Citrus Sinensis ID: 036322
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | ||||||
| 255556013 | 754 | conserved hypothetical protein [Ricinus | 0.991 | 0.473 | 0.595 | 1e-106 | |
| 225470340 | 780 | PREDICTED: uncharacterized protein LOC10 | 0.983 | 0.453 | 0.580 | 1e-102 | |
| 224125478 | 610 | predicted protein [Populus trichocarpa] | 0.972 | 0.573 | 0.613 | 1e-100 | |
| 357477945 | 734 | hypothetical protein MTR_4g113740 [Medic | 0.994 | 0.487 | 0.505 | 2e-94 | |
| 296084705 | 308 | unnamed protein product [Vitis vinifera] | 0.813 | 0.951 | 0.633 | 3e-89 | |
| 356511644 | 347 | PREDICTED: uncharacterized protein LOC10 | 0.9 | 0.933 | 0.551 | 1e-86 | |
| 356563047 | 323 | PREDICTED: uncharacterized protein LOC10 | 0.819 | 0.913 | 0.580 | 5e-82 | |
| 449433865 | 255 | PREDICTED: uncharacterized protein LOC10 | 0.683 | 0.964 | 0.611 | 2e-78 | |
| 242094320 | 674 | hypothetical protein SORBIDRAFT_10g03125 | 0.675 | 0.360 | 0.531 | 6e-67 | |
| 326499564 | 688 | predicted protein [Hordeum vulgare subsp | 0.733 | 0.383 | 0.505 | 6e-66 |
| >gi|255556013|ref|XP_002519041.1| conserved hypothetical protein [Ricinus communis] gi|223541704|gb|EEF43252.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 227/381 (59%), Positives = 269/381 (70%), Gaps = 24/381 (6%)
Query: 1 METNEYSYQNKRLQFTNNHRDSVNMGHTNESETWESGDNLLDSVGFRVSWNHMEKNL--- 57
+++ EYSYQ+ RLQF +N R S M NE+E W+S +N DSV S+ H E
Sbjct: 376 IDSQEYSYQSSRLQFVDNQRVSWTMNKNNETEMWKSRENWRDSVDLNFSFKHAETEASFV 435
Query: 58 ----------VYRSSYNREKDENQIYSSMLREEKVNPEDDSHLTDHLRARESEISSSSSS 107
Y+ S NR +E++ Y S REE+ P DDS L D+ E E+ SSSSS
Sbjct: 436 QEQMLKQSSGAYKPSKNRNVNEDKGYRSQFREEE--PSDDSRLPDNQSVMEGEVGSSSSS 493
Query: 108 KFIDDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAV 167
DDV+FDRYL+EAN+L K AKEC+K DEE AE+IL+KSA+LL++A+AM+ MSLLAV
Sbjct: 494 MLADDVVFDRYLSEANNLLKQAKECIKGKHDEEHAEIILYKSAKLLAKALAMKPMSLLAV 553
Query: 168 DQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227
LGNTYL+ ELKL S +LR LL ISV+ + LKGLD Q NKDKIAS L+
Sbjct: 554 GLLGNTYLLHGELKLKISRELRTLLSRKYPISVDSRGNTLKGLDEQVPNKDKIASALIHV 613
Query: 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF---------LETAFDADKIFSA 278
CEECEELLV+AGRKYRLALSIDGNDVRALYNWGLAL F E AFDADK+F A
Sbjct: 614 CEECEELLVEAGRKYRLALSIDGNDVRALYNWGLALSFRAQLISDIGPEAAFDADKVFLA 673
Query: 279 AIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNS 338
AID FDAMM KGN+YAPDAL+ W V LQQRSRLRPRNSKEKVKLL QA+RLY+DAL+M
Sbjct: 674 AIDKFDAMMSKGNVYAPDALYRWGVVLQQRSRLRPRNSKEKVKLLMQAKRLYEDALNMEF 733
Query: 339 DNLQVREALSSCMSELNHGDF 359
DNLQVREA+SSC++ELNH F
Sbjct: 734 DNLQVREAISSCVAELNHRHF 754
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470340|ref|XP_002267812.1| PREDICTED: uncharacterized protein LOC100248155 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 219/377 (58%), Positives = 269/377 (71%), Gaps = 23/377 (6%)
Query: 1 METNEYSYQNKRLQFTNNHRDSVNMGHTNESETWESGDNLLDSVGFRVSWNHME------ 54
++ +EYSY+++RLQF N+ + S+ MGH +E ETW S ++ LDSV F S H E
Sbjct: 401 LKHDEYSYRSRRLQFMNDRQVSLKMGHHDEIETWASHESQLDSVDFSFSLKHKETKAPFG 460
Query: 55 -------KNLVYRSSYNREKDENQIYSSMLREEKVNPEDDSHLTDHLRARESEISSSSSS 107
N Y + + +K E+ Y S REE +N DDSHL H A+ESEI SSSS
Sbjct: 461 QENMLKNSNGAYMHTDSSKKSEDGSYRSHFREENLNQIDDSHLDGHQVAQESEIGSSSS- 519
Query: 108 KFIDDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAV 167
+ DD +FDRYL+EAN L K A+E ++ E AE+ L+KSA+LLSQAIAM+ MSL+AV
Sbjct: 520 RVSDDALFDRYLSEANGLLKQARESVRGRDHEGHAEIRLYKSAKLLSQAIAMKPMSLVAV 579
Query: 168 DQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227
LGNTYL+ ELKL S +LR LL D + + + + LKGLD +F +KDKI S+LVD
Sbjct: 580 GLLGNTYLLHGELKLKNSRELRTLLSRNDPLLINKWGKALKGLDDRFSSKDKIGSVLVDV 639
Query: 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF---------LETAFDADKIFSA 278
CEECEELLV+AGRKYR+ALS+DGND+RALYNWGLAL F E AFDADK+F A
Sbjct: 640 CEECEELLVEAGRKYRMALSLDGNDMRALYNWGLALSFRAQLIADIGPEAAFDADKVFMA 699
Query: 279 AIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNS 338
AID FDAMM KGN+Y PDALF W ALQQRSRLRPRNSKEKVKLLQQA+RLY+DAL M+S
Sbjct: 700 AIDKFDAMMSKGNVYTPDALFRWGAALQQRSRLRPRNSKEKVKLLQQAKRLYEDALDMDS 759
Query: 339 DNLQVREALSSCMSELN 355
DN QV+EALSSC+SEL+
Sbjct: 760 DNFQVKEALSSCISELS 776
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125478|ref|XP_002329815.1| predicted protein [Populus trichocarpa] gi|222870877|gb|EEF08008.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 230/375 (61%), Positives = 265/375 (70%), Gaps = 25/375 (6%)
Query: 5 EYSYQNKRLQFTNNHRDSVNMGHTNESETWESGDNLLDSVGFRVSWNHMEK--NLV---- 58
EY YQN RLQF NH M NE+ETW+S DNL DSV F VS ME N V
Sbjct: 235 EYRYQNNRLQFMGNHGVYWKMDQNNETETWKSQDNLFDSVDFGVSLEQMETETNFVQKQM 294
Query: 59 -------YRSSYNREKDENQIYSSMLREEKVNPEDDSHLTDH-LRARESEISSSSSSKFI 110
YRSS+ + E++ Y S L+E V +DD HL DH +SSSSSS
Sbjct: 295 YRKSSRAYRSSHTWKMSEDESYRSQLKEGWV--DDDLHLGDHQSVPDSEVVSSSSSSVVS 352
Query: 111 DDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQL 170
DDV+FDR+LTEAN+L K AKE ++ DEE E+ILHKSA+LLS+AIAM+ MSLLAV QL
Sbjct: 353 DDVVFDRHLTEANNLLKQAKEFLRGRSDEEHVEIILHKSAKLLSKAIAMKPMSLLAVGQL 412
Query: 171 GNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEE 230
GNTYL+ ELKL S +LR LL D + +LKGLD Q + KDKIAS+LV+ CEE
Sbjct: 413 GNTYLLHGELKLKISRELRTLLSRRDPFYANDHGGMLKGLDDQVIKKDKIASVLVNVCEE 472
Query: 231 CEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF---------LETAFDADKIFSAAID 281
CEELLV+AGRKYRLALSIDGNDVRALYNWGLAL F E A+DA+K+F AAID
Sbjct: 473 CEELLVEAGRKYRLALSIDGNDVRALYNWGLALSFRAQLIADIGPEAAYDAEKVFLAAID 532
Query: 282 NFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNL 341
FDAMM KGN+YAPDAL+ W V LQQRSRLRP NS+EKVKLLQQARRLY+DALHM+S+NL
Sbjct: 533 KFDAMMSKGNVYAPDALYRWGVVLQQRSRLRPTNSREKVKLLQQARRLYEDALHMDSNNL 592
Query: 342 QVREALSSCMSELNH 356
QVREAL SC SELNH
Sbjct: 593 QVREALLSCTSELNH 607
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357477945|ref|XP_003609258.1| hypothetical protein MTR_4g113740 [Medicago truncatula] gi|355510313|gb|AES91455.1| hypothetical protein MTR_4g113740 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 192/380 (50%), Positives = 256/380 (67%), Gaps = 22/380 (5%)
Query: 2 ETNEYSYQNKRLQFTNNHRDSVNMGHTNESETWESGDNLLDSVGFRVSWNHMEKNL---- 57
E EYSY+NK L+FTNNH S+ M ++ ++ WES ++ LDS +V +E
Sbjct: 355 EREEYSYRNKGLRFTNNHSISLKMDSSSVADMWESHESRLDSESIKVRMKRVESETSFLH 414
Query: 58 ---------VYRSSYNREKDENQIYSSMLREEKVNPEDDSHLTDHLRARESEISSSSSSK 108
+RSS ++ +++N + D L D L ++E ++ SS+K
Sbjct: 415 EQLLNQGQEAFRSSIDKRDSGPDRSRYEEDRDRMNYDADQLLADDLSESDNEFNAPSSTK 474
Query: 109 FIDDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVD 168
DD+MFDRYL EA DL K AKE +K +D E+AE++L+K+A +LS+A+ ++ MSLLAV
Sbjct: 475 VSDDIMFDRYLAEATDLLKQAKEFVKGTYDGEQAEIMLYKTASILSKAVDLKPMSLLAVG 534
Query: 169 QLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDAC 228
QLGNTYL+ ELKL S +LR LL S ++ RI+K L + +K++ LL+D C
Sbjct: 535 QLGNTYLLHGELKLKISRELRNLLSGSIERSSAKRSRIIKELRNKITSKEEAMQLLIDVC 594
Query: 229 EECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF---------LETAFDADKIFSAA 279
EECEELLV AGRKYRLALSID NDVRALYNWGLAL F AF+A+++F AA
Sbjct: 595 EECEELLVNAGRKYRLALSIDSNDVRALYNWGLALSFRAQLIADIGPGAAFEAERVFLAA 654
Query: 280 IDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSD 339
ID FDAM+LKGN+YAPDALF W +ALQQRSRLRP +SKEK+KLLQQA+RLY+DAL M+S+
Sbjct: 655 IDKFDAMLLKGNVYAPDALFRWGMALQQRSRLRPGSSKEKLKLLQQAKRLYEDALDMDSN 714
Query: 340 NLQVREALSSCMSELNHGDF 359
N+QV++ALS C+SELN+ F
Sbjct: 715 NIQVKDALSLCVSELNYRQF 734
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084705|emb|CBI25847.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 192/303 (63%), Positives = 228/303 (75%), Gaps = 10/303 (3%)
Query: 66 EKDENQIYSSMLREEKVNPEDDSHLTDHLRARESEISSSSSSKFIDDVMFDRYLTEANDL 125
+K E+ Y S REE +N DDSHL H A+ESEI SSSS + DD +FDRYL+EAN L
Sbjct: 7 KKSEDGSYRSHFREENLNQIDDSHLDGHQVAQESEIGSSSS-RVSDDALFDRYLSEANGL 65
Query: 126 PKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFS 185
K A+E ++ E AE+ L+KSA+LLSQAIAM+ MSL+AV LGNTYL+ ELKL S
Sbjct: 66 LKQARESVRGRDHEGHAEIRLYKSAKLLSQAIAMKPMSLVAVGLLGNTYLLHGELKLKNS 125
Query: 186 CKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLA 245
+LR LL D + + + + LKGLD +F +KDKI S+LVD CEECEELLV+AGRKYR+A
Sbjct: 126 RELRTLLSRNDPLLINKWGKALKGLDDRFSSKDKIGSVLVDVCEECEELLVEAGRKYRMA 185
Query: 246 LSIDGNDVRALYNWGLALFF---------LETAFDADKIFSAAIDNFDAMMLKGNIYAPD 296
LS+DGND+RALYNWGLAL F E AFDADK+F AAID FDAMM KGN+Y PD
Sbjct: 186 LSLDGNDMRALYNWGLALSFRAQLIADIGPEAAFDADKVFMAAIDKFDAMMSKGNVYTPD 245
Query: 297 ALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELNH 356
ALF W ALQQRSRLRPRNSKEKVKLLQQA+RLY+DAL M+SDN QV+EALSSC+SEL+
Sbjct: 246 ALFRWGAALQQRSRLRPRNSKEKVKLLQQAKRLYEDALDMDSDNFQVKEALSSCISELSF 305
Query: 357 GDF 359
F
Sbjct: 306 RRF 308
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511644|ref|XP_003524533.1| PREDICTED: uncharacterized protein LOC100776923 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 192/348 (55%), Positives = 242/348 (69%), Gaps = 24/348 (6%)
Query: 34 WESGDNLLDSVGFRVSWNHMEK-------------NLVYRSSYNREKDENQIYSSMLREE 80
WES D+L+DS F+V ME + +RSS+ +K E S +
Sbjct: 2 WESQDSLIDSESFKVRTKRMESESSFLREQLLDGGHETFRSSH--DKREGGSDRSQYNND 59
Query: 81 KVNPEDDSHLTDHLRARESEISSSSSSKFIDDVMFDRYLTEANDLPKHAKECMKSGWDEE 140
VN +D HL D L A E+E ++ SS+K DD+MFDRYL EA DL K AKE +K EE
Sbjct: 60 TVNYDDHRHLADDLSAHENEFNTPSSTKISDDMMFDRYLAEATDLLKQAKEFIKGRQGEE 119
Query: 141 RAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV 200
+AE++L++SA LLS+A+ ++ MSLLAV QLGNTYL+ ELKL S +LR LL S
Sbjct: 120 QAEIMLYRSANLLSKAVELKPMSLLAVGQLGNTYLLHGELKLKISRELRTLLSGSIQPSS 179
Query: 201 EEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWG 260
+ RILKGL + +K+++A L+D CEECEELLV+AGRKYRLALSID NDVRALYNWG
Sbjct: 180 VKHSRILKGLRNKINSKEEVAPFLIDVCEECEELLVEAGRKYRLALSIDSNDVRALYNWG 239
Query: 261 LALFF---------LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311
LAL F AF+A+++F AAID FDAM+LKGN+YAPDALF W VALQQRSRL
Sbjct: 240 LALSFRGQLIADIGPGAAFEAERVFLAAIDKFDAMLLKGNVYAPDALFRWGVALQQRSRL 299
Query: 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELNHGDF 359
RP +SKEK+KLLQQA+RLY+DAL MNS+N QV++ALSSC++ELN+ F
Sbjct: 300 RPGSSKEKLKLLQQAKRLYEDALDMNSNNGQVKDALSSCLAELNYRQF 347
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563047|ref|XP_003549777.1| PREDICTED: uncharacterized protein LOC100777889 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 310 bits (795), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 181/312 (58%), Positives = 227/312 (72%), Gaps = 17/312 (5%)
Query: 58 VYRSS-YNREKDENQIYSSMLREEKVNPEDDSHLTDHLRARESEISSSSSSKFIDDVMFD 116
+RS+ Y RE N+ S ++ VN +D+ HL D L A E+E SS+K DD+MFD
Sbjct: 19 TFRSAHYKREGGSNR---SQYNDDTVNYDDNHHLADDLSAHENE----SSTKISDDMMFD 71
Query: 117 RYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLV 176
RYL EA DL K AKE +K EE+AE++L++SA LLS+A+ ++ MSLLAV QLGNTYL+
Sbjct: 72 RYLAEATDLLKQAKEFIKGRQGEEQAEIMLYRSANLLSKAVELKPMSLLAVGQLGNTYLL 131
Query: 177 REELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLV 236
ELKL S +LR LL S + RILKGL + K+++ L+D CEECEELLV
Sbjct: 132 HGELKLKISRELRTLLSGSIQPSSVKHTRILKGLRNKVNCKEEVVPFLIDVCEECEELLV 191
Query: 237 KAGRKYRLALSIDGNDVRALYNWGLALFF---------LETAFDADKIFSAAIDNFDAMM 287
+AGRKYRLALS+D NDVRALYNWGLAL F AF+A+++F AAID FDAM+
Sbjct: 192 EAGRKYRLALSVDSNDVRALYNWGLALSFRGQLIADIGPGAAFEAERVFLAAIDKFDAML 251
Query: 288 LKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREAL 347
LKGN+YAPDALF W VALQQRSRLRP +SKEKVKLLQQA+RLY+DAL MNS+N+QV++AL
Sbjct: 252 LKGNVYAPDALFRWGVALQQRSRLRPGSSKEKVKLLQQAKRLYEDALDMNSNNVQVKDAL 311
Query: 348 SSCMSELNHGDF 359
SSC++ELN+ F
Sbjct: 312 SSCLAELNYRQF 323
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433865|ref|XP_004134717.1| PREDICTED: uncharacterized protein LOC101207805 [Cucumis sativus] gi|449479342|ref|XP_004155574.1| PREDICTED: uncharacterized LOC101207805 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 156/255 (61%), Positives = 191/255 (74%), Gaps = 9/255 (3%)
Query: 114 MFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNT 173
MF++ L EANDL K AK+ MK DEE E+IL +SA LL++A M+ MSLLAV QLGNT
Sbjct: 1 MFNKCLMEANDLLKQAKDLMKYRRDEEHVEVILCQSASLLAKATTMKPMSLLAVGQLGNT 60
Query: 174 YLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEE 233
YL+ ELKL S +LR LL + SV + +++GLD +DK+ S+L+ CEECEE
Sbjct: 61 YLLHGELKLRISRELRGLLAGKEPGSVGKWFEMVEGLDDSVTRRDKLTSILISVCEECEE 120
Query: 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFF---------LETAFDADKIFSAAIDNFD 284
LLV AGR+YR+ALSID NDVRALYNWGLAL F E AFDADK+F AAID FD
Sbjct: 121 LLVMAGRRYRMALSIDRNDVRALYNWGLALSFRAQLIADVGPEAAFDADKVFLAAIDKFD 180
Query: 285 AMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344
AMM +GN+YAP+ALF WA+ LQQRSRLRP NSKEK KLL QA+RLY+D+L+MNSDN++VR
Sbjct: 181 AMMSRGNVYAPEALFRWAMTLQQRSRLRPNNSKEKAKLLLQAKRLYEDSLNMNSDNVKVR 240
Query: 345 EALSSCMSELNHGDF 359
EALSSC+SE+ G +
Sbjct: 241 EALSSCISEIQFGQY 255
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242094320|ref|XP_002437650.1| hypothetical protein SORBIDRAFT_10g031250 [Sorghum bicolor] gi|241915873|gb|EER89017.1| hypothetical protein SORBIDRAFT_10g031250 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 135/254 (53%), Positives = 183/254 (72%), Gaps = 11/254 (4%)
Query: 115 FDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTY 174
F R + EA ++ + A+E M + DEE A+ +L+KSARLLS A+A++ SL+AV QLGNTY
Sbjct: 418 FSRNVKEAAEILRKARESMMAMADEETADALLYKSARLLSTAVALRPTSLVAVGQLGNTY 477
Query: 175 LVREELKLHFSCKLRRLLL-EGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEE 233
L+ ELKL S +LR LL G ++ E+ + +D + ++++ I+S LVD CEECE
Sbjct: 478 LLHGELKLKISRELRTLLANSGAFLNGRERVSRSRKVDRRILSRESISSALVDVCEECES 537
Query: 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFF---------LETAFDADKIFSAAIDNFD 284
LLV+AGR YR+ALSID DV+ALYNWGLAL F E A DAD+++ AAID FD
Sbjct: 538 LLVEAGRSYRMALSIDSGDVKALYNWGLALIFRAQLLADIGPEAAVDADRVYLAAIDKFD 597
Query: 285 AMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344
A++ + N YAP+AL+ W ALQQRS LRPRNS++KV+LL+QA+ L++D L++ +DN VR
Sbjct: 598 AILSRSNTYAPEALYRWGTALQQRSYLRPRNSRDKVRLLEQAKSLFEDVLYVEADNKMVR 657
Query: 345 EALSSCMSELN-HG 357
EALSSC+SELN HG
Sbjct: 658 EALSSCISELNYHG 671
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326499564|dbj|BAJ86093.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326506948|dbj|BAJ91515.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 143/283 (50%), Positives = 192/283 (67%), Gaps = 19/283 (6%)
Query: 86 DDSHLTDHLRARESEISSSSSSKFIDDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMI 145
D+ LTD + E+ ++ S D F R + EA ++ + A+ECM + DEE A+ +
Sbjct: 410 DEQPLTD-----DDEVGAAVGS---DAEEFGRNVKEAAEILRKARECMMARDDEEAADAL 461
Query: 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLL-EGDVISVEEQK 204
L++SARLLS A A++ SL+AV QLGNTYL+ ELKL S +LR LL G I+ E+
Sbjct: 462 LYRSARLLSTAAALRPTSLVAVGQLGNTYLLHGELKLKISRELRTLLANSGAYINGGERV 521
Query: 205 RILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALF 264
+ LD + +N++ I+S LV CEECE LLV+AGR YR A+SID DV+ALYNWGLAL
Sbjct: 522 SRSRKLDRRILNRENISSALVGVCEECESLLVEAGRSYRTAVSIDSGDVKALYNWGLALI 581
Query: 265 F---------LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRN 315
F E A DAD+++ AAID FDAM+ K N YAP+AL+ W ALQQRS+LR RN
Sbjct: 582 FRGQLLSDIGPEAAVDADRVYLAAIDKFDAMLSKSNTYAPEALYRWGSALQQRSQLRSRN 641
Query: 316 SKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN-HG 357
+KEK++LL+QA+ L++D L++ +N VREALSSC+SELN HG
Sbjct: 642 NKEKIRLLEQAKSLFEDVLYVEGNNKMVREALSSCISELNYHG 684
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Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | ||||||
| TAIR|locus:2165725 | 565 | AT5G41950 [Arabidopsis thalian | 0.330 | 0.210 | 0.305 | 2.5e-05 |
| TAIR|locus:2165725 AT5G41950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 130 (50.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 232 EELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDA---------DKIFSAAIDN 282
+ +L A RKY A+ + +D ALYNW AL E+A + D + A
Sbjct: 202 QRVLAFAARKYASAIERNPDDHDALYNW--ALILQESADNVSPDSVSPSKDDLLEEACKK 259
Query: 283 FD-AMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNL 341
+D A L +Y DA + WA+A+ R+++R R +KE +L +QA Y+ A+ +N ++
Sbjct: 260 YDEATRLCPTLY--DAYYNWAIAISDRAKIRGR-TKEAEELWEQAADNYEKAVQLNWNSS 316
Query: 342 QVREALSSCMSELN 355
Q + EL+
Sbjct: 317 QALNNWGLVLQELS 330
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 360 350 0.0010 116 3 11 22 0.38 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 607 (65 KB)
Total size of DFA: 246 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.18u 0.07s 30.25t Elapsed: 00:00:02
Total cpu time: 30.18u 0.07s 30.25t Elapsed: 00:00:02
Start: Sat May 11 10:28:38 2013 End: Sat May 11 10:28:40 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00010264001 | SubName- Full=Chromosome undetermined scaffold_252, whole genome shotgun sequence; (546 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 99.82 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 99.55 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.19 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.13 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.83 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.66 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.61 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.61 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.56 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.55 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.52 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.51 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.48 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.45 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.43 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.4 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.4 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.39 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.39 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.38 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.38 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.33 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.32 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.26 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.08 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.08 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 98.0 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.99 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.96 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.96 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 97.92 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.91 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 97.7 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 97.67 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.59 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.52 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.46 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.44 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.33 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 97.32 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.31 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.29 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.24 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.24 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.16 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.13 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.08 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.07 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.04 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.0 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.93 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.92 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 96.92 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 96.87 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 96.8 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.78 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.75 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.74 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.67 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.64 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 96.52 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.51 | |
| PLN02789 | 320 | farnesyltranstransferase | 96.43 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.4 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 96.26 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 96.23 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 96.19 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 96.15 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.09 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.01 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 95.8 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.68 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.65 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 95.57 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 95.44 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.34 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 95.25 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 95.07 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 95.05 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 95.02 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.97 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 94.9 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.77 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 94.74 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 94.61 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 94.55 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 94.41 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.36 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 94.3 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 94.1 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.65 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 93.5 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 92.93 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 92.65 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 92.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 92.48 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 91.57 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.18 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 90.97 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 90.88 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 90.87 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 90.76 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 90.47 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 90.4 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 90.25 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 89.44 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 89.43 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 89.29 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 89.27 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.95 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 88.61 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.4 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 88.38 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 87.69 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 87.22 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 86.8 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 86.26 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 85.96 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.59 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 85.15 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 84.97 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 83.97 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 83.94 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 83.87 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 82.78 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 82.3 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 82.18 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 81.81 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 81.33 |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=164.36 Aligned_cols=117 Identities=23% Similarity=0.328 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc---ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFF---LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~---~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
+++.|+++|.++...||.|+++|||||.||.+ -....|+.+|+++||.||++|+.+.| ..|+||++||.|+..+|.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P-~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP-NKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999 45567899999999999999999844 679999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 311 LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 311 lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
+.|+ ..++..++++|..+|++|++++|+|..-+.+|.-|..
