0.142 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLR 516 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (605)
+..++..+...|++++|++.+++++... +.+...+..++.++...|++++|+..++++.+.. +.+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 3334444444444444444444444331 2223334444444444444444444444444311 112334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 036303 517 GLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 517 ~~~~~g~~~~A~~~~~~~~~ 536 (605)
++...|++++|...++++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 44444444444444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=3e-07 Score=70.87 Aligned_cols=103 Identities=10% Similarity=-0.047 Sum_probs=85.2
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMV 550 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 550 (605)
....+..++..+...|++++|+..++++.+ ..| +...+..+..++...|++++|...++++++.. +.+...+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 345677788888889999999999999887 344 56678888888999999999999999988742 22588889999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 551 RGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
.++...|++++|...++++.+.+|++.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 999999999999999999999888754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.3e-08 Score=85.87 Aligned_cols=135 Identities=10% Similarity=-0.047 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc-----------HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN-----------HVLYAAIIQALCYDGQILKASKLFSDMRSD 502 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (605)
...+..++..+...|++++|+..|++++...+....... ...+..+..++...|++++|+..++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~- 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK- 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-
Confidence 334556666777777777777777777764321110011 26778888899999999999999999988
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHH-HHHHHHHhc
Q 036303 503 NLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAF-RCSEFLKES 572 (605)
Q Consensus 503 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 572 (605)
..| +...+..+..++...|++++|+..++++++ +.| +..++..++.++...|+.+++. ..++++..+
T Consensus 117 -~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 117 -IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp -HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred -hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345 456888888999999999999999999987 345 6888888999998888888877 455555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-07 Score=78.91 Aligned_cols=118 Identities=8% Similarity=0.086 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 036303 377 AGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHG-LFKNGRI--SNA 453 (605)
Q Consensus 377 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 453 (605)
.|++++|...++...... +.+...+..+...|...|++++|...|+++++.. +.+...+..++.+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344555555555544432 2244455555555555555555555555555443 3344445555555 4455555 555
Q ss_pred HHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 454 LNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+..+++++... +.+...+..++.++...|++++|...++++.+
T Consensus 101 ~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-----SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-----CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555542 23344455555555555555555555555555
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.5e-07 Score=74.03 Aligned_cols=105 Identities=10% Similarity=-0.087 Sum_probs=89.9
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD----NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAV 544 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~ 544 (605)
+.+...+..++..+...|++++|++.|+++.+ ..|+ ...+..+..++...|++++|+..++++++. .| +..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 100 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVK 100 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHH
Confidence 34567788888899999999999999999987 5676 467888888999999999999999999874 44 688
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 545 INQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.+..++.+|...|++++|...++++.+.+|++..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 8899999999999999999999999999887653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.6e-07 Score=70.46 Aligned_cols=95 Identities=13% Similarity=0.043 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 036303 435 FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTT 513 (605)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 513 (605)
..+..++..+.+.|++++|+..|++.+... +.+...|..++.++...|++++|+..++++++ +.|+ ...|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~ 77 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIR 77 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHH
Confidence 344555555666666666666666665542 33455566666666666666666666666665 3333 345556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 036303 514 MLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 514 l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+..++...|++++|+..++++++
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHH
Confidence 66666666666666666666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.66 E-value=8.7e-07 Score=69.02 Aligned_cols=113 Identities=15% Similarity=0.229 Sum_probs=73.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHH
Q 036303 399 VVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAA 478 (605)
Q Consensus 399 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (605)
...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|+..++++.... +.+...+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CccHHHHHH
Confidence 3455566666667777777777777776653 4456666677777777777777777777776643 345566667
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 036303 479 IIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLL 519 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 519 (605)
++.++...|++++|...++++.+ ..|+ ...+..+..++.
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH
Confidence 77777777777777777777766 3343 334444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=5.4e-07 Score=70.92 Aligned_cols=118 Identities=12% Similarity=0.090 Sum_probs=80.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHH
Q 036303 399 VVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAA 478 (605)
Q Consensus 399 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (605)
...+..+...+...|++++|...+++..... +.+...+..++.++...|++++|+..+++.+... +.+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~ 85 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-----PAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-----ccCHHHHHH
Confidence 4455666666777777777777777777654 4456677777777777777788877777777653 344666777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 036303 479 IIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRM 524 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 524 (605)
++.++...|++++|.+.++++.+ ..| +...+..+..++...|++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALE--LDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHhcC
Confidence 77777788888888888887776 334 444666666666666553
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.9e-08 Score=80.15 Aligned_cols=103 Identities=10% Similarity=-0.010 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-------CC---------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 473 HVLYAAIIQALCYDGQILKASKLFSDMRSD-------NL---------RPD-NCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~---------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
...+...+..+.+.|++++|+..|+++++. +- .|. ...|..+..+|...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556666777777777777777777652 00 232 3478888889999999999999999999
Q ss_pred HCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 536 KMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 536 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
+. .| +..+|..++.+|...|++++|...++++.+++|++.
T Consensus 91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 84 45 688999999999999999999999999999998866
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5.3e-07 Score=84.35 Aligned_cols=128 Identities=19% Similarity=0.098 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAKITP--------------SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDG 466 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (605)
.+..+...+...|++++|+..|++.++..... ...++..++.++.+.|++++|+..+++++...
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-- 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 44444455555555555555555555443111 14677788888888888888888888888764
Q ss_pred CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 036303 467 GYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDV-MMLLADMI 535 (605)
Q Consensus 467 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 535 (605)
+.+...|..+..++...|++++|+..|+++++ +.|+ ...+..+..++...|++++| ...+++|.
T Consensus 227 ---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 ---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888888887 4554 45777778888888888877 44566665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.3e-07 Score=71.47 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=81.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-c---HHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPDN----CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-D---AVINQ 547 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~---~~~~~ 547 (605)
+..++..+...|++++|+..|+++.+ ..|+. ..+..+..++...|++++|...++++++.. | + ..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHH
Confidence 34566778889999999999999887 33443 377788889999999999999999998743 3 3 67788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 548 VMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.++.+|...|++++|...++++.+..|++..
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 9999999999999999999999999887543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3e-07 Score=72.48 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMR 500 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (605)
.++..+...|++++|+..|++.+... +.+...+..++.++...|++++|+..++++.
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELD-----PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33334444444444444444443321 2223333344444444444444444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-06 Score=66.90 Aligned_cols=110 Identities=19% Similarity=0.168 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYT 512 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 512 (605)
...+..++..+...|++++|+..+++.+... +.+...+..++.++...|++++|...++++.+ ..| +...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~ 76 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH--hCcccHHHHH
Confidence 3445566666667777777777777766643 34556666677777777777777777777766 333 345666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
.+..++...|++++|...++++++. .| +...+..++.+
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKH--EANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHh
Confidence 7777777777777777777777753 33 45555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.8e-06 Score=82.10 Aligned_cols=171 Identities=11% Similarity=-0.026 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-ccHHH
Q 036303 402 FTALIDGLSKDGNMKETLRLYKEMLEAKIT-PSV----FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCS-PNHVL 475 (605)
Q Consensus 402 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ 475 (605)
+..++..|...|++++|...+..+.+.... ++. .+.+.+...+...|++++|+.++..........+.. .-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455666677777777777766665542101 111 122333344445667777777777665532221112 22445
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC--CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcc--HH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSD--NL--RPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKM----GIVPD--AV 544 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~ 544 (605)
+..++..+...|++++|..+++++... +. .|. ..++..++..|...|++++|..++++.+.. +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777777778888888777776542 11 122 236667777777888888888877776531 11111 34
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 545 INQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
++..++..+...|++++|...+..+.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5666777777788888887777766654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-07 Score=81.22 Aligned_cols=148 Identities=13% Similarity=-0.001 Sum_probs=88.7
Q ss_pred HHHHHhcCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----------------H
Q 036303 59 IIAFSEMGHIEEALWVYRKIE--VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADV----------------V 120 (605)
Q Consensus 59 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~ 120 (605)
+......|++++|.+.++... .......+..++..+...|++++|...|++.....+. +. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHH
Confidence 334455566666666665431 2223456677778888888888888888888875332 22 5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 036303 121 TYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYC 200 (605)
Q Consensus 121 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 200 (605)
.+..+..++...|++++|+..++..++.. +.+..++..+..++...|++++|...|++..+..+. +...+..+..++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 66677777777777777777777777663 335667777777777777777777777777665332 4455555555555
Q ss_pred ccCChHHHH
Q 036303 201 KVADVNRAL 209 (605)
Q Consensus 201 ~~~~~~~a~ 209 (605)
..++..++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 555544444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=6.1e-07 Score=71.97 Aligned_cols=90 Identities=9% Similarity=-0.061 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRG 517 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 517 (605)
.++..+...|++++|+..|++++... +.+...|..+..++...|++++|+..|+++.+ +.|+ +..+..+..+
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLD-----HYDARYFLGLGACRQSLGLYEQALQSYSYGAL--MDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHH
Confidence 33334444444444444444444332 22333444444444444444444444444443 2222 2233344444
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 036303 518 LLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~ 535 (605)
+...|++++|+..+++++
T Consensus 96 ~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 444444444444444444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.5e-07 Score=73.66 Aligned_cols=140 Identities=10% Similarity=0.011 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CH
Q 036303 435 FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCS-PNHVLYAAIIQALCYDGQILKASKLFSDMRSD----NLRP-DN 508 (605)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~ 508 (605)
.++..++..+...|++++|+..+++.+......+.. ....++..+...+...|++++|.+.++++.+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 356677778888888888888888877643211000 11246778888999999999999999998762 1111 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 509 CTYTTMLRGLLRAKRMLDVMMLLADMIKM----GIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
..+..+..++...|++++|...++++++. +..+ ...++..++.+|...|++++|...++++.+...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999998752 2122 256788899999999999999999999987643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=7.8e-07 Score=70.81 Aligned_cols=98 Identities=12% Similarity=-0.008 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHH
Q 036303 432 PSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCT 510 (605)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 510 (605)
.+...+..++..+...|++++|+..|.+.+... +.+...|..++.++...|++++|+..++++.+ ..|+ ...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~ 79 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKA 79 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-----cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHH
Confidence 345566666666677777777777777666653 34456666677777777777777777777766 3333 446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 511 YTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+..+..++...|++++|...++++++
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666777777777777777777664
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-06 Score=72.06 Aligned_cols=97 Identities=11% Similarity=0.058 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTY 511 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 511 (605)
+...+..++..+...|++++|+..|++++... +.+...|..+..++...|++++|+..++++++ +.|+ ...|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 82 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----PANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAW 82 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 45567777788888888888888888888763 44677788888888888888888888888887 4454 5578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 512 TTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
..+..++...|++++|+..++++++
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888888888888888888886
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-07 Score=87.57 Aligned_cols=101 Identities=10% Similarity=-0.088 Sum_probs=51.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
.|..+..++...|++++|+..++++++ +.| +...|..+..+|...|++++|+..|+++++ +.| +..++..+..+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 677888889999999999999999988 445 456888889999999999999999998876 445 56677777766
Q ss_pred -HHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 553 -YQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 553 -~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
....+..+++...|+++.+..|++++.
T Consensus 308 ~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 308 AEQEKALYQKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 445677788888999999988877654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-07 Score=91.38 Aligned_cols=133 Identities=13% Similarity=0.035 Sum_probs=97.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGL 518 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 518 (605)
++..+.+.|++++|++.|+++++.. +.+..+|..++.++...|++++|++.++++.+ +.|+ ...+..+..+|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-----PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASN 84 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 3445567788888888888888763 44577888888888889999999999998888 4454 55788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH--HHhcCChhHHHHHHH-----------HHHhcCCCCCCCCc
Q 036303 519 LRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG--YQENGDLKSAFRCSE-----------FLKESRIGSSETEG 581 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~~~~~~~~~~ 581 (605)
...|++++|.+.++++++. .| +..++..++.+ +.+.|++++|++.++ ++.+.+|....+..
T Consensus 85 ~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 159 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKL 159 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCC
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccccc
Confidence 8899999999999988873 34 45566666666 888899999999888 77777766555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.4e-06 Score=68.00 Aligned_cols=113 Identities=17% Similarity=0.077 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-
Q 036303 432 PSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN----HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP- 506 (605)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p- 506 (605)
.+...+..++..+...|++++|+..|++.+.. .|+ ...+..+..++...|++++|+..++++.+ ..|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~ 97 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE--KDGG 97 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTSC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCcc
Confidence 35666777777788888888888888888764 333 56677788888888888888888888877 344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHH
Q 036303 507 DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQ 554 (605)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 554 (605)
+...+..+..++...|++++|...++++++ +.| +..++..+..+..
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALRNISG 144 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHh
Confidence 455777888888888888888888888887 344 4556555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.5e-06 Score=68.38 Aligned_cols=113 Identities=10% Similarity=0.103 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc----HHH
Q 036303 400 VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN----HVL 475 (605)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~ 475 (605)
..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|+..+++++...+.. .++ ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--REDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--chhHHHHHHH
Confidence 456667777888888888888888887764 5567778888888888888888888888887753210 111 556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRG 517 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (605)
+..++.++...|++++|.+.|+++.+ ..|+......+..+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 77777888888888888888888877 45665555444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-06 Score=66.49 Aligned_cols=97 Identities=10% Similarity=0.014 Sum_probs=51.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHhHHHHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVA--DVVTYGVLI 126 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 126 (605)
++..+..++..+...|++++|...|+++ ..+.+..++..++..+...|++++|...|++..+.. +. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3444555555555566666666555554 123344555555555555555555555555555542 22 344555555
Q ss_pred HHHHcc-CChhHHHHHHHHHHhC
Q 036303 127 DCCCGQ-GDVMKALNLFDEMIDK 148 (605)
Q Consensus 127 ~~~~~~-g~~~~a~~~~~~~~~~ 148 (605)
.++... |++++|.+.++.+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555555 5555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-07 Score=72.33 Aligned_cols=90 Identities=11% Similarity=0.057 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHH
Q 036303 486 DGQILKASKLFSDMRSDNL-RPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSA 562 (605)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 562 (605)
.|++++|+..|+++++.+. .|+ ...+..+..+|...|++++|+..++++++. .| +..++..++.+|...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 4666677777777766210 132 335666666777777777777777777663 33 466667777777777777777
Q ss_pred HHHHHHHHhcCCCCC
Q 036303 563 FRCSEFLKESRIGSS 577 (605)
Q Consensus 563 ~~~~~~~~~~~~~~~ 577 (605)
...++++.+..|+++
T Consensus 81 ~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 81 VELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhCCCcH
Confidence 777777777766554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-06 Score=67.27 Aligned_cols=88 Identities=10% Similarity=0.023 Sum_probs=39.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 036303 441 IHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLL 519 (605)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 519 (605)
+..+.+.|++++|+..|++++... +.+...|..+..++...|++++|+..|+++++ +.|+ ...+..+..++.
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-----PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 334444444444444444444432 22344444444444444444444444444444 2232 224444444444
Q ss_pred hcCCHHHHHHHHHHHH
Q 036303 520 RAKRMLDVMMLLADMI 535 (605)
Q Consensus 520 ~~g~~~~A~~~~~~~~ 535 (605)
..|++++|+..+++++
T Consensus 97 ~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 97 NEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.9e-06 Score=70.87 Aligned_cols=78 Identities=18% Similarity=0.121 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-H-HHHHH
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-A-VINQV 548 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~ 548 (605)
+...|..+..+|...|++++|+..++++++ +.|+ ...|..+..++...|++++|...++++++ +.|+ . .+...
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~ 137 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLK--REETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVARE 137 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHH
Confidence 456778888889999999999999999888 4454 55888888899999999999999999887 4564 4 44444
Q ss_pred HHHHH
Q 036303 549 MVRGY 553 (605)
Q Consensus 549 l~~~~ 553 (605)
+..+.
T Consensus 138 l~~~~ 142 (162)
T 3rkv_A 138 MKIVT 142 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-05 Score=77.98 Aligned_cols=201 Identities=13% Similarity=0.045 Sum_probs=106.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CcC
Q 036303 301 IKGLCGVGQLEGAEGLLQKMYKEGILAN----------------VVTYNSLIDGYCKEGDMEKALSVCSQMTEKGV-EPN 363 (605)
Q Consensus 301 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 363 (605)
...+...|++++|++.+..+.+...... ...+..++..|...|++++|.+.+..+..... .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4456677888888888888777542211 12355666677777777777777766554310 111
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 036303 364 VV----TFSSLIDGQCKAGNIDAAMGLYTEMVIK----SLVP-DVVVFTALIDGLSKDGNMKETLRLYKEMLEA--KI-- 430 (605)
Q Consensus 364 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-- 430 (605)
.. +.+.+...+...|+++.|..++...... +..+ -..++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1222223333456666666666655432 1111 2334555666666666666666666665432 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 431 -TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN--HVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 431 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+....++..++..|...|++++|..+++++.......+.++. ...+..++..+...|++++|...|.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111334555666666666666666666666654322211222 12344445555566666666666666554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-06 Score=84.98 Aligned_cols=133 Identities=10% Similarity=-0.018 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC----------CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 036303 434 VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGY----------CSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDN 503 (605)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 503 (605)
...+..++..+.+.|++++|+..|++++...+... .+.....|..+..+|.+.|++++|+..++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG-- 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence 33455566666666666666666666665431100 001156788889999999999999999999998
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHH-HHHHHH
Q 036303 504 LRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFR-CSEFLK 570 (605)
Q Consensus 504 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 570 (605)
+.| +...|..+..+|...|++++|+..|+++++ +.| +..++..++.++.+.|++++|.+ .++++.
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 455888899999999999999999999987 456 57788899999999999988875 444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.6e-06 Score=80.58 Aligned_cols=90 Identities=13% Similarity=0.022 Sum_probs=71.4
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHH
Q 036303 471 PNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQV 548 (605)
Q Consensus 471 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 548 (605)
.+...|..+..++.+.|++++|++.++++++ +.|+ ...+..+..+|...|++++|+..++++++ +.| +..++..
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~ 346 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 3456778888888888999999999988887 4454 55788888888888999999999888887 345 5778888
Q ss_pred HHHHHHhcCChhHHHH
Q 036303 549 MVRGYQENGDLKSAFR 564 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~ 564 (605)
+..++...++.+++.+
T Consensus 347 l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888777765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.6e-06 Score=69.01 Aligned_cols=99 Identities=11% Similarity=-0.029 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC-------CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC----
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGG-------YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNL---- 504 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---- 504 (605)
.+...+..+.+.|++++|+..|++++...+.. ..+.+...|..+..++...|++++|+..++++++ +
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--YFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhcc
Confidence 34455556666777777777777766653210 0011234888999999999999999999999988 5
Q ss_pred ---CCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 505 ---RPDNC-TY----TTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 505 ---~p~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.|+.. .| .....++...|++++|+..|+++++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 78765 77 8899999999999999999999987
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.8e-06 Score=69.80 Aligned_cols=136 Identities=10% Similarity=-0.038 Sum_probs=84.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCc-cHH
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAKIT-PS----VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSP-NHV 474 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ 474 (605)
++..+...+...|++++|...+++.++.... ++ ..++..++..+...|++++|+..+++.+......+.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555566666666666666665542100 11 13556667777777777777777777665432111111 134
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSD----NLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.+..+..++...|++++|.+.++++.+. +..+. ...+..+...+...|++++|...++++++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777788888888888888877652 11111 23667777888888899999888888765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=7.3e-06 Score=82.02 Aligned_cols=160 Identities=8% Similarity=-0.122 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHH
Q 036303 414 NMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGR----------ISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQAL 483 (605)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 483 (605)
..++|+..+++++..+ +.+..+|+.-..++...|+ ++++++.+++++... +.+..+|..-..++
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-----pK~y~aW~hR~w~l 117 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-----PKSYGTWHHRCWLL 117 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 3456677777777765 4456666666666666665 777788887777764 55677777777777
Q ss_pred HccC--CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhc--
Q 036303 484 CYDG--QILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAK-RMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQEN-- 556 (605)
Q Consensus 484 ~~~g--~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-- 556 (605)
.+.| +++++++.++++.+. .| +...|..-..++.+.| .++++++.++++++ ..| +..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSC
T ss_pred HHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhcc
Confidence 7777 668888888887773 33 4557777777777777 77777777777776 334 577777776666653
Q ss_pred ------------CChhHHHHHHHHHHhcCCCCCCCCccc
Q 036303 557 ------------GDLKSAFRCSEFLKESRIGSSETEGHT 583 (605)
Q Consensus 557 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 583 (605)
+.+++|++.++++.+.+|++..+..+.
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~ 232 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 232 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 456778888888888888776654443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-05 Score=62.99 Aligned_cols=60 Identities=10% Similarity=0.001 Sum_probs=27.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPD----NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.+..++.++...|++++|+..++++.+ ..|+ ...+..+..++...|++++|...++++++
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVS--RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444445555555555554444 2222 22344444444455555555555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.7e-05 Score=77.94 Aligned_cols=187 Identities=9% Similarity=-0.056 Sum_probs=139.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036303 379 NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGN----------MKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG 448 (605)
Q Consensus 379 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (605)
..++|++.+.+++... +-+...|+.-..++...|+ +++++..++.+++.+ +.+..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3456677777777663 2244555555555555555 788888898888876 667888888888888888
Q ss_pred --CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc---
Q 036303 449 --RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDG-QILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRA--- 521 (605)
Q Consensus 449 --~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--- 521 (605)
+++++++.++++++.. +.+..+|+.-..++...| .++++++.++++++ ..| |...|.....++...
T Consensus 122 ~~~~~~el~~~~k~l~~d-----~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-----ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCC
T ss_pred cccHHHHHHHHHHHHhhc-----cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhccc
Confidence 6699999999988875 567888888888888888 88899999998887 344 455777777766653
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhH------------HHHHHHHHHhcCCCC
Q 036303 522 -----------KRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKS------------AFRCSEFLKESRIGS 576 (605)
Q Consensus 522 -----------g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~------------A~~~~~~~~~~~~~~ 576 (605)
+.++++++.+.+++. +.| +..+|..+...+.+.|+.++ |...|+++.+.+|..
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred ccccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 567999999999997 456 78899999999999998766 444566666666653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.3e-06 Score=65.80 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 036303 447 NGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRML 525 (605)
Q Consensus 447 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 525 (605)
.|++++|+..|++++..... -+.+...+..++.++...|++++|++.|+++++ ..|+ ...+..+..++...|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQ--GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK--QFPNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCC--CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHcCCHH
Confidence 57778888888887764100 033456677788888888888888888888887 3444 457777888888888888
Q ss_pred HHHHHHHHHHH
Q 036303 526 DVMMLLADMIK 536 (605)
Q Consensus 526 ~A~~~~~~~~~ 536 (605)
+|+..++++++
T Consensus 79 ~A~~~~~~al~ 89 (117)
T 3k9i_A 79 QGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888876
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.27 E-value=4.9e-06 Score=81.80 Aligned_cols=119 Identities=8% Similarity=0.011 Sum_probs=65.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 372 DGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRIS 451 (605)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 451 (605)
..+...|++++|.+.|+++++.. +.+...+..+..++...|++++|...+++.++.. +.+..++..++.++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34555666666666666666552 2245566666666666666666666666666654 345556666666666666666
Q ss_pred HHHHHHHHhhhccCCCCCCccHHHHHHHHHH--HHccCCHHHHHHHHH
Q 036303 452 NALNFFLEKTDKTDGGYCSPNHVLYAAIIQA--LCYDGQILKASKLFS 497 (605)
Q Consensus 452 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 497 (605)
+|++.|+++++.. +.+...+..+..+ +...|++++|++.++
T Consensus 92 eA~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-----PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-----TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666666542 2222333344333 555566666666665
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.5e-05 Score=77.90 Aligned_cols=128 Identities=13% Similarity=0.026 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q 036303 401 VFTALIDGLSKDGNMKETLRLYKEMLEAKITP--------------SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDG 466 (605)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (605)
.+..+...+.+.|++++|+..|++.++..... ...++..++.++.+.|++++|+..+++++...
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-- 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--
Confidence 34444455555555555555555555432111 14677888888999999999999999988864
Q ss_pred CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 036303 467 GYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAKRMLDVMM-LLADMI 535 (605)
Q Consensus 467 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~-~~~~~~ 535 (605)
+.+..+|..+..+|...|++++|+..|+++++ +.|+.. .+..+..++...++.+++.+ .+.+|.
T Consensus 348 ---p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 ---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888889999999999999999999988 566544 77778888888888877654 445454
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.7e-06 Score=79.60 Aligned_cols=70 Identities=10% Similarity=-0.048 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCc
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEG 581 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 581 (605)
.|..+..+|.+.|++++|+..++++++. .| +..++..++.+|...|++++|+..++++.+++|++.....
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~ 302 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRR 302 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 7888999999999999999999999984 45 6899999999999999999999999999999998766544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-06 Score=69.07 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=73.3
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 485 YDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRM----------LDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
+.+.+++|++.++++.+ ..| +...|..+..++...+++ ++|+..|+++++ +.| +..+|..++.+
T Consensus 14 r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence 34668889999999888 455 455777788888877654 599999999998 567 58899999999
Q ss_pred HHhcC-----------ChhHHHHHHHHHHhcCCCCC
Q 036303 553 YQENG-----------DLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 553 ~~~~g-----------~~~~A~~~~~~~~~~~~~~~ 577 (605)
|...| ++++|+..|+++.+++|++.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 99875 89999999999999999864
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-06 Score=66.01 Aligned_cols=93 Identities=8% Similarity=0.095 Sum_probs=73.7
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-------H
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-------A 543 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~ 543 (605)
+...+..++..+...|++++|++.|+++++ ..| +...+..+..++...|++++|+..++++++ +.|+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHH
Confidence 456677888889999999999999999887 445 456888888899999999999999999987 4453 6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH
Q 036303 544 VINQVMVRGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (605)
.++..++.++...|+++.|...+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 6777888888888877777655443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-05 Score=75.37 Aligned_cols=90 Identities=13% Similarity=0.026 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTY 511 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 511 (605)
+..++..++.++.+.|++++|+..+++++... +.+...+..+..+|...|++++|++.|+++.+ +.|+ ...+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~ 344 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-----PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQ 344 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 45677888888888999999999999888753 44577788888888999999999999998887 4554 4466
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 036303 512 TTMLRGLLRAKRMLDVMM 529 (605)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~ 529 (605)
..+..++...++.+++.+
T Consensus 345 ~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 345 AELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666667666666666544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=7.7e-05 Score=58.98 Aligned_cols=110 Identities=8% Similarity=-0.059 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 036303 449 RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLR----AKRM 524 (605)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 524 (605)
++++|++.|++..+.. .++. . +...|...+.+++|.++|+++.+.| ++..+..|...|.. .+++
T Consensus 10 d~~~A~~~~~~aa~~g-----~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-----EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHTT-----CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHcCC-----CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 3455555555555432 1221 1 4444444455555666666665532 44455555555555 5566
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 036303 525 LDVMMLLADMIKMGIVPDAVINQVMVRGYQE----NGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 525 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 573 (605)
++|...++++.+.| ++..+..++..|.. .+|+++|..+++++.+.+
T Consensus 78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666666543 45555666666666 666666666666666654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.2e-05 Score=76.54 Aligned_cols=135 Identities=10% Similarity=0.006 Sum_probs=99.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCC--Cc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CC-CCCCH-HHHH
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYC--SP-NHVLYAAIIQALCYDGQILKASKLFSDMRS-----DN-LRPDN-CTYT 512 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~~-~~~~ 512 (605)
.+..+|++++|+.++++.+......-. .| ...+++.++.+|...|++++|+.+++++++ .| -.|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888877764332111 22 245678888899999999999999988775 12 23443 3788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-c-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIK-----MGIV-P-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
.|...|...|++++|..+++++++ .|.. | ...+...+..++...|.+++|...+.++++..-++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~ 469 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQ 469 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998864 3422 3 256667888899999999999999999988653333
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.1e-05 Score=63.97 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=68.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhhhccCCCCCCccHHHHHHHH
Q 036303 411 KDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRI----------SNALNFFLEKTDKTDGGYCSPNHVLYAAII 480 (605)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 480 (605)
+.+.+++|...++..++.+ +.+...+..++.++...+++ ++|+..|+++++.. +.+..+|..++
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-----P~~~~A~~~LG 87 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-----PKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-----cCcHHHHHHHH
Confidence 3445667777777777665 55666777666666666553 58888888887753 34567777888
Q ss_pred HHHHcc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036303 481 QALCYD-----------GQILKASKLFSDMRSDNLRPDNCTYTTMLRG 517 (605)
Q Consensus 481 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (605)
.+|... |++++|++.|+++++ +.|+...|...+..
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 888766 478888888888888 67877666554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.2e-05 Score=61.38 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036303 491 KASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 491 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (605)
+|+..|+++.+ ..| +...+..+..++...|++++|+..++++++. .| +...+..++.+|...|++++|...+++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666777766 334 3456777777777778888888888777763 34 466777777788888888888888888
Q ss_pred HHhcCCCCC
Q 036303 569 LKESRIGSS 577 (605)
Q Consensus 569 ~~~~~~~~~ 577 (605)
+.+..|...
T Consensus 79 al~~~~~~~ 87 (115)
T 2kat_A 79 GLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHT
T ss_pred HHHhccccc
Confidence 777766543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00015 Score=57.28 Aligned_cols=111 Identities=10% Similarity=0.021 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHc----cCC
Q 036303 413 GNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCY----DGQ 488 (605)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 488 (605)
+++++|...|++..+.+ .++.. +...|...+.+++|++.|++..+. .++..+..+...|.. .++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCSSSCCC
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHcCCCCCcc
Confidence 35566777777766665 33332 555555556666677777776653 345556666666665 667
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 036303 489 ILKASKLFSDMRSDNLRPDNCTYTTMLRGLLR----AKRMLDVMMLLADMIKMG 538 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 538 (605)
+++|.++|+++.+.| ++..+..|...|.. .+++++|...++++.+.|
T Consensus 77 ~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 77 LRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777777777643 45556666667766 677777777777777655
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.01 E-value=2e-05 Score=76.76 Aligned_cols=128 Identities=11% Similarity=-0.026 Sum_probs=75.6
Q ss_pred HhhcCCchHHHHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc------
Q 036303 5 LANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI------ 78 (605)
Q Consensus 5 ~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------ 78 (605)
+..+|+|.+|..+++..+....+.-.+. ++.-..+++.|+.+|..+|++++|..+++++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~---------------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~ 383 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADT---------------NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK 383 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTT---------------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3456666666666666665332222222 2223446788999999999999999888765
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCC-C-CHHhHHHHHHHHHccCChhHHHHHHHHHHh
Q 036303 79 ---EVLP-AIQACNALLNGLIKKGKFDSVWEFYEEMVLC-----GLV-A-DVVTYGVLIDCCCGQGDVMKALNLFDEMID 147 (605)
Q Consensus 79 ---~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 147 (605)
+..| ...+++.|+..|..+|++++|..++++.... |.. | ...+...+..++...+.++.|+.++..+.+
T Consensus 384 ~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 384 LYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 2356677777777777777777777765532 221 1 112334444555555666666666665543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.92 E-value=8e-05 Score=53.74 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHH
Q 036303 472 NHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVM 549 (605)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l 549 (605)
+...+..+...+...|++++|+..++++.+ ..| +...+..+..++...|++++|...++++++. .| +...+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 345566666777777777777777777766 233 3446667777777777777777777777763 33 46666666
Q ss_pred HHHHHhcC
Q 036303 550 VRGYQENG 557 (605)
Q Consensus 550 ~~~~~~~g 557 (605)
+.++.+.|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 66665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.3e-05 Score=57.78 Aligned_cols=90 Identities=13% Similarity=0.034 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD----- 507 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----- 507 (605)
+...+..++..+...|++++|+..|++++... +.+...+..++.++...|++++|++.++++++ +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 75 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-----PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHH
Confidence 34566677777777888888888888777753 44567777778888888888888888888876 4555
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHH
Q 036303 508 --NCTYTTMLRGLLRAKRMLDVMM 529 (605)
Q Consensus 508 --~~~~~~l~~~~~~~g~~~~A~~ 529 (605)
...+..+..++...|+.+.|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHh
Confidence 3345555555555555554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.90 E-value=8.9e-05 Score=53.47 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 505 RPDNCTYTTMLRGLLRAKR---MLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
++++..+..+..++...++ .++|..+++++++ ..| +......++..+.+.|++++|+..|+++.+.+|+ .++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 4566778888888765544 6899999999987 456 5888888999999999999999999999999988 555
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.89 E-value=3.4e-05 Score=58.87 Aligned_cols=78 Identities=8% Similarity=-0.019 Sum_probs=52.9
Q ss_pred HHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 036303 452 NALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMML 530 (605)
Q Consensus 452 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 530 (605)
+|+..|++.+... +.+...+..++.++...|++++|+..++++++ ..|+ ...|..+..++...|++++|...
T Consensus 3 ~a~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 3 AITERLEAMLAQG-----TDNMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp CHHHHHHHHHTTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4566666666543 34566677777777777777777777777776 3343 44666777777777777777777
Q ss_pred HHHHHH
Q 036303 531 LADMIK 536 (605)
Q Consensus 531 ~~~~~~ 536 (605)
++++++
T Consensus 76 ~~~al~ 81 (115)
T 2kat_A 76 WESGLA 81 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.88 E-value=2.6e-05 Score=57.74 Aligned_cols=64 Identities=22% Similarity=0.176 Sum_probs=35.6
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 471 PNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 471 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.+...+..++.++...|++++|++.|+++++ ..|+ ...|..+..+|...|++++|+..++++++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555566666666666666666555 2332 33555555556566666666666655554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00011 Score=52.88 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=29.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036303 53 SVFSTLIIAFSEMGHIEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLC 113 (605)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (605)
..+..++..+...|++++|+..|++. ..+.+..++..+..++.+.|++++|...|++....
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444555555555555555555544 12233444444455555555555555555554443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.78 E-value=6.9e-08 Score=89.29 Aligned_cols=426 Identities=12% Similarity=0.088 Sum_probs=221.1
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 036303 50 FNPSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCC 129 (605)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (605)
..|.+|..|+.+..+.|++.+|++.|-+..++ ..|..++.+..+.|.+++-+..+.-..+. .-++.+=+.|+-+|
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dp---s~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP---SSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCC---CSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCCCh---HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH
Confidence 46788999999999999999999888777543 34778889999999999999888766554 23556667889999
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHH
Q 036303 130 CGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRAL 209 (605)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 209 (605)
++.++..+-.+++. .|+..-...+..-|...|.++.|.-+|..+.. |.-|..++.+.|++..|.
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHH
Confidence 99998776544322 35666667788888888888888766654432 233334444555555554
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036303 210 EFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFE 289 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 289 (605)
+.-++ ..++.||..+..+|...+.+..|...--.++-.. + -...++..|...|.+++.+.+++.-....
T Consensus 191 daArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglglE 259 (624)
T 3lvg_A 191 DGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALGLE 259 (624)
T ss_dssp TTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTTST
T ss_pred HHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 43221 2244555555555555555554443333332111 0 01123334445555555555555544321
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHHH----------
Q 036303 290 ISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKE-GILA------NVVTYNSLIDGYCKEGDMEKALSVC---------- 352 (605)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~---------- 352 (605)
......|+-|.-.|++- ++++..+.++..... +++- ....|.-++-.|..-.+++.|....