T Consensus 85 l~~d-~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 85 LTPD-TAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred hcCC-hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 9999 7899999999999999999999999999999988854
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.6e-14 Score=126.94 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
|..|-+.++.+.+.+|.++++++|||-|||+....|
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk-------------------------------------------- 42 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFK-------------------------------------------- 42 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS--------------------------------------------
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhcc--------------------------------------------
Confidence 345778888999999999999999999999753332
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc----ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF----LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~----~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
.+.|+.+++.+|+.||..||.++|+.|+||||||+|+.. ..+..+|+.+|++|.++|++|+..-|- ..+|+=
T Consensus 43 -~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~---ne~Y~k 118 (186)
T PF06552_consen 43 -QGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPN---NELYRK 118 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT----HHHHH
T ss_pred -CcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCC---cHHHHH
Confidence 133556899999999999999999999999999999999 666789999999999999999997443 456665
Q ss_pred HHHHH
Q 036322 302 AVALQ 306 (360)
Q Consensus 302 GlALq 306 (360)
.+-+.
T Consensus 119 sLe~~ 123 (186)
T PF06552_consen 119 SLEMA 123 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-10 Score=120.50 Aligned_cols=173 Identities=19% Similarity=0.125 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHH
Q 036322 145 ILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 145 lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
=++.+++.|.+|+-++|.=++|++||||.|-+-+.---.+++-+|++.-. |-.....+++..--
T Consensus 233 ei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~A~a~gNla~iY-------------- 296 (966)
T KOG4626|consen 233 EIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR--PNHAVAHGNLACIY-------------- 296 (966)
T ss_pred hHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--CcchhhccceEEEE--------------
Confidence 36889999999999999999999999999998777766677777765433 22221222221100
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
-| .-+|..|.+-|++||++.|+=.+||-|-|+||-+-|+..+|++.|. .++.+++. -+|++||.|.+
T Consensus 297 ---ye--qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYn-------kaL~l~p~-hadam~NLgni 363 (966)
T KOG4626|consen 297 ---YE--QGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYN-------KALRLCPN-HADAMNNLGNI 363 (966)
T ss_pred ---ec--cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHH-------HHHHhCCc-cHHHHHHHHHH
Confidence 01 1367889999999999999999999999999999888777666554 55666554 37888888888
Q ss_pred HHHhhhcCCCChHHH----------------------HHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 305 LQQRSRLRPRNSKEK----------------------VKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 305 LqerA~lr~~sskEk----------------------~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
..+.-.+.+.+.-=+ +-=+..|+.+|.+||+++|...+++.-
T Consensus 364 ~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred HHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 888776543211100 112567899999999999999988753
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.4e-10 Score=117.10 Aligned_cols=175 Identities=19% Similarity=0.205 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+..|.+||.+||.++|...-|.-++||-+-+.|+|.-..++-|.++... |.-.-.|++ ++-++-
T Consensus 166 ~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsn--------------Lg~~f~ 229 (966)
T KOG4626|consen 166 LELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSN--------------LGCVFN 229 (966)
T ss_pred CcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC--Cceeeeehh--------------cchHHh
Confidence 3456677777777777777777777777777776665544444433222 211111111 111111
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcc---cc------------hhcH------------HHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFL---ET------------AFDA------------DKIFSA 278 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~---~~------------a~eA------------e~L~~a 278 (360)
..+ + +-+|..+|..|+.+||+-.+||||-|.++.+. .. ..-| .-+..-
T Consensus 230 ~~G----e-i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 230 AQG----E-IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDL 304 (966)
T ss_pred hcc----h-HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHH
Confidence 111 1 35678899999999999999999999999881 11 1112 246788
Q ss_pred HHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 279 AIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 279 A~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
||+-|++++.+.+ .=|+||+|.|+||.+.. -+.+|+++|-.||++.|+.+++.+-|-.---|-
T Consensus 305 AI~~Ykral~~~P-~F~~Ay~NlanALkd~G------------~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 305 AIDTYKRALELQP-NFPDAYNNLANALKDKG------------SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ 367 (966)
T ss_pred HHHHHHHHHhcCC-CchHHHhHHHHHHHhcc------------chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 9999999999755 45999999999998874 356789999999999999999998887655443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.8e-08 Score=83.07 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRN 315 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~s 315 (360)
.+|...|..++.++|+++.++++=|.++...|. +.+|++-|++++.+ ++..|+++++||.+|...-
T Consensus 41 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-------~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~~g------ 106 (144)
T PRK15359 41 SRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE-------YTTAINFYGHALML-DASHPEPVYQTGVCLKMMG------ 106 (144)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHcC------
Confidence 345557888899999999999998888887555 45567777777765 4456899999999877644
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 316 SKEKVKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
-...|+..|+.||.++|++++...-
T Consensus 107 ------~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 107 ------EPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred ------CHHHHHHHHHHHHHhCCCChHHHHH
Confidence 2445888889999999999877643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.7e-07 Score=76.46 Aligned_cols=67 Identities=16% Similarity=0.087 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
.+|..-|..|++++|++..+++|||.++..-|.. .+|+.-|+.++...+ ..|+++.+=|.+++.+-.
T Consensus 75 ~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~-------~eAi~~~~~Al~~~p-~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 75 TTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP-------GLAREAFQTAIKMSY-ADASWSEIRQNAQIMVDT 141 (144)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHH
Confidence 4567799999999999999999999999987774 456666666666644 458999999999877644
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.2e-06 Score=90.45 Aligned_cols=189 Identities=19% Similarity=0.167 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch--HHHHHHhhhhhhhhcchhHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV--EEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~--~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
+.+|...|.+|++++|.++.+++++|.+|+..|+...-+. .++.++... |... ..+...+.... .-.
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~-~l~~Al~~~-p~~~~~~~~~~ll~~~~---------~~~ 353 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVA-QFEKALALD-PHSSNRDKWESLLKVNR---------YWL 353 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-CCccchhHHHHHHHhhh---------HHH
Confidence 4678999999999999999999999999999988775433 344444332 2211 11111111000 000
Q ss_pred HHHhhH--HHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 224 LVDACE--ECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 224 L~~~~e--EaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
++..+. ....-+.+|.+.|+.|++++|++..|+++-|.++...+...+|.+. |+.++.+.+ ..+.++.++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~-------y~~aL~~~p-~~~~a~~~L 425 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERY-------YQQALRMDP-GNTNAVRGL 425 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCC-CCHHHHHHH
Confidence 000010 1112367788899999999999999999999988877775555555 555555423 346788877
Q ss_pred HHHHHH---------hhhcCCCCh---------------------HHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 302 AVALQQ---------RSRLRPRNS---------------------KEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 302 GlALqe---------rA~lr~~ss---------------------kEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
|..+.. ..++.+... -....-+.+|+..|++||+++|+++.+.-.|..|-
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 776532 111111100 01122357899999999999999998877776665
Q ss_pred hh
Q 036322 352 SE 353 (360)
Q Consensus 352 ~e 353 (360)
..
T Consensus 506 ~~ 507 (1157)
T PRK11447 506 RQ 507 (1157)
T ss_pred HH
Confidence 43
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-06 Score=87.25 Aligned_cols=190 Identities=16% Similarity=0.045 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhh-hhhhcchhHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGL-DYQFMNKDKIASLL 224 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~l-d~~~~~k~~~~~aL 224 (360)
+..|+..|.+|++++|+++.++.++|++|...|....-+. .++.++... |.+.........-+ ..+......+...+
T Consensus 126 ~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~-~~~~~~~~~-P~~~~a~~~~~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 126 YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAIS-LARTQAQEV-PPRGDMIATCLSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHH-HHHHHHHhC-CCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3468889999999999999999999999999888765433 233333222 21111111110000 00000000000000
Q ss_pred HHhh----H-----HHH-----HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc
Q 036322 225 VDAC----E-----ECE-----ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG 290 (360)
Q Consensus 225 ~~~~----e-----EaE-----eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~ 290 (360)
+... + .+. .-+.+|.+.|+.+++++|++..++++-|.++...|...+|. .+|..-|+.++.+.
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~---~~A~~~~~~Al~l~ 280 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK---LQAAEHWRHALQFN 280 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH---HHHHHHHHHHHhhC
Confidence 0000 0 001 12356788899999999999999999999998866544432 35666677777754
Q ss_pred CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 291 NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 291 n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
+ ..+.++++.|..|...-+ +..|+..|++|++++|+++++...|..|...
T Consensus 281 P-~~~~a~~~lg~~l~~~g~------------~~eA~~~l~~al~l~P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 281 S-DNVRIVTLYADALIRTGQ------------NEKAIPLLQQSLATHPDLPYVRAMYARALRQ 330 (656)
T ss_pred C-CCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4 468899999988776542 4566677777777788877777666655443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.6e-06 Score=84.20 Aligned_cols=176 Identities=13% Similarity=0.100 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch---HHHHHHhhhhhhhhcchhHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV---EEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~---~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
.+|...|.+|++++|....++.++|.+|+..|+...-+. .+..++.-. |... ...+.+...
T Consensus 348 ~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~-~~~~al~~~-p~~~~~~~~lg~~~~~-------------- 411 (615)
T TIGR00990 348 LEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE-DFDKALKLN-SEDPDIYYHRAQLHFI-------------- 411 (615)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhC-CCCHHHHHHHHHHHHH--------------
Confidence 367777888888888888888888888877776653222 233333221 2111 011111110
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
..-+.+|.+-|..|++++|+...++++.|.++...|.-.+|..+|..|++.+ +..|.++++.|.
T Consensus 412 --------~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~ 475 (615)
T TIGR00990 412 --------KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--------PEAPDVYNYYGE 475 (615)
T ss_pred --------cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHH
Confidence 0113445555556666666666666665555554444333333333332211 123444555444
Q ss_pred HHHHhhh-------------cCCCC----------------hHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 304 ALQQRSR-------------LRPRN----------------SKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 304 ALqerA~-------------lr~~s----------------skEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
++.+.-. +.|.. .-+...-+.+|...|++|+.++|++..+...|..|-..+
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQ 555 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 4443221 11110 001123567788899999999999988887777665443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.6e-06 Score=84.10 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH--------HHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcch
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL--------HFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNK 217 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl--------~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k 217 (360)
+.+|..+|.+|++++|.+..++.++|.+|+..+.... +....++.++.-. |..... ...
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a--~~~---------- 343 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQA--LGL---------- 343 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHH--HHH----------
Confidence 4588999999999999999999999999887665321 1122333444332 322111 000
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHH
Q 036322 218 DKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDA 297 (360)
Q Consensus 218 ~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~A 297 (360)
++.++. ...-+.+|...|.+|++++|++..++|+-|.++...|.. .+|+.-|+.++.+.+ ..|.+
T Consensus 344 --lg~~~~-----~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~-------~eAi~~~~~Al~l~P-~~~~~ 408 (553)
T PRK12370 344 --LGLINT-----IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQL-------EEALQTINECLKLDP-TRAAA 408 (553)
T ss_pred --HHHHHH-----HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHhcCC-CChhh
Confidence 111111 112256788899999999999999999999998886664 445555555555533 23445
Q ss_pred HhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccC-CCchHHHHHHHhhhh
Q 036322 298 LFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMN-SDNLQVREALSSCMS 352 (360)
Q Consensus 298 L~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLd-pd~~qa~~Al~~c~~ 352 (360)
++..+.++-.. + -+++|+..|++++..+ |+++.+..-|..|-.
T Consensus 409 ~~~~~~~~~~~-----g-------~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~ 452 (553)
T PRK12370 409 GITKLWITYYH-----T-------GIDDAIRLGDELRSQHLQDNPILLSMQVMFLS 452 (553)
T ss_pred HHHHHHHHHhc-----c-------CHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 44433332211 1 1345555666666553 666665555554443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.2e-06 Score=76.56 Aligned_cols=131 Identities=19% Similarity=0.224 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+++..|.++++.+|.+..+..++|.+|+..|+.
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~---------------------------------------------- 89 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY---------------------------------------------- 89 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH----------------------------------------------
Confidence 6777889999999999999999999888853222
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc-ccc--hhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF-LET--AFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~-~~~--a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
..|...|..|++++|++..++++.|.+|.. .+. ..+|.+++ +.++.+ +...+.++++.|.
T Consensus 90 ---------~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l-------~~al~~-dP~~~~al~~LA~ 152 (198)
T PRK10370 90 ---------DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI-------DKALAL-DANEVTALMLLAS 152 (198)
T ss_pred ---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH-------HHHHHh-CCCChhHHHHHHH
Confidence 345558999999999999999999999854 343 34455554 455554 3345899999999
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 304 ALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 304 ALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
++.++. -+++|+..|+++|.++|.+..-...| ..+..
T Consensus 153 ~~~~~g------------~~~~Ai~~~~~aL~l~~~~~~r~~~i-~~i~~ 189 (198)
T PRK10370 153 DAFMQA------------DYAQAIELWQKVLDLNSPRVNRTQLV-ESINM 189 (198)
T ss_pred HHHHcC------------CHHHHHHHHHHHHhhCCCCccHHHHH-HHHHH
Confidence 987654 46789999999999999988777666 33543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-06 Score=67.73 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=97.2
Q ss_pred HHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHH
Q 036322 151 RLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEE 230 (360)
Q Consensus 151 ~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eE 230 (360)
..|.++++++|.+..+...+|.++...|..
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~-------------------------------------------------- 33 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRY-------------------------------------------------- 33 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccH--------------------------------------------------
Confidence 468899999999999999999777743221
Q ss_pred HHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 231 CEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 231 aEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
.+|-+.|..+++++|++..++++.|..+..-+.. .+|.+-|+.++...+ ..|+.+++-|..+...-
T Consensus 34 -----~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~-------~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g- 99 (135)
T TIGR02552 34 -----DEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEY-------EEAIDAYALAAALDP-DDPRPYFHAAECLLALG- 99 (135)
T ss_pred -----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCC-CChHHHHHHHHHHHHcC-
Confidence 2333457788899999999999999888765554 445555555555433 45899999998876542
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 311 LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 311 lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
-++.|...|+.+++++|+++...+....|...|
T Consensus 100 -----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 100 -----------EPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred -----------CHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 267788899999999999999888888776654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.9e-06 Score=88.68 Aligned_cols=194 Identities=17% Similarity=0.184 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHH---HHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQ---KRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~---~r~~~~ld~~~~~k~~~~~ 222 (360)
+.+|.++|.+|++++|.+..|+.++|.+|+..|....-+. .++.++... |...... ..+... .+.++...
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~-~y~~aL~~~-p~~~~a~~~L~~l~~~-----~~~~~A~~ 439 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAER-YYQQALRMD-PGNTNAVRGLANLYRQ-----QSPEKALA 439 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhC-CCCHHHHHHHHHHHHh-----cCHHHHHH
Confidence 3468999999999999999999999999999888765433 345555433 3221111 111110 00111111
Q ss_pred HHHH--------------------hhHHH-----HHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHH
Q 036322 223 LLVD--------------------ACEEC-----EELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFS 277 (360)
Q Consensus 223 aL~~--------------------~~eEa-----EeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~ 277 (360)
.+.. ....+ ..-+.+|.+.|+.|++++|++..++|+.|.++...+...+|.++|.
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1000 00111 1345788899999999999999999999999888888777777666
Q ss_pred HHHHHHHHHHhccCCChhHHHhhHHHHHHH----------hhhcC-----------------------------CCChHH
Q 036322 278 AAIDNFDAMMLKGNIYAPDALFGWAVALQQ----------RSRLR-----------------------------PRNSKE 318 (360)
Q Consensus 278 aA~dKY~AAl~~~n~~ap~AL~NWGlALqe----------rA~lr-----------------------------~~sskE 318 (360)
.+++.. + ..|++++.-|+.+.+ +.++. .+...+
T Consensus 520 ~al~~~-------P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 520 RLAQQK-------P-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHcC-------C-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 665422 1 234555544443221 11110 011122
Q ss_pred H-----------------------HHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 319 K-----------------------VKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 319 k-----------------------~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
+ ..-.++|+..|++++.++|++++++.+|..|-..+
T Consensus 592 A~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 592 AEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 2 22356799999999999999999999888776444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-05 Score=64.86 Aligned_cols=165 Identities=18% Similarity=0.106 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.+.|.+++...|.+..+...+|.+|...|....-+. .++.++.-. |... .+. -.++..+.
T Consensus 48 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~al~~~-~~~~----~~~----------~~~~~~~~- 110 (234)
T TIGR02521 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAED-SFRRALTLN-PNNG----DVL----------NNYGTFLC- 110 (234)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhC-CCCH----HHH----------HHHHHHHH-
Confidence 357778888899999999999999999998887764322 223333222 2111 010 01122222
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhC--CCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSID--GNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~d--p~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
...-+.+|-+.|..+++.. |....++++.|.++...+...+|.++|..++... + ..+.+++.+|..
T Consensus 111 ----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~-~~~~~~~~la~~ 178 (234)
T TIGR02521 111 ----QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-------P-QRPESLLELAEL 178 (234)
T ss_pred ----HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------c-CChHHHHHHHHH
Confidence 1234677888999999854 5677899999998888888766766666665432 2 347888888887
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 305 LQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 305 LqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
+..+- -+.+|...|++++.+.|+++...-.+..|..