T Consensus 260 -rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h 337 (624)
T 3lvg_A 260 -RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE 337 (624)
T ss_dssp -TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCG
T ss_pred -chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccH
Confidence 23344444444444433 233333333221111 1110 0112333333344333333332211
Q ss_pred ---HHHhhCCCCcCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHC----------CCCCCHhhHHH
Q 036303 353 ---SQMTEKGVEPNVVTFSS---------------LIDGQCKAGNIDAAMGLYTEMVIK----------SLVPDVVVFTA 404 (605)
Q Consensus 353 ---~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~~ 404 (605)
.++..+ ..|...|.. |+.++...=|..++.+++++.-.. .-..+...-.+
T Consensus 338 ~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeA 415 (624)
T 3lvg_A 338 GQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNES 415 (624)
T ss_dssp GGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHH
T ss_pred HHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHH
Confidence 000000 012222222 222222222333333333321100 00112233334
Q ss_pred HHHHHHhcCCHHHHHH------------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc
Q 036303 405 LIDGLSKDGNMKETLR------------LYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN 472 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 472 (605)
+-..|....+++.-.. +-+++.+ .+-...-..-...|.+.++|++++.+..+-
T Consensus 416 ln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEk---HeL~eFRrIAA~LYkkn~rw~qsi~l~KkD------------ 480 (624)
T 3lvg_A 416 LNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEK---HELIEFRRIAAYLFKGNNRWKQSVELCKKD------------ 480 (624)
T ss_dssp HHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHT---CSSHHHHHHHHHHHHTTCHHHHHSSCSSTT------------
T ss_pred HHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhh---CchHHHHHHHHHHHHhcccHHHHHHHHHhc------------
Confidence 4445666666554322 2222222 122333333445567777888877654221
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 473 HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMML 530 (605)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 530 (605)
..|...+.....+|+.+-|.++++-.++.| +...|...+-+|...=+++-++++
T Consensus 481 -klykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 481 -SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp -CCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred -ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 122333445567788888888888887643 556777777788777777776654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00038 Score=63.75 Aligned_cols=70 Identities=11% Similarity=-0.001 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 505 RPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
+.++.++..+...+...|++++|...+++++.. .|+...|..++.++.-.|++++|...++++..++|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 445667777777777789999999999999985 4777788888999999999999999999999998865
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.69 E-value=9.8e-05 Score=54.51 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 507 DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
+...+..+..++...|++++|+..++++++. .| +..+|..++.+|...|++++|...++++.++.|....
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 4557778888888888888888888888873 34 5778888888888888888888888888887665443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00025 Score=55.57 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCc--cHHHHHHHHHHHHhcCChhHHH
Q 036303 489 ILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAK---RMLDVMMLLADMIKMGIVP--DAVINQVMVRGYQENGDLKSAF 563 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 563 (605)
...+.+.|.+..+.+. ++..+...+.+++.+.+ +.++++.+++...+.. .| ....+..++-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3456666666665443 67778888888888887 6668999999888743 24 4778888888999999999999
Q ss_pred HHHHHHHhcCCCCCCC
Q 036303 564 RCSEFLKESRIGSSET 579 (605)
Q Consensus 564 ~~~~~~~~~~~~~~~~ 579 (605)
++++++++.+|++..+
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999999999876543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00014 Score=69.55 Aligned_cols=87 Identities=7% Similarity=-0.115 Sum_probs=62.5
Q ss_pred cCCHHHHHHHHHHHHh---CCCCC---CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCcc-HHHHHHHHH
Q 036303 486 DGQILKASKLFSDMRS---DNLRP---DN-CTYTTMLRGLLRAKRMLDVMMLLADMIK-----MG-IVPD-AVINQVMVR 551 (605)
Q Consensus 486 ~g~~~~A~~~~~~~~~---~~~~p---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~~~-~~~~~~l~~ 551 (605)
.|++++|+.++++.++ .-+.| +. .+++.|+.+|...|++++|..+++++++ .| -.|+ ...++.++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4677788887777665 11223 22 3777888888888888888888888764 23 2233 667788888
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 036303 552 GYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 552 ~~~~~g~~~~A~~~~~~~~~~ 572 (605)
+|..+|++++|...++++.+.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 888888888888888888775
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00011 Score=54.02 Aligned_cols=88 Identities=11% Similarity=0.117 Sum_probs=56.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHh
Q 036303 479 IIQALCYDGQILKASKLFSDMRSDNLRP-DNC-TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQE 555 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 555 (605)
.+..+...|++++|++.++++.+ ..| +.. .+..+..++...|++++|+..++++++. .| +..++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH-------
Confidence 34456667777777777777776 334 345 6667777777777777777777777763 34 2333311
Q ss_pred cCChhHHHHHHHHHHhcCCCCCC
Q 036303 556 NGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 556 ~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
+.+.+|...++++.+.+|+++.
T Consensus 75 -~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHCCSS
T ss_pred -HHHHHHHHHHHHHhccCccccc
Confidence 4566677777777666665543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0022 Score=58.74 Aligned_cols=75 Identities=7% Similarity=-0.067 Sum_probs=59.9
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHH
Q 036303 470 SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQV 548 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 548 (605)
+.++.++..+...+...|++++|+..+++++.. .|+...|..+...+.-.|++++|.+.+++++. +.|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 556777777777777789999999999999984 57877777778888889999999999999987 5676655543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00035 Score=51.28 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=57.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCC
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAV-INQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETE 580 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 580 (605)
..+..+...|++++|+..++++++. .| +.. .+..++.+|...|++++|...++++.+.+|++....
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3556778899999999999999974 45 577 999999999999999999999999999999877654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.014 Score=51.08 Aligned_cols=105 Identities=7% Similarity=-0.035 Sum_probs=82.8
Q ss_pred ccHHHHHHHHHHH-Hc--cC------CHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 036303 471 PNHVLYAAIIQAL-CY--DG------QILKASKLFSDMRSDNLRPD---NCTYTTMLRGLLRA-----KRMLDVMMLLAD 533 (605)
Q Consensus 471 ~~~~~~~~l~~~~-~~--~g------~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~ 533 (605)
+....|..++.+- .. .| ....|..+++++++ +.|+ ...|..+...|... |+.++|.+.|++
T Consensus 152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fer 229 (301)
T 3u64_A 152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEH 229 (301)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHH
Confidence 3445566655532 32 23 35788899999998 7787 45788888888874 999999999999
Q ss_pred HHHCCCCc--cHHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCCCC
Q 036303 534 MIKMGIVP--DAVINQVMVRGYQEN-GDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 534 ~~~~~~~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
+++ +.| +..++..+++.++.. |+.++|.+.++++.+.+|...|.
T Consensus 230 AL~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 230 LTR--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHH--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred HHH--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 998 556 488999999999885 99999999999999999886444
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00048 Score=66.10 Aligned_cols=93 Identities=9% Similarity=-0.000 Sum_probs=69.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCcc-HHH
Q 036303 480 IQALCYDGQILKASKLFSDMRSD---NLRPD----NCTYTTMLRGLLRAKRMLDVMMLLADMIK-----MG-IVPD-AVI 545 (605)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~~~-~~~ 545 (605)
+.-+...|++++|+.+++++++. -+.|+ ..+++.++.+|...|++++|+.+++++++ .| -.|+ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455678899999999888762 12333 23788888889899999999999888864 23 2232 667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036303 546 NQVMVRGYQENGDLKSAFRCSEFLKES 572 (605)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 572 (605)
+..++.+|..+|++++|...++++.+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 888999999999999999999988875
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0014 Score=48.51 Aligned_cols=68 Identities=9% Similarity=0.070 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 511 YTTMLRGLLRAKRMLDVMMLLADMIKMG------IVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
...++..+...|++..|...++.+++.. -.+...++..++.+|.+.|++++|...++++.+.+|++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 3345555555555555555555554320 1123556666666666666666666666666666666543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0011 Score=63.56 Aligned_cols=60 Identities=12% Similarity=-0.123 Sum_probs=39.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhc---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036303 53 SVFSTLIIAFSEMGHIEEALWVYRKI---------EVLPA-IQACNALLNGLIKKGKFDSVWEFYEEMVL 112 (605)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 112 (605)
.+++.++.+|..+|++++|..+++++ +..|+ ..+++.|+..|..+|++++|..+|++...
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34677788888888888888877655 12222 34566677777777777777777666543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0052 Score=58.93 Aligned_cols=96 Identities=10% Similarity=-0.044 Sum_probs=72.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCCC---ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCCCH-HH
Q 036303 441 IHGLFKNGRISNALNFFLEKTDKTDGGYCS---PNHVLYAAIIQALCYDGQILKASKLFSDMRSD-----N-LRPDN-CT 510 (605)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~ 510 (605)
+..+...|++++|+.++++.+......-.+ ....+++.++.+|...|++++|+.+++++++- | ..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344567789999999999887654322112 22456788899999999999999999988751 2 23443 37
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 511 YTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
++.|...|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998864
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0026 Score=47.76 Aligned_cols=89 Identities=16% Similarity=0.161 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCc--cHHHHHHHHHHHHhcCChhHHH
Q 036303 489 ILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLD---VMMLLADMIKMGIVP--DAVINQVMVRGYQENGDLKSAF 563 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 563 (605)
...+.+.|.+....|. |+..+-..+.+++.+...... ++.+++...+.+ .| .......++-++.+.|++++|+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 4445556655554333 677777788888888776665 888888877643 24 4667778888999999999999
Q ss_pred HHHHHHHhcCCCCCCC
Q 036303 564 RCSEFLKESRIGSSET 579 (605)
Q Consensus 564 ~~~~~~~~~~~~~~~~ 579 (605)
+.++.+++..|++..+
T Consensus 95 ~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhCCCCHHH
Confidence 9999999988876543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0032 Score=45.21 Aligned_cols=64 Identities=6% Similarity=0.010 Sum_probs=31.9
Q ss_pred CCHHhHHHHHHHHHhcCC---hHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036303 50 FNPSVFSTLIIAFSEMGH---IEEALWVYRKI--EVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLC 113 (605)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (605)
.++..+..++.++...++ .++|..++++. ..+.+..+...++..+.+.|++++|+..|+++...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555555555443333 45555555544 24444455555555555555555555555555544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.013 Score=45.90 Aligned_cols=84 Identities=15% Similarity=0.042 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhccCCCCCCc--cHHHHHHHHHHHHccCCHHH
Q 036303 417 ETLRLYKEMLEAKITPSVFTVSSLIHGLFKNG---RISNALNFFLEKTDKTDGGYCSP--NHVLYAAIIQALCYDGQILK 491 (605)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 491 (605)
.+.+-|.+....+ +++..+...+..++.+.+ +.++++.++++..+.. .| +...+-.+.-++.+.|++++
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-----~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-----SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----CccchHHHHHHHHHHHHHccCHHH
Confidence 3444455444444 356666666666666666 4456666666666642 13 24444555566666677777
Q ss_pred HHHHHHHHHhCCCCCCH
Q 036303 492 ASKLFSDMRSDNLRPDN 508 (605)
Q Consensus 492 A~~~~~~~~~~~~~p~~ 508 (605)
|.+.++.+++ +.|+.
T Consensus 90 A~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 90 ALKYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHh--cCCCC
Confidence 7777776666 55644
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0027 Score=48.81 Aligned_cols=105 Identities=13% Similarity=0.001 Sum_probs=54.1
Q ss_pred ccHHHHHHHHHHHHccCCH------HHHHHHHHHHHhCCCCCCHH-HHHHHHH------HHHhcCCHHHHHHHHHHHHHC
Q 036303 471 PNHVLYAAIIQALCYDGQI------LKASKLFSDMRSDNLRPDNC-TYTTMLR------GLLRAKRMLDVMMLLADMIKM 537 (605)
Q Consensus 471 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~~ 537 (605)
.|..+|-..+...-+.|++ ++.+++|+++.. .++|+.. .|...+. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3444454444444444555 555555555554 2344321 1111111 112335666666666666543
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 538 GIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 538 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
.-.- +.+|...+..=.++|+.+.|++++.++..+.|.+.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 2111 66666666666666777777777777666665543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.018 Score=44.29 Aligned_cols=106 Identities=12% Similarity=0.062 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCHH-hHHHHHH------HHHccCChhHHHHHHHHHH
Q 036303 80 VLPAIQACNALLNGLIKKGKF------DSVWEFYEEMVLCGLVADVV-TYGVLID------CCCGQGDVMKALNLFDEMI 146 (605)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~ 146 (605)
.+.+.++|-..+..+.+.|+. ++.+++|++.... ++|+.. .|...+. .+...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345556666666666666666 6666666666654 344321 1111111 1123367777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 036303 147 DKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVP 187 (605)
Q Consensus 147 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 187 (605)
+.+-.- ...|......-.+.|++..|.+++...+..++.|
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 553222 5566666666667777777777777777766553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.02 Score=42.15 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC--CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG--YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN 508 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (605)
+..-+..++..+.+.|++..|...|+.+++..... ...+....+..+..++.+.|++++|...++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 33444555566666666666666666655543211 0123445556666666666666666666666665 44543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.065 Score=40.99 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 505 RPDNCTYTTMLRGLLRAKR---MLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
.|+..+-..+.+++.+..+ ..+++.+++...+.+..-.......++-++.+.|++++|+++.+.+++..|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 5777777788888887764 45688888888864322246777888889999999999999999999998887543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.38 Score=42.26 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc-CCh
Q 036303 135 VMKALNLFDEMIDKGIEPT---VVIYTILIHGLCNE-----NKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKV-ADV 205 (605)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~ 205 (605)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++.++.++.-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46778888888876 455 55888888888884 89999999999998865433477788888888884 889
Q ss_pred HHHHHHHHHHHhCCCC
Q 036303 206 NRALEFYHEMLHHNLQ 221 (605)
Q Consensus 206 ~~a~~~~~~~~~~~~~ 221 (605)
+.+.+.+++.+.....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999998886443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.034 Score=41.91 Aligned_cols=77 Identities=14% Similarity=0.063 Sum_probs=59.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 503 NLRPDNCTYTTMLRGLLRAKR---MLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 503 ~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
+-.|+..+-..+.+++.+..+ ..+++.+++...+.+..-....+..++-++.+.|++++|+++.+.+++..|++..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 345777777788888887765 45688888888864411247778888999999999999999999999998887644
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.42 E-value=3.7e-05 Score=71.60 Aligned_cols=265 Identities=17% Similarity=0.131 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036303 84 IQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHG 163 (605)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (605)
+..|..++.+....+...+|++.|-+ . .|+..|..++....+.|.+++-...+....+.. .++.+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 34566666666666666666554421 1 255566666666666677776666666555442 233333556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHH
Q 036303 164 LCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAA 243 (605)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 243 (605)
|++.++..+..+.+ . .|+..-...+..-|...|.++.|.-+|..+ .-|..|...+...|++..|
T Consensus 126 yAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHH
Confidence 66666654332221 1 245555556666666666666665555322 1233344444555655555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 244 GNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKE 323 (605)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 323 (605)
.+.-++ -.++.+|..+..+|...+.+.-|.-.--.+.-+ +| -...++..|...|.+++.+.+++.-...
T Consensus 190 VdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 432222 246778999999999999888776554444322 22 2234566788899999999999887743
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCC------cCHHHHHHHHHHHHhcCCHHHHHH
Q 036303 324 GILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEK-GVE------PNVVTFSSLIDGQCKAGNIDAAMG 385 (605)
Q Consensus 324 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~~ 385 (605)
. ..-...|+-|.-.|++- ++++..+.++...++ +++ -....|..++-.|.+-.+++.|..
T Consensus 259 E-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred C-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 2 45677888888888775 445555555443332 221 123456777777777777776643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.2 Score=53.03 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036303 433 SVFTVSSLIHGLFKNGRISNALNFFLEK 460 (605)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (605)
+...|..++..+.+.|+++.|.+.|..+
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3444555555555555555555555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.14 Score=41.22 Aligned_cols=102 Identities=17% Similarity=0.142 Sum_probs=60.3
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHH
Q 036303 60 IAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKAL 139 (605)
Q Consensus 60 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 139 (605)
....+.|+++.|+++.+.+ .+...|..+......+|+++-|.+.|.+... +..+.-.|...|+.+...
T Consensus 13 ~LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3345667777777776665 3456677777777777777777777765432 233344455566666655
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 140 NLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRS 179 (605)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 179 (605)
.+-+.....| -++.-..++...|+++++.++|.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555544443 133344455556777777666644
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.24 Score=52.45 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=22.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 036303 165 CNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEM 215 (605)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 215 (605)
...|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4445555555543222 13445555555555555555555555544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.80 E-value=2.3 Score=44.50 Aligned_cols=269 Identities=11% Similarity=-0.004 Sum_probs=126.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C-----CChhhHHH--HHHH
Q 036303 235 CKVGELRAAGNFFVHMAKFGVFPNIF--VYNCLIDGHCKAGNLFEAMSLCSEMEKFEI--S-----PDVFTYNI--LIKG 303 (605)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~--l~~~ 303 (605)
...|+.+++..+++.....+...+.. .-..+.-+....|...++..++.......- . +....-.. +..+
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 34556666665555544311011222 222233344455555567776666554211 0 00111112 2222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 036303 304 LCGVGQLEGAEGLLQKMYKEGILANVV----TYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGN 379 (605)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 379 (605)
+...++ +++...+..+.... +.. .-..+...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+
T Consensus 465 ~~GS~~-eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 465 AMGSAN-IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp STTCCC-HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred hcCCCC-HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 233333 34555555555432 211 11223334556677777777777666542 1122222233334446778
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 380 IDAAMGLYTEMVIKSLVPDVVVF--TALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFF 457 (605)
Q Consensus 380 ~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 457 (605)
.+.+..+.+.+.... .|....- ..+.-+|+..|+......++..+.... ..+......+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 887777777766541 2222211 223445677788766666777777632 222332333333444566666666666
Q ss_pred HHhhhccCCCCCCccHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 458 LEKTDKTDGGYCSPNHVLYAAIIQALCYDGQI-LKASKLFSDMRSDNLRPDNCTYTTMLRGL 518 (605)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (605)
....... .|....-..+.-+....|.. .+++..+..+.. .+|..+-...+.++
T Consensus 618 ~~L~~~~-----d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 618 QLLSKSH-----NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp TTGGGCS-----CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHhcC-----CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 5444421 34443333333334444443 567778888764 45554433333333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.66 Score=37.33 Aligned_cols=100 Identities=11% Similarity=0.058 Sum_probs=46.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHH
Q 036303 164 LCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAA 243 (605)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 243 (605)
..+.|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 344555555555544431 344555555555555555555555554321 23333444445555444
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 244 GNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSE 284 (605)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 284 (605)
.++-+.....| -++.....+...|+++++.++|.+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444433332 122233334445555555555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.31 Score=36.57 Aligned_cols=23 Identities=13% Similarity=-0.051 Sum_probs=10.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh
Q 036303 479 IIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+.-++.+.|++++|.+.++.+++
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444444444444444444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.30 E-value=3.4 Score=43.24 Aligned_cols=221 Identities=11% Similarity=0.014 Sum_probs=107.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-------CcCHHHHHHHHHHH
Q 036303 304 LCGVGQLEGAEGLLQKMYKEGILANVV--TYNSLIDGYCKEGDMEKALSVCSQMTEKGV-------EPNVVTFSSLIDGQ 374 (605)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 374 (605)
....|+.++++.++......+...+.. .-..+.-+....|..+++..++.......- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445677777776666544321011222 223333344555555567776666554311 01111122222333
Q ss_pred HhcCC-HHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCC
Q 036303 375 CKAGN-IDAAMGLYTEMVIKSLVPDV--VVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSL--IHGLFKNGR 449 (605)
Q Consensus 375 ~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~ 449 (605)
...|. -+++.+.+..++... .+.. ..-..+...+...|+.+....++..+.+. .+..+...+ .-++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCC
Confidence 33332 245566666665542 1111 11123334455667777777777766653 233333333 333446777
Q ss_pred HHHHHHHHHHhhhccCCCCCCccHHH--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHH
Q 036303 450 ISNALNFFLEKTDKTDGGYCSPNHVL--YAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLR--GLLRAKRML 525 (605)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~ 525 (605)
.+.+..+.+.+.... .|.... ..++.-+|+..|+.....++++.+.+. ++..+-...+. +....|+.+
T Consensus 540 ~e~~~~li~~L~~~~-----dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 540 QELADDLITKMLASD-----ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp GGGGHHHHHHHHHCS-----CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCS
T ss_pred hHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHH
Confidence 777777777665431 222221 123445667788877777788887762 23222222222 333456655
Q ss_pred HHHHHHHHHHH
Q 036303 526 DVMMLLADMIK 536 (605)
Q Consensus 526 ~A~~~~~~~~~ 536 (605)
.+.++++.+.+
T Consensus 612 ~v~rlv~~L~~ 622 (963)
T 4ady_A 612 TVPRIVQLLSK 622 (963)
T ss_dssp SHHHHTTTGGG
T ss_pred HHHHHHHHHHh
Confidence 55555554443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.76 Score=34.66 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=25.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCC
Q 036303 160 LIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHN 219 (605)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 219 (605)
-+..+...|+-++..++...+... .+|++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 334444444444444444443221 22333444444444444444444444444444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.01 E-value=2.2 Score=40.96 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc--HHH
Q 036303 403 TALIDGLSKDGNMKETLRLYKEMLEA--KITPS---VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN--HVL 475 (605)
Q Consensus 403 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~ 475 (605)
..|...+...|++.+|..++..+... +.... ...+..-+..|...+++..|..++.++.........+|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555566666666666666665421 11111 223444455566666666666666655332111111222 123
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+...+..+...+++.+|-+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44555556666677666666665543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.39 Score=37.95 Aligned_cols=133 Identities=13% Similarity=0.031 Sum_probs=71.5
Q ss_pred hhhHhhcCCchHHHHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc---
Q 036303 2 FYVLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--- 78 (605)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 78 (605)
++-+..+|.|..|+-+..-++...-...... .+.....++..++.++...|++.+|...|+++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~--------------sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELF--------------SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSS--------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccc--------------cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3457778888888877666664321111111 00011235778999999999999999999875
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHH
Q 036303 79 -E-VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVI 156 (605)
Q Consensus 79 -~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 156 (605)
. .+.+..+...+. ....... ......+...-..+..|+.+.+++++|+.+++.+... ..+..+
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt~kv 157 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRTPKI 157 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCCHHH
T ss_pred HHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcCHHH
Confidence 1 111111111110 0000000 0112234555566788888999999999998887554 234444
Q ss_pred HHHHHHH
Q 036303 157 YTILIHG 163 (605)
Q Consensus 157 ~~~l~~~ 163 (605)
-..|.+.
T Consensus 158 nm~LakL 164 (167)
T 3ffl_A 158 NMLLANL 164 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.91 E-value=1.5 Score=33.07 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=29.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGI 539 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 539 (605)
+..+..+..+|+-+.-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.++.+.|+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3334444445555555555544322 1344444444555555555555555555555555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=2 Score=40.39 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=62.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCccHHHHHHH
Q 036303 476 YAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMI-----KMGIVPDAVINQVM 549 (605)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~~l 549 (605)
...++.++...|++.+|+..++.+.. ..| +...+..++.++.+.|+..+|++.|+++. +.|+.|.+.+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44566778889999999999999887 445 55689999999999999999999998874 36999987766655
Q ss_pred HHHHHh
Q 036303 550 VRGYQE 555 (605)
Q Consensus 550 ~~~~~~ 555 (605)
-.++..
T Consensus 252 ~~il~~ 257 (388)
T 2ff4_A 252 ERILRQ 257 (388)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 555544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.48 E-value=3 Score=45.83 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=52.5
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 036303 120 VTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTV----VIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNAL 195 (605)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 195 (605)
..|..++..+-+.+.++.+.++-...++...+.+. ..|..+...+...|++++|...+..+..... -......+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34666667777777777777766665554211111 2466677777777777777777766665432 23445556
Q ss_pred HHHHhccCChHHHH
Q 036303 196 MDGYCKVADVNRAL 209 (605)
Q Consensus 196 ~~~~~~~~~~~~a~ 209 (605)
+...+..|..+.-.
T Consensus 978 V~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 978 VNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHCCHHHHH
T ss_pred HHHHHhCCChhhhh
Confidence 66666666555443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.39 E-value=0.77 Score=34.63 Aligned_cols=69 Identities=6% Similarity=-0.004 Sum_probs=45.6
Q ss_pred CccHHHHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 036303 470 SPNHVLYAAIIQALCYDGQI---LKASKLFSDMRSDNLRPD--NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD 542 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 542 (605)
.|++.+--.+.++++++.+. .+++.+++.+.+.+ |. ...+-.|.-++.+.|++++|.++.+.+++ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 45556656666777766543 46777777777633 42 33555666677788888888888887776 5564
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.6 Score=47.68 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=32.0
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 481 QALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADM 534 (605)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (605)
..+...|+++-|+++.+++.. ..|+ -.+|..|+.+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334456666666666666665 4444 346666666666666666666655544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.56 E-value=2.5 Score=32.35 Aligned_cols=68 Identities=16% Similarity=0.087 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 036303 81 LPAIQACNALLNGLIKKGKF---DSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDK 148 (605)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 148 (605)
.++..+-..+..++++..+. .+++.+++.+.+.++.........+.-++.+.|++++|+...+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 36666666666677765543 456677777776543323444555556677777777777777777776
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=92.52 E-value=3.6 Score=38.42 Aligned_cols=94 Identities=12% Similarity=-0.027 Sum_probs=61.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcc----HHHH
Q 036303 478 AIIQALCYDGQILKASKLFSDMRSD--NLRPD---NCTYTTMLRGLLRAKRMLDVMMLLADMIKM--GIVPD----AVIN 546 (605)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~ 546 (605)
.++..|...|++.+|.+++.++.+. ..... ...+..-+..|...+++.++...+..+... .+.++ ..+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5677888889999998888887762 11111 124555556777888999988888877531 22233 2333
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHHHh
Q 036303 547 QVMVRGYQ-ENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 547 ~~l~~~~~-~~g~~~~A~~~~~~~~~ 571 (605)
..-|..+. ..++|.+|...|=.+.+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 44466677 78999999886655543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.43 E-value=7.9 Score=37.09 Aligned_cols=188 Identities=15% Similarity=0.135 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHHHhhC-----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----hcC
Q 036303 343 GDMEKALSVCSQMTEK-----GVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLS----KDG 413 (605)
Q Consensus 343 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g 413 (605)
++++.|++.+-.+.+. +..........++..|...|+++...+.+.-+...... -......+++.+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 6677777766555431 23445666777888888888888887777655543212 1222233333322 222
Q ss_pred CHHHHHHHHHHHHHC-------CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc---HHHHHHHH
Q 036303 414 NMKETLRLYKEMLEA-------KITP---SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN---HVLYAAII 480 (605)
Q Consensus 414 ~~~~a~~~~~~~~~~-------~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~l~ 480 (605)
..+.... ...+.. .+-. .......|...+...|++.+|.+++.++.....+. .+. ...+..-+
T Consensus 109 ~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 109 SLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS--MEMSEKIQFILEQM 184 (445)
T ss_dssp TTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--SCHHHHHHHHHHHH
T ss_pred chhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHH
Confidence 2221111 111111 1111 11233456666677777777777777766543211 111 23344555
Q ss_pred HHHHccCCHHHHHHHHHHHHh----CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 481 QALCYDGQILKASKLFSDMRS----DNLRPDN--CTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~----~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
+.|...+++..|..+++++.. ....|+. ..+...+..+...+++.+|.+.|..+.
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666677777777777766532 1111221 134444555556667776666665554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.49 E-value=1.1 Score=35.34 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 541 PDAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
++.++-..++.+|.+.|++++|+..++.+
T Consensus 120 ~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 120 SEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 35677888999999999999999987765
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=91.13 E-value=1 Score=38.94 Aligned_cols=119 Identities=15% Similarity=0.240 Sum_probs=77.2
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHH
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC----TYTTMLRGL 518 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~ 518 (605)
...+.|++++|+......++.. +.|...-..++..++-.|+++.|.+-++.+.+ +.|+.. .|..++.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-----P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~aE 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-----PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAA 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHHH
Confidence 3567788889988888888764 56666677888888889999999999888887 556544 334444332
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCc-----cHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 519 LRAKRMLDVMMLLADMIKMGIVP-----DAVINQVMVRG--YQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
. .=++...-+-.| ...-...++.+ ....|+.++|...-+.+.+..|....
T Consensus 79 ~----------~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 Q----------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp H----------HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred H----------HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1 111112211122 12233344444 44569999999999999888776554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.03 E-value=0.89 Score=46.45 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCC-hhHHHHHHHHHHhC------CCCC-CH----
Q 036303 88 NALLNGLIKKGK-FDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGD-VMKALNLFDEMIDK------GIEP-TV---- 154 (605)
Q Consensus 88 ~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~------~~~~-~~---- 154 (605)
..++..+...++ .+.|..+|+++....+..+......++..+...++ --+|.+++.+.++. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344444445555 46788888888776332222222233333322221 22344444443321 1111 11
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 036303 155 ------VIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEM 215 (605)
Q Consensus 155 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 215 (605)
.....=...+...|+++-|+++-++....-+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11122234455678888888888777765322 4567888888888888888888777765
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.75 E-value=3.7 Score=45.10 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 036303 436 TVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPN--HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTT 513 (605)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 513 (605)
-|..++..+.+.|.++.++++...++...... .++ ...|..+..++...|++++|...+-.+.... --...+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~--~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~ 976 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETD--DEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC--CHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC--ChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHH
Confidence 35566666777777777777777766543211 111 2256777777788888888877777666532 23446666
Q ss_pred HHHHHHhcCCH------------HHHHHHHHHHHHCC--CCccHHHHHHHHHHHHhcCChhHHHH-HHHHHHhcC
Q 036303 514 MLRGLLRAKRM------------LDVMMLLADMIKMG--IVPDAVINQVMVRGYQENGDLKSAFR-CSEFLKESR 573 (605)
Q Consensus 514 l~~~~~~~g~~------------~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~ 573 (605)
|+..++..|.. ++..+++..-.+.. +...+..|..|-.-+...||+..|.. .|+++.+++
T Consensus 977 LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~ 1051 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYI 1051 (1139)
T ss_dssp HHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhh
Confidence 66666554443 33333333222111 11123344544444556677776665 677766653
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=90.67 E-value=11 Score=35.21 Aligned_cols=166 Identities=13% Similarity=0.006 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC---hhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH--
Q 036303 260 FVYNCLIDGHCKAGNLFEAMSLCSEMEKF-EISPD---VFTYNILIKGLCGV-GQLEGAEGLLQKMYKEGILANVVTY-- 332 (605)
Q Consensus 260 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~-- 332 (605)
.....+...|.+.|+.++..+++...... +..+- ......++..+... +..+.-.++..+..+..- .+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 35566888888899988888888776431 00111 12234555555443 223333333333322100 011112
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHhhC--CCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhh
Q 036303 333 ----NSLIDGYCKEGDMEKALSVCSQMTEK--GVEPN---VVTFSSLIDGQCKAGNIDAAMGLYTEMVIK--SLVPDVVV 401 (605)
Q Consensus 333 ----~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 401 (605)
..++..|...|++.+|.+++.++.+. ..... ...+..-+..|...+++..+...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 24566666777777776666666543 11111 123344455566666666666666655432 11122222
Q ss_pred HHH--H--HHHHH-hcCCHHHHHHHHHHHH
Q 036303 402 FTA--L--IDGLS-KDGNMKETLRLYKEML 426 (605)
Q Consensus 402 ~~~--l--~~~~~-~~g~~~~a~~~~~~~~ 426 (605)
... . +..+. ..+++..|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 211 1 12234 5666666666555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.11 E-value=2.2 Score=40.16 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS-----DNLRPDNCTY 511 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 511 (605)
...++..+...|++++++..+...+... +.+...+..++.++.+.|+..+|++.|+++.+ .|+.|.+.+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-----P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-----PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445666778888888888888887764 56777888889999999999999998888754 4888887753
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.76 E-value=2.7 Score=29.74 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHH
Q 036303 488 QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVM 549 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 549 (605)
+.=+..+-++.+....+.|++.+....+.+|.+.+++..|.++++-.... ..+...+|..+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~ 85 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYV 85 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHH
Confidence 45566666666666667777777777777777777777777777765532 22234445544
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.15 E-value=11 Score=31.04 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=55.1
Q ss_pred CccHHHHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHH
Q 036303 470 SPNHVLYAAIIQALCY--DGQILKASKLFSDMRSDNLRPDN-CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAV 544 (605)
Q Consensus 470 ~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 544 (605)
..|+......+..--. .+...++..+|..|...|+.-.. ..|...+..+...|++++|.++++..++.+-.|-..
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 5555544444433222 44577999999999988776654 478888888889999999999999999888888443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.80 E-value=17 Score=32.55 Aligned_cols=113 Identities=13% Similarity=0.048 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCCCHHhHHHHHHHH
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEF----YEEMVLCGLVADVVTYGVLIDCC 129 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~l~~~~ 129 (605)
.|..+..-|.+++++++|++++..- ...+.+.|+...|.++ .+.+.+.+.+++......++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3555666677777777777764422 2233344444444332 34444445566666666666555
Q ss_pred HccCChh-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 130 CGQGDVM-KALNLFDEMI----DKG--IEPTVVIYTILIHGLCNENKMVEAESMFR 178 (605)
Q Consensus 130 ~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 178 (605)
.....-+ .=.++++.++ +.| ..-++..+..+...|.+.|++.+|...|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4432111 1122333332 121 12356677777777777777777776653
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.83 E-value=9.6 Score=31.30 Aligned_cols=57 Identities=11% Similarity=-0.006 Sum_probs=48.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 521 AKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 521 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
.+...++..+|.-|...|+-- -+..|...+..+...|++.+|..+|+..++.+-.+.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 444779999999999877655 488899999999999999999999999999765443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.44 E-value=23 Score=31.97 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=68.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHH----HHHHHCCCCCCHHhHHHHHHHH
Q 036303 54 VFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFY----EEMVLCGLVADVVTYGVLIDCC 129 (605)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~~l~~~~ 129 (605)
.|..+..-|.+++++++|++++-. -...+.+.|+...|.++- +-+.+.+++++......++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 455666678888888888887542 233444556655554443 4555566777777777777776
Q ss_pred HccCChh-HHHHHHHHHHh----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 130 CGQGDVM-KALNLFDEMID----KG--IEPTVVIYTILIHGLCNENKMVEAESMF 177 (605)
Q Consensus 130 ~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (605)
.....-+ .=..+++.+++ .| ..-|+.....+...|.+.+++.+|...|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6554321 11223333322 12 2346777788888888888888887776
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.33 E-value=9 Score=27.18 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 523 RMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
|.=+..+-+..+....+.|++.+.....++|.+.+|+.-|.++++-++.+-.+.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~ 78 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH 78 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 334556666667777788888888888888888888888888888888765444
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.28 E-value=23 Score=31.93 Aligned_cols=171 Identities=14% Similarity=0.057 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLY----KEMLEAKITPSVFTVSSLI 441 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~~~~~l~ 441 (605)
+|.++..-|.+.+++++|++++..-. ..+.+.|+...+.++. +-..+.+++++......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34555666888888888887764332 2244556655554443 4445567888988888888
Q ss_pred HHHHhcCCHH-HHHHHHHHhhhccCC--CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036303 442 HGLFKNGRIS-NALNFFLEKTDKTDG--GYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGL 518 (605)
Q Consensus 442 ~~~~~~g~~~-~A~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (605)
..+.....-+ +=.++.+++++.... ....-|+..-..+...|.+.+++.+|...| +. |-.++...+..++..+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--il--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--VL--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--TT--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--Hh--cCCchHHHHHHHHHHH
Confidence 8887776432 224444555543321 112344555567778888888888888877 22 2333335665555444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHHHHH-HHHHHHHhcCChhHHHHHHHHHHh
Q 036303 519 LRAKRMLDVMMLLADMIKMGIVPDAVINQ-VMVRGYQENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 571 (605)
...+.. .+...|. ..+--|...|+...|..+++...+
T Consensus 178 ~~~~~~----------------~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDES----------------HTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCG----------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCC----------------ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333321 1233332 233457788999999887766554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=83.19 E-value=40 Score=33.78 Aligned_cols=51 Identities=12% Similarity=-0.033 Sum_probs=31.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036303 515 LRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEF 568 (605)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (605)
+..+...|....|...|..+.+. . +..-...++......|.++.++....+
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 34455677888887777766642 2 233334556666677777777655543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.10 E-value=3.1 Score=35.99 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=36.9
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 036303 482 ALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD 542 (605)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 542 (605)
...+.|.+++|++....-++.. +-|...-..|++.++-.|+|+.|.+-++-+.+ +.|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCch
Confidence 3456677777777776666631 22444555666777777777777777776666 3454
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.38 E-value=5.8 Score=29.87 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 488 QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
|.=+..+-++.+...++.|++.+....+.+|.+.+|+..|.++++-..