T Consensus 179 ~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (234)
T TIGR02521 179 YYLRG------------QYKDARAYLERYQQTYNQTAESLWLGIRIAR 214 (234)
T ss_pred HHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 66433 3578999999999999999888776655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-05 Score=74.38 Aligned_cols=164 Identities=16% Similarity=0.067 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch---HHHHHHhhhhhhhhcchhHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV---EEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~---~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
..|...|.+|++++|.++.++.++|.+|...|+...-+.. ++.++.-. |... ...+.++...
T Consensus 81 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~-~~~Al~l~-P~~~~a~~~lg~~l~~~------------- 145 (296)
T PRK11189 81 ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA-FDSVLELD-PTYNYAYLNRGIALYYG------------- 145 (296)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHhC-CCCHHHHHHHHHHHHHC-------------
Confidence 3667789999999999999999999999988887765443 33333221 2211 1112221111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCCchhh------------------------------HHhHHHhhhcccchhcHH
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGNDVRA------------------------------LYNWGLALFFLETAFDAD 273 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~A------------------------------LYNWGlAL~~~~~a~eAe 273 (360)
.-+.+|.+-|..+++++|++... .++|+++....+...++
T Consensus 146 ---------g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~- 215 (296)
T PRK11189 146 ---------GRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEE- 215 (296)
T ss_pred ---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHH-
Confidence 11233333444444444443311 12244433333332222
Q ss_pred HHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCC-CchHHHHHHH
Q 036322 274 KIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNS-DNLQVREALS 348 (360)
Q Consensus 274 ~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdp-d~~qa~~Al~ 348 (360)
..+..+.+-++....+.+ ..++||++.|.++..+- -...|+..|+.|+.++| |+.+.+-|+.
T Consensus 216 ~~~~~~~~~~~~~~~l~~-~~~ea~~~Lg~~~~~~g------------~~~~A~~~~~~Al~~~~~~~~e~~~~~~ 278 (296)
T PRK11189 216 TLMERLKAGATDNTELAE-RLCETYFYLAKYYLSLG------------DLDEAAALFKLALANNVYNFVEHRYALL 278 (296)
T ss_pred HHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 233333333322223221 23678888888876544 35678999999999996 9888888754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.4e-06 Score=89.64 Aligned_cols=176 Identities=10% Similarity=-0.070 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhh--hhhhcchhHH---
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGL--DYQFMNKDKI--- 220 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~l--d~~~~~k~~~--- 220 (360)
+..|+..|.+++...|. ..++.++|++++..|....- .+.++.++... |...+....+...+ ..+.......
T Consensus 525 ~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA-~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 525 YATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAAR-DRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred HHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHH-HHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66778888887666444 56678888888888877642 23445555443 33322222221111 0111000000
Q ss_pred -------HHHHHHhhHHH--HHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccC
Q 036322 221 -------ASLLVDACEEC--EELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGN 291 (360)
Q Consensus 221 -------~~aL~~~~eEa--EeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n 291 (360)
..+....+.-+ ..-+.+|.+.|+.|++++|++..+++|+|.+|...+...+|.. -|++++.+.|
T Consensus 602 AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~-------~l~~AL~l~P 674 (987)
T PRK09782 602 SLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSRE-------MLERAHKGLP 674 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-------HHHHHHHhCC
Confidence 00111111000 0224567778999999999999999999999999777544444 4555555534
Q ss_pred CChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 292 IYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 292 ~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
..|++++|.|.++..+-. +..|...|+.||.++|++.++.
T Consensus 675 -~~~~a~~nLA~al~~lGd------------~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 675 -DDPALIRQLAYVNQRLDD------------MAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred -CCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhcCCCCchhh
Confidence 569999999999866553 4567788999999999987665
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.3e-05 Score=78.05 Aligned_cols=164 Identities=17% Similarity=0.064 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|...+.+|++++|.++.|+..+|.+++..|+...-+ ..++.++.-. |.....+. .++.++.
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~-~~~~~Al~l~-P~~~~a~~--------------~lg~~l~ 383 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGS-LLFKQANLLS-PISADIKY--------------YYGWNLF 383 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhC-CCCHHHHH--------------HHHHHHH
Confidence 468899999999999999999999999999988866432 2344444443 33221110 1122222
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
..+ -+.+|..-|..|++++|.+..+.+..+.++...+. +.+|+.-|++++...+.+.|.++++-|.++
T Consensus 384 ~~G-----~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~-------~eeA~~~~~~~l~~~~p~~~~~~~~la~~l 451 (553)
T PRK12370 384 MAG-----QLEEALQTINECLKLDPTRAAAGITKLWITYYHTG-------IDDAIRLGDELRSQHLQDNPILLSMQVMFL 451 (553)
T ss_pred HCC-----CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC-------HHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 211 14567779999999999998887776665554443 355555566666554455689999999998
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 306 QQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
..+-+ .++|...|++++...|++..+...|..
T Consensus 452 ~~~G~------------~~eA~~~~~~~~~~~~~~~~~~~~l~~ 483 (553)
T PRK12370 452 SLKGK------------HELARKLTKEISTQEITGLIAVNLLYA 483 (553)
T ss_pred HhCCC------------HHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 76432 234555567777778887777776644
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-05 Score=81.46 Aligned_cols=176 Identities=14% Similarity=0.047 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
..|...|.++++++|.++.++.++|++|...|....-+. .++.++.-. |.....+... +.++..
T Consensus 93 ~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~-~l~~Al~l~-P~~~~a~~~l--------------a~~l~~ 156 (656)
T PRK15174 93 DAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVAD-LAEQAWLAF-SGNSQIFALH--------------LRTLVL 156 (656)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-CCcHHHHHHH--------------HHHHHH
Confidence 467788888899999999999999988888887665332 344444332 2221111111 111110
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHH----------------------------HHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKI----------------------------FSA 278 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L----------------------------~~a 278 (360)
..-+.+|...|+.++..+|++..++++++. +...+...+|..+ +.+
T Consensus 157 -----~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~e 230 (656)
T PRK15174 157 -----MDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQE 230 (656)
T ss_pred -----CCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHH
Confidence 011234444555666666666666655433 2222222222211 345
Q ss_pred HHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 279 AIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 279 A~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
|+.-|++++...+ ..|+++++.|.++..+.+.. ++ ..+|...|+.|+.++|+++.+...+......
T Consensus 231 A~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~-----eA---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 231 AIQTGESALARGL-DGAALRRSLGLAYYQSGRSR-----EA---KLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCch-----hh---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 5666666666533 56899999999988866432 21 2579999999999999999998877655443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.8e-05 Score=77.71 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL 182 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl 182 (360)
.+|++.|.+|++++|+...|++++|++|...|....
T Consensus 177 ~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 568889999999999999999999999999888653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-05 Score=87.62 Aligned_cols=215 Identities=11% Similarity=-0.018 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhcCCc--hHH-------H--HHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHH
Q 036322 113 VMFDRYLTEANDLPKHAKECMKSGWD--EER-------A--EMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELK 181 (360)
Q Consensus 113 ~~f~~~v~ea~~Llk~are~~~~~~D--e~~-------A--d~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLK 181 (360)
..+-....++.......+..+....+ ... . +.-..+|+..|.+++...|++.. ...+|.++...|+..
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~~Gr~e 526 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQVEDYA 526 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHH-HHHHHHHHHHCCCHH
Confidence 44555556666666666666654222 111 1 22345688999999999998753 333454445566655
Q ss_pred HHHHHHHHHHhccCCCcchHHH---HHHhhhhhhhhcchhHHH-----------HHHHHhhHHHH---HHHHHHHHHHHH
Q 036322 182 LHFSCKLRRLLLEGDVISVEEQ---KRILKGLDYQFMNKDKIA-----------SLLVDACEECE---ELLVKAGRKYRL 244 (360)
Q Consensus 182 l~~s~~Lr~lla~~~p~s~~~~---~r~~~~ld~~~~~k~~~~-----------~aL~~~~eEaE---eLL~eAgrKY~~ 244 (360)
.-+. .++.++... |.. ..+ +.++.... ++.....+- ...... ..+. --+.+|..-|+.
T Consensus 527 eAi~-~~rka~~~~-p~~-~a~~~la~all~~G-d~~eA~~~l~qAL~l~P~~~~l~~~L-a~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 527 TALA-AWQKISLHD-MSN-EDLLAAANTAQAAG-NGAARDRWLQQAEQRGLGDNALYWWL-HAQRYIPGQPELALNDLTR 601 (987)
T ss_pred HHHH-HHHHHhccC-CCc-HHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCccHHHHHHH-HHHHHhCCCHHHHHHHHHH
Confidence 3322 344444332 221 111 11111110 111100000 000000 1111 346788899999
Q ss_pred HhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHH
Q 036322 245 ALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQ 324 (360)
Q Consensus 245 Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~ 324 (360)
|++++|+ ..+++|-|.++...|...+|...| +.++.+ ++..|++++|+|.+|.+.- -.+
T Consensus 602 AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l-------~~AL~l-~Pd~~~a~~nLG~aL~~~G------------~~e 660 (987)
T PRK09782 602 SLNIAPS-ANAYVARATIYRQRHNVPAAVSDL-------RAALEL-EPNNSNYQAALGYALWDSG------------DIA 660 (987)
T ss_pred HHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHH-------HHHHHh-CCCCHHHHHHHHHHHHHCC------------CHH
Confidence 9999997 999999999999888765555555 455554 3356899999999998853 246
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 325 QARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 325 qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
+|+..|++||.++|+++++...|..|-..+
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 788899999999999999997777665544
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.7e-05 Score=74.90 Aligned_cols=185 Identities=21% Similarity=0.134 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHH---HHHH----------hhhhhhh
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEE---QKRI----------LKGLDYQ 213 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~---~~r~----------~~~ld~~ 213 (360)
..|+..|.+++...|.++.+.+.+|.+|+..|+...-+. .++.++... |.+... .+++ +.-+...
T Consensus 39 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~-~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~ 116 (899)
T TIGR02917 39 KAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEK-ELRKALSLG-YPKNQVLPLLARAYLLQGKFQQVLDELPGK 116 (899)
T ss_pred HhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHcC-CChhhhHHHHHHHHHHCCCHHHHHHhhccc
Confidence 356888999999999999999999999999888765433 344444333 322111 1111 1111110
Q ss_pred h-cchhHHHHHHHHhhH--HHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc
Q 036322 214 F-MNKDKIASLLVDACE--ECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG 290 (360)
Q Consensus 214 ~-~~k~~~~~aL~~~~e--EaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~ 290 (360)
. ........++...+. ....-+.+|.+.|..+++.+|++..++++-|..+...+...+|.+++.++++. .
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~ 189 (899)
T TIGR02917 117 TLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTA-------D 189 (899)
T ss_pred ccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHh-------C
Confidence 0 011111111111111 11234678899999999999999999999999888888877777777766543 2
Q ss_pred CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 291 NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 291 n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
+ ..+.+++..|..+.... -+.+|...|+.++.++|+++.+...+..|...
T Consensus 190 ~-~~~~~~~~~~~~~~~~g------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 239 (899)
T TIGR02917 190 P-GNVDALLLKGDLLLSLG------------NIELALAAYRKAIALRPNNPAVLLALATILIE 239 (899)
T ss_pred C-CChHHHHHHHHHHHhcC------------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 2 34678877776654322 24567888888888899888887776666543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.1e-06 Score=78.85 Aligned_cols=127 Identities=22% Similarity=0.219 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
.|-+-+++||+.+|++..|.--++-.|...|+.
T Consensus 53 ~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~----------------------------------------------- 85 (250)
T COG3063 53 QAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN----------------------------------------------- 85 (250)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh-----------------------------------------------
Confidence 455667899999999999887666555543332
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChh-HHHhhHHHHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAP-DALFGWAVALQ 306 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap-~AL~NWGlALq 306 (360)
+.|.+.|+.|++++|++-+.|-|.|.-||.-|. |.+|-.-|++|+..+..+.| +.|-|-|+-
T Consensus 86 --------~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~-------~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C-- 148 (250)
T COG3063 86 --------DLADESYRKALSLAPNNGDVLNNYGAFLCAQGR-------PEEAMQQFERALADPAYGEPSDTLENLGLC-- 148 (250)
T ss_pred --------hhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC-------hHHHHHHHHHHHhCCCCCCcchhhhhhHHH--
Confidence 335669999999999999999999999999665 46677777788886665544 888898875
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
.++.+ =..+|...|+.+|.+||++|-++..+.
T Consensus 149 ---al~~g-------q~~~A~~~l~raL~~dp~~~~~~l~~a 180 (250)
T COG3063 149 ---ALKAG-------QFDQAEEYLKRALELDPQFPPALLELA 180 (250)
T ss_pred ---HhhcC-------CchhHHHHHHHHHHhCcCCChHHHHHH
Confidence 33433 356788899999999999999887664
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-05 Score=74.87 Aligned_cols=34 Identities=15% Similarity=-0.085 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCc---C-ChHHHhhhhhhHHHHHHHH
Q 036322 148 KSARLLSQAIAMQH---M-SLLAVDQLGNTYLVREELK 181 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P---~-s~~Avgn~GNalL~~GeLK 181 (360)
.++..|+++|+..| . .+.++++.|++|...|...
T Consensus 44 ~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~ 81 (296)
T PRK11189 44 VILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRA 81 (296)
T ss_pred HHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHH
Confidence 45667777886444 3 3666888888777655544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.6e-06 Score=79.03 Aligned_cols=103 Identities=13% Similarity=0.134 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcC
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLR 312 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr 312 (360)
.-+..|.+.|..||+++|++..+++|-|.++...+.. .+|+.-|+.++.+.+ ..+.+|++.|.++..+-
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~-------~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg--- 84 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNF-------TEAVADANKAIELDP-SLAKAYLRKGTACMKLE--- 84 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC---
Confidence 3456788899999999999999999999999887764 555555666666533 56899999999987653
Q ss_pred CCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 313 PRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 313 ~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+.+|+..|+.||.++|+++++..-+..|...|.
T Consensus 85 ---------~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 85 ---------EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred ---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999977663
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0004 Score=67.79 Aligned_cols=198 Identities=11% Similarity=0.005 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHH---HHHHhhhhhhhhcchhHH-H
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEE---QKRILKGLDYQFMNKDKI-A 221 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~---~~r~~~~ld~~~~~k~~~-~ 221 (360)
..+|...|.+++.+.|.+..+...+++.|...|....-+. -+..+... .|..... .+.+..... ......+. .
T Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~ 727 (899)
T TIGR02917 651 YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK-IAKSLQKQ-HPKAALGFELEGDLYLRQK-DYPAAIQAYR 727 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhh-CcCChHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 4678899999999999999999999999998887653321 12222222 2322111 122211110 00000000 0
Q ss_pred ---------HHHHHhh--HHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc
Q 036322 222 ---------SLLVDAC--EECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG 290 (360)
Q Consensus 222 ---------~aL~~~~--eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~ 290 (360)
..+...+ -....-+.+|.+.|..+++.+|+++.++++.|..+...|...+|..+|..+++++
T Consensus 728 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------- 800 (899)
T TIGR02917 728 KALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA------- 800 (899)
T ss_pred HHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-------
Confidence 0000000 0000123567778888888999999999999988887777655555555554432
Q ss_pred CCChhHHHhhHHHHHHHhhh------------cCCCChH---------HHHHHHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 291 NIYAPDALFGWAVALQQRSR------------LRPRNSK---------EKVKLLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 291 n~~ap~AL~NWGlALqerA~------------lr~~ssk---------Ek~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
+ ..|.++++-|..+..+-. +.|.+.. ....-+..|...|+.||.++|+++.+...|..
T Consensus 801 p-~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 879 (899)
T TIGR02917 801 P-DNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879 (899)
T ss_pred C-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 2 235666665555443211 1111100 01112456888889999999999988887776
Q ss_pred hhhhc
Q 036322 350 CMSEL 354 (360)
Q Consensus 350 c~~el 354 (360)
|....
T Consensus 880 ~~~~~ 884 (899)
T TIGR02917 880 ALLAT 884 (899)
T ss_pred HHHHc
Confidence 65543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00027 Score=57.67 Aligned_cols=131 Identities=12% Similarity=0.078 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.+.|.+++++.|.+..++.++|.+|...|....-+. -++.++.....+ ....+. ..++.++.
T Consensus 82 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~-~~~~~~~~~~~~---~~~~~~----------~~l~~~~~- 146 (234)
T TIGR02521 82 EKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ-QFEQAIEDPLYP---QPARSL----------ENAGLCAL- 146 (234)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHH-HHHHHHhccccc---cchHHH----------HHHHHHHH-
Confidence 468889999999999999999999999999887765432 223333221100 000000 01111111
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
...-+.+|.+.|..++..+|++..+++++|.++...+...+|..++.++.+. .+ ..|..+...+..
T Consensus 147 ----~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~-~~~~~~~~~~~~ 212 (234)
T TIGR02521 147 ----KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT-------YN-QTAESLWLGIRI 212 (234)
T ss_pred ----HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CC-CCHHHHHHHHHH
Confidence 1123577888999999999999999999999988888876676666655443 22 346777644443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0009 Score=61.92 Aligned_cols=117 Identities=15% Similarity=0.060 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|...|.++++.+|.+..++..+|+.|...|....-+. .++.++... +........+.. .++..+..
T Consensus 52 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~~l~~~-~~~~~~~~~~~~----------~La~~~~~ 119 (389)
T PRK11788 52 DKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIR-IHQNLLSRP-DLTREQRLLALQ----------ELGQDYLK 119 (389)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHH-HHHHHhcCC-CCCHHHHHHHHH----------HHHHHHHH
Confidence 358899999999999999999999999998887764322 334444421 111111111111 12222221
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAI 280 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~ 280 (360)
. .-+..|-+.|..+++.+|.+..++.+-+.++...+.-.+|..+|..++
T Consensus 120 ~-----g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 120 A-----GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE 168 (389)
T ss_pred C-----CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 1 124556666777777788888888877777766655555554444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00011 Score=71.12 Aligned_cols=117 Identities=16% Similarity=0.073 Sum_probs=85.1
Q ss_pred HhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchH
Q 036322 122 ANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVE 201 (360)
Q Consensus 122 a~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~ 201 (360)
+.+|+++|.+....++ +..|+.+|.+||+++|.++.+++++|.+|+..|..
T Consensus 2 ~~~l~~~a~~a~~~~~--------~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~--------------------- 52 (356)
T PLN03088 2 AKDLEDKAKEAFVDDD--------FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNF--------------------- 52 (356)
T ss_pred cHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---------------------
Confidence 3457777777766553 45788999999999999999999999888864322
Q ss_pred HHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHH
Q 036322 202 EQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAID 281 (360)
Q Consensus 202 ~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~d 281 (360)
.+|..-|..|+.++|+...++++-|+++...|. |.+|+.
T Consensus 53 ----------------------------------~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~-------~~eA~~ 91 (356)
T PLN03088 53 ----------------------------------TEAVADANKAIELDPSLAKAYLRKGTACMKLEE-------YQTAKA 91 (356)
T ss_pred ----------------------------------HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC-------HHHHHH
Confidence 334456788899999999999999998887666 455666
Q ss_pred HHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 282 NFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 282 KY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
-|++++.+.+ ..+++.+..+.....+.
T Consensus 92 ~~~~al~l~P-~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 92 ALEKGASLAP-GDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHH
Confidence 6666666533 34676666666655553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00035 Score=74.32 Aligned_cols=177 Identities=13% Similarity=0.042 Sum_probs=113.2
Q ss_pred HhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchH
Q 036322 122 ANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVE 201 (360)
Q Consensus 122 a~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~ 201 (360)
+..+++|++|.++.-.-.--++..|.++ ..-+..-|.+.+|+.+||-++..+|++-- -++-|++++.-. |....
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~La~i~~~~g~~~e-a~~~l~~~~~~~-Pd~~~ 121 (694)
T PRK15179 48 GRELLQQARQVLERHAAVHKPAAALPEL----LDYVRRYPHTELFQVLVARALEAAHRSDE-GLAVWRGIHQRF-PDSSE 121 (694)
T ss_pred HHHHHHHHHHHHHHhhhhcchHhhHHHH----HHHHHhccccHHHHHHHHHHHHHcCCcHH-HHHHHHHHHhhC-CCcHH
Confidence 3788889988876543332222222221 12233368889999999998888877642 222345555433 43332
Q ss_pred HHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHH
Q 036322 202 EQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAID 281 (360)
Q Consensus 202 ~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~d 281 (360)
.+... +.+|.. +.=+.+|..-++++++.+|+...++++=|.+|..-|.-. +|++
T Consensus 122 a~~~~--------------a~~L~~-----~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~-------~A~~ 175 (694)
T PRK15179 122 AFILM--------------LRGVKR-----QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSE-------QADA 175 (694)
T ss_pred HHHHH--------------HHHHHH-----hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchH-------HHHH
Confidence 21111 111111 122455666888999999999999999999999988754 4555
Q ss_pred HHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHH
Q 036322 282 NFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQV 343 (360)
Q Consensus 282 KY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa 343 (360)
=|+.++. +++..|+|+.+||.+|..+-+ ...|+..|++||.+..+..-.
T Consensus 176 ~y~~~~~-~~p~~~~~~~~~a~~l~~~G~------------~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 176 CFERLSR-QHPEFENGYVGWAQSLTRRGA------------LWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHh-cCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhhCcchHH
Confidence 5555555 455679999999999877653 345777888888887776643
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.7e-05 Score=56.95 Aligned_cols=97 Identities=22% Similarity=0.210 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhhhCCCc---hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGND---VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d---~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
+.+|.+.|..+++.+|++ ..+++++|.++...+...+|..+|..+...|- .+...|.++++.|.++...
T Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~~~~~~~~~--- 89 (119)
T TIGR02795 18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP-----KSPKAPDALLKLGMSLQEL--- 89 (119)
T ss_pred HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC-----CCCcccHHHHHHHHHHHHh---
Confidence 456777888888888876 57999999999988877777777777766552 2334589999999997643
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
.-..+|...|+.++...|+++.+..|+.
T Consensus 90 ---------~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 90 ---------GDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred ---------CChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 2457788899999999999999998853
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00016 Score=61.29 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhhCCCc---hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGND---VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d---~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
+.+|..-|+.|+.+.|+. ..+++|.|+++...+...+|.+.|.. ++.+.+ ..+.++++.|..+..++++
T Consensus 51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~-------Al~~~~-~~~~~~~~la~i~~~~~~~ 122 (168)
T CHL00033 51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ-------ALERNP-FLPQALNNMAVICHYRGEQ 122 (168)
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH-------HHHhCc-CcHHHHHHHHHHHHHhhHH
Confidence 567777888998886653 35999999999987776555555544 444433 3478999999999988742
Q ss_pred --CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 312 --RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 312 --r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
.-+...++...+.+|...|++++.++|++-.-..-.-.|+.+
T Consensus 123 ~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 123 AIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 333467888999999999999999999877666555566544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00098 Score=61.68 Aligned_cols=179 Identities=18% Similarity=0.090 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchH-HHHHHhhhhhhhhcchhHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVE-EQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~-~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
+.+|.+.|.++++.+|.+..++.+++++|...|+...-+. .++.++... |.... ....... .++..+
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~-~~~~~~~~~~~~~----------~la~~~ 190 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAID-VAERLEKLG-GDSLRVEIAHFYC----------ELAQQA 190 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHH-HHHHHHHhc-CCcchHHHHHHHH----------HHHHHH
Confidence 3467788899999999999999999999999888764332 233333322 21110 0000000 011111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
.. ..-+.+|.+-|..+++++|+...+++.-|.++...+...+|.++|.++.++. +.+.+.+++..|.+
T Consensus 191 ~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~~l~~~ 258 (389)
T PRK11788 191 LA-----RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD-------PEYLSEVLPKLMEC 258 (389)
T ss_pred Hh-----CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------hhhHHHHHHHHHHH
Confidence 10 1234667777888888899999999998888888777777777777766531 11223333343333
Q ss_pred HHHhhh-------------cCCCCh--------HHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 305 LQQRSR-------------LRPRNS--------KEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 305 LqerA~-------------lr~~ss--------kEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
+..... +.|... -.+..-+.+|...|++++..+|+++....-+.
T Consensus 259 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 259 YQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 322211 122211 01112255788888888888888876554333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=9.2e-05 Score=78.65 Aligned_cols=116 Identities=10% Similarity=-0.004 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|...+..+++++|++..|..+++++|...+++-.- ..+.+.+|+.. |.+... .-..+.+|++
T Consensus 103 ~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA-~~~~~~~l~~~-p~~~~~--------------~~~~a~~l~~ 166 (694)
T PRK15179 103 DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAG-RAEIELYFSGG-SSSARE--------------ILLEAKSWDE 166 (694)
T ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHH-HHHHHHHhhcC-CCCHHH--------------HHHHHHHHHH
Confidence 4577899999999999999999999999987665532 22446666554 544311 1123444554
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
.++ +.+|..-|+.++..+|+++.|+++||.+|...|...+|...|.+|++-+
T Consensus 167 ~g~-----~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 167 IGQ-----SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred hcc-----hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 331 2445668999999999999999999999999999999999999997655
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00082 Score=60.93 Aligned_cols=100 Identities=24% Similarity=0.190 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
..+|.+-|+.|++++|++.+++.+++..|.+.|...+ ..+++++|.+... ..|..+...|.++..+..
T Consensus 162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~----~~~~l~~~~~~~~----~~~~~~~~la~~~~~lg~---- 229 (280)
T PF13429_consen 162 PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDE----AREALKRLLKAAP----DDPDLWDALAAAYLQLGR---- 229 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHH----HHHHHHHHHHH-H----TSCCHCHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHH----HHHHHHHHHHHCc----CHHHHHHHHHHHhccccc----
Confidence 3667789999999999999999999999988666544 4566677765542 236777778888776652
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
-++|...|+.++..+|++|.++..+..+....
T Consensus 230 --------~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 230 --------YEEALEYLEKALKLNPDDPLWLLAYADALEQA 261 (280)
T ss_dssp --------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--
T ss_pred --------cccccccccccccccccccccccccccccccc
Confidence 35789999999999999999999988776544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.002 Score=67.99 Aligned_cols=98 Identities=13% Similarity=-0.038 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|+++|.++++++|.++.+...+|.+++..|....-+ ..|+.++... |.... +- .++.++.
T Consensus 65 ~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~-~~l~~~l~~~-P~~~~-~~--------------~la~~l~ 127 (765)
T PRK10049 65 WQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEAL-VKAKQLVSGA-PDKAN-LL--------------ALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhC-CCCHH-HH--------------HHHHHHH
Confidence 457899999999999999999999999999887776432 3455555442 43321 11 1111111
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF 265 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~ 265 (360)
...-+.+|...|..+++++|++..+++++|.++..
T Consensus 128 -----~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 128 -----RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred -----HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 12334678889999999999999999999998865
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0013 Score=56.25 Aligned_cols=101 Identities=21% Similarity=0.257 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhhhCCCc---hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc-
Q 036322 236 VKAGRKYRLALSIDGND---VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL- 311 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d---~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l- 311 (360)
.+|...|..|+++.|+. ..+++|.|.++...|.-.+|...|.+| +...+ ..+.++++.|.++......
T Consensus 52 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~p-~~~~~~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 52 AEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA-------LELNP-KQPSALNNIAVIYHKRGEKA 123 (172)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCc-ccHHHHHHHHHHHHHcCChH
Confidence 45667788888777654 468999999998877755555555544 44323 3489999999999887653
Q ss_pred -CCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 312 -RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 312 -r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
..+...++...+.+|...|+.++.++|++-+..
T Consensus 124 ~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~ 157 (172)
T PRK02603 124 EEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEA 157 (172)
T ss_pred hHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHH
Confidence 122467888899999999999999999985433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.011 Score=57.39 Aligned_cols=161 Identities=12% Similarity=0.055 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHH---HHHhc-cCCCcchHH-HHHHhhhhhhhhcchhHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKL---RRLLL-EGDVISVEE-QKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~L---r~lla-~~~p~s~~~-~~r~~~~ld~~~~~k~~~~~ 222 (360)
+|..++.++|+++|++..|...-|.+|...|. .+..+| ..++. +...+.+-. ++.++..+..
T Consensus 55 rAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~---~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~---------- 121 (320)
T PLN02789 55 RALDLTADVIRLNPGNYTVWHFRRLCLEALDA---DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP---------- 121 (320)
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHcch---hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc----------
Confidence 67888999999999999999999998887652 222333 23332 222221211 2223332210
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHH
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWA 302 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWG 302 (360)
..+.++-.-+..++++||..+.|.++=|.+|..-+ .|.+|++=|+.++.. ++..+.|+++=|
T Consensus 122 ----------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~-------~~~eeL~~~~~~I~~-d~~N~sAW~~R~ 183 (320)
T PLN02789 122 ----------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG-------GWEDELEYCHQLLEE-DVRNNSAWNQRY 183 (320)
T ss_pred ----------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHH-CCCchhHHHHHH
Confidence 11223445577999999999999999999888743 388999999999986 556689999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 303 VALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 303 lALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
..+..+-.+.+. + ..+..++.+..++|.++|+|..+-
T Consensus 184 ~vl~~~~~l~~~---~--~~~e~el~y~~~aI~~~P~N~SaW 220 (320)
T PLN02789 184 FVITRSPLLGGL---E--AMRDSELKYTIDAILANPRNESPW 220 (320)
T ss_pred HHHHhccccccc---c--ccHHHHHHHHHHHHHhCCCCcCHH
Confidence 998764222111 1 245567777888888888887664
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=70.20 Aligned_cols=147 Identities=23% Similarity=0.231 Sum_probs=104.2
Q ss_pred HHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHH
Q 036322 157 IAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLV 236 (360)
Q Consensus 157 l~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~ 236 (360)
+..+|.+|+..--+||.|.+.++=...+-.-.|+.- || -+..++-.|.++=--.-+=+.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-----------------ld----p~faYayTLlGhE~~~~ee~d 472 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ-----------------LD----PRFAYAYTLLGHESIATEEFD 472 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc-----------------cC----CccchhhhhcCChhhhhHHHH
Confidence 466888888888889988876554433333222211 11 122345555544333344567
Q ss_pred HHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCCh
Q 036322 237 KAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNS 316 (360)
Q Consensus 237 eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ss 316 (360)
-|.+.||.||.+||..+.|.||-|.+-.-.+- |+.|-=-|..|+.+ |+..-..++-.|..+.++
T Consensus 473 ~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek-------~e~Ae~~fqkA~~I-NP~nsvi~~~~g~~~~~~-------- 536 (638)
T KOG1126|consen 473 KAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK-------LEFAEFHFQKAVEI-NPSNSVILCHIGRIQHQL-------- 536 (638)
T ss_pred hHHHHHHhhhcCCchhhHHHHhhhhheeccch-------hhHHHHHHHhhhcC-CccchhHHhhhhHHHHHh--------
Confidence 79999999999999999999999988766333 46777788888987 545678888888886544
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 317 KEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 317 kEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
+.-.+|.+.|++|+.|||-+|-.+
T Consensus 537 ----k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 537 ----KRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred ----hhhhHHHHHHHHHHhcCCCCchhH
Confidence 456789999999999999998643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0034 Score=57.56 Aligned_cols=161 Identities=16% Similarity=-0.025 Sum_probs=87.3
Q ss_pred cCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHH-HHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHH
Q 036322 159 MQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEE-QKRILKGLDYQFMNKDKIASLLVDACEECEELLVK 237 (360)
Q Consensus 159 ~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~-~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~e 237 (360)
.+|+...++-.+|..|...|.........++..-.. |...+. ....++++-. ...+ -+.+
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~a~~~-------------~~~g----~~~~ 61 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL--AARATERERAHVEALSA-------------WIAG----DLPK 61 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh--ccCCCHHHHHHHHHHHH-------------HHcC----CHHH
Confidence 379999999999988887665444322211111111 111111 1112222211 1111 1245
Q ss_pred HHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChH
Q 036322 238 AGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSK 317 (360)
Q Consensus 238 AgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ssk 317 (360)
|.+.|..+++.+|++..++++ ++++...+....+.....+++++ ... .+...+.++.+.|..+...-
T Consensus 62 A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~---~~~-~~~~~~~~~~~~a~~~~~~G-------- 128 (355)
T cd05804 62 ALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL---WAP-ENPDYWYLLGMLAFGLEEAG-------- 128 (355)
T ss_pred HHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc---cCc-CCCCcHHHHHHHHHHHHHcC--------
Confidence 667788889999999988887 66665533333333334444443 111 12222445555555543322
Q ss_pred HHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 318 EKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 318 Ek~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
.+.+|...|++++.++|+++.+...+..+.-+.+
T Consensus 129 ----~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 129 ----QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred ----CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 3456777888888888888887777766665544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00077 Score=48.80 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=54.2
Q ss_pred chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 036322 252 DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQ 331 (360)
Q Consensus 252 d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye 331 (360)
+..++++.|..+...+. |.+|+.-|+.++.+.+ ..+.++++.|+++..+. +-+.+|+..|+
T Consensus 2 ~a~~~~~~g~~~~~~~~-------~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~-----------~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGD-------YEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLG-----------KDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTT-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhC-----------ccHHHHHHHHH
Confidence 45678888888887655 6777777887777644 56999999999987765 15778999999
Q ss_pred HhhccCC
Q 036322 332 DALHMNS 338 (360)
Q Consensus 332 ~ALrLdp 338 (360)
.||.+||
T Consensus 63 ~al~l~P 69 (69)
T PF13414_consen 63 KALKLDP 69 (69)
T ss_dssp HHHHHST
T ss_pred HHHHcCc
Confidence 9999998
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0072 Score=62.33 Aligned_cols=129 Identities=11% Similarity=0.006 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+..|..+|++|++++|+...|+.-++-+|..+.. . .|..
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~------------~---~~~~-------------------------- 396 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHS------------Q---QPLD-------------------------- 396 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh------------c---CCcc--------------------------
Confidence 4579999999999999999999888866654211 0 0100
Q ss_pred HhhHHHHHHHHHHHHHHHHHhh--hCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 226 DACEECEELLVKAGRKYRLALS--IDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~--~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
+.-+..|.+..++|+. .+|.+..++.-.|+.....+. +.+|..-|++|+.+.+ + ..+|+.-|.
T Consensus 397 ------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~-------~~~A~~~l~rAl~L~p-s-~~a~~~lG~ 461 (517)
T PRK10153 397 ------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK-------TDEAYQAINKAIDLEM-S-WLNYVLLGK 461 (517)
T ss_pred ------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCC-C-HHHHHHHHH
Confidence 0011222222334444 467676666666665443433 4667777777777633 2 567777676
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchH
Q 036322 304 ALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQ 342 (360)
Q Consensus 304 ALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~q 342 (360)
++-... -.++|+..|+.|++|+|.+|.
T Consensus 462 ~~~~~G------------~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 462 VYELKG------------DNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHcC------------CHHHHHHHHHHHHhcCCCCch
Confidence 643222 345688999999999999874
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0085 Score=63.33 Aligned_cols=129 Identities=10% Similarity=0.014 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
+|++.|.+++..+|.+..++-++|.++...|.... ....++.++... |.....+ . .++.+++.
T Consensus 33 ~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~-A~~~~~~al~~~-P~~~~a~----~----------~la~~l~~- 95 (765)
T PRK10049 33 EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQN-SLTLWQKALSLE-PQNDDYQ----R----------GLILTLAD- 95 (765)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC-CCCHHHH----H----------HHHHHHHH-
Confidence 34478889988889999999999999999888774 333456666554 4332111 1 12222221
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
..-+.+|...++.++..+|++.. ++.-|.++...+...+|...|.+|++ +.+ ..+++++.+|.++.
T Consensus 96 ----~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~-------~~P-~~~~~~~~la~~l~ 161 (765)
T PRK10049 96 ----AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP-------RAP-QTQQYPTEYVQALR 161 (765)
T ss_pred ----CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH-------hCC-CCHHHHHHHHHHHH
Confidence 13345677788899999999999 99999999887776666555555544 323 45888888888775
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.015 Score=50.90 Aligned_cols=145 Identities=11% Similarity=0.015 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHcCcCCh---HHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchH-HHHHHhhhhhhhhcchhHHHH
Q 036322 147 HKSARLLSQAIAMQHMSL---LAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVE-EQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~---~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~-~~~r~~~~ld~~~~~k~~~~~ 222 (360)
..|+..|.+++.+.|.++ .|.+++|++|...|+...-+. .+..++... |.+.. .......| .
T Consensus 50 ~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~-~~~~~l~~~-p~~~~~~~a~~~~g------------~ 115 (235)
T TIGR03302 50 TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIA-AADRFIRLH-PNHPDADYAYYLRG------------L 115 (235)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHC-cCCCchHHHHHHHH------------H
Confidence 356778999999999987 688999999999887775433 234444332 21110 00001111 1
Q ss_pred HHHHh---hHHHHHHHHHHHHHHHHHhhhCCCchhh---H--------------HhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 223 LLVDA---CEECEELLVKAGRKYRLALSIDGNDVRA---L--------------YNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 223 aL~~~---~eEaEeLL~eAgrKY~~Al~~dp~d~~A---L--------------YNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
..... +..-..-+..|.+.|..++..+|+...+ + +++|......|...+|...|..+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 116 SNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11100 0000134677888899999999987544 2 23333333345544444444444444
Q ss_pred HHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 283 FDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 283 Y~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
|. ...+.++|+++-|.++..+..
T Consensus 196 ~p-----~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 196 YP-----DTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred CC-----CCcchHHHHHHHHHHHHHcCC
Confidence 32 123457999999998776553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0045 Score=49.36 Aligned_cols=97 Identities=19% Similarity=0.260 Sum_probs=74.7
Q ss_pred HHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHH
Q 036322 239 GRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKE 318 (360)
Q Consensus 239 grKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskE 318 (360)
|.-|..+++.+|++..++++=|..+...+...+|..+ |+.++...+ ..|.++++.|..+...-
T Consensus 3 ~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~p-~~~~~~~~la~~~~~~~--------- 65 (135)
T TIGR02552 3 GATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKL-------FQLLAAYDP-YNSRYWLGLAACCQMLK--------- 65 (135)
T ss_pred chhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHH-------HHHHHHhCC-CcHHHHHHHHHHHHHHH---------
Confidence 4578999999999999999888888776665555444 555555434 45899999998865442
Q ss_pred HHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 319 KVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 319 k~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+.+|+..|+.++.++|+++++.--+..|-..+.
T Consensus 66 ---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 66 ---EYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred ---HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 4678999999999999999999888887765543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0041 Score=55.73 Aligned_cols=102 Identities=10% Similarity=0.071 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRN 315 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~s 315 (360)
.++...|+.++..+|++..+.++=|..+...+.. ..|++-|+.++.+.+ ..+++++++|.+|-.... .
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~-------~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g---~- 123 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY-------DNALLAYRQALQLRG-ENAELYAALATVLYYQAG---Q- 123 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcC---C-
Confidence 4556689999999999999999999888776664 556666667777644 569999999998743321 0
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 316 SKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
....+|...|++|++++|+++.++--|..+--++
T Consensus 124 -----~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 124 -----HMTPQTREMIDKALALDANEVTALMLLASDAFMQ 157 (198)
T ss_pred -----CCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Confidence 0246788999999999999999988777665543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0017 Score=58.52 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
|.+|.+-|+..+.+||..++-+||+|.+... -.-|.+||+=|..+..+. ++.|.+++|-|..+-.+-.
T Consensus 51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-------~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~---- 118 (157)
T PRK15363 51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQA-------QKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN---- 118 (157)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC----
Confidence 5678888999999999999999999988874 555888999998887764 4679999999988654432
Q ss_pred ChHHHHHHHHHHHHHHHHhhccC---CCchHHHHHHHhhhhhc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMN---SDNLQVREALSSCMSEL 354 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLd---pd~~qa~~Al~~c~~el 354 (360)
...|...|+.||.+- |.+.+.++=-.....-|
T Consensus 119 --------~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 119 --------VCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred --------HHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHh
Confidence 356889999998876 55555555444444433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00027 Score=47.77 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=28.1
Q ss_pred HHHHHHHcCcCChHHHhhhhhhHHHHHHHHH
Q 036322 152 LLSQAIAMQHMSLLAVDQLGNTYLVREELKL 182 (360)
Q Consensus 152 ~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl 182 (360)
+|.+||+++|.++.|++|||++|+..|+...
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~ 31 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEE 31 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHh
Confidence 5899999999999999999999999887653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.018 Score=52.92 Aligned_cols=116 Identities=16% Similarity=-0.023 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHH--hccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRL--LLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~l--la~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
.|.+.+.++++..|.+..++.+ +.++...|....+.....+.+ .....|..... .. .++.
T Consensus 61 ~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~------------~~a~--- 122 (355)
T cd05804 61 KALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYL--LG------------MLAF--- 122 (355)
T ss_pred HHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHH--HH------------HHHH---
Confidence 5688899999999999988887 766666665433322211111 11111211100 00 0011
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
+-...--+.+|.+.|+.+++++|++.-++++.|.++...+...+|..++..+.+-.
T Consensus 123 --~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 123 --GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred --HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 11111225778889999999999999999999999988888777777777665543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0055 Score=60.49 Aligned_cols=170 Identities=18% Similarity=0.157 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHH
Q 036322 144 MILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 144 ~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
.-|.-+++|++.++..+|++... ..|++++.-=+.+ .+ .|......+ .-+++.+++ |. .+.-
T Consensus 29 esleva~qc~e~~f~~~~~~~~~--~~~~~~l~~~~~~-----------~~-~~~~~~~~~-e~~~~AE~L--K~-eGN~ 90 (304)
T KOG0553|consen 29 ESLEVAIQCLEAAFGFRRDDVDR--AEGTTLLDSFESA-----------ER-HPVEILTPE-EDKALAESL--KN-EGNK 90 (304)
T ss_pred hHHHHhHHHHHHHhCcchhhccc--cccccHHHHHHHh-----------cc-CcccccChH-hHHHHHHHH--HH-HHHH
Confidence 35678999999999998876542 3345444311111 01 111000000 122222222 11 0111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
+ -.+..|.+|-.+|-.||.++|++.==|-|=+.|++.-|- |..|++--+.++.+ +.+.-.||-+.|+
T Consensus 91 ~-----m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~-------~~~AVkDce~Al~i-Dp~yskay~RLG~ 157 (304)
T KOG0553|consen 91 L-----MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE-------YEDAVKDCESALSI-DPHYSKAYGRLGL 157 (304)
T ss_pred H-----HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc-------hHHHHHHHHHHHhc-ChHHHHHHHHHHH
Confidence 1 124789999999999999999999999999999887442 45566666677776 4444699999999
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhccc
Q 036322 304 ALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELNH 356 (360)
Q Consensus 304 ALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~~ 356 (360)
|+..+-+ .+.|++.|.+||.|+|+++..+..|.--.-.|+.