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344455555555555556666666666666666666666666665544
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=80.35 E-value=7.1 Score=30.40 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=27.1
Q ss_pred HHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036303 527 VMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 527 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 573 (605)
+..+|.-|...|+-- -+..|...+..+...|++++|..+|+..++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 455555555555433 35555566666666666666666666666543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 605 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 46/349 (13%), Positives = 104/349 (29%), Gaps = 14/349 (4%)
Query: 45 LEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRK-IEVLPA-IQACNALLNGLIKKGKFDS 102
N V L + ++ + I+ P +A + L N ++G+
Sbjct: 26 WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85
Query: 103 VWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIH 162
E Y + + + V +
Sbjct: 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 145
Query: 163 GLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQP 222
+ +A + + ++ L + ++ A+ + + + L P
Sbjct: 146 KALGRLEEAKACYLKAIETQPN---FAVAWSNLGCVFNAQGEIWLAIHHFEKAV--TLDP 200
Query: 223 NVV-TFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSL 281
N + + L + L + A ++ + V+ L + + G + A+
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDT 259
Query: 282 CSEMEKFEISPD-VFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYC 340
E+ P Y L L G + AE + + + N+L +
Sbjct: 260 YRRA--IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKR 316
Query: 341 KEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTE 389
++G++E+A+ + + E E S+L + G + A+ Y E
Sbjct: 317 EQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKE 364
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.72 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.7 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.43 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.42 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.39 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.36 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.35 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.32 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.27 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.23 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.2 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.19 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.95 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.95 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.95 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.93 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.9 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.86 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.83 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.81 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.8 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.79 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.77 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.77 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.72 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.63 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.61 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.6 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.53 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.52 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.49 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.47 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.44 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.44 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.32 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.32 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.31 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.24 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.13 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.13 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.1 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.09 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.08 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.04 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.94 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.86 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.78 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.59 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.5 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.16 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.13 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.74 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.21 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.55 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.45 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.11 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.83 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.6 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.64 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 85.56 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.9e-24 Score=204.71 Aligned_cols=379 Identities=16% Similarity=0.115 Sum_probs=233.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH
Q 036303 163 GLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRA 242 (605)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (605)
.+.+.|++++|.+.++++.+..+. +..++..+..++.+.|++++|++.+++.++.. +.+..++..++.++...|++++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 334444444444444444443221 33344444444444444444444444444432 2233444444555555555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 243 AGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYK 322 (605)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 322 (605)
|...+....+.. +.+..............+....+........... .................+....+...+.....
T Consensus 86 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhc
Confidence 555555544432 1222222223333333334344433333333322 22333333444445555666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 036303 323 EGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVF 402 (605)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 402 (605)
.. +.+...+..+...+...|+++.|...++++.+.. +.+...+..+...+...|++++|...+....... +.+...+
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 43 2345566666677777777777777777776653 2356667777777777788888888777777653 3355666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHH
Q 036303 403 TALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQA 482 (605)
Q Consensus 403 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 482 (605)
..+...+...|++++|...|+++++.. +.+..++..++.++...|++++|++.++...... +.+...+..++.+
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-----PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-----CccchhhhHHHHH
Confidence 677777888888888888888887765 4567777888888888888888888888877753 5566777788888
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCC
Q 036303 483 LCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGD 558 (605)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 558 (605)
+...|++++|++.++++++ +.|+ ..++..+..++...|++++|+..++++++ +.| ++.++..++.+|.+.||
T Consensus 315 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 8888888888888888877 4554 44777788888888888888888888886 456 47788888888888775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.6e-23 Score=198.57 Aligned_cols=383 Identities=14% Similarity=0.083 Sum_probs=221.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036303 90 LLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENK 169 (605)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (605)
++..+.+.|++++|.+.|+++.+..+ .++..+..+..++.+.|++++|+..++++++.. |.+..++..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 34455666666666666666665532 245566666666666666666666666666553 2245566666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 170 MVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVH 249 (605)
Q Consensus 170 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 249 (605)
+++|...+......... +...+..........+....+........... ..........
T Consensus 83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------------- 141 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDL------------------- 141 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHH-------------------
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccc-------------------
Confidence 66666666666554322 22223333333333333333333333322221 1222222223
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 036303 250 MAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANV 329 (605)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 329 (605)
.......+....+...+....... +.+...+..+...+...|++++|...+++..... +.+.
T Consensus 142 ----------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 203 (388)
T d1w3ba_ 142 ----------------GNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFL 203 (388)
T ss_dssp ----------------HHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ----------------cccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccH
Confidence 333334444444444444443322 2233444445555555555555555555555442 2244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 036303 330 VTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGL 409 (605)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (605)
..+..+...+...|++++|...+++....+ +.+...+..+...+...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 204 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 281 (388)
T d1w3ba_ 204 DAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHH
T ss_pred HHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 555556666666666666666666665543 2345555566666666677777777776666553 23455666677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCH
Q 036303 410 SKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQI 489 (605)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 489 (605)
...|++++|...++...... +.+...+..++..+...|++++|+..|+++++.. +.+..++..++.++...|++
T Consensus 282 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~ 355 (388)
T d1w3ba_ 282 KEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-----PEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-----TTCHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCH
Confidence 77777777777777776654 5566677777777777788888888887777643 34466677777788888888
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 036303 490 LKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKR 523 (605)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 523 (605)
++|++.|+++++ +.|+ ...|..+..++.+.||
T Consensus 356 ~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 356 QEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 888888888776 5565 4477777777776664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=7.4e-16 Score=142.82 Aligned_cols=253 Identities=11% Similarity=0.048 Sum_probs=177.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC
Q 036303 299 ILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG 378 (605)
Q Consensus 299 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 378 (605)
.....+.+.|++++|+..|+++.+.. +.+..+|..+..++...|+++.|...+.++.+..+ .+...+..++.+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc
Confidence 45556777888888888888887764 33567777788888888888888888888777642 35677777777888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036303 379 NIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFL 458 (605)
Q Consensus 379 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 458 (605)
++++|.+.+..+.... |+.............. .+..........+...+.+.+|...+.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHHHH
Confidence 8888888888777652 2221110000000000 000001111122334556778888888
Q ss_pred HhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036303 459 EKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKM 537 (605)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 537 (605)
+++...+ -..+...+..++..+...|++++|+..++++.. ..|+ ...|..+..++...|++++|++.++++++
T Consensus 161 ~al~~~p---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~- 234 (323)
T d1fcha_ 161 AAVRLDP---TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE- 234 (323)
T ss_dssp HHHHHST---TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHhh---cccccccchhhHHHHHHHHHHhhhhcccccccc--cccccccchhhhhhcccccccchhHHHHHHHHHH-
Confidence 8776532 134567788888999999999999999999987 4454 56888899999999999999999999997
Q ss_pred CCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCc
Q 036303 538 GIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEG 581 (605)
Q Consensus 538 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 581 (605)
+.| +..++..++.+|.+.|++++|+..|+++.+++|++.....
T Consensus 235 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 278 (323)
T d1fcha_ 235 -LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 278 (323)
T ss_dssp -HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred -HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence 456 5888999999999999999999999999999998766543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.6e-14 Score=133.66 Aligned_cols=272 Identities=11% Similarity=0.019 Sum_probs=200.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036303 262 YNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCK 341 (605)
Q Consensus 262 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (605)
.-.....+.+.|++++|+..|+++.+.. |.+..+|..+..++...|++++|...+.++.+.. +-+...+..++..+..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence 3356778899999999999999999865 4467889999999999999999999999998875 3467888999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 036303 342 EGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRL 421 (605)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 421 (605)
.|++++|.+.++++.... |+............. ..+.......+..+...+.+.++...
T Consensus 100 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHH
Confidence 999999999999998863 222111000000000 00001111112233444567778888
Q ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036303 422 YKEMLEAKI-TPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMR 500 (605)
Q Consensus 422 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (605)
+.+.++... ..+..++..++..+...|++++|+..|++.+... +.+...|..++.++...|++++|++.|++++
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 233 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-----PNDYLLWNKLGATLANGNQSEEAVAAYRRAL 233 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-----cccccchhhhhhcccccccchhHHHHHHHHH
Confidence 888776532 3456778888888999999999999999988764 4557788889999999999999999999988
Q ss_pred hCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc------------cHHHHHHHHHHHHhcCChhHHHHH
Q 036303 501 SDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP------------DAVINQVMVRGYQENGDLKSAFRC 565 (605)
Q Consensus 501 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~ 565 (605)
+ +.|+ ...|..++.+|...|++++|+..|+++++. .| ...+|..+..++...|+.+.+...
T Consensus 234 ~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 234 E--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred H--HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7 4554 557888999999999999999999998862 22 234566677777777877766544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=1.2e-10 Score=108.83 Aligned_cols=271 Identities=11% Similarity=0.048 Sum_probs=139.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CC-cCHHHHHHHHHHH
Q 036303 304 LCGVGQLEGAEGLLQKMYKEGILAN----VVTYNSLIDGYCKEGDMEKALSVCSQMTEKG----VE-PNVVTFSSLIDGQ 374 (605)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~ 374 (605)
+...|++++|+.++++..+.....+ ...+..+...+...|++++|...++++.+.. .. .....+..+...+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3444555555555544444321111 1233344444555555555555555443320 00 0112233344455
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHH
Q 036303 375 CKAGNIDAAMGLYTEMVIK----SLVP---DVVVFTALIDGLSKDGNMKETLRLYKEMLEAK----ITPSVFTVSSLIHG 443 (605)
Q Consensus 375 ~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~ 443 (605)
...|++..+...+...... .... ....+..+...+...|+++.+...+....... .......+......
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 5556666655555544321 1111 11233344555666666666666666665432 11123334444555
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 036303 444 LFKNGRISNALNFFLEKTDKTDGGYCSPN--HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD---NCTYTTMLRGL 518 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 518 (605)
+...++..++...+.+........+..+. ...+......+...|++++|...+++........+ ...+..+..++
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 66666666666666655543322221121 22344555566677777777777777655321111 22444566677
Q ss_pred HhcCCHHHHHHHHHHHHH----CCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 519 LRAKRMLDVMMLLADMIK----MGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 519 ~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
...|++++|...+++++. .+..| ...++..++.+|.+.|++++|.+.++++.++.+
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 777777777777776652 23344 255667777777777777777777777766543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.3e-11 Score=110.51 Aligned_cols=231 Identities=10% Similarity=0.059 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 036303 330 VTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG-NIDAAMGLYTEMVIKSLVPDVVVFTALIDG 408 (605)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 408 (605)
..++.+...+.+.+.+++|+.+++++++.++ -+...|+....++...| ++++|+..++.++... +-+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 3455566666777777888888888877643 35666777777777665 4788888888777664 3356777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC
Q 036303 409 LSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ 488 (605)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 488 (605)
+...|++++|+..++++++.. +.+..+|..++.++.+.|++++|+..++++++.. +.+..+|+.+..++...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-----p~n~~a~~~r~~~l~~~~~ 195 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-----VRNNSVWNQRYFVISNTTG 195 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTC
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-----CccHHHHHHHHHHHHHccc
Confidence 888888888888888888765 5567788888888888888888888888888763 4556677776666555443
Q ss_pred ------HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhc--CC
Q 036303 489 ------ILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQEN--GD 558 (605)
Q Consensus 489 ------~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--g~ 558 (605)
+++|++.+.++++ +.|+ ...|..+...+. ....+++.+.+...++....+ +...+..++.+|... ++
T Consensus 196 ~~~~~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~ 272 (315)
T d2h6fa1 196 YNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQ 272 (315)
T ss_dssp SCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTT
T ss_pred cchhhhhHHhHHHHHHHHH--hCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcC
Confidence 5778888888877 4554 446666655543 444677777777777633333 466667777776543 45
Q ss_pred hhHHHHHHHHHHh
Q 036303 559 LKSAFRCSEFLKE 571 (605)
Q Consensus 559 ~~~A~~~~~~~~~ 571 (605)
.+.+...++++.+
T Consensus 273 ~~~~~~~~~ka~~ 285 (315)
T d2h6fa1 273 CDNKEDILNKALE 285 (315)
T ss_dssp CSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=3.6e-10 Score=105.46 Aligned_cols=299 Identities=13% Similarity=0.026 Sum_probs=187.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHH
Q 036303 265 LIDGHCKAGNLFEAMSLCSEMEKFEISPD----VFTYNILIKGLCGVGQLEGAEGLLQKMYKEGI-LAN----VVTYNSL 335 (605)
Q Consensus 265 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l 335 (605)
....+...|++++|+..+++........+ ...+..+..++...|++++|...+++...... .++ ...+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34455666667777766666655321111 12445555666667777777777766554210 011 2234455
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC----CCC--c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHhhHHH
Q 036303 336 IDGYCKEGDMEKALSVCSQMTEK----GVE--P-NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLV----PDVVVFTA 404 (605)
Q Consensus 336 ~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 404 (605)
...+...|++..+...+...... +.. + ....+..+...+...|+++.+...+......... .....+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 56667777777777777665432 111 1 1234455667777888888888888777654221 22334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHH
Q 036303 405 LIDGLSKDGNMKETLRLYKEMLEA--KITPS----VFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAA 478 (605)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (605)
....+...+++..+...+.+.... ..... ...+..++..+...|++++|...+.+........ .......+..
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~ 256 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN-NHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT-CGGGHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc-chHHHHHHHH
Confidence 556677788888888877766542 11111 2245556677888999999999999887654321 1233455667
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc----cHHH
Q 036303 479 IIQALCYDGQILKASKLFSDMRS----DNLRPDN-CTYTTMLRGLLRAKRMLDVMMLLADMIKM----GIVP----DAVI 545 (605)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~----~~~~ 545 (605)
+..++...|++++|...++++.. .+..|+. ..+..+..+|...|++++|.+.++++++. |... ....
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~ 336 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 336 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence 88889999999999999998764 2444443 37778888999999999999999988652 2221 1234
Q ss_pred HHHHHHHHHhcCChhHHHH
Q 036303 546 NQVMVRGYQENGDLKSAFR 564 (605)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~ 564 (605)
+..+...+...|+.+++.+
T Consensus 337 ~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 337 MAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhcCCChHHHH
Confidence 4456666777788777765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=4.2e-11 Score=108.79 Aligned_cols=204 Identities=10% Similarity=0.012 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036303 364 VVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDG-NMKETLRLYKEMLEAKITPSVFTVSSLIH 442 (605)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (605)
...++.+...+.+.+.+++|+.++++++... +-+...|+....++...| ++++|+..+++.++.. +.+..++..++.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 4566677778888999999999999999884 336677888888888776 5999999999999876 668899999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 036303 443 GLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRA 521 (605)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 521 (605)
++.+.|++++|+..+.+++... +.+..+|..++.++...|++++|++.++++++ +.|+ ...|..+..++.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-----p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~ 193 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-----AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNT 193 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHhhccHHHHHHHHhhhhhhh-----hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHc
Confidence 9999999999999999999874 56789999999999999999999999999998 5564 55788777777665
Q ss_pred CC------HHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 522 KR------MLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 522 g~------~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
+. +++|+..+.++++ +.| +...|..++..+...| .+++...++++.+..|.....
T Consensus 194 ~~~~~~~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~ 255 (315)
T d2h6fa1 194 TGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSP 255 (315)
T ss_dssp TCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCH
T ss_pred cccchhhhhHHhHHHHHHHHH--hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCH
Confidence 55 6789999999987 445 6888888887766554 689999999999999876543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=3.5e-11 Score=106.70 Aligned_cols=222 Identities=14% Similarity=0.017 Sum_probs=141.2
Q ss_pred HHHHHHHHHHhhCCC-Cc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036303 346 EKALSVCSQMTEKGV-EP--NVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLY 422 (605)
Q Consensus 346 ~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 422 (605)
+.++..++++..... .+ ...++..+..+|...|++++|+..|++.+... +.++.++..+..++...|++++|+..|
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 444444555554311 11 23456667778888888888888888887763 346677888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 036303 423 KEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSD 502 (605)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (605)
+++++.+ +.+..++..++.++...|++++|+..|++.++.. +.+......+..++...+..+.+..+......
T Consensus 95 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (259)
T d1xnfa_ 95 DSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 167 (259)
T ss_dssp HHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred hHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-----cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc-
Confidence 8888765 4456678888888888888888888888887763 33444444444445555555555555555554
Q ss_pred CCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036303 503 NLRPDNCTYTTMLRGLLRA----KRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSS 577 (605)
Q Consensus 503 ~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 577 (605)
..++...+. ++..+... +..+.+...+..... ..| ...++..++.+|...|++++|.+.|+++.+.+|.+.
T Consensus 168 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 168 -SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp -SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred -cchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 222222222 22222211 112222222222221 223 256778899999999999999999999999998765
Q ss_pred CC
Q 036303 578 ET 579 (605)
Q Consensus 578 ~~ 579 (605)
..
T Consensus 244 ~~ 245 (259)
T d1xnfa_ 244 VE 245 (259)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=4.6e-10 Score=101.87 Aligned_cols=196 Identities=13% Similarity=0.091 Sum_probs=154.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036303 378 GNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFF 457 (605)
Q Consensus 378 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 457 (605)
+..++|..+|++.+....+.+...+...+..+...|+++.|..+|+++++........++..++..+.+.|+.+.|+++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578888999888765455666778888888899999999999999988653344567888889999999999999999
Q ss_pred HHhhhccCCCCCCccHHHHHHHHHH-HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 458 LEKTDKTDGGYCSPNHVLYAAIIQA-LCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+.+++.. +.+...|...+.. +...|+.+.|..+|+++++. .+.+...|..++..+...|+.+.|+.+|+++++
T Consensus 158 ~~al~~~-----~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 158 KKAREDA-----RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHTST-----TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhC-----CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9998763 3334444444433 34568999999999999983 233566899999999999999999999999987
Q ss_pred CC-CCcc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 537 MG-IVPD--AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 537 ~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
.. ..|+ ..+|...+..-...|+.+.+..+++++.+.-|+....
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~ 277 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccccc
Confidence 53 3443 5688888888888999999999999999998877654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=2.1e-11 Score=112.61 Aligned_cols=221 Identities=6% Similarity=-0.092 Sum_probs=151.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHhcCCHHH
Q 036303 341 KEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAG--NIDAAMGLYTEMVIKSLVPDVVVF-TALIDGLSKDGNMKE 417 (605)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~ 417 (605)
..|.+++|+.+++.+.+.. +.+...+..+..++...+ ++++|+..+..+.... +++...+ ......+...+.+++
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHH
Confidence 3445677788888777764 336666666666666654 4778888888887763 2234443 344456667788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHH
Q 036303 418 TLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFS 497 (605)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (605)
|+..++.+++.+ +.+...+..++.++...|++++|...+...... .|+. ......+...+..+++...+.
T Consensus 163 Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~---~~~~~~~~~l~~~~~a~~~~~ 232 (334)
T d1dcea1 163 ELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV------LLKE---LELVQNAFFTDPNDQSAWFYH 232 (334)
T ss_dssp HHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH------HHHH---HHHHHHHHHHCSSCSHHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh------HHHH---HHHHHHHHHhcchhHHHHHHH
Confidence 888888888776 557778888888888888888776666554442 1221 122233445566677777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 498 DMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 498 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
+..... +++...+..++..+...|++.+|...+.+.++ ..| +..++..++.+|...|++++|...++++.+.+|..
T Consensus 233 ~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~ 309 (334)
T d1dcea1 233 RWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 309 (334)
T ss_dssp HHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence 777632 23344555666677777888888888887775 445 57788888888999999999999999998888854
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=3.3e-09 Score=96.05 Aligned_cols=184 Identities=11% Similarity=0.101 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036303 346 EKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEM 425 (605)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 425 (605)
++|..+|++..+...+.+...+...+......|+++.|..+|++++..........|...+..+.+.|+.+.|..+|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34444444444332223333444444444444444444444444443321112223444444444444555555555554
Q ss_pred HHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-
Q 036303 426 LEAKITPSVFTVSSLIHG-LFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDN- 503 (605)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 503 (605)
++.. +.+...+...+.. +...|+.+.|..+|+.++... +.+...|...+..+...|+++.|..+|+++++..
T Consensus 161 l~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-----p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 4433 2222222222222 222345555555555555442 3334445555555555555555555555554421
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036303 504 LRPD--NCTYTTMLRGLLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 504 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (605)
..|+ ...|...+..-...|+.+.+..+.+++.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1221 1244444444444555555555555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=4.6e-10 Score=99.25 Aligned_cols=194 Identities=13% Similarity=-0.078 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 036303 331 TYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLS 410 (605)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (605)
++..+..+|.+.|++++|+..|++.++.. +.+..++..+..++...|++++|+..|++++... +.+..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 44445555666666666666666666543 2245556666666666666666666666666543 223445555666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC--
Q 036303 411 KDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ-- 488 (605)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 488 (605)
..|++++|...++..++.. +.+......+...+.+.+..+.+..+....... .++...+. ++..+.....
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~ 188 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS------DKEQWGWN-IVEFYLGNISEQ 188 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS------CCCSTHHH-HHHHHTTSSCHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc------chhhhhhh-HHHHHHHHHHHH
Confidence 6666666666666666543 333433333333444444433333333332221 11111111 1111111111
Q ss_pred --HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 489 --ILKASKLFSDMRSDNLRPDN-CTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 489 --~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.+.+...+..... ..|+. .+|..+...+...|++++|...+++++.
T Consensus 189 ~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 189 TLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp HHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1222222221111 12222 2455566677777777777777777765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.19 E-value=1.5e-10 Score=106.81 Aligned_cols=215 Identities=7% Similarity=-0.062 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHH
Q 036303 273 GNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVG--QLEGAEGLLQKMYKEGILANVVTYN-SLIDGYCKEGDMEKAL 349 (605)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~ 349 (605)
|.+++|+..++...+.. +.+...|..+..++...+ ++++|...+.++..... .+...+. .....+...+.++.|+
T Consensus 87 ~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 87 ALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHH
Confidence 34555666666655532 234444444444444443 35566666666655432 2333332 3334455556666666
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 350 SVCSQMTEKGVEPNVVTFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAK 429 (605)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 429 (605)
..++.+.+.++ -+...|..+..++...|++++|...+...... .|+ .......+...+..+++...+...+...
T Consensus 165 ~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~ 238 (334)
T d1dcea1 165 AFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (334)
T ss_dssp HHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence 66666665542 25555556666666666555554333222211 000 0111122233344444444444444433
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 430 ITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
+++...+..++..+...|+.++|+..+.+..... +.+..++..++.++...|++++|++.++++.+
T Consensus 239 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 239 -AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-----KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp -CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred -cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-----chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2333333334444444455555555555544431 22334444445555555555555555555554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.3e-08 Score=84.18 Aligned_cols=126 Identities=10% Similarity=-0.033 Sum_probs=83.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 036303 441 IHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLL 519 (605)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 519 (605)
+..+...|++++|++.|.++. +|++.+|..++.++...|++++|++.|+++++ +.|+ ...|..+..++.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~--------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ--------DPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHH
Confidence 344566677777777766532 45556666677777777777777777777776 4443 346666667777
Q ss_pred hcCCHHHHHHHHHHHHHCC--------------CCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036303 520 RAKRMLDVMMLLADMIKMG--------------IVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~--------------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 576 (605)
+.|++++|+..|++++... ... ...++..++.++.+.|++++|.+.++++.+..|+.
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 7777777777777766421 011 13566777888888888888888888888777753
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=8.7e-09 Score=92.26 Aligned_cols=203 Identities=9% Similarity=-0.002 Sum_probs=125.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHH
Q 036303 371 IDGQCKAGNIDAAMGLYTEMVIK----SLVP-DVVVFTALIDGLSKDGNMKETLRLYKEMLEA----K-ITPSVFTVSSL 440 (605)
Q Consensus 371 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l 440 (605)
...|...|++++|.+.|.++... +-++ -..+|..+..+|...|++++|...+++..+. + ......++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 45566777777777777766542 1111 1246677777788888888888888776543 1 01113345566
Q ss_pred HHHHH-hcCCHHHHHHHHHHhhhccCCCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-----CH-HHHH
Q 036303 441 IHGLF-KNGRISNALNFFLEKTDKTDGGYCSPN-HVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-----DN-CTYT 512 (605)
Q Consensus 441 ~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~-~~~~ 512 (605)
+..+. ..|++++|++.|+++.......+.++. ..++..++..+...|++++|++.|+++....... .. ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 66664 458888888888887654322211221 3456778888889999999999999887732111 11 1234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-cc---HHHHHHHHHHHHh--cCChhHHHHHHHHHHhcC
Q 036303 513 TMLRGLLRAKRMLDVMMLLADMIKMGIV-PD---AVINQVMVRGYQE--NGDLKSAFRCSEFLKESR 573 (605)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~ 573 (605)
..+..+...|++..|.+.++++.+.... ++ ......++.++.. .+.+++|+..|+++.+++
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 4455666788999999988888753211 11 2344556666655 345788888887666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.95 E-value=2.7e-09 Score=90.02 Aligned_cols=112 Identities=10% Similarity=-0.016 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHH
Q 036303 471 PNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQV 548 (605)
Q Consensus 471 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 548 (605)
|+...+...+..+...|++++|+..|+++++ +.| ++..|..++.+|.+.|++++|+..++++++ +.| +..+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHH
Confidence 4445555666667777777777777777666 334 344666666777777777777777777665 445 4666777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCccchhh
Q 036303 549 MVRGYQENGDLKSAFRCSEFLKESRIGSSETEGHTTRS 586 (605)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 586 (605)
++.+|.+.|++++|+..|+++.+++|.........+..
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 77777777777777777777777766555544444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=6.8e-09 Score=78.00 Aligned_cols=99 Identities=10% Similarity=-0.028 Sum_probs=85.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQE 555 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 555 (605)
..-+..+...|++++|+..|+++++ ..|+ ...|..+..++...|++++|+..+.++++.. +.++..|..++.++..
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHH
Confidence 3456778889999999999999998 4554 5588899999999999999999999999843 2378999999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCC
Q 036303 556 NGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 556 ~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.|++++|+..++++.+.+|+++.
T Consensus 84 ~~~~~~A~~~~~~a~~~~p~~~~ 106 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHEANNPQ 106 (117)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999998653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.90 E-value=7.1e-06 Score=71.75 Aligned_cols=226 Identities=11% Similarity=-0.043 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 036303 329 VVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCK----AGNIDAAMGLYTEMVIKSLVPDVVVFTA 404 (605)
Q Consensus 329 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 404 (605)
+..+..|...+...+++++|++.|++..+.| +...+..|...|.. ..+...|...+......+ ++.....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3344455555555666666666666665554 34444445555544 445666666666665543 2233333
Q ss_pred HHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhccCCCCCCccHHHH
Q 036303 405 LIDGLS----KDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLF----KNGRISNALNFFLEKTDKTDGGYCSPNHVLY 476 (605)
Q Consensus 405 l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (605)
+...+. ..++.+.|...++...+.+. ......+...+. .......+...+..... ..+...+
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~ 145 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-------LNDGDGC 145 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-------TTCHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhc-------ccccchh
Confidence 333322 23456667777777666542 222223333332 23345666666666554 3455566
Q ss_pred HHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHHHHHH
Q 036303 477 AAIIQALCY----DGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLR----AKRMLDVMMLLADMIKMGIVPDAVINQV 548 (605)
Q Consensus 477 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 548 (605)
..+...+.. ..+...+...++...+.| +......+...+.. ..++++|+..|++..+.| ++..+..
T Consensus 146 ~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~ 219 (265)
T d1ouva_ 146 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 219 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHH
Confidence 666666664 456778888888887643 55566666666665 568999999999998866 5667788
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHhcCCCC
Q 036303 549 MVRGYQE----NGDLKSAFRCSEFLKESRIGS 576 (605)
Q Consensus 549 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 576 (605)
|+..|.. ..+.++|.++|+++.+++...
T Consensus 220 LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 220 LGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 8888876 458999999999999887553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=1.5e-07 Score=77.73 Aligned_cols=127 Identities=8% Similarity=-0.077 Sum_probs=103.4
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhH
Q 036303 58 LIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMK 137 (605)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 137 (605)
-+..+...|+++.|++.|+++. +++..+|..++.++...|++++|++.|++.++.++. +...|..+..++.+.|++++
T Consensus 11 ~g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 11 EGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHH
Confidence 4667888999999999999874 467788999999999999999999999999998643 78899999999999999999
Q ss_pred HHHHHHHHHhCCCC--------------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036303 138 ALNLFDEMIDKGIE--------------PT-VVIYTILIHGLCNENKMVEAESMFRSMRECGVV 186 (605)
Q Consensus 138 a~~~~~~~~~~~~~--------------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (605)
|+..|++.+..... ++ ..++..+..++.+.|++++|.+.|+......+.
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999998764111 01 245566778888899999999988888775443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=5.9e-08 Score=72.70 Aligned_cols=105 Identities=17% Similarity=0.105 Sum_probs=70.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036303 440 LIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLL 519 (605)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (605)
-+..+...|++++|+..|.++++.. +.+...|..++.++...|++++|+..++++++.+ +.++..|..+..++.
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-----CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHH
Confidence 4556667777777777777777653 4556667777777777777777777777777632 224556777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 520 RAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
..|++++|+..+++.++ ..| ++.++..+.++
T Consensus 83 ~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLK--HEANNPQLKEGLQNM 114 (117)
T ss_dssp HTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 77777777777777776 345 45555555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=2.8e-08 Score=79.58 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN-CTYTTMLRG 517 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 517 (605)
..+..+.+.|++++|+..|.++++ . -+.+...|..++.+|...|++++|+..|+++++ +.|+. ..|..++.+
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~-~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIE-L----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-H----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccc-c----chhhhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHH
Confidence 334445555555555555555543 1 122244444555555555555555555555554 23332 344455555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 036303 518 LLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~~ 536 (605)
+...|++++|...+++++.
T Consensus 88 ~~~~g~~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVK 106 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.80 E-value=6.5e-08 Score=86.41 Aligned_cols=177 Identities=7% Similarity=-0.128 Sum_probs=126.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CccHHHH
Q 036303 403 TALIDGLSKDGNMKETLRLYKEMLEA----KITP-SVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYC-SPNHVLY 476 (605)
Q Consensus 403 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~ 476 (605)
......|...|++++|...|.++.+. +-++ ...++..++.+|.+.|++++|++.+++.+......+. .....++
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 120 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence 33466788999999999999988763 2111 2457888999999999999999999988775432211 1123455
Q ss_pred HHHHHHHH-ccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-----c-HH
Q 036303 477 AAIIQALC-YDGQILKASKLFSDMRSD----NLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-----D-AV 544 (605)
Q Consensus 477 ~~l~~~~~-~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~-~~ 544 (605)
..++..|. ..|++++|++.++++.+. +..+. ..++..++..+...|++++|+..+++++...... . ..
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 66666664 469999999999998752 22222 2368888999999999999999999998642211 1 24
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 545 INQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
.+...+.++...|+++.|...++++.+.+|.....
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s 235 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence 45667778889999999999999999999876544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.79 E-value=5.6e-06 Score=72.45 Aligned_cols=191 Identities=13% Similarity=0.031 Sum_probs=103.7
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIK----KGKFDSVWEFYEEMVLCGLVADVVTYGVLI 126 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 126 (605)
+|..++.|+..+.+.|++++|+++|++.....+..++..|...|.. ..++..|...++.....+ ++.....+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 4667777888888888888888888877545567777777777765 557777777777777654 334444444
Q ss_pred HHHHc----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 036303 127 DCCCG----QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCN----ENKMVEAESMFRSMRECGVVPNLYTYNALMDG 198 (605)
Q Consensus 127 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 198 (605)
..+.. ..+.+.|...++...+.|. ......+...+.. ......+...+...... .+...+..+...
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~ 151 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSL 151 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhh
Confidence 44332 3566777777777766542 2222333333332 33445555555554443 234445555554
Q ss_pred Hhc----cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 036303 199 YCK----VADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCK----VGELRAAGNFFVHMAKF 253 (605)
Q Consensus 199 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 253 (605)
+.. ..+...+...++...+.| +......+...+.. ..+++.|...|....+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~ 211 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 211 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcc
Confidence 443 233444444444444332 33333344433332 23444444444444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.1e-07 Score=76.01 Aligned_cols=94 Identities=9% Similarity=0.060 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHH
Q 036303 402 FTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQ 481 (605)
Q Consensus 402 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 481 (605)
+......|.+.|++++|+..|+++++.+ +.+...+..++.++...|++++|+..|+++++.. +.+..+|..++.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-----p~~~~a~~~~g~ 86 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-----KKYIKGYYRRAA 86 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-----ccchHHHHHHHH
Confidence 3344555666666666666666666655 4556666666666666666666666666666542 344556666666
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 036303 482 ALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~ 501 (605)
++...|++++|+..++++..
T Consensus 87 ~~~~~g~~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 87 SNMALGKFRAALRDYETVVK 106 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.2e-08 Score=76.70 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=82.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcc-HHHHHHHHH
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAK---RMLDVMMLLADMIKMGIVPD-AVINQVMVR 551 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~ 551 (605)
..++..+...+++++|++.|++++. ..| ++.++..++.++.+.+ ++++|+.++++++.....|+ ..++..++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 4567778888999999999999998 445 5568888999888754 45579999999887443333 458889999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 552 GYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 552 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
+|.+.|++++|++.|+++.+.+|++..+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A 108 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQA 108 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence 9999999999999999999999988654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.72 E-value=2.7e-08 Score=83.63 Aligned_cols=99 Identities=10% Similarity=-0.075 Sum_probs=75.5
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHH
Q 036303 397 PDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLY 476 (605)
Q Consensus 397 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (605)
|+...+...+..+...|++++|+..|.++++.. |.+...+..++.+|.+.|++++|+..|++++... +.+..+|
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-----p~~~~a~ 75 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-----GQSVKAH 75 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-----TTCHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-----CCcHHHH
Confidence 566666777777888888888888888877765 5677777788888888888888888888887642 3346677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
..++.+|...|++++|+..|+++.+
T Consensus 76 ~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 76 FFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788888888888888888887776
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.63 E-value=1e-07 Score=70.68 Aligned_cols=90 Identities=8% Similarity=0.053 Sum_probs=79.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHH
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQ 554 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 554 (605)
...+..+.+.|++++|+..|+++++ ..|+ ...|..+..++.+.|++++|+..++++++ +.| +..++..++.+|.
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHH
Confidence 3467778899999999999999998 5564 66899999999999999999999999998 456 6999999999999
Q ss_pred hcCChhHHHHHHHHHH
Q 036303 555 ENGDLKSAFRCSEFLK 570 (605)
Q Consensus 555 ~~g~~~~A~~~~~~~~ 570 (605)
..|++++|.+.+++.+
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 9999999999998864
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=7.5e-07 Score=71.69 Aligned_cols=84 Identities=6% Similarity=-0.069 Sum_probs=58.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRP-DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
+|+.+..+|.+.|++++|+..++++++ +.| ++..+..++.+|...|++++|+..|+++++ +.| +..+...+..+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhh--ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 455667777778888888888888777 455 445777777777788888888888888776 445 56666666666
Q ss_pred HHhcCChhHH
Q 036303 553 YQENGDLKSA 562 (605)
Q Consensus 553 ~~~~g~~~~A 562 (605)
..+.+...+.
T Consensus 140 ~~~~~~~~~~ 149 (170)
T d1p5qa1 140 QQRIRRQLAR 149 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6555544443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=2.6e-07 Score=74.47 Aligned_cols=101 Identities=6% Similarity=-0.082 Sum_probs=78.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-
Q 036303 477 AAIIQALCYDGQILKASKLFSDMRSD-NLRP-------------DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP- 541 (605)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 541 (605)
...+..+...|++++|+..|+++++. +..+ ...+|..+..+|.+.|++++|+..++++++ +.|
T Consensus 17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~--~~p~ 94 (170)
T d1p5qa1 17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--LDSN 94 (170)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh--cccc
Confidence 34455566666666666666666542 0000 123566788889999999999999999998 456
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 542 DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
++.++..++.+|...|++++|+..|+++.+++|++...
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~ 132 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 69999999999999999999999999999999986544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.53 E-value=6.3e-07 Score=70.70 Aligned_cols=100 Identities=8% Similarity=-0.110 Sum_probs=77.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCC----CCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-
Q 036303 478 AIIQALCYDGQILKASKLFSDMRSDN----LRP-----------DNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP- 541 (605)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 541 (605)
.-+..+.+.|++.+|+..|+++++.- ..+ ...+|..+..+|.+.|++++|+..+.++++ +.|
T Consensus 22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~--~~p~ 99 (153)
T d2fbna1 22 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK--IDKN 99 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc--ccch
Confidence 34445556666666666666665410 001 123567788899999999999999999998 456
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 542 DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
+..+|..++.+|...|++++|+..++++.+.+|++...
T Consensus 100 ~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~ 137 (153)
T d2fbna1 100 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 137 (153)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 68999999999999999999999999999999987654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=4.9e-07 Score=67.62 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=52.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ---ILKASKLFSDMRSDNLRPDN-CTYTTM 514 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l 514 (605)
.++..+...+++++|.+.|++++... +.++.++..++.++.+.++ +++|+.+++++.+.+..|+. .++..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-----p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~L 78 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-----SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL 78 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 34455555566666666666666543 4455556666666655433 33466666666552221221 245556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 036303 515 LRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
+.+|.+.|++++|++.|+++++
T Consensus 79 g~~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 79 AVGNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 6666666666666666666665
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.49 E-value=5.4e-07 Score=66.59 Aligned_cols=90 Identities=10% Similarity=0.013 Sum_probs=54.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 036303 439 SLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRG 517 (605)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 517 (605)
..+..+.+.|++++|+..|++++... +.+..+|..++.++.+.|++++|+..++++++ +.|+ ...|..+..+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~ 93 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-----PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVS 93 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-----cccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHH
Confidence 34455566666666666666666543 33456666666666666666666666666665 3443 4466666666
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 036303 518 LLRAKRMLDVMMLLADMI 535 (605)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~ 535 (605)
|...|++++|.+.+++.+
T Consensus 94 y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 94 HTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHh
Confidence 666666666666666543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=5.3e-07 Score=68.59 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=77.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc--------HHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPD--------AVI 545 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~ 545 (605)
.+..++..+...|++++|+..|+++++ +.|+ ...+..+..+|.+.|++++|+..++++++. .|+ ..+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~~~~~~~~~~~a~~ 81 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIAKA 81 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345677888889999999999999888 4454 568888888999999999999999998762 221 357
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036303 546 NQVMVRGYQENGDLKSAFRCSEFLKESRIG 575 (605)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 575 (605)
|..++.++...+++++|+.++++....++.
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 788888999999999999999998876653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.44 E-value=2.1e-06 Score=67.53 Aligned_cols=77 Identities=8% Similarity=-0.077 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHH
Q 036303 474 VLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVR 551 (605)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~ 551 (605)
.++..++.+|.+.|++++|++.++++++ +.|+ ..+|..++.++...|++++|+..|+++++ +.| +..+...+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~--~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccc--ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 4677888999999999999999999998 5564 56999999999999999999999999998 556 5666666655
Q ss_pred HHH
Q 036303 552 GYQ 554 (605)
Q Consensus 552 ~~~ 554 (605)
+..
T Consensus 144 ~~~ 146 (153)
T d2fbna1 144 CVN 146 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.44 E-value=3.6e-06 Score=67.45 Aligned_cols=93 Identities=6% Similarity=-0.021 Sum_probs=64.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHH
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRG 552 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 552 (605)
.|..+..+|...|++++|+..++++++ +.|+ ...|..+..++...|++++|+..|+++++ +.| +..+...+..+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~--l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhh--cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 455677777888888888888888887 4444 44777888888888888888888888887 445 56666676666
Q ss_pred HHhcCChhH-HHHHHHHHHh
Q 036303 553 YQENGDLKS-AFRCSEFLKE 571 (605)
Q Consensus 553 ~~~~g~~~~-A~~~~~~~~~ 571 (605)
..+.+...+ ..+.+.++.+
T Consensus 142 ~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 142 QKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHh
Confidence 655554443 3345554444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1.7e-06 Score=65.67 Aligned_cols=101 Identities=10% Similarity=0.128 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--------H
Q 036303 437 VSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD--------N 508 (605)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~ 508 (605)
+..++..+...|++++|+..|.++++.. +.+...+..+..+|...|++++|++.++++++ +.|+ .
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a 79 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-----PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIA 79 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHH
Confidence 3445566666777777777777766653 34566666677777777777777777777665 2221 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHH
Q 036303 509 CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVIN 546 (605)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 546 (605)
.+|..+...+...+++++|+..+++.+. ..++..+.
T Consensus 80 ~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 115 (128)
T d1elra_ 80 KAYARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVL 115 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCHHHH
Confidence 2455566666667777777777777665 23444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=9.6e-08 Score=92.28 Aligned_cols=225 Identities=10% Similarity=0.027 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 312 GAEGLLQKMYKEGILAN-VVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNV-VTFSSLIDGQCKAGNIDAAMGLYTE 389 (605)
Q Consensus 312 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 389 (605)
+|.+.+++..+.. |+ ...+..+..++...+++++| |++++..+ |+. ...+. ....-...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l~--p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~--e~~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLK--ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKV--EQDLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHH--GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTH--HHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhH--HHHHHHHHHHHHHHHHHH
Confidence 5666777766542 22 23444555566666666554 55655431 221 11111 111111123455566665
Q ss_pred HHHCCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q 036303 390 MVIKSLVPDVVVFTALIDG--LSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG 467 (605)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (605)
..+....++.......... ....+.++.++..+....... +++...+..++..+.+.|+.++|...+......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---- 149 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---- 149 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH----
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC----
Confidence 5544333333222221111 222344445544444443332 334555666677777777777777776665542
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHH
Q 036303 468 YCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDN-CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVIN 546 (605)
Q Consensus 468 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 546 (605)
....++..++..+...|++++|+..|+++.+ +.|+. ..|+.|+..+...|+..+|...|.+.+... +|-+.++
T Consensus 150 ---~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~ 223 (497)
T d1ya0a1 150 ---ICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAAS 223 (497)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHH
T ss_pred ---CHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHH
Confidence 1134566677777777777777777777776 45554 477777777777777777777777777532 3456667
Q ss_pred HHHHHHHHhc
Q 036303 547 QVMVRGYQEN 556 (605)
Q Consensus 547 ~~l~~~~~~~ 556 (605)
..|+..+.+.
T Consensus 224 ~nL~~~~~~~ 233 (497)
T d1ya0a1 224 TNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7776665543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.32 E-value=5.3e-06 Score=66.61 Aligned_cols=67 Identities=10% Similarity=0.019 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 510 TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.|..+..++.+.|++++|+..+.++++ +.| ++.+|..++.+|...|++++|+..|+++.+++|++..
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~ 146 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 455556666666666666666666665 334 4666666666666666666666666666666666543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.31 E-value=2.5e-06 Score=68.60 Aligned_cols=124 Identities=13% Similarity=0.059 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC----------CC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 036303 435 FTVSSLIHGLFKNGRISNALNFFLEKTDKTDGG----------YC-SPNHVLYAAIIQALCYDGQILKASKLFSDMRSDN 503 (605)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 503 (605)
..+...+..+...|++++|++.|.+++...... .. +.+...|..+..++.+.|++++|+..++++++
T Consensus 28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~-- 105 (169)
T d1ihga1 28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-- 105 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh--
Confidence 345566778889999999999999998731100 01 22344667788899999999999999999998
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHH
Q 036303 504 LRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSA 562 (605)
Q Consensus 504 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 562 (605)
+.|+ ...|..++.++...|++++|+..|+++++ +.| +..+...+..+..+.....++
T Consensus 106 ~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 106 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5565 55899999999999999999999999998 455 677777777766555444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2.7e-07 Score=89.08 Aligned_cols=269 Identities=11% Similarity=-0.011 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 036303 276 FEAMSLCSEMEKFEISPD-VFTYNILIKGLCGVGQLEGAEGLLQKMYKEGILANVV-TYNSLIDGYCKEGDMEKALSVCS 353 (605)
Q Consensus 276 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 353 (605)
-+|.+.|++.... .|+ ...+..+..++...+++++| +++++..+ |+.. ..+.. ...-...+..+...++
T Consensus 3 ~eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e--~~Lw~~~y~~~ie~~r 73 (497)
T d1ya0a1 3 LQSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVE--QDLWNHAFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHH--HHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHH--HHHHHHHHHHHHHHHH
Confidence 3688899988763 344 44566677788888888776 66666542 2211 11111 1111122456777777
Q ss_pred HHhhCCCCcCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036303 354 QMTEKGVEPNVVTFSSLI--DGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKIT 431 (605)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 431 (605)
...+....++........ ......+.++.++..+....... +++...+..+...+.+.|+.+.|...+.......
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 150 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-- 150 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--
T ss_pred HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence 776654333332222221 22233455666666555544332 3355667778888899999999999888776532
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 036303 432 PSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTY 511 (605)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 511 (605)
...++..++..+...|++++|+..|.+++... +.+...|+.++..+...|+..+|+..|.+++... +|-+.++
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-----P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~ 223 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-----PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAAS 223 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHH
Confidence 24578889999999999999999999999874 5567889999999999999999999999999843 4566788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 512 TTMLRGLLRAKRMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 512 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
..|...+.+..+..++.. .....++ ...+..+...+...++.+....+.+++
T Consensus 224 ~nL~~~~~~~~~~~~~~~------~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 224 TNLQKALSKALESRDEVK------TKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHHHHHHHHHTTSCCCCC------SSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhc------cccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 888877754432211100 0000011 233445555667777777776655544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.24 E-value=2e-05 Score=62.94 Aligned_cols=117 Identities=10% Similarity=0.016 Sum_probs=74.7
Q ss_pred hHhhcCCchHHHHHHHHHHHHHhhcCCCcccHHHHHHHHhhCcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc--CCC
Q 036303 4 VLANAKLYKNARCLIKDVTENLLKSRKPHHVCYSVFNALNSLEIPKFNPSVFSTLIIAFSEMGHIEEALWVYRKI--EVL 81 (605)
Q Consensus 4 ~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 81 (605)
.+...|+|.+|...|...+..+................+ ...+|..++.+|.+.|++++|+..++++ ..|
T Consensus 24 ~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~--------~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 24 VYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF--------LLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchh--------HHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 577889999999999998876543333332222222221 2234666777777778888777777766 356
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 036303 82 PAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCC 129 (605)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (605)
.+..+|..++.++...|++++|...|++++...+ .+..+...+..+.
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQ 142 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 6677777777777777777777777777777642 2444444444433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.16 E-value=9.6e-07 Score=76.27 Aligned_cols=131 Identities=16% Similarity=0.166 Sum_probs=92.0
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcC
Q 036303 444 LFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNC-TYTTMLRGLLRAK 522 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g 522 (605)
..+.|++++|+..+++.++.. +.|...+..++..++..|++++|.+.++++.+ +.|+.. .+..+...+...+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-----P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~ 78 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-----PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQ 78 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhcc
Confidence 346789999999999998874 56788888999999999999999999999988 567654 5545555554444
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCc
Q 036303 523 RMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSETEG 581 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 581 (605)
..+++..........+-+++...+...+..+...|++++|...++++.+..|.......
T Consensus 79 ~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 79 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred ccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 43333221111111111123444556677889999999999999999999998766544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=0.0023 Score=56.35 Aligned_cols=292 Identities=15% Similarity=0.084 Sum_probs=144.0
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 036303 222 PNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILI 301 (605)
Q Consensus 222 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 301 (605)
|+..-...++..|.+.|.++.|..++..+.. |..++..+.+.+++..|.+.+... .+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 4555556677777788888888888875532 455677777788888887776654 2455777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHH
Q 036303 302 KGLCGVGQLEGAEGLLQKMYKEGILANVVTYNSLIDGYCKEGDMEKALSVCSQMTEKGVEPNVVTFSSLIDGQCKAGNID 381 (605)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 381 (605)
..+.......-+ .+.......+......++..|...|.++....+++..... -..+...++.++..|++.+ .+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~ 149 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQ 149 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HH
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hH
Confidence 777766554432 2222223345556667777788888888888888776654 2446666777777777643 33
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 036303 382 AAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKT 461 (605)
Q Consensus 382 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (605)
+-.+.+.... +......++..|...+-+.++..++.++-.. + +++.....+..+..++..+.+-..
T Consensus 150 kl~e~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~----~----~A~~~~i~~~~~~~~~~~f~e~~~ 215 (336)
T d1b89a_ 150 KMREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEY----D----NAIITMMNHPTDAWKEGQFKDIIT 215 (336)
T ss_dssp HHHHHHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH----H----HHHHHHHHSTTTTCCHHHHHHHHH
T ss_pred HHHHHHHhcc------ccCCHHHHHHHHHHcCChHHHHHHHHhcCCH----H----HHHHHHHHcchhhhhHHHHHHHHH
Confidence 3333333221 1112233445566666665555555443210 0 011111111111111122211112
Q ss_pred hccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 036303 462 DKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP 541 (605)
Q Consensus 462 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 541 (605)
+ ..|+..|-..+..|... +++-...++..+.. .-|. ..++..+.+.+++.-...+++...+.+
T Consensus 216 k-------~~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~---~~d~---~r~V~~~~k~~~l~li~p~Le~v~~~n--- 278 (336)
T d1b89a_ 216 K-------VANVELYYRAIQFYLEF-KPLLLNDLLMVLSP---RLDH---TRAVNYFSKVKQLPLVKPYLRSVQNHN--- 278 (336)
T ss_dssp H-------CSSTHHHHHHHHHHHHH-CGGGHHHHHHHHGG---GCCH---HHHHHHHHHTTCTTTTHHHHHHHHTTC---
T ss_pred c-------cCChHHHHHHHHHHHHc-CHHHHHHHHHHhcc---CCCH---HHHHHHHHhcCCcHHHHHHHHHHHHcC---
Confidence 1 11222233333333322 22222333332221 1111 234455556667777777776655433
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHH
Q 036303 542 DAVINQVMVRGYQENGDLKSAFRCS 566 (605)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~ 566 (605)
+..+...+.+.|...+|++.-++..
T Consensus 279 ~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 279 NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 3568889999999999976655444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=0.0024 Score=56.29 Aligned_cols=135 Identities=13% Similarity=0.096 Sum_probs=78.9
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCC 130 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (605)
+..-...++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+. .+..+|..+...+.
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 80 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHH
Confidence 333455677778888888888888887753 566777788888888887776544 15667777777777
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccC
Q 036303 131 GQGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVA 203 (605)
Q Consensus 131 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 203 (605)
+......+ .+...+...+......++..|-..|.+++...+++..... -.++...++.++..|++.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 76655443 1222222335555566777788888888888888776543 2235556677777777653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.10 E-value=7.9e-06 Score=63.29 Aligned_cols=114 Identities=16% Similarity=0.055 Sum_probs=63.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhhccCCCCCCccHHHHHHHH
Q 036303 411 KDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKN----------GRISNALNFFLEKTDKTDGGYCSPNHVLYAAII 480 (605)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 480 (605)
+.+.+++|...|+..++.. |.+..++..++.++... +.+++|+..|+++++.. +.+..+|..++
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-----P~~~~a~~~lG 82 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-----PKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-----chhhHHHhhHH
Confidence 4445666666666666654 55566666666555432 33456677777666643 34456666666
Q ss_pred HHHHccC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 481 QALCYDG-----------QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMG 538 (605)
Q Consensus 481 ~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 538 (605)
.+|...| .+++|.+.|+++++ +.|+...+...+..+ .+|.+++.+..+.|
T Consensus 83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 6665443 24566666666666 556655544444333 34444444444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.09 E-value=4.9e-05 Score=60.97 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCccHHH
Q 036303 474 VLYAAIIQALCYDGQILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMI-----KMGIVPDAVI 545 (605)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 545 (605)
..+..++.++...|++++|+..++++++ ..|. ...|..++.++...|+..+|++.|+++. +.|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 4566677777788888888888888877 4554 4477788888888888888888887763 3577777654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.08 E-value=7.7e-06 Score=64.55 Aligned_cols=106 Identities=10% Similarity=-0.023 Sum_probs=80.6
Q ss_pred HHHHHH--HHHHHccCCHHHHHHHHHHHHhCC-CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 036303 474 VLYAAI--IQALCYDGQILKASKLFSDMRSDN-LRPD----------NCTYTTMLRGLLRAKRMLDVMMLLADMIKM--- 537 (605)
Q Consensus 474 ~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 537 (605)
.+|..+ +..+...|++++|+..|+++++.. -.|+ ...|..+..+|...|++++|...+++.++.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 345544 455667899999999999998721 1121 347888999999999999999999998752
Q ss_pred --CCCcc-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 538 --GIVPD-----AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 538 --~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
...++ ..++..++.+|...|++++|...|+++.++.|+....
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~ 136 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 136 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence 12222 3367889999999999999999999999998765544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.04 E-value=2.8e-05 Score=62.47 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCCC
Q 036303 509 CTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVP-DAVINQVMVRGYQENGDLKSAFRCSEFLKE-----SRIGSSE 578 (605)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 578 (605)
..+..++.++...|++++|+..++++++ ..| +...|..++.+|.+.|++++|++.|+++.+ ++.+.++
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 3677888999999999999999999998 556 799999999999999999999999999854 4655443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.94 E-value=8.7e-06 Score=63.07 Aligned_cols=90 Identities=8% Similarity=-0.085 Sum_probs=62.1
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHhCCCCCC-HHHHH
Q 036303 444 LFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYD----------GQILKASKLFSDMRSDNLRPD-NCTYT 512 (605)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~-~~~~~ 512 (605)
|.+.+.+++|+..|+.+++.. |.+..++..++.++... +.+++|+..|+++++ +.|+ ..+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-----P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~ 79 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVW 79 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-----CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHh
Confidence 445667889999999988874 56677788888777643 345678888888877 5554 44777
Q ss_pred HHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCcc
Q 036303 513 TMLRGLLRAK-----------RMLDVMMLLADMIKMGIVPD 542 (605)
Q Consensus 513 ~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~ 542 (605)
.+..+|...| .+++|.+.|+++++ +.|+
T Consensus 80 ~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~ 118 (145)
T d1zu2a1 80 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPD 118 (145)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTT
T ss_pred hHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCC
Confidence 7777776543 35667777777776 4554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=6.1e-05 Score=53.07 Aligned_cols=68 Identities=10% Similarity=0.053 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCcc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 036303 511 YTTMLRGLLRAKRMLDVMMLLADMIKMG-----IVPD-AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSE 578 (605)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 578 (605)
.-.++..+.+.|++++|+..++++++.. ..++ ..++..++.+|.+.|++++|+..++++++.+|++..