T Consensus 158 A~~~~gk------------~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 158 AYLALGK------------YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHccCc------------HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9876653 3457888999999999999999998866555543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0055 Score=46.77 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhhCCCc---hhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 236 VKAGRKYRLALSIDGND---VRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d---~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
.+|.+.|..++..+|+. ..++++.|.++...+...+|.+++.+++++|
T Consensus 56 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 56 ADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 44556777788887774 6789999999888888888888888888876
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0079 Score=52.62 Aligned_cols=105 Identities=10% Similarity=-0.030 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhhhCCCch---hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGNDV---RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~---~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
+..|...|..++...|++. +|+|+=|.++...+...+|...|..++++|. .++..+.+++.-|..+.+....
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~a~~~~g~~~~~~~~~ 123 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-----NHPDADYAYYLRGLSNYNQIDR 123 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-----CCCchHHHHHHHHHHHHHhccc
Confidence 5677889999999999876 6888888888877776666666666665553 2344566899999988765211
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
......-..+|+..|+.++..+|+++.+..++.
T Consensus 124 ----~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 124 ----VDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred ----ccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 112234588999999999999999988776654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0049 Score=64.36 Aligned_cols=87 Identities=25% Similarity=0.339 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhc------------------ccch---------hcHHHHHHHHHHHHHHHHh
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFF------------------LETA---------FDADKIFSAAIDNFDAMML 288 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~------------------~~~a---------~eAe~L~~aA~dKY~AAl~ 288 (360)
..|+..||.|+.+||.|++|-||-|=|-.- |-+. .+.---..+||+=|..++.
T Consensus 381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 467889999999999999999999865433 2221 1111224679999999888
Q ss_pred ccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhc
Q 036322 289 KGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALH 335 (360)
Q Consensus 289 ~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALr 335 (360)
.+++. ..||+..|-...+ ..-+.+|+.+|++-|.
T Consensus 461 ~~dte-~~~l~~LakLye~------------l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 461 LGDTE-GSALVRLAKLYEE------------LKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccccc-hHHHHHHHHHHHH------------HHhHHHHHHHHHHHHH
Confidence 87763 5677776666544 4456667777777665
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.012 Score=39.79 Aligned_cols=80 Identities=23% Similarity=0.307 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|.+.|.+++...|.++.+..++|++|...|..
T Consensus 16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 50 (100)
T cd00189 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY--------------------------------------------- 50 (100)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 45677778888888888887777777776653322
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAI 280 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~ 280 (360)
..|.+.|..++.+.|.+..+++++|.++...+....|...+..++
T Consensus 51 ----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 51 ----------EEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred ----------HHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 233345666666777777777777777766555555555554443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.015 Score=52.51 Aligned_cols=28 Identities=18% Similarity=0.020 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhCCCchhhHHhHHHhhhc
Q 036322 238 AGRKYRLALSIDGNDVRALYNWGLALFF 265 (360)
Q Consensus 238 AgrKY~~Al~~dp~d~~ALYNWGlAL~~ 265 (360)
|...|..|+.++|+|+++++|=|.++-.
T Consensus 88 AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 88 AIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 4444555555555555555555544443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0065 Score=55.13 Aligned_cols=115 Identities=17% Similarity=0.070 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.++|.+|++++|+++.+...++.+|...|.-+. .-..|..+.... |.+.. + -..++.+...
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~-~~~~l~~~~~~~-~~~~~------------~--~~~la~~~~~ 226 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDMGDYDE-AREALKRLLKAA-PDDPD------------L--WDALAAAYLQ 226 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHH-HHHHHHHHHHH--HTSCC------------H--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHH-HHHHHHHHHHHC-cCHHH------------H--HHHHHHHhcc
Confidence 578999999999999999999999999998776553 111222222221 11100 0 1122333332
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
. .-..+|-.-|+.++..+|+|+..+.+-|-+|...|...+|.++..+|..+
T Consensus 227 l-----g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 227 L-----GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp H-----T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred c-----cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 12467778899999999999999999999999999999999988887654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0025 Score=67.13 Aligned_cols=45 Identities=29% Similarity=0.296 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHH
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAI 280 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~ 280 (360)
++|...|++|+++.|+-+++=||=||.-+--|.=+||-+-|..|+
T Consensus 481 ~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 481 EEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 677889999999999999999999999888777555555555554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.25 Score=52.31 Aligned_cols=101 Identities=21% Similarity=0.188 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
=+..|.+.|-.||.++|+|+++|-|=++++.--+....|-+=.+ .++++ +...+.+|.+=|.+|.
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~-------~~ieL-~p~~~kgy~RKg~al~------- 437 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAK-------KCIEL-DPNFIKAYLRKGAALR------- 437 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHH-------HHHhc-CchHHHHHHHHHHHHH-------
Confidence 36789999999999999999999998877766333322222122 33333 4445788888888853
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
..+-+..|...|++|+.+||++..+...+..|..-.
T Consensus 438 -----~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 438 -----AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred -----HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 445688899999999999999999999999998744
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.033 Score=57.66 Aligned_cols=140 Identities=12% Similarity=0.101 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHH---HcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHH
Q 036322 145 ILHKSARLLSQAI---AMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIA 221 (360)
Q Consensus 145 lL~~Aa~~~s~Al---~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~ 221 (360)
-+..|..+|.+|+ +++|+...|++-++-++..+ ..+.-+++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~------------~~~g~~~~~----------------------- 317 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSL------------ALHGKSELE----------------------- 317 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHH------------HHhcCCCch-----------------------
Confidence 4567888999999 99999999999998777642 111111110
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 222 SLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 222 ~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
.-..+|-+-=++|+++||+|+.|++-=|.++...+.. ..|+.-|++|+.+ +++.++++|--
T Consensus 318 -----------~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~-------~~a~~~f~rA~~L-~Pn~A~~~~~~ 378 (458)
T PRK11906 318 -----------LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA-------KVSHILFEQAKIH-STDIASLYYYR 378 (458)
T ss_pred -----------HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch-------hhHHHHHHHHhhc-CCccHHHHHHH
Confidence 0112333344679999999999999999999985553 4455556666775 55789999988
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 302 AVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 302 GlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
|..+.-.. + .+.|....++|++|+|-.--+ --+.-|+
T Consensus 379 ~~~~~~~G----~--------~~~a~~~i~~alrLsP~~~~~-~~~~~~~ 415 (458)
T PRK11906 379 ALVHFHNE----K--------IEEARICIDKSLQLEPRRRKA-VVIKECV 415 (458)
T ss_pred HHHHHHcC----C--------HHHHHHHHHHHhccCchhhHH-HHHHHHH
Confidence 88654322 2 456888899999999976433 2355555
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.025 Score=48.01 Aligned_cols=56 Identities=20% Similarity=0.061 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhh-------cccchhcHHHHHHHHHHHHHHHHhccC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALF-------FLETAFDADKIFSAAIDNFDAMMLKGN 291 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~-------~~~~a~eAe~L~~aA~dKY~AAl~~~n 291 (360)
.+|-+.|..|++++|....+++|.|.++. ..|...+|...+.+|..=|++++..-+
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34555788888999999999999999988 466777788889999998988888543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.053 Score=36.63 Aligned_cols=86 Identities=20% Similarity=0.332 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
-+.+|...|..++...|++..++++.|..+...+. +.+|++-|..++...+ ..+.+++.+|..+...-
T Consensus 15 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 82 (100)
T cd00189 15 DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK-------YEEALEDYEKALELDP-DNAKAYYNLGLAYYKLG---- 82 (100)
T ss_pred cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHH----
Confidence 35667778899999999999999999988877544 4455555655555433 34688888888865532
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCC
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSD 339 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd 339 (360)
-...|...|+.++.++|+
T Consensus 83 --------~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 83 --------KYEEALEAYEKALELDPN 100 (100)
T ss_pred --------hHHHHHHHHHHHHccCCC
Confidence 256778888888888874
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0074 Score=43.42 Aligned_cols=53 Identities=25% Similarity=0.385 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCch
Q 036322 276 FSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNL 341 (360)
Q Consensus 276 ~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~ 341 (360)
|.+|+.-|+.++... +..+++++..|..+..+- -+.+|+..|+++|.++|++|
T Consensus 13 ~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g------------~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 13 YDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQG------------RYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCcCCC
Confidence 566667777777653 457999999999977554 46788999999999999987
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.024 Score=48.56 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhccc-------chhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHh
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLE-------TAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQR 308 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~-------~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqer 308 (360)
.+|.+.|..|++++|++..++++.|.++...+ ....|...|.+|.+-|..++... |+.+..=+-.+..+
T Consensus 89 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~~ 164 (172)
T PRK02603 89 DKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA----PNNYIEAQNWLKTT 164 (172)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC----chhHHHHHHHHHhc
Confidence 55666888999999999999999999987733 34556677777777777776642 44444444444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.096 Score=50.90 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
+.++..+-+.+.++|.++.+ .++.++|-..|.-.....- ++..+-. .|.+ ..++.+ ++-.++
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~-~~~~~~~-~~~d----~~ll~~----------~gk~~~- 111 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAV-LQKSAIA-YPKD----RELLAA----------QGKNQI- 111 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHH-Hhhhhcc-Cccc----HHHHHH----------HHHHHH-
Confidence 44677788899999999999 9999999998876632221 1221111 1111 111111 111111
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
...-+.+|..-+++|++++|+|.+++-.=|++|-..|...+|+.-|.+|++=+ + +.|.+++|-|.-+-
T Consensus 112 ----~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~------~--~~p~~~nNlgms~~ 179 (257)
T COG5010 112 ----RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA------P--NEPSIANNLGMSLL 179 (257)
T ss_pred ----HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc------c--CCchhhhhHHHHHH
Confidence 23446778889999999999999999999999999999999999888887644 2 45999999998764
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
-+. + ++.|..++..|...-+.+..+++.|.
T Consensus 180 L~g----d--------~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 180 LRG----D--------LEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred HcC----C--------HHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 333 2 23344555555555555777766654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0056 Score=42.44 Aligned_cols=44 Identities=27% Similarity=0.393 Sum_probs=37.1
Q ss_pred hHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhh
Q 036322 295 PDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSC 350 (360)
Q Consensus 295 p~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c 350 (360)
|++++.+|.++..... +.+|+..|+++|+++|+++.+...|..|
T Consensus 1 p~~~~~la~~~~~~G~------------~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQ------------PDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 6788888888766653 6688999999999999999999988764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.22 Score=48.49 Aligned_cols=176 Identities=8% Similarity=-0.083 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHH-HHHHHHHHHHHhccCCCcchHH---HHHHhhhhhhhhcchhHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREEL-KLHFSCKLRRLLLEGDVISVEE---QKRILKGLDYQFMNKDKIA 221 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeL-Kl~~s~~Lr~lla~~~p~s~~~---~~r~~~~ld~~~~~k~~~~ 221 (360)
+.++..++.+++..+|.+..+.++-|.++-..|.- ......-+..++... |-.... ++-++..+
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l----------- 155 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTL----------- 155 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh-----------
Confidence 67889999999999999999999888766554431 011222223334332 221111 11122211
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 222 SLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 222 ~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
..+.+|-.-|..+|+.||.+..|+++=|.+|...+....-+.+..++++=...++.+ ++....|+++-
T Consensus 156 -----------~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P~N~SaW~Yl 223 (320)
T PLN02789 156 -----------GGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NPRNESPWRYL 223 (320)
T ss_pred -----------hhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CCCCcCHHHHH
Confidence 236778889999999999999999999999875311000112344555555577776 44557899988
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 302 AVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 302 GlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
|..|..-.. +- -.-.+|++-+.++++.+|+++.|++-|.-+.+|
T Consensus 224 ~~ll~~~~~--~l------~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 224 RGLFKDDKE--AL------VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHhcCCc--cc------ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 888865211 10 001236677788889999999999988776655
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0074 Score=43.64 Aligned_cols=48 Identities=29% Similarity=0.309 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhccc-chhcHHHHHHHHH
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLE-TAFDADKIFSAAI 280 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~-~a~eAe~L~~aA~ 280 (360)
.=+.+|...|..|++++|++..++||.|++...-+ ...+|.+.|..|+
T Consensus 17 ~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 17 GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34678888999999999999999999999998876 4444444444443
|
... |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.099 Score=57.15 Aligned_cols=168 Identities=11% Similarity=-0.036 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|+++|.++++.+|.++.++.-++.+|+..|+... ....+..+.+.. |. +... -+++.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~e-Al~~l~~l~~~d-p~--~~~~-----------------l~lay 177 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGV-VLKQATELAERD-PT--VQNY-----------------MTLSY 177 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHH-HHHHHHHhcccC-cc--hHHH-----------------HHHHH
Confidence 378999999999999999999877666665544332 112233333332 21 1111 11111
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhc-cCCChhHHHhhHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLK-GNIYAPDALFGWAVAL 305 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~-~n~~ap~AL~NWGlAL 305 (360)
+..-.... ..|.+.|..+++.+|++.+++++--.+|+..+.+.-|.+|..+==+=|...-.. .-.+...-..+|
T Consensus 178 L~~~~~~~-~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~---- 252 (822)
T PRK14574 178 LNRATDRN-YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRM---- 252 (822)
T ss_pred HHHhcchH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhh----
Confidence 11111222 238889999999999999999999999999776665655544322112110000 000001112233
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHH
Q 036322 306 QQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQV 343 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa 343 (360)
|.+.+++.+|+-.++.+|...|+..+..-|..|++
T Consensus 253 ---a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~ 287 (822)
T PRK14574 253 ---AVLPTRSETERFDIADKALADYQNLLTRWGKDPEA 287 (822)
T ss_pred ---cccccccchhhHHHHHHHHHHHHHHHhhccCCCcc
Confidence 23355667899999999999999999977776653
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.062 Score=53.27 Aligned_cols=116 Identities=16% Similarity=0.051 Sum_probs=71.9
Q ss_pred HHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCc
Q 036322 119 LTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVI 198 (360)
Q Consensus 119 v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~ 198 (360)
...|..|=.||-+.|+. --..+|+.+|.+||+++|.++.-+-|=+-||+..|+--.-+-.... ++.= +|.
T Consensus 78 ~~~AE~LK~eGN~~m~~--------~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~-Al~i-Dp~ 147 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKN--------KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCES-ALSI-DPH 147 (304)
T ss_pred HHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHH-HHhc-ChH
Confidence 33444444444444433 3467899999999999999999999999999988755443333222 2222 244
Q ss_pred chHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhh
Q 036322 199 SVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLAL 263 (360)
Q Consensus 199 s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL 263 (360)
++-.++|+=. |.. |--=+++|.++|+.||++||+....=-|-.+|=
T Consensus 148 yskay~RLG~--------------A~~-----~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 148 YSKAYGRLGL--------------AYL-----ALGKYEEAIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHHHH--------------HHH-----ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 3334444411 111 011136677899999999999885555555543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.36 Score=50.56 Aligned_cols=209 Identities=19% Similarity=0.202 Sum_probs=134.7
Q ss_pred HHHHhhhhHHHHhhh---hcCCchHHHHHHH------------HHHHHHHHHHHHc--------CcCChHHHhhhhhhHH
Q 036322 119 LTEANDLPKHAKECM---KSGWDEERAEMIL------------HKSARLLSQAIAM--------QHMSLLAVDQLGNTYL 175 (360)
Q Consensus 119 v~ea~~Llk~are~~---~~~~De~~Ad~lL------------~~Aa~~~s~Al~~--------~P~s~~Avgn~GNalL 175 (360)
..+|..|.++|-+.+ .|-+.+..+..+- .+|+.+|..|+.+ .|.-..++-||+-+|.
T Consensus 215 ~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~ 294 (508)
T KOG1840|consen 215 LEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY 294 (508)
T ss_pred HHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 345566666665553 4446666665543 4688888888865 4555667788998898
Q ss_pred HHHHHHHHH-----HHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhh
Q 036322 176 VREELKLHF-----SCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV--DACEECEELLVKAGRKYRLALSI 248 (360)
Q Consensus 176 ~~GeLKl~~-----s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~--~~~eEaEeLL~eAgrKY~~Al~~ 248 (360)
..|..+--. .-+|..-+.. ...++|...+- +++...+ .-.|++..||..|.+-|..+...
T Consensus 295 ~~GKf~EA~~~~e~Al~I~~~~~~------~~~~~v~~~l~-------~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 295 KQGKFAEAEEYCERALEIYEKLLG------ASHPEVAAQLS-------ELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred ccCChHHHHHHHHHHHHHHHHhhc------cChHHHHHHHH-------HHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 877665331 1122221111 11223322221 1222222 23588999999999999977765
Q ss_pred CC-CchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHH
Q 036322 249 DG-NDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQAR 327 (360)
Q Consensus 249 dp-~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~ 327 (360)
+- .-.+-+-|-|-.+-..|.-.+|+.+|+.|+.+.+.........---.+++-|.+.-++=+ - .++.+++..++
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~---~--~~a~~l~~~~~ 436 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK---Y--EEAEQLFEEAK 436 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc---c--chHHHHHHHHH
Confidence 44 777888899988888999999999999999999877664333223466666766643332 2 46788999999
Q ss_pred HHHHHhhccCCCchHHHHHHH
Q 036322 328 RLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 328 ~kye~ALrLdpd~~qa~~Al~ 348 (360)
..+ . -.-|++|.+...++
T Consensus 437 ~i~-~--~~g~~~~~~~~~~~ 454 (508)
T KOG1840|consen 437 DIM-K--LCGPDHPDVTYTYL 454 (508)
T ss_pred HHH-H--HhCCCCCchHHHHH
Confidence 999 3 34677777665544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.19 Score=56.30 Aligned_cols=179 Identities=22% Similarity=0.213 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH---HHHHHHHHHhccCCCcchHHHHHH-hhhhhhhhcchh
Q 036322 143 EMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL---HFSCKLRRLLLEGDVISVEEQKRI-LKGLDYQFMNKD 218 (360)
Q Consensus 143 d~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl---~~s~~Lr~lla~~~p~s~~~~~r~-~~~ld~~~~~k~ 218 (360)
..-++.|...+..++..+-++|.|.--+||-||..-+-+. ++-.-+...+-.++++++-.-|++ +..+.. +++.
T Consensus 543 k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~--~~rn 620 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN--PSRN 620 (1018)
T ss_pred ccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc--cccC
Confidence 3446889999999999999999999999999998665443 244444444444567775555554 333322 2221
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHH-------------------------
Q 036322 219 KIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDAD------------------------- 273 (360)
Q Consensus 219 ~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe------------------------- 273 (360)
.+-....+..|...|..||+.+|-..=|=-|=||+|+.-+...+|.
T Consensus 621 ---------~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 621 ---------PEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 2445578899999999999999999999999999999844433333
Q ss_pred --HHHHHHHHHHHHHHhc-cCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 274 --KIFSAAIDNFDAMMLK-GNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 274 --~L~~aA~dKY~AAl~~-~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
.=|..||+-|+-.+.+ ..-+.++.+...|-|+-++.. |+.|+..--.|+++.|.++.++
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~------------~~eak~~ll~a~~~~p~~~~v~ 753 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK------------LQEAKEALLKARHLAPSNTSVK 753 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHHhCCccchHH
Confidence 4456677777766653 222468888888888766654 7778888889999999999865
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.26 Score=54.01 Aligned_cols=158 Identities=11% Similarity=-0.023 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
.|...|.++++.+|.++.++..|.-.++.-|....-+ .-++.++ +..|.+. ..+..+. ...
T Consensus 52 ~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~-~~~eka~-~p~n~~~----~~llalA----------~ly--- 112 (822)
T PRK14574 52 PVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVI-DVYERYQ-SSMNISS----RGLASAA----------RAY--- 112 (822)
T ss_pred HHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHH-HHHHHhc-cCCCCCH----HHHHHHH----------HHH---
Confidence 7889999999999999877777765555555554322 2233434 2222221 1111110 000
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
.-+.=+..|..-|+.+++.+|++..+|+.-+....+.+. ..+|++++.+++... |. +.+-+++..
T Consensus 113 --~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q-------~~eAl~~l~~l~~~d----p~--~~~~l~lay 177 (822)
T PRK14574 113 --RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR-------GGVVLKQATELAERD----PT--VQNYMTLSY 177 (822)
T ss_pred --HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC-------HHHHHHHHHHhcccC----cc--hHHHHHHHH
Confidence 001223478889999999999999999844333333433 245666666555542 33 333344433
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 036322 308 RSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREAL 347 (360)
Q Consensus 308 rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al 347 (360)
+..-. .+-.+ |+..|++++.++|+++++.--+
T Consensus 178 L~~~~-------~~~~~-AL~~~ekll~~~P~n~e~~~~~ 209 (822)
T PRK14574 178 LNRAT-------DRNYD-ALQASSEAVRLAPTSEEVLKNH 209 (822)
T ss_pred HHHhc-------chHHH-HHHHHHHHHHhCCCCHHHHHHH
Confidence 33211 11222 9999999999999999986543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0042 Score=42.00 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=28.4
Q ss_pred HHHHhhhCCCchhhHHhHHHhhhcccchhcHH
Q 036322 242 YRLALSIDGNDVRALYNWGLALFFLETAFDAD 273 (360)
Q Consensus 242 Y~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe 273 (360)
|++||+++|+++.|++|-|.++...|...+|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 88999999999999999999999877766553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.055 Score=51.40 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhhhCCCch---hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGNDV---RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~---~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
+.+|...|...+...|++. .|+|--|.++-..+.-.+|-..|...+++|- .....|+|++.-|..+..+-
T Consensus 159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-----~s~~~~dAl~klg~~~~~~g-- 231 (263)
T PRK10803 159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-----KSPKAADAMFKVGVIMQDKG-- 231 (263)
T ss_pred HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CCcchhHHHHHHHHHHHHcC--
Confidence 5678888999999999984 7999888888778887777777777777774 34467999999999876432
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
-..+|+..|+.++...|++..+..|..
T Consensus 232 ----------~~~~A~~~~~~vi~~yP~s~~a~~A~~ 258 (263)
T PRK10803 232 ----------DTAKAKAVYQQVIKKYPGTDGAKQAQK 258 (263)
T ss_pred ----------CHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 356788999999999999999988843
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.4 Score=46.87 Aligned_cols=179 Identities=11% Similarity=0.035 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHH--HHHHHHHhccCCCcchH-HHHHHhhhhhhhhcchhHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHF--SCKLRRLLLEGDVISVE-EQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~--s~~Lr~lla~~~p~s~~-~~~r~~~~ld~~~~~k~~~~~a 223 (360)
..|.+.+.++++..|.++.++.-++.+|+..|.-..-. ...|+....-+ |.... -+..+..++-.+.
T Consensus 170 ~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~l~~~~--------- 239 (398)
T PRK10747 170 HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQQAWIGLMDQA--------- 239 (398)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHH---------
Confidence 46778889999999999999999999999887665321 22222211111 10000 0001111110000
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH--------------------
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF-------------------- 283 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY-------------------- 283 (360)
.- ....+.+.. -+......-|++..+.+.-+.++...|...+|.+++..+.++-
T Consensus 240 ~~---~~~~~~l~~---~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~a 313 (398)
T PRK10747 240 MA---DQGSEGLKR---WWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQL 313 (398)
T ss_pred HH---hcCHHHHHH---HHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHH
Confidence 00 000000000 1111112225566666666666666666666666665555432
Q ss_pred ----HHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 284 ----DAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 284 ----~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
+..+. ..+..|+.++-.|-. .-+.+.|.+|...|++++.++|+++... .|..|-.+++
T Consensus 314 l~~~e~~lk-~~P~~~~l~l~lgrl------------~~~~~~~~~A~~~le~al~~~P~~~~~~-~La~~~~~~g 375 (398)
T PRK10747 314 EKVLRQQIK-QHGDTPLLWSTLGQL------------LMKHGEWQEASLAFRAALKQRPDAYDYA-WLADALDRLH 375 (398)
T ss_pred HHHHHHHHh-hCCCCHHHHHHHHHH------------HHHCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcC
Confidence 11111 111233333333322 1233469999999999999999987733 5666655554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.024 Score=40.80 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
+.+|.+.|+.+++.+|++.+++++-|.++...|...+|..+|.++++.
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999988887777777777654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.3 Score=48.08 Aligned_cols=128 Identities=19% Similarity=0.166 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
..-+..++.-|+.||.+.+=..-||-+|+.+|+.-
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~--------------------------------------------- 173 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRAS--------------------------------------------- 173 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchh---------------------------------------------
Confidence 34455677778888888888888888888643322
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc---ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF---LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~---~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
.|-..|+.|+++.|+..+.+-+||-+|.. +..+.+++.||.+|..+ +...+-|++-.|+
T Consensus 174 ----------~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--------D~~~iral~lLA~ 235 (287)
T COG4235 174 ----------DALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--------DPANIRALSLLAF 235 (287)
T ss_pred ----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--------CCccHHHHHHHHH
Confidence 23347888889999999999999988888 44567777777766532 2234677777777
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 304 ALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 304 ALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
++.+=. -.++|+..++.-|.+.|-+---+..+..
T Consensus 236 ~afe~g------------~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 236 AAFEQG------------DYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHcc------------cHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 744322 3556677777777777766555444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.47 Score=50.88 Aligned_cols=170 Identities=19% Similarity=0.240 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHH--HHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKL--RRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~L--r~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+|-++||+|..|+|.=..|.--+|+++..-||=-+-+++=- ..+++..--|.. .-|++--..
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L------Ylgmey~~t---------- 393 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL------YLGMEYMRT---------- 393 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH------HHHHHHHHh----------
Confidence 56688999999999999999999999998888777666511 123344433332 223332111
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcH---------------------------------
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDA--------------------------------- 272 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eA--------------------------------- 272 (360)
--+..|-+-|..|+.++|+|+=.+--=|.+.-.-+.=++|
T Consensus 394 -------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 394 -------NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred -------ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 2345566678888888888875544333332212222223
Q ss_pred -HHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 273 -DKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 273 -e~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
-..|.+||+-|++++.+++ ..+.++-.-|.-..- ..-+..|+..|-+||.++||+.-+.+-|..|+
T Consensus 467 kl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~l------------lgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHL------------LGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHH------------hcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3456666666666666544 335555554544322 22567788888888888888888877777776
Q ss_pred hh
Q 036322 352 SE 353 (360)
Q Consensus 352 ~e 353 (360)
-.
T Consensus 534 e~ 535 (611)
T KOG1173|consen 534 ED 535 (611)
T ss_pred Hh
Confidence 43
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.62 Score=49.82 Aligned_cols=59 Identities=24% Similarity=0.269 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 275 IFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 275 L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
=|..|+|=|++|+++.| +.---.|..|-.|..--+ + ..||.-|++||+|.|++--||-=
T Consensus 445 efdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~-----s-------~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNR-----S-------EEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred HHHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcc-----c-------HHHHHHHHHHHhcCCCeeeeehh
Confidence 36778888888887633 224455666766543221 2 23677888888888887666543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.16 Score=49.34 Aligned_cols=95 Identities=23% Similarity=0.234 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhhhCCCchhh-----HHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHh
Q 036322 234 LLVKAGRKYRLALSIDGNDVRA-----LYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQR 308 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~A-----LYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqer 308 (360)
.+.+|..+|..||++||.-..- |-|-|.|+ =.-.-|+.||+--..++++.++| -.||-+ |
T Consensus 110 dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~-------iKl~k~e~aI~dcsKaiel~pty-~kAl~R-------R 174 (271)
T KOG4234|consen 110 DYEEANSKYQEALESCPSTSTEERSILYSNRAAAL-------IKLRKWESAIEDCSKAIELNPTY-EKALER-------R 174 (271)
T ss_pred cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHH-------HHhhhHHHHHHHHHhhHhcCchh-HHHHHH-------H
Confidence 3567899999999999965441 22334333 34566899999999999998876 344443 3
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 309 SRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 309 A~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
|.+ -|+..-+..|+.-|...+-++|...|+++|+.
T Consensus 175 Aea-----yek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 175 AEA-----YEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHH-----HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 332 36667788999999999999999999999965
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=95.25 E-value=3.3 Score=40.57 Aligned_cols=35 Identities=9% Similarity=0.122 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELK 181 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLK 181 (360)
..|.+.++..++..|.++.++.-+|.+|+..|...
T Consensus 170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 45667889999999999999999999999988775
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.9 Score=48.81 Aligned_cols=126 Identities=19% Similarity=0.150 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHH-Hhhhc----------------ccchhcHH----------HHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWG-LALFF----------------LETAFDAD----------KIFSAA 279 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWG-lAL~~----------------~~~a~eAe----------~L~~aA 279 (360)
.|.||---++.|..-|...|.-.|+.++++..=| +|-.- -.+.++|. ..|.-|
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 3555555578888999999999999999999988 44111 12344554 445578
Q ss_pred HHHHHHHHhccCCChhHHHhhHHHHHHHhhhc--CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 280 IDNFDAMMLKGNIYAPDALFGWAVALQQRSRL--RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 280 ~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l--r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
-+||..++....+. |++|---+++=--+.++ ..++++-+.+....|+.+|.+||+.+|-|.=|.+.+--|.++
T Consensus 584 ~k~f~~i~~~~~~~-~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 584 KKKFETILKKTSTK-TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE 658 (1018)
T ss_pred ccHHHHHHhhhccC-CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh
Confidence 89999888754433 55554333332333333 333455566788899999999999999998888877666654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.15 Score=55.88 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHH--HHHHHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 229 EECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADK--IFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~--L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
=+....+++|-..|-.|+.+||+++..+.-=|-.|...|...=|++ +... |+++.+. .|+|.|+-|-.++
T Consensus 694 ~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~d-------alr~dp~-n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSD-------ALRLDPL-NHEAWYYLGEVFK 765 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH-------HHhhCCC-CHHHHHHHHHHHH
Confidence 3445889999999999999999999999999999988776544544 6654 4555454 5999999999977
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCch
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNL 341 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~ 341 (360)
.+. .++||+.||+.|++|++.+|
T Consensus 766 ~~G------------d~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 766 KLG------------DSKQAAECFQAALQLEESNP 788 (799)
T ss_pred Hcc------------chHHHHHHHHHHHhhccCCC
Confidence 655 35599999999999999887
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.02 E-value=2.2 Score=47.16 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhccc
Q 036322 316 SKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELNH 356 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~~ 356 (360)
.-+....+..|+..|-.|+.+||+++++.-||..|..|+-.
T Consensus 693 ~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 35777789999999999999999999999999999998754
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.062 Score=55.67 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhhCCCchhh---HHhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 236 VKAGRKYRLALSIDGNDVRA---LYNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~A---LYNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
.+|..-|++||+++|++..| +||=|.++..-|...+|..-+..|++-
T Consensus 92 eEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 92 KDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566899999999999876 999999999999999999999998884
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.05 Score=39.05 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL 182 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl 182 (360)
+..|+++|.+++...|.+.++.++||++|+..|+...
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 43 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDE 43 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHH
Confidence 5689999999999999999999999999999988874
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.16 Score=52.79 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=53.5
Q ss_pred hCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhH---HHhhHHHHHHHhhhcCCCChHHHHHHHH
Q 036322 248 IDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPD---ALFGWAVALQQRSRLRPRNSKEKVKLLQ 324 (360)
Q Consensus 248 ~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~---AL~NWGlALqerA~lr~~sskEk~~Ll~ 324 (360)
.+|++..+++|.|++|...+. |.+|+.-|++++.+.+ +.++ ++||-|.++..+-+ ..|+.+.++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGr-------yeEAIa~f~rALeL~P-d~aeA~~A~yNLAcaya~LGr-----~dEAla~Lr 136 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGR-------VKDALAQFETALELNP-NPDEAQAAYYNKACCHAYREE-----GKKAADCLR 136 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCC-CchHHHHHHHHHHHHHHHcCC-----HHHHHHHHH
Confidence 589999999999999988666 6778888888888744 4454 59999999987654 457777777
Q ss_pred HHHHH
Q 036322 325 QARRL 329 (360)
Q Consensus 325 qA~~k 329 (360)
+|+..
T Consensus 137 rALel 141 (453)
T PLN03098 137 TALRD 141 (453)
T ss_pred HHHHh
Confidence 77664
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.2 Score=47.72 Aligned_cols=161 Identities=16% Similarity=0.105 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHH--H
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLL--V 225 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL--~ 225 (360)
+..+.|..|..++|.+++.+|.=|-.+.+.++.+-.++. .+...+= +|-.+ -+-|.. +=++ +
T Consensus 378 ~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD-F~Kai~L-~pe~~--~~~iQl------------~~a~Yr~ 441 (606)
T KOG0547|consen 378 KMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD-FQKAISL-DPENA--YAYIQL------------CCALYRQ 441 (606)
T ss_pred HHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH-HHHHhhc-Chhhh--HHHHHH------------HHHHHHH
Confidence 345678999999999999999999888887766644332 1111100 01100 000100 0011 1
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCC-----hhHHHhh
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIY-----APDALFG 300 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~-----ap~AL~N 300 (360)
+.-.+|+..+.++-+|| |+-+..+-=.|=+|.+-. =|..|++.|+.++.+-++. .+.-|.+
T Consensus 442 ~k~~~~m~~Fee~kkkF-------P~~~Evy~~fAeiLtDqq-------qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKKF-------PNCPEVYNLFAEILTDQQ-------QFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHhC-------CCCchHHHHHHHHHhhHH-------hHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 22366777777777766 777777777788887733 3788999999888876651 2444555
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 301 WAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 301 WGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
=|+.+-+ + + +=+-+|+.+.++|+-+||-..||.+.|.+
T Consensus 508 Ka~l~~q-----w---k---~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq 545 (606)
T KOG0547|consen 508 KALLVLQ-----W---K---EDINQAENLLRKAIELDPKCEQAYETLAQ 545 (606)
T ss_pred hhHhhhc-----h---h---hhHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 5554332 2 2 34778999999999999999999887754
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.042 Score=39.43 Aligned_cols=49 Identities=10% Similarity=-0.012 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
+.+|.+.|..++..+|++.++.+++|.++...|...+|..++..+..+.
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5778889999999999999999999999999998888888777665544
|
... |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=1.3 Score=49.63 Aligned_cols=191 Identities=15% Similarity=0.051 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCc---chHH--HHHHhhhhhhhhcchhHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVI---SVEE--QKRILKGLDYQFMNKDKI 220 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~---s~~~--~~r~~~~ld~~~~~k~~~ 220 (360)
+.++.+.+..+++..|.++.+++-+|-.|+..+....-. .+ .++.--... .... ...++.-. .++.
T Consensus 47 ~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~--lv-~~l~~~~~~~~~~~ve~~~~~i~~~~----~~k~-- 117 (906)
T PRK14720 47 TDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSN--LL-NLIDSFSQNLKWAIVEHICDKILLYG----ENKL-- 117 (906)
T ss_pred HHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhh--hh-hhhhhcccccchhHHHHHHHHHHhhh----hhhH--
Confidence 456778888999999999999999998666655532211 11 222111000 0000 01111111 1111
Q ss_pred HHHHHHhhHHHH--HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHH
Q 036322 221 ASLLVDACEECE--ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL 298 (360)
Q Consensus 221 ~~aL~~~~eEaE--eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL 298 (360)
||...+.-.+ ....+|...|.++|++||+++.||-|-|-.++.. .-..|..++..|+..|=. +-+-.+++
T Consensus 118 --Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~-----~kq~~~~~ 189 (906)
T PRK14720 118 --ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK-----KKQYVGIE 189 (906)
T ss_pred --HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh-----hhcchHHH
Confidence 2332222222 4467888999999999999999999999999998 888899999999776521 11112333
Q ss_pred hhHHHH-----------HHHhhhcCCC--------------ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 299 FGWAVA-----------LQQRSRLRPR--------------NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 299 ~NWGlA-----------LqerA~lr~~--------------sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
--|--- ++-..++... ..=-+.+.|-+++..+..+|-++|.|..++.-|.-|.-+
T Consensus 190 e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 190 EIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 334321 1111122111 001233456699999999999999999999999999763
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.92 Score=47.64 Aligned_cols=123 Identities=18% Similarity=0.148 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchh-hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVR-ALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~-ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
-.||+.++.+|.+-|...+-..+.+.. .|-|=+..++.-+..-+|..|+..|.+-|..+....++.-+..+.|.|--++
T Consensus 299 f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~ 378 (508)
T KOG1840|consen 299 FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL 378 (508)
T ss_pred hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 489999999999999996666655554 4555555555588888999999999999987777767677899999999988
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHhhcc-CCCchHHHHHHHhhhhhcc
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLYQDALHM-NSDNLQVREALSSCMSELN 355 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~kye~ALrL-dpd~~qa~~Al~~c~~el~ 355 (360)
..-+ =.|++++++.|+.+.++..-- ++...-+++=|..-..|++
T Consensus 379 ~~gk-----~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k 423 (508)
T KOG1840|consen 379 KMGK-----YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK 423 (508)
T ss_pred Hhcc-----hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc
Confidence 7655 358888999999888876543 4443444444433334443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.083 Score=33.41 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=27.6
Q ss_pred hHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc
Q 036322 295 PDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN 340 (360)
Q Consensus 295 p~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~ 340 (360)
|+++++.|..+...- -+++|+..|++||+++|++
T Consensus 1 a~~~~~lg~~~~~~~------------~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLG------------NYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHHCcCC
Confidence 578888888865543 5789999999999999986
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.30 E-value=1 Score=48.06 Aligned_cols=149 Identities=16% Similarity=0.204 Sum_probs=100.1
Q ss_pred HHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHh-ccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 149 SARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLL-LEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 149 Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~ll-a~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
|..-|.++|.++|...--+--+|-+|+-.....+-+ .-+..+. -+..-++++.+..-.+ .|.
T Consensus 345 a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~-~~F~~A~~ldp~n~dvYyHRgQm~--------------flL-- 407 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMW-KDFNKAEDLDPENPDVYYHRGQMR--------------FLL-- 407 (606)
T ss_pred hhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHH-HHHHHHHhcCCCCCchhHhHHHHH--------------HHH--
Confidence 556788899998887776667776666433222111 1111111 1111222333221111 111
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
.-+.+|..-|..|++++|+..=++.--+.|+--...-.+..+.|.++++|| ++ .|+.|+-.|-.|-+
T Consensus 408 -----~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF------P~--~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 408 -----QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF------PN--CPEVYNLFAEILTD 474 (606)
T ss_pred -----HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CC--CchHHHHHHHHHhh
Confidence 235678889999999999999888877777665666677889999999999 33 58999999999876
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhhccCCC
Q 036322 308 RSRLRPRNSKEKVKLLQQARRLYQDALHMNSD 339 (360)
Q Consensus 308 rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd 339 (360)
.- =+-+|+..|..|+.|.|.
T Consensus 475 qq------------qFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 475 QQ------------QFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HH------------hHHHHHHHHHHHHhhccc
Confidence 54 377899999999999999
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.29 Score=46.62 Aligned_cols=83 Identities=11% Similarity=0.064 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHcCcCC---hHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHH
Q 036322 147 HKSARLLSQAIAMQHMS---LLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s---~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
.+|+..|.+.+...|.+ +.|++-+|.+|...|..
T Consensus 160 ~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~------------------------------------------- 196 (263)
T PRK10803 160 DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK------------------------------------------- 196 (263)
T ss_pred HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH-------------------------------------------
Confidence 46777899999999999 58999999888854322
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCC---chhhHHhHHHhhhcccchhcHHHHHHHHHHHHH
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGN---DVRALYNWGLALFFLETAFDADKIFSAAIDNFD 284 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~---d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~ 284 (360)
..|...|..++...|+ ..+|||.=|......+....|.+.|...+++|-
T Consensus 197 ------------~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 197 ------------DDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred ------------HHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 2334457777776665 577888878877778888888888888888883
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.12 Score=33.25 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=27.8
Q ss_pred hHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc
Q 036322 295 PDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN 340 (360)
Q Consensus 295 p~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~ 340 (360)
|.+|++-|.++..+- -+.+|+..|+.||+++|++
T Consensus 1 a~~~~~~g~~~~~~~------------~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLG------------DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhC------------CchHHHHHHHHHHHHCcCC
Confidence 568888888876654 4788999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=3.3 Score=43.20 Aligned_cols=104 Identities=15% Similarity=0.003 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcc-cchhcHHHHHHHHHHHHHHHHhc-cCCChhHHHhhHHHHHHHhhhc
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFFL-ETAFDADKIFSAAIDNFDAMMLK-GNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~-~~a~eAe~L~~aA~dKY~AAl~~-~n~~ap~AL~NWGlALqerA~l 311 (360)
-+..|-.-|.+|+++||+.+.|+-.-+++-... .-...-+.-+.++.+...+++.+ .....|.++.-.|+. .+.
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~--~~~-- 432 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQ--ALV-- 432 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHH--HHh--
Confidence 355788889999999999988877644433220 00111122334555555555553 122336666655554 222
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhh
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSC 350 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c 350 (360)
+ .-+.+|...|++|+.|+|+ .++...+-.|
T Consensus 433 ~--------g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~ 462 (517)
T PRK10153 433 K--------GKTDEAYQAINKAIDLEMS-WLNYVLLGKV 462 (517)
T ss_pred c--------CCHHHHHHHHHHHHHcCCC-HHHHHHHHHH
Confidence 1 2466799999999999995 6666655543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.93 E-value=2.3 Score=45.79 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELK 181 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLK 181 (360)
+|+.+|.+|-.+=|.+|.-..=+|-=|..-+.+|
T Consensus 364 QAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 364 QAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 4666677777776777777666773333333333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.65 E-value=4.2 Score=43.09 Aligned_cols=175 Identities=21% Similarity=0.191 Sum_probs=92.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcch
Q 036322 138 DEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNK 217 (360)
Q Consensus 138 De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k 217 (360)
++-.+.+.|+.+ +++|..+|-++.|+--=||+|+..|+....+-. .|++--= .|. +=++-+||= .+
T Consensus 312 ~~K~~~rAL~~~----eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia-FR~Aq~L-ap~----rL~~Y~GL~---hs- 377 (564)
T KOG1174|consen 312 DEKKFERALNFV----EKCIDSEPRNHEALILKGRLLIALERHTQAVIA-FRTAQML-APY----RLEIYRGLF---HS- 377 (564)
T ss_pred hhhhHHHHHHHH----HHHhccCcccchHHHhccHHHHhccchHHHHHH-HHHHHhc-chh----hHHHHHHHH---HH-
Confidence 344444444444 567899999999999999999987776654221 2221111 011 122333331 11
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHH-HhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhH
Q 036322 218 DKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWG-LALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPD 296 (360)
Q Consensus 218 ~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWG-lAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~ 296 (360)
-|+ -..-.+-++-|-..|+.- |+..++|.=.| .++.+...+.| .|-+=|+..+.+-|-|-|.
T Consensus 378 -----YLA--~~~~kEA~~~An~~~~~~----~~sA~~LtL~g~~V~~~dp~~rE------KAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 378 -----YLA--QKRFKEANALANWTIRLF----QNSARSLTLFGTLVLFPDPRMRE------KAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred -----HHh--hchHHHHHHHHHHHHHHh----hcchhhhhhhcceeeccCchhHH------HHHHHHHhhhccCCccHHH
Confidence 000 011112223333333333 77777777777 33333222332 2222334555554555554
Q ss_pred HHhhHHHHHHHhhhcCCCChHHHHH--------------------------HHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 297 ALFGWAVALQQRSRLRPRNSKEKVK--------------------------LLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 297 AL~NWGlALqerA~lr~~sskEk~~--------------------------Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
++ ++.++-.+.+. .+.... -++.|.+.|..||++||++.-++..|..
T Consensus 441 V~-----~~AEL~~~Eg~-~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 441 VN-----LIAELCQVEGP-TKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred HH-----HHHHHHHhhCc-cchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 42 34444433333 233333 3467888999999999999999999864
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.52 Score=45.95 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
++|=+.|+.|+++.|++..++-|-|.-+...|+-.+|++|+..|.- .+...+.+-.|-.++.
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--------~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--------SPAADSRVRQNLALVV 212 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--------CCCCchHHHHHHHHHH
Confidence 5677799999999999999999999999999999999999887632 2222356666655553
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.48 E-value=5.6 Score=43.32 Aligned_cols=178 Identities=18% Similarity=0.178 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHH----hhhhhhhhcchh
Q 036322 143 EMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRI----LKGLDYQFMNKD 218 (360)
Q Consensus 143 d~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~----~~~ld~~~~~k~ 218 (360)
.-=..+|..+|++.-..-|...=.+-|+|-||-+.++--. +.++=..+-+..|..+.+ -.+ +=-|-..+.- .
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~--a~~~F~~~r~~~p~rv~~-meiyST~LWHLq~~v~L-s 407 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQ--AERIFSLVRRIEPYRVKG-MEIYSTTLWHLQDEVAL-S 407 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccccccc-hhHHHHHHHHHHhhHHH-H
Confidence 4456788899999545566777888899988887665432 222222333455554321 111 1111000000 0
Q ss_pred HHHHHHHHh--------hHHH-----HHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHH
Q 036322 219 KIASLLVDA--------CEEC-----EELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDA 285 (360)
Q Consensus 219 ~~~~aL~~~--------~eEa-----EeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~A 285 (360)
-++.-|++. |--+ .+=...|.+-|.+||++||+..=||.=||=-+.. -.=|..|...|+.
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~-------~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA-------TEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh-------hHHHHhHHHHHHh
Confidence 112222222 2222 2446789999999999999999999888865554 3336788889999
Q ss_pred HHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 286 MMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 286 Al~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
|+.+ ++.-.-|+|..|+.+ ++ .+-++.|.-.|++|+.+||.+-+.+
T Consensus 481 Al~~-~~rhYnAwYGlG~vy-----~K-------qek~e~Ae~~fqkA~~INP~nsvi~ 526 (638)
T KOG1126|consen 481 ALGV-DPRHYNAWYGLGTVY-----LK-------QEKLEFAEFHFQKAVEINPSNSVIL 526 (638)
T ss_pred hhcC-CchhhHHHHhhhhhe-----ec-------cchhhHHHHHHHhhhcCCccchhHH
Confidence 9985 433357888778763 22 3358899999999999999997654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.57 E-value=1 Score=32.67 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 036322 275 IFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREAL 347 (360)
Q Consensus 275 L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al 347 (360)
-|..|.+-++.++.+.| ..|.+++.-|..+...- -+..|...|+.+|.++|+++++.-..
T Consensus 10 ~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g------------~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 10 DYEEALEVLERALELDP-DDPELWLQRARCLFQLG------------RYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred CHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhc------------cHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 36788888888888644 57899999888865543 57889999999999999999987654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=1.2 Score=46.50 Aligned_cols=79 Identities=14% Similarity=0.058 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
..+|.++-..|++++|.++-|++-+|.++...|+..
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~-------------------------------------------- 355 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAK-------------------------------------------- 355 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchh--------------------------------------------
Confidence 456777788899999999999999997777654422
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAA 279 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA 279 (360)
.|---+.+|+.++|+...++|==|..+...|.+.+|......|
T Consensus 356 -----------~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 356 -----------VSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred -----------hHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1112467889999999999998888888877765555444443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.97 E-value=1.3 Score=47.22 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.-|++-|-.||.++|..|=-|-|=-.+....+. |.+|.+-=.+.+.+.| +=|.+|.+-|.|++.+..
T Consensus 18 ~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~-------~~~al~da~k~~~l~p-~w~kgy~r~Gaa~~~lg~---- 85 (539)
T KOG0548|consen 18 FETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGS-------YEKALKDATKTRRLNP-DWAKGYSRKGAALFGLGD---- 85 (539)
T ss_pred HHHHHHHHHHHHccCCCccchhcchHHHHHHHhh-------HHHHHHHHHHHHhcCC-chhhHHHHhHHHHHhccc----
Confidence 3567889999999999988777676666554222 3333333334445433 349999999999988874
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
+..|+.-|.+.|..+|+|+|....|.+-.
T Consensus 86 --------~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 --------YEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred --------HHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 67799999999999999999999987654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=90.88 E-value=1.5 Score=37.54 Aligned_cols=92 Identities=24% Similarity=0.209 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhhCC---CchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcC
Q 036322 236 VKAGRKYRLALSIDG---NDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLR 312 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp---~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr 312 (360)
.+|..-|++|++... ...+|+.+.|..+..-|...+|..+|.+++..|- .+...+.+-+--+++|..+.+
T Consensus 18 ~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p-----~~~~~~~l~~f~Al~L~~~gr-- 90 (120)
T PF12688_consen 18 EEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP-----DDELNAALRVFLALALYNLGR-- 90 (120)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CccccHHHHHHHHHHHHHCCC--
Confidence 567778999998744 3478999999999999999999999999998773 222234444555666665553
Q ss_pred CCChHHHHHHHHH----HHHHHHHhhccC
Q 036322 313 PRNSKEKVKLLQQ----ARRLYQDALHMN 337 (360)
Q Consensus 313 ~~sskEk~~Ll~q----A~~kye~ALrLd 337 (360)
.+|..+.+-+ -...|++||+..
T Consensus 91 ---~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 91 ---PKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566655544 345777777643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=90.87 E-value=3 Score=38.92 Aligned_cols=115 Identities=10% Similarity=-0.047 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhhCCCchhhH---HhHHHhhhcccchhcHHHHHHHHHHHHHHHHhc--cCCChhHHHhhHHHHHHHh
Q 036322 234 LLVKAGRKYRLALSIDGNDVRAL---YNWGLALFFLETAFDADKIFSAAIDNFDAMMLK--GNIYAPDALFGWAVALQQR 308 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~AL---YNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~--~n~~ap~AL~NWGlALqer 308 (360)
-+..|.+.|..++...|+..-+- |+=|.+.-.-+. |.+|+.-|+..+.. .+...|.|+|--|++...+
T Consensus 47 ~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~-------y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 47 NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD-------LPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 35578889999999999876554 666666555665 45555555555543 3446789999999885444
Q ss_pred hh-----c-CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHH---HHhhhhhcc
Q 036322 309 SR-----L-RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA---LSSCMSELN 355 (360)
Q Consensus 309 A~-----l-r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A---l~~c~~el~ 355 (360)
.. . ......-=....++|+..|+..|+.=|+++-+.+| |..|...|-
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 31 1 11101111345788999999999999999988888 777776554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.76 E-value=1.8 Score=46.04 Aligned_cols=102 Identities=22% Similarity=0.250 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
-+.|...|++|+.+||....|-.=-|=--.+-+.+ .+||+-|+.|+.++|. ..-|.|..|-|+.-+
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt-------~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim------ 411 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT-------HAAIESYRRAVDINPR-DYRAWYGLGQAYEIM------ 411 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc-------HHHHHHHHHHHhcCch-hHHHHhhhhHHHHHh------
Confidence 46788999999999998877644333222221111 5799999999998775 478999889886433
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhccc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELNH 356 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~~ 356 (360)
..=.=|.=+|++|+.+.|+++-...||-.|-+-||.
T Consensus 412 ------~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 412 ------KMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR 447 (559)
T ss_pred ------cchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc
Confidence 233457789999999999999999999999887764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=90.47 E-value=3.6 Score=36.78 Aligned_cols=115 Identities=14% Similarity=0.070 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhhCCC---chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGN---DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~---d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
+.+|.+.|...+..-|+ -.+|++.-|-+.-..+.-.+|...|..-+++|= .....|.|+|..|++.-....=
T Consensus 21 y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP-----~~~~~~~A~Y~~g~~~~~~~~~ 95 (203)
T PF13525_consen 21 YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP-----NSPKADYALYMLGLSYYKQIPG 95 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T-----T-TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CCcchhhHHHHHHHHHHHhCcc
Confidence 45666677777776664 457788777776666665555444444444442 2235689999999987665421
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHH---HHhhhhhcc
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA---LSSCMSELN 355 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A---l~~c~~el~ 355 (360)
... ...-.+...+|+..|+..|+.-|+++-+.+| |..|+..|-
T Consensus 96 ~~~-~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la 141 (203)
T PF13525_consen 96 ILR-SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA 141 (203)
T ss_dssp HH--TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred chh-cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence 000 1233467899999999999999999988877 777776553
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=90.40 E-value=12 Score=42.30 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHH
Q 036322 143 EMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLR 189 (360)
Q Consensus 143 d~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr 189 (360)
.-.+..|+=||++||.++|++-+-+++-.--|..+|.++..+---++
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~ 266 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQ 266 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 44577899999999999999999999999999999999987666555
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.25 E-value=1 Score=46.42 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 276 FSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 276 ~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
|.+|++.=..+|...+ ..+.|||+-|-|+-.+.- +.-|+.-|++|+.++|+|..|...|..|..
T Consensus 273 ~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e------------~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDP-NNVKALYRRGQALLALGE------------YDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhcc------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 5567777777777544 458999999999877763 567889999999999999999999887753
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.44 E-value=0.91 Score=46.58 Aligned_cols=86 Identities=26% Similarity=0.234 Sum_probs=67.9
Q ss_pred HHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 036322 116 DRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEG 195 (360)
Q Consensus 116 ~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~ 195 (360)
...+.||..-||+|-++-+.|-++ +|+++|+-|+++.|..++++--.|- |+.
T Consensus 110 pa~~kEA~~Al~~A~~~~~~Gk~e--------kA~~lfeHAlalaP~~p~~L~e~G~-----------f~E--------- 161 (472)
T KOG3824|consen 110 PAKVKEAILALKAAGRSRKDGKLE--------KAMTLFEHALALAPTNPQILIEMGQ-----------FRE--------- 161 (472)
T ss_pred chhhHHHHHHHHHHHHHHhccchH--------HHHHHHHHHHhcCCCCHHHHHHHhH-----------HHH---------
Confidence 357899999999999997777654 7889999999999999999888871 111
Q ss_pred CCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhh
Q 036322 196 DVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALF 264 (360)
Q Consensus 196 ~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~ 264 (360)
- ..-+++|-.-|-+|+.++|...+||.|-..-+-
T Consensus 162 --------------~---------------------~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~p 195 (472)
T KOG3824|consen 162 --------------M---------------------HNEIVEADQCYVKALTISPGNSEALVNRARTTP 195 (472)
T ss_pred --------------h---------------------hhhhHhhhhhhheeeeeCCCchHHHhhhhccch
Confidence 0 122467777899999999999999999766543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=89.43 E-value=1.2 Score=32.94 Aligned_cols=77 Identities=13% Similarity=0.084 Sum_probs=52.3
Q ss_pred CCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 036322 250 GNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRL 329 (360)
Q Consensus 250 p~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~k 329 (360)
|+-..+|.|=|.++..-+.-.+|...|.+|++-++ .+.-.......+++|-|..+..+-. ..++.+.+++|...
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~lg~~~~~~g~-----~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEE-QLGDDHPDTANTLNNLGECYYRLGD-----YEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHHHHTTH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhh
Confidence 34457888999999999999999999999998843 2221111124677888888776654 45777777777776
Q ss_pred HHH
Q 036322 330 YQD 332 (360)
Q Consensus 330 ye~ 332 (360)
|++
T Consensus 76 ~~k 78 (78)
T PF13424_consen 76 FEK 78 (78)
T ss_dssp HHH
T ss_pred hcC
Confidence 653
|
... |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.29 E-value=7.2 Score=44.88 Aligned_cols=189 Identities=17% Similarity=0.149 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
+|-+||.+|++++|.+.+|---..-||.+.-.-...++--|+ .+...|.-.-.+.-+.+|+-. +.+
T Consensus 510 RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~--~~qka~a~~~k~nW~~rG~yy--Lea---------- 575 (1238)
T KOG1127|consen 510 RAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR--AAQKAPAFACKENWVQRGPYY--LEA---------- 575 (1238)
T ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH--HhhhchHHHHHhhhhhccccc--cCc----------
Confidence 355677777777777777766666666654443333332222 122222221112222244322 122
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHH--------HHH-HHHhccCCChhHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAID--------NFD-AMMLKGNIYAPDAL 298 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~d--------KY~-AAl~~~n~~ap~AL 298 (360)
.-+-.|..-++.|++.+|.|+.+--+=|=|--..|.-..|-++|..|.. +|. +++++-+----.|+
T Consensus 576 -----~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 576 -----HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred -----cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 1234455578999999999988877766666667777778888876653 444 45554222224777
Q ss_pred hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhccc
Q 036322 299 FGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELNH 356 (360)
Q Consensus 299 ~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~~ 356 (360)
-..|.-++.++.=++.--.=.+-.+.-|+..+-.-++..|=+- +..++.+|+.-|.|
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~-~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDF-FEKSIESFIVSLIH 707 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHH
Confidence 7788888888875555222233345555544444444433221 22344455444433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=89.27 E-value=1.1 Score=41.67 Aligned_cols=80 Identities=11% Similarity=0.055 Sum_probs=59.4
Q ss_pred CCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 036322 250 GNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRL 329 (360)
Q Consensus 250 p~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~k 329 (360)
..+...+|..|..+...|.-.+|..+|++...+|- ...+.++|.++-|.++-.... ..+|+..
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-----~s~~a~~a~l~la~ayy~~~~------------y~~A~~~ 91 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-----FGPYSQQVQLDLIYAYYKNAD------------LPLAQAA 91 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHhcCC------------HHHHHHH
Confidence 35777888888888777775555555555555442 333567888988888765542 7899999
Q ss_pred HHHhhccCCCchHHHHH
Q 036322 330 YQDALHMNSDNLQVREA 346 (360)
Q Consensus 330 ye~ALrLdpd~~qa~~A 346 (360)
|++.|++.|++|.+-.|
T Consensus 92 ~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 92 IDRFIRLNPTHPNIDYV 108 (243)
T ss_pred HHHHHHhCcCCCchHHH
Confidence 99999999999999877
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.56 Score=32.39 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhh
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGN 172 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GN 172 (360)
+.+|.+.|.++|+..|+++.|...||.
T Consensus 17 ~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 17 PDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457889999999999999999999883
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.61 E-value=4.1 Score=40.35 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+..|..-|.+|+.+.|++++..+-||.||.- .+ ++.
T Consensus 172 ~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~----------------~a-~~~--------------------------- 207 (287)
T COG4235 172 ASDALLAYRNALRLAGDNPEILLGLAEALYY----------------QA-GQQ--------------------------- 207 (287)
T ss_pred hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------------hc-CCc---------------------------
Confidence 3567788999999999999999999987763 12 221
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChh
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAP 295 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap 295 (360)
+. .+|..-++.|+..||++.+|++=-|.+....+. |.+|+.-++.++.+.+...|
T Consensus 208 -~t-------a~a~~ll~~al~~D~~~iral~lLA~~afe~g~-------~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 208 -MT-------AKARALLRQALALDPANIRALSLLAFAAFEQGD-------YAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred -cc-------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHccc-------HHHHHHHHHHHHhcCCCCCc
Confidence 11 334456778899999999999988888777666 45666666777777565433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.40 E-value=3.5 Score=37.88 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc-----ccch-----hcHHHHHHHHHHHHHHHHhccCCChhH
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFF-----LETA-----FDADKIFSAAIDNFDAMMLKGNIYAPD 296 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~-----~~~a-----~eAe~L~~aA~dKY~AAl~~~n~~ap~ 296 (360)
-..++.+.|..|+.++|+.++++|+||..... +... ..-..+...|+.-|-.++..++.+..+
T Consensus 273 ~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~~ 345 (352)
T PF02259_consen 273 SSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYVRQ 345 (352)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCchHH
Confidence 36788999999999999999999999998877 2111 256788899999999999887764433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=88.38 E-value=15 Score=34.32 Aligned_cols=109 Identities=16% Similarity=0.088 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcc-cchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHh
Q 036322 230 ECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFL-ETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQR 308 (360)
Q Consensus 230 EaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~-~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqer 308 (360)
+|...|..|+.-|...=+. ..-.+++.+=|..+-.. ++...|-.+|.+|++=|+.-=. +....+.+.+-|.-+..+
T Consensus 92 ~Ai~~~~~A~~~y~~~G~~-~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~--~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 92 EAIECYEKAIEIYREAGRF-SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS--PHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHHHHHHHHHHCT-H-HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hhhHHHHHHHHHHHHHHh
Confidence 4445555555555432000 01135666666666665 7888888888888888873111 112234444444443322
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhhccCCC----chHHHHH-HHhhhhh
Q 036322 309 SRLRPRNSKEKVKLLQQARRLYQDALHMNSD----NLQVREA-LSSCMSE 353 (360)
Q Consensus 309 A~lr~~sskEk~~Ll~qA~~kye~ALrLdpd----~~qa~~A-l~~c~~e 353 (360)
. -+.+|+..|++++...-+ ...+.+. |..+++-
T Consensus 169 ~------------~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~ 206 (282)
T PF14938_consen 169 G------------RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCH 206 (282)
T ss_dssp T-------------HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHH
T ss_pred C------------CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 2 567778888777664322 2345443 4444443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=87.69 E-value=1.4 Score=24.62 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=26.2
Q ss_pred hHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc
Q 036322 295 PDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN 340 (360)
Q Consensus 295 p~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~ 340 (360)
|.++++.|..+.... -+++|+..|+.++.++|++
T Consensus 1 ~~~~~~~a~~~~~~~------------~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 1 AEALYNLGNAYLKLG------------DYDEALEYYEKALELDPNN 34 (34)
T ss_pred ChHHHHHHHHHHHHh------------hHHHHHHHHHHHHccCCCC
Confidence 467888888866553 3678889999999998864
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.22 E-value=18 Score=37.39 Aligned_cols=62 Identities=21% Similarity=0.206 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLD 211 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld 211 (360)
+|+.+|...+..+|+..++..-|||-+-.|||.-..| +-=++++... -.....+-.++..|-
T Consensus 53 KAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAI-RiHQ~L~~sp-dlT~~qr~lAl~qL~ 114 (389)
T COG2956 53 KAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAI-RIHQTLLESP-DLTFEQRLLALQQLG 114 (389)
T ss_pred hHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHH-HHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 6888999999999999999999999999999987321 1114555433 232344444555554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=86.80 E-value=2.6 Score=37.65 Aligned_cols=79 Identities=23% Similarity=0.280 Sum_probs=56.1
Q ss_pred CchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q 036322 251 NDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 251 ~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~ky 330 (360)
++.+++|.=|..+...|.-.+|.++|+..+++|- ...+.|+|++..|.++-.. .=+.+|+..|
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-----~s~~a~~A~l~la~a~y~~------------~~y~~A~~~~ 65 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYP-----NSPYAPQAQLMLAYAYYKQ------------GDYEEAIAAY 65 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-----TSTTHHHHHHHHHHHHHHT------------T-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CChHHHHHHHHHHHHHHHc------------CCHHHHHHHH
Confidence 4567888888888888876666666666666663 3457899999999986543 2477889999
Q ss_pred HHhhccCCCchHHHHH
Q 036322 331 QDALHMNSDNLQVREA 346 (360)
Q Consensus 331 e~ALrLdpd~~qa~~A 346 (360)
+.-++..|+++.+-.|
T Consensus 66 ~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 66 ERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHHHHH-TT-TTHHHH
T ss_pred HHHHHHCCCCcchhhH
Confidence 9999999999988777
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.26 E-value=17 Score=38.10 Aligned_cols=39 Identities=15% Similarity=0.062 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH
Q 036322 144 MILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL 182 (360)
Q Consensus 144 ~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl 182 (360)
.-|..|.-.|-+||+++|.+..|++-=|.+||.-|+.|.
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~ 90 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKA 90 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCcc
Confidence 346778888999999999999999999999999988874
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.96 E-value=1.9 Score=46.26 Aligned_cols=94 Identities=28% Similarity=0.231 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
|..|..-|+.||.-|..-+.||||-|+--- |---+.+|.+=|-. .|..|.|=.-.|-++|.+-
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e-------~~~~ldeald~f~k--------lh~il~nn~evl~qianiy-- 568 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAE-------ALGNLDEALDCFLK--------LHAILLNNAEVLVQIANIY-- 568 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHH-------HhcCHHHHHHHHHH--------HHHHHHhhHHHHHHHHHHH--
Confidence 456777888888888888888888886422 22223444443321 2344444444555555542
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
|-.+=-.||++.|-.|.-+=|++|+++--|.
T Consensus 569 ---e~led~aqaie~~~q~~slip~dp~ilskl~ 599 (840)
T KOG2003|consen 569 ---ELLEDPAQAIELLMQANSLIPNDPAILSKLA 599 (840)
T ss_pred ---HHhhCHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 2233345788888888889999999987654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.59 E-value=2.7 Score=38.63 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCCh-----HHHHHHHHHHHHHHHHhhccCCC
Q 036322 276 FSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNS-----KEKVKLLQQARRLYQDALHMNSD 339 (360)
Q Consensus 276 ~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ss-----kEk~~Ll~qA~~kye~ALrLdpd 339 (360)
+.+++..|..++...+. ...+++.||.....+-...+... ....+.+.+|+.+|-.||++.+.
T Consensus 274 ~~~~~~~~~~a~~~~~~-~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 274 SDEILKYYKEATKLDPS-WEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHHhChh-HHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 45578888888887553 36799999999999988776533 26788999999999999999998
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.15 E-value=2.4 Score=30.66 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHH
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDA 297 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~A 297 (360)
+..|-+-+..++.++|+++.++++=|..+...|.- .+|..=|+.++..++ ..|++
T Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~-------~~A~~~l~~~l~~~p-~~~~~ 65 (73)
T PF13371_consen 11 YEEALEVLERALELDPDDPELWLQRARCLFQLGRY-------EEALEDLERALELSP-DDPDA 65 (73)
T ss_pred HHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH-------HHHHHHHHHHHHHCC-CcHHH
Confidence 45677788999999999999999999999987774 444555555555544 33444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.97 E-value=25 Score=36.72 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH-----
Q 036322 231 CEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL----- 305 (360)
Q Consensus 231 aEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL----- 305 (360)
+-+-...|.+-|+.++..+|+.+.|+---|.---..+- + +-|..-|+..++.+- ++|+-++|-|+--
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~-P------E~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNN-P------EMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCC-h------HHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcc
Confidence 33556778889999999999999886321111111111 1 346677888998754 7899999998631
Q ss_pred -------HHhhhcCCCChHHHHHHH-------------HHHHHHHHHhhccCCCchHHHHHH
Q 036322 306 -------QQRSRLRPRNSKEKVKLL-------------QQARRLYQDALHMNSDNLQVREAL 347 (360)
Q Consensus 306 -------qerA~lr~~sskEk~~Ll-------------~qA~~kye~ALrLdpd~~qa~~Al 347 (360)
.+||.....++.++-.+| --|++||+=||.-||++.++++-|
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNL 435 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNL 435 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhH
Confidence 244443344456777776 469999999999999999998765
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=83.97 E-value=11 Score=30.60 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHH
Q 036322 150 ARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLR 189 (360)
Q Consensus 150 a~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr 189 (360)
+.-+.++++.+|+++.|.+.++-+|+..|+...-+..-|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~ 47 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLE 47 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4568899999999999999999999999988866655444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.94 E-value=8.2 Score=40.90 Aligned_cols=57 Identities=18% Similarity=0.098 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKR 205 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r 205 (360)
.+|++.|.+|+.++|.++.-..|+||||+.-|..+ +--+.|...+-+. |...+.|..
T Consensus 357 ~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~-eai~~L~~~~~~~-p~dp~~w~~ 413 (484)
T COG4783 357 KEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ-EAIRILNRYLFND-PEDPNGWDL 413 (484)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH-HHHHHHHHHhhcC-CCCchHHHH
Confidence 46889999999999999999999999999988887 3333454444332 433344433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.87 E-value=9.2 Score=40.02 Aligned_cols=91 Identities=24% Similarity=0.250 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChH
Q 036322 238 AGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSK 317 (360)
Q Consensus 238 AgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ssk 317 (360)
|--.|-+|++.||+.+.|+|-=|.+----|.+ ++|+--++..+++.+ + +--|-.||+.+ -
T Consensus 57 ALt~yHaAve~dp~~Y~aifrRaT~yLAmGks-------k~al~Dl~rVlelKp----D----F~~ARiQRg~v-----l 116 (504)
T KOG0624|consen 57 ALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS-------KAALQDLSRVLELKP----D----FMAARIQRGVV-----L 116 (504)
T ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC-------ccchhhHHHHHhcCc----c----HHHHHHHhchh-----h
Confidence 33479999999999999999988654332222 345666677777533 1 12233344331 2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 318 EKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 318 Ek~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
=|.--+++|..-|+.+|+-+|++..+.+|-+
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqs 147 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQS 147 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 2333578899999999999999888888743
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.78 E-value=72 Score=34.35 Aligned_cols=229 Identities=17% Similarity=0.179 Sum_probs=111.7
Q ss_pred cccccccccCCCCCcccchHHHHHHHHHHhhhhHHHHhhhhcCCchHHH-HHHH--------------------------
Q 036322 94 LRARESEISSSSSSKFIDDVMFDRYLTEANDLPKHAKECMKSGWDEERA-EMIL-------------------------- 146 (360)
Q Consensus 94 ~~~~~~e~~~~~s~~~~d~~~f~~~v~ea~~Llk~are~~~~~~De~~A-d~lL-------------------------- 146 (360)
+++.-.|++|-.+-+++-+.-|+-.--|-..+.+ |-.+..-...+ .-+|
T Consensus 173 l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq----~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn 248 (564)
T KOG1174|consen 173 LGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQ----MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY 248 (564)
T ss_pred HhhcchhhhhhhhhheecCCCccHHHHHHHHHHH----HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence 4566778877777777777767766666555554 33332222222 1111
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHH-HHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKL-RRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~L-r~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
-.|.-+|+++.-++|....+..-+|--|---|.+-. .+ .| -.+++-++.. ...+++.+---+.+|
T Consensus 249 ~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~-~~-~L~~~Lf~~~~~t----a~~wfV~~~~l~~~K-------- 314 (564)
T KOG1174|consen 249 FQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ-DS-ALMDYLFAKVKYT----ASHWFVHAQLLYDEK-------- 314 (564)
T ss_pred hHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh-HH-HHHHHHHhhhhcc----hhhhhhhhhhhhhhh--------
Confidence 145667778888888877777777722222222110 00 11 0111111110 111122111111111
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHH-------HHHHHHHh----ccCCCh
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAI-------DNFDAMML----KGNIYA 294 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~-------dKY~AAl~----~~n~~a 294 (360)
.+++-|-.+ ..+|+.+|+.|.||.==|.+|-..+...+|-=-|.+|+ +-|+-.+. .+.+-.
T Consensus 315 ----~~~rAL~~~----eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 315 ----KFERALNFV----EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred ----hHHHHHHHH----HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 122222222 23467799999999999999988555444433333332 11211111 011101
Q ss_pred hHHHhhHHHHH-HHhhh---cC------CC-ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH-hhhhhc
Q 036322 295 PDALFGWAVAL-QQRSR---LR------PR-NSKEKVKLLQQARRLYQDALHMNSDNLQVREALS-SCMSEL 354 (360)
Q Consensus 295 p~AL~NWGlAL-qerA~---lr------~~-sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~-~c~~el 354 (360)
.-++-||.+-+ ++-|+ |. +. ..+| .|+..|+++|+++|++.-|..++. -|..|=
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rE------KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMRE------KAKKFAEKSLKINPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHH------HHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence 12233555432 22222 11 11 1233 489999999999999999998864 355443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.30 E-value=3.5 Score=42.98 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREEL 180 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeL 180 (360)
+.+|+.||+++++..|-++.-.-|-+-|||..-..
T Consensus 113 y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~F 147 (536)
T KOG4648|consen 113 YEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSF 147 (536)
T ss_pred hhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHH
Confidence 34689999999999999999999999999965333
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=82.18 E-value=12 Score=36.73 Aligned_cols=92 Identities=14% Similarity=0.101 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
.|-+-|.+|+.++|.+-+.+.|.|-=|+..|+--.-+-. ++.++.+ |.. ...+. .+++. ..
T Consensus 87 ~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~-F~~Al~~--P~Y-~~~s~-------t~eN~--------G~ 147 (250)
T COG3063 87 LADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQ-FERALAD--PAY-GEPSD-------TLENL--------GL 147 (250)
T ss_pred hHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHH-HHHHHhC--CCC-CCcch-------hhhhh--------HH
Confidence 466789999999999999999999999998844322222 2223322 211 00000 11111 11
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHh
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYN 258 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYN 258 (360)
|.-=--=+..|-..|.++|++||+..-++--
T Consensus 148 Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~ 178 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALELDPQFPPALLE 178 (250)
T ss_pred HHhhcCCchhHHHHHHHHHHhCcCCChHHHH
Confidence 2110001455666899999999988776643
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=81.81 E-value=28 Score=28.70 Aligned_cols=57 Identities=18% Similarity=0.021 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGN 291 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n 291 (360)
+.+|-+-+..++.+||-+-.++.-=-.++...|...+|-+.|......+..-+...|
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 355666788999999999998887778888899999999999998888887776544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.33 E-value=6.4 Score=39.03 Aligned_cols=55 Identities=27% Similarity=0.350 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhc--------ccchhcH--HHHHHHHHHHHHHHH-hccCCChh
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFF--------LETAFDA--DKIFSAAIDNFDAMM-LKGNIYAP 295 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~--------~~~a~eA--e~L~~aA~dKY~AAl-~~~n~~ap 295 (360)
..|.++|...+++||.||- |.||-. |..+++| +.||.+=.|.|+-++ .+....-|
T Consensus 46 daAa~a~~~~L~ldp~D~~-----gaa~kLa~lg~~e~p~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP 111 (287)
T COG4976 46 DAAAAAYEEVLELDPEDHG-----GAALKLAVLGRGETPEKPPSAYVETLFDQYAERFDHILVDKLGYSVP 111 (287)
T ss_pred HHHHHHHHHHHcCCccccc-----chhhhHHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 4578899999999999985 333322 5556665 899999999999644 44343334
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 360 | |||
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 2e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 |
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 2e-06
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 9/129 (6%)
Query: 225 VDACEECEELLV--KAGRKYRLALSIDGNDVRALYNWGLALFFL---ETAFDADKIFSAA 279
+D E + +L+ + + + D L WG L L + DA ++ A
Sbjct: 6 MDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEA 65
Query: 280 IDNFD-AMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNS 338
I F+ A+++ +A++ A + L P ++ K A + +Q A+
Sbjct: 66 ITKFEEALLIDPK--KDEAVWCIGNAYTSFAFLTPDETEAKH-NFDLATQFFQQAVDEQP 122
Query: 339 DNLQVREAL 347
DN ++L
Sbjct: 123 DNTHYLKSL 131
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 60/414 (14%), Positives = 133/414 (32%), Gaps = 108/414 (26%)
Query: 2 ETNEYSYQNKRL--QFTNNHRDSVNMGHTNESE----TWESGDNLLDSVGFRVSWNHMEK 55
ET E+ YQ K + F + D+ + + + E D+++ M K
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII-----------MSK 58
Query: 56 NLVYRSSY----NREKDENQIYSSMLREEKVNPEDDSHLTDHLRARESEISSSSSSKFID 111
+ V + K E + + EE + + L ++ E S + +I+
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFV--EEVLRI-NYKFLMSPIKT-EQRQPSMMTRMYIE 114
Query: 112 --DVMFDRYLTEANDLPKHAKECMKSGWDEERAEMI--LHKSARLLSQA--IAMQHM--- 162
D ++ ND AK ++ R + L ++ L A + + +
Sbjct: 115 QRDRLY-------NDNQVFAK------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 163 --SLLAVDQLGNTYLVREELKLHFSCK-----LRRLLLEGDVISVEEQKRILKGLDYQFM 215
+ +A+D + +++ K L+ V+ E +++L +D +
Sbjct: 162 GKTWVALDVCLS-----YKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLYQIDPNWT 214
Query: 216 NKDKIASLLVDACEECEELLVK--AGRKYRLALSI-DGNDVRALYNWGLALFFLETAFD- 271
++ +S + + L + + Y L + +V+ W AF+
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--NVQNAKAW--------NAFNL 264
Query: 272 -------------ADKIFSAAIDNFDAMMLKGNIYAPDA--LFGWAVALQQRSRLRPRNS 316
D + +A + + + L L R + PR
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQDLPR-- 320
Query: 317 KEKVK-----------LLQQARRLYQDALHMNSDNLQVREALSSCMSELNHGDF 359
E + ++ + + H+N D L + S ++ L ++
Sbjct: 321 -EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEPAEY 371
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.42 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.37 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.23 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.23 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.21 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.19 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.15 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.12 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.08 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.04 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.02 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.02 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.01 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.0 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.99 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.98 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.96 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.96 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.95 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.93 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.92 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.9 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.88 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.88 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.88 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.87 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 98.86 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.85 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 98.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 98.83 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.8 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.8 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.79 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.79 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.78 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.76 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.76 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.75 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.74 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.73 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.73 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 98.73 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.7 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.67 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.67 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.67 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.65 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.65 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.64 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.63 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.58 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.58 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.57 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.56 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.56 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.56 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.56 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.55 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.55 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.55 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.54 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.53 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.52 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.52 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.52 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.49 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.49 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.48 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.47 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.46 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.46 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.46 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.45 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.45 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.45 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.43 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.42 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.42 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.42 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.4 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.4 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.39 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.38 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.38 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.37 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.37 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.37 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 98.36 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.34 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.33 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.33 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.29 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.29 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.29 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.27 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.27 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.27 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.25 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.24 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.24 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.23 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.22 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.21 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.19 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.19 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.17 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.17 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.16 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.15 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.15 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.11 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.1 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.1 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.09 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.09 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.07 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.06 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.05 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.03 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.02 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 97.99 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.97 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 97.96 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.94 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.91 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.9 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.89 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.84 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.84 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 97.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 97.8 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.8 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.8 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.76 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.74 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.73 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.73 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 97.72 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.72 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 97.7 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.7 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.68 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.66 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.61 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.6 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.58 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 97.49 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.49 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 97.47 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.45 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 97.45 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.45 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.39 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.37 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.34 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.29 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.26 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.25 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.25 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.18 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.16 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.14 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.03 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 96.95 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 96.83 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 96.78 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 96.75 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.75 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.69 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 96.63 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.57 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 96.52 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.43 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.31 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.06 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.86 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 95.72 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 95.67 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 95.54 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 95.25 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 95.22 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 95.2 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.1 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 94.53 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.49 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.47 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 94.36 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 93.76 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 93.57 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.03 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.78 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 91.4 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 91.22 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 90.03 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 89.57 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 89.03 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 85.45 |
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.7e-16 Score=133.84 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc---ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHh
Q 036322 232 EELLVKAGRKYRLALSIDGNDVRALYNWGLALFF---LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQR 308 (360)
Q Consensus 232 EeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~---~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqer 308 (360)
...+.+|.+.|++|++++|++.++++|||.+|.. ...+.+|-.++++|+.+|++++.+ ++..++||||.|+|+..+
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-dP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-DPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHh
Confidence 3568899999999999999999999999999998 456778889999999999999997 445799999999999999
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 309 SRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 309 A~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
.++.|+ ..+....+.+|+.+|++||.+||+++..+.+|..|.
T Consensus 94 g~l~P~-~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 94 AFLTPD-ETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHCCC-HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccCcc-hhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999998 567788999999999999999999999999998775
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-11 Score=101.69 Aligned_cols=175 Identities=15% Similarity=0.069 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHH---HHHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEE---QKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~---~~r~~~~ld~~~~~k~~~~~ 222 (360)
+.+|+..|.+|++++|.++.++.++|.+|...|+...-+. .++.++.-. |..... .+.++.........
T Consensus 21 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~------ 92 (217)
T 2pl2_A 21 YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE-NGKTLVART-PRYLGGYMVLSEAYVALYRQAED------ 92 (217)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSS------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhh------
Confidence 4578899999999999999999999999999988775433 344444433 332211 12222111000000
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHH
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWA 302 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWG 302 (360)
......-+.+|..-|+.|++++|++..+++|.|.++...|.. .+|++-|+.++.+. ..|+++++.|
T Consensus 93 -----~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 93 -----RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGER-------DKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred -----hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHhcc--cchHHHHHHH
Confidence 001114467888899999999999999999999999987774 45555566666654 5699999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 303 VALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 303 lALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
.++...- -+.+|+..|++||.++|+++.+...|..|-..+
T Consensus 159 ~~~~~~g------------~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 159 ELYLSMG------------RLDEALAQYAKALEQAPKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHT------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-
T ss_pred HHHHHcC------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 9976654 367889999999999999999998887775543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.7e-12 Score=99.00 Aligned_cols=122 Identities=22% Similarity=0.279 Sum_probs=99.7
Q ss_pred HHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHH
Q 036322 155 QAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEEL 234 (360)
Q Consensus 155 ~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeL 234 (360)
.+..++|...+++.|.||+|...|.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~------------------------------------------------------- 28 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGD------------------------------------------------------- 28 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTC-------------------------------------------------------
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCC-------------------------------------------------------
Confidence 4566899999999999999985322
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+.|..|++++|+++.+++|-|.++...|. |.+|++-|+.++.+.+ ..+.+|++.|.++..+-
T Consensus 29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~----- 95 (126)
T 4gco_A 29 YPTAMRHYNEAVKRDPENAILYSNRAACLTKLME-------FQRALDDCDTCIRLDS-KFIKGYIRKAACLVAMR----- 95 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc-------HHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHCC-----
Confidence 2456668999999999999999999999988776 5666777777777644 45899999999987664
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
-+.+|+..|++||.++|++++++..|..|.
T Consensus 96 -------~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 96 -------EWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp -------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred -------CHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 367899999999999999999999999995
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.34 E-value=5.3e-11 Score=94.15 Aligned_cols=157 Identities=14% Similarity=0.155 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|.+.|.+|++++|.++.++.++|.+|...|.....+.. +..++... |...... .. ++.
T Consensus 21 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~-~~~~~~~~-~~~~~~~--~~------------~~~--- 81 (184)
T 3vtx_A 21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIES-LKKFVVLD-TTSAEAY--YI------------LGS--- 81 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHC-CCCHHHH--HH------------HHH---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHhcC-chhHHHH--HH------------HHH---
Confidence 46789999999999999999999999999998887654332 22233222 2211100 00 000
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
+.....-+..|...|..|+.++|++..++++.|.++...|. |.+|++-|++++.+.+ ..++++++.|.++
T Consensus 82 --~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 82 --ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE-------HDKAIEAYEKTISIKP-GFIRAYQSIGLAY 151 (184)
T ss_dssp --HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred --HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC-------chhHHHHHHHHHHhcc-hhhhHHHHHHHHH
Confidence 11111224567778889999999999999999999988666 5667777777777644 4699999999998
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHH
Q 036322 306 QQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQV 343 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa 343 (360)
...-. +.+|+..|++||.++|+++..
T Consensus 152 ~~~g~------------~~~A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 152 EGKGL------------RDEAVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp HHTTC------------HHHHHHHHHHHHHTTHHHHHH
T ss_pred HHCCC------------HHHHHHHHHHHHhCCccCHHH
Confidence 76542 567999999999999998653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-11 Score=125.03 Aligned_cols=51 Identities=18% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHH
Q 036322 116 DRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELK 181 (360)
Q Consensus 116 ~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLK 181 (360)
+.+.+-|+-+.++++ +.+|+++|.+||+++|.+..|++|+|++|...|+..
T Consensus 10 ~al~nLG~~~~~~G~---------------~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~ 60 (723)
T 4gyw_A 10 DSLNNLANIKREQGN---------------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60 (723)
T ss_dssp HHHHHHHHHHHHTTC---------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 455555665555432 457889999999999999999999999998766554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-09 Score=89.75 Aligned_cols=179 Identities=7% Similarity=-0.004 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHcCc-CChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHH
Q 036322 146 LHKSARLLSQAIAMQH-MSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P-~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
+.+|...|.+|++++| .+..+.+++|.+|...|....-+.. +..++... |... .+.. .++.++
T Consensus 23 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~-p~~~----~~~~----------~l~~~~ 86 (228)
T 4i17_A 23 YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADY-FDIAIKKN-YNLA----NAYI----------GKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHTT-CSHH----HHHH----------HHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHH-HHHHHHhC-cchH----HHHH----------HHHHHH
Confidence 4678999999999999 9999999999999998887654332 33444332 3211 1111 122222
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCCch-------hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCC--hh
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGNDV-------RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIY--AP 295 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~d~-------~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~--ap 295 (360)
... .-+.+|...|..+++++|++. .++++-|..+...+. |.+|++-|+.++.+.+ . .+
T Consensus 87 ~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~ 153 (228)
T 4i17_A 87 RDM-----KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN-------IEKAEENYKHATDVTS-KKWKT 153 (228)
T ss_dssp HHT-----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHTTSSC-HHHHH
T ss_pred HHc-----ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc-------HHHHHHHHHHHHhcCC-CcccH
Confidence 221 234677889999999999999 668888888766655 5667777777777633 5 58
Q ss_pred HHHhhHHHHHHHhhhc--------CC-------CChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 296 DALFGWAVALQQRSRL--------RP-------RNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 296 ~AL~NWGlALqerA~l--------r~-------~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
.++++.|..+...+.. .+ .........+++|+..|++|+.++|+++.++..|.+....
T Consensus 154 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 154 DALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 9999999998777653 00 0013344566899999999999999999999998876543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-10 Score=101.20 Aligned_cols=103 Identities=15% Similarity=0.177 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHH