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~ 81 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHH
Confidence 3355666666777777777766665421 1111 556777777777777777777777777777776654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.78 E-value=3.6e-05 Score=66.17 Aligned_cols=121 Identities=11% Similarity=0.021 Sum_probs=74.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCC
Q 036303 409 LSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQ 488 (605)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 488 (605)
..+.|++++|+..+++.++.. |.+...+..++..++..|++++|+..++...+.. +.+...+..+...+...+.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-----P~~~~~~~~l~~ll~a~~~ 79 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-----PEYLPGASQLRHLVKAAQA 79 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHhccc
Confidence 345688888888888888775 6677788888888888888888888888887752 2334444444444433333
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 489 ILKASKLFSDMRSDNLRPD-NCTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
.+++..........+ .|+ ...+...+..+...|+.++|.+.++++.+
T Consensus 80 ~~~a~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 80 RKDFAQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp HHHHTTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 333222211111111 222 22344445566678888888888888776
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.59 E-value=0.001 Score=51.76 Aligned_cols=96 Identities=11% Similarity=-0.026 Sum_probs=67.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCCC-------ccHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----CCCCCH
Q 036303 441 IHGLFKNGRISNALNFFLEKTDKTDGGYCS-------PNHVLYAAIIQALCYDGQILKASKLFSDMRSD-----NLRPDN 508 (605)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~ 508 (605)
+..+...|++++|+..|++.+...+..+-. .....|+.+..+|...|++++|+..++++++. ...++.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 444566778888888888777643321100 02356778888889999999999888887751 122221
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036303 509 -----CTYTTMLRGLLRAKRMLDVMMLLADMIK 536 (605)
Q Consensus 509 -----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 536 (605)
..+..+..+|...|++++|+..|+++++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2466778899999999999999999875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.0005 Score=48.14 Aligned_cols=64 Identities=6% Similarity=-0.017 Sum_probs=40.3
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036303 51 NPSVFSTLIIAFSEMGHIEEALWVYRKIE---------VLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCG 114 (605)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (605)
+++.+..++..+.+.|++++|+..|+++. ......++..++.++.+.|++++|+..++++++..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 45566677777777777777777776551 11113456666666666666666666666666654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.16 E-value=0.007 Score=45.22 Aligned_cols=111 Identities=8% Similarity=-0.039 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 036303 449 RISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLR----AKRM 524 (605)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 524 (605)
++++|+++|++..+.. +......+. .....+.++|.+++++..+.| ++.....|...|.. ..+.
T Consensus 8 d~~~A~~~~~kaa~~g-------~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~ 75 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-------EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDL 75 (133)
T ss_dssp HHHHHHHHHHHHHHTT-------CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC-------Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhh
Confidence 5677888888877642 222222332 234567889999999988754 44555566666654 4578
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCC
Q 036303 525 LDVMMLLADMIKMGIVPDAVINQVMVRGYQE----NGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 525 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 574 (605)
++|.++|++..+.| ++.....|+..|.. ..|.++|.++++++.+++.
T Consensus 76 ~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 76 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 99999999998866 45667778888776 5689999999999988764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.13 E-value=0.0023 Score=46.05 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 036303 505 RPDNCTYTTMLRGLLRAK---RMLDVMMLLADMIKMGIVPD-AVINQVMVRGYQENGDLKSAFRCSEFLKESRIGSSET 579 (605)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 579 (605)
.|...+-..+++++.+.. +.++++.+++...+.+ +.+ ...+..++-+|.+.|++++|+++++++++.+|++..+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 466667778888888654 4568999999888632 224 4688889999999999999999999999999987643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.74 E-value=0.012 Score=43.86 Aligned_cols=81 Identities=9% Similarity=-0.015 Sum_probs=35.7
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhc----cCC
Q 036303 133 GDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCN----ENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCK----VAD 204 (605)
Q Consensus 133 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~ 204 (605)
.+.++|+..+++..+.| ++.....|...|.. ..+.++|.++|+...+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34445555555544443 33333334433332 234455555555555443 22333334333332 234
Q ss_pred hHHHHHHHHHHHhCC
Q 036303 205 VNRALEFYHEMLHHN 219 (605)
Q Consensus 205 ~~~a~~~~~~~~~~~ 219 (605)
..+|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 555555555555444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.46 Score=43.70 Aligned_cols=422 Identities=8% Similarity=-0.021 Sum_probs=200.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHc
Q 036303 55 FSTLIIAFSEMGHIEEALWVYRKIEVLPAIQACNALLNGLIK--KGKFDSVWEFYEEMVLCGLVA-DVVTYGVLIDCCCG 131 (605)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 131 (605)
.+..+....+.|+..++..+...+.+.| ...|...-..-.. .....+...+++ +..-.| ........+..+.+
T Consensus 9 ~y~~a~~a~~~~~~~~~~~~~~~L~dyp-L~pYl~~~~l~~~~~~~~~~~i~~Fl~---~~p~~P~~~~lr~~~l~~L~~ 84 (450)
T d1qsaa1 9 RYAQIKQAWDNRQMDVVEQMMPGLKDYP-LYPYLEYRQITDDLMNQPAVTVTNFVR---ANPTLPPARTLQSRFVNELAR 84 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSGGGTTST-THHHHHHHHHHHTGGGCCHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHhhhcCCC-CHHHHHHHHHHhccccCCHHHHHHHHH---HCCCChhHHHHHHHHHHHHHh
Confidence 3345556677788888888877775444 3334333222222 223333333332 221111 11122333455666
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHH
Q 036303 132 QGDVMKALNLFDEMIDKGIEPTVVIYTILIHGLCNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEF 211 (605)
Q Consensus 132 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 211 (605)
.+++...+..+. ..+.+...-..++.+....|+.+.|...+..+-..|.. ....+..+.
T Consensus 85 ~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~--------------- 143 (450)
T d1qsaa1 85 REDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLF--------------- 143 (450)
T ss_dssp TTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHH---------------
T ss_pred ccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHH---------------
Confidence 777665443331 12445555566777777788888777776666544322 222333333
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 036303 212 YHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAGNFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEIS 291 (605)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 291 (605)
..+...| ..+...+-.-+......|++..|..+...+.. .........+..... ...+.... ... +
T Consensus 144 -~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~---p~~~~~~~---~~~--~ 209 (450)
T d1qsaa1 144 -SVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLANN---PNTVLTFA---RTT--G 209 (450)
T ss_dssp -HHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHC---GGGHHHHH---HHS--C
T ss_pred -HHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhC---hHhHHHHH---hcC--C
Confidence 3333332 22333333333334445566655555443211 112222333333221 11111111 111 1
Q ss_pred CChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHhhCCCCcCHH
Q 036303 292 PDVFTYNILIKGLCG--VGQLEGAEGLLQKMYKEGILANVVTYNSLID----GYCKEGDMEKALSVCSQMTEKGVEPNVV 365 (605)
Q Consensus 292 ~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 365 (605)
.+......+..++.+ ..+.+.+...+........ .+...+..+-. .....+..+.+...+......+ .+..
T Consensus 210 ~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~ 286 (450)
T d1qsaa1 210 ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTS 286 (450)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHH
T ss_pred CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchH
Confidence 222222222222222 2466777777766655422 22222222222 2233455566766666665543 2344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036303 366 TFSSLIDGQCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLF 445 (605)
Q Consensus 366 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (605)
...-.+......+++..+...+..+.... .......--+..++...|+.+.|...|..+.. .++ -|..+.. .
T Consensus 287 ~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa--~ 358 (450)
T d1qsaa1 287 LIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAA--Q 358 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHH--H
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHH--H
Confidence 44444455566678888777777664321 12333444566777788888888888887764 233 2222211 1
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036303 446 KNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRML 525 (605)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 525 (605)
+.|..-. +-...........+..+ ... ..+..+...|+...|...+..+... . +......+.....+.|.++
T Consensus 359 ~Lg~~~~---~~~~~~~~~~~~~~~~~-~~~-~ra~~L~~~g~~~~A~~e~~~l~~~-~--~~~~~~~la~lA~~~g~~~ 430 (450)
T d1qsaa1 359 RIGEEYE---LKIDKAPQNVDSALTQG-PEM-ARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWD 430 (450)
T ss_dssp HTTCCCC---CCCCCCCSCCCCHHHHS-HHH-HHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHH
T ss_pred HcCCCCC---CCcCCCCccHHHhhhcC-hHH-HHHHHHHHcCCchHHHHHHHHHHhC-C--CHHHHHHHHHHHHHCCChh
Confidence 2221100 00000000000000000 011 2345567889999999988888763 3 4445567777777889999
Q ss_pred HHHHHHHHH
Q 036303 526 DVMMLLADM 534 (605)
Q Consensus 526 ~A~~~~~~~ 534 (605)
.|+....+.
T Consensus 431 ~aI~a~~~~ 439 (450)
T d1qsaa1 431 LSVQATIAG 439 (450)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 988776654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.87 Score=41.71 Aligned_cols=418 Identities=11% Similarity=-0.015 Sum_probs=231.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc--cCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q 036303 88 NALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCG--QGDVMKALNLFDEMIDKGI-EPTVVIYTILIHGL 164 (605)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~ 164 (605)
...+.-..+.|+...+..+...+... | ...|...-..-.. ....++...++ .+..- +.....-...+..+
T Consensus 10 y~~a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl---~~~p~~P~~~~lr~~~l~~L 82 (450)
T d1qsaa1 10 YAQIKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFV---RANPTLPPARTLQSRFVNEL 82 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHH---HHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHH---HHCCCChhHHHHHHHHHHHH
Confidence 34455667888998888887776432 2 2333333222222 23444443333 33211 11122334456677
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 036303 165 CNENKMVEAESMFRSMRECGVVPNLYTYNALMDGYCKVADVNRALEFYHEMLHHNLQPNVVTFGVLMDGLCKVGELRAAG 244 (605)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 244 (605)
.+.+++......+. . .+++...-...+.+....|+...|...+..+-..| ...+..+..+...+
T Consensus 83 ~~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~---------- 146 (450)
T d1qsaa1 83 ARREDWRGLLAFSP----E-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVW---------- 146 (450)
T ss_dssp HHTTCHHHHHHHCC----S-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHH----------
T ss_pred HhccCHHHHHHhcc----C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHH----------
Confidence 78888766443331 1 22344444567778888999999998888877664 22333334444333
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036303 245 NFFVHMAKFGVFPNIFVYNCLIDGHCKAGNLFEAMSLCSEMEKFEISPDVFTYNILIKGLCGVGQLEGAEGLLQKMYKEG 324 (605)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 324 (605)
.+.| ..+...+-.-+......|++..|..+...+.. .........+.... +...+.... ...
T Consensus 147 ------~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~---~p~~~~~~~---~~~- 208 (450)
T d1qsaa1 147 ------RASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLAN---NPNTVLTFA---RTT- 208 (450)
T ss_dssp ------HHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHH---CGGGHHHHH---HHS-
T ss_pred ------HhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHh---ChHhHHHHH---hcC-
Confidence 3332 23444444455566677888888777654321 12222333333332 223332222 122
Q ss_pred CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhhCCCCcCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036303 325 ILANVVTYNSLIDGYCK--EGDMEKALSVCSQMTEKGVEPNVVTFSSLI----DGQCKAGNIDAAMGLYTEMVIKSLVPD 398 (605)
Q Consensus 325 ~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~ 398 (605)
..+......+..++.+ ..+.+.+..++........ .+......+- ......+..+.+...+......+ .+
T Consensus 209 -~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~ 284 (450)
T d1qsaa1 209 -GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QS 284 (450)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CC
T ss_pred -CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cc
Confidence 2233333333333332 3578888888888766422 2222222222 22233566788888887777663 34
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHH
Q 036303 399 VVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAA 478 (605)
Q Consensus 399 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (605)
.......+......+++..+...+..|... ..........++.++...|+.++|...|..+.. .++ |-.
T Consensus 285 ~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-------~~~---fYG 353 (450)
T d1qsaa1 285 TSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-------QRG---FYP 353 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------SCS---HHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-------CCC---hHH
Confidence 444444555566778999999998877542 223345567788999999999999999999864 233 323
Q ss_pred HHHHHHccCCH-HHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 036303 479 IIQALCYDGQI-LKASKLFSDMRSDNLRPDNC----TYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGY 553 (605)
Q Consensus 479 l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 553 (605)
.+.+- +.|.. .-.. ... ...+... .-...+..+...|....|...|..+... .+..-...++...
T Consensus 354 ~LAa~-~Lg~~~~~~~---~~~---~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA 423 (450)
T d1qsaa1 354 MVAAQ-RIGEEYELKI---DKA---PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYA 423 (450)
T ss_dssp HHHHH-HTTCCCCCCC---CCC---CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred HHHHH-HcCCCCCCCc---CCC---CccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 32221 12211 0000 000 0111100 1113345677899999999999988753 2455667788999
Q ss_pred HhcCChhHHHHHHHHHHh
Q 036303 554 QENGDLKSAFRCSEFLKE 571 (605)
Q Consensus 554 ~~~g~~~~A~~~~~~~~~ 571 (605)
.+.|.++.|+....++..
T Consensus 424 ~~~g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 424 FNNQWWDLSVQATIAGKL 441 (450)
T ss_dssp HHTTCHHHHHHHHHHTTC
T ss_pred HHCCChhHHHHHHHHHHc
Confidence 999999999998877643
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.45 E-value=0.25 Score=34.81 Aligned_cols=139 Identities=12% Similarity=-0.024 Sum_probs=81.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCH
Q 036303 410 SKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNALNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQI 489 (605)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 489 (605)
.-.|..++..++..+... +.+..-++.++.-....-+-+-..+.++.+-+-.. . ...++.
T Consensus 13 ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FD-----l------------s~C~Nl 72 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD-----L------------DKCQNL 72 (161)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC-----G------------GGCSCT
T ss_pred HHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcC-----c------------hhhhcH
Confidence 344555555555555554 44555555555544444444444444444433211 0 011222
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036303 490 LKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFL 569 (605)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 569 (605)
...+.-+-. ...++..+...++....+|+-+.-.++...+.+. -++++.+...++.+|.+.|+..+|-.++.++
T Consensus 73 k~vv~C~~~-----~n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~A 146 (161)
T d1wy6a1 73 KSVVECGVI-----NNTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 146 (161)
T ss_dssp HHHHHHHHH-----TTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----hcchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 222222211 2335556667777788888888877777776664 3677888888888899999988888888888
Q ss_pred HhcCC
Q 036303 570 KESRI 574 (605)
Q Consensus 570 ~~~~~ 574 (605)
-+.+.
T Consensus 147 Ce~G~ 151 (161)
T d1wy6a1 147 CKKGE 151 (161)
T ss_dssp HHTTC
T ss_pred HHHhH
Confidence 77654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.11 E-value=0.26 Score=35.06 Aligned_cols=27 Identities=7% Similarity=-0.041 Sum_probs=13.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 036303 475 LYAAIIQALCYDGQILKASKLFSDMRS 501 (605)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (605)
.+-.+..+|.+.|++++|.+.++++++
T Consensus 75 ~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 75 CLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 333444444455555555555555544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.83 E-value=0.69 Score=32.54 Aligned_cols=141 Identities=14% Similarity=0.097 Sum_probs=97.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036303 374 QCKAGNIDAAMGLYTEMVIKSLVPDVVVFTALIDGLSKDGNMKETLRLYKEMLEAKITPSVFTVSSLIHGLFKNGRISNA 453 (605)
Q Consensus 374 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 453 (605)
+.-.|..++..+++.+..... +..-|+.++--....-+-+.....++.+-+. .| ...+++....
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHH
Confidence 445788999999998887652 4455666665555555555555555554321 11 1234555555
Q ss_pred HHHHHHhhhccCCCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036303 454 LNFFLEKTDKTDGGYCSPNHVLYAAIIQALCYDGQILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLAD 533 (605)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 533 (605)
...+-.+ ..+....+..+..+..+|+-+.-.++++.+.+ +-.|++.....+..+|.+.|...++-+++.+
T Consensus 76 v~C~~~~---------n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ 145 (161)
T d1wy6a1 76 VECGVIN---------NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 145 (161)
T ss_dssp HHHHHHT---------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHh---------cchHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 5555433 22334456677888899999999999999776 3578899999999999999999999999999
Q ss_pred HHHCCCC
Q 036303 534 MIKMGIV 540 (605)
Q Consensus 534 ~~~~~~~ 540 (605)
+.+.|+.
T Consensus 146 ACe~G~K 152 (161)
T d1wy6a1 146 ACKKGEK 152 (161)
T ss_dssp HHHTTCH
T ss_pred HHHHhHH
Confidence 9998864
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.60 E-value=1.9 Score=28.63 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHH
Q 036303 488 QILKASKLFSDMRSDNLRPDNCTYTTMLRGLLRAKRMLDVMMLLADMIKMGIVPDAVINQVM 549 (605)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 549 (605)
+.=++.+-+..+....+.|++.+....+.+|.+.+++..|.++++-.... ..++..+|..+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yi 81 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYV 81 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHH
Confidence 44456666777777778888888888888888888888888888866532 22334455544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.64 E-value=1.5 Score=29.18 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036303 523 RMLDVMMLLADMIKMGIVPDAVINQVMVRGYQENGDLKSAFRCSEFLKESRI 574 (605)
Q Consensus 523 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 574 (605)
|.=++.+-+..+....+.|++.+..+..++|.+.+|+.-|.++++.++.+--
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~ 72 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG 72 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4446666777777888999999999999999999999999999999997653
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.56 E-value=5.1 Score=29.19 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=68.2
Q ss_pred hcCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChhHHHHHHH
Q 036303 64 EMGHIEEALWVYRKIEVLPAIQACNALLNGLIKKGKFDSVWEFYEEMVLCGLVADVVTYGVLIDCCCGQGDVMKALNLFD 143 (605)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 143 (605)
..++.+-|+++..+...+-....|..-...+...|++.+|..+-....+ |+--++.|.+.+-..-...|+..-.+.+|.
T Consensus 11 ~l~n~~la~~lA~r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~-giLRt~~Ti~rFk~~~~~pGq~spLL~YF~ 89 (157)
T d1bpoa1 11 VLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFG 89 (157)
T ss_dssp TTCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc-ccccCHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence 3466677777777776666666677777777777888887777655543 333455555555444444566666667777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036303 144 EMIDKGIEPTVVIYTILIHGLCNENKMVEAESM 176 (605)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 176 (605)
.+.+.| ..+..--..+++.-...|+.+-..++
T Consensus 90 ~Ll~~~-~LN~~ESlEl~r~vL~q~r~~lve~W 121 (157)
T d1bpoa1 90 ILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW 121 (157)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhcC-CCchHHhHHHHHHHHhcCcHHHHHHH
Confidence 766665 34554445556666666666554444
|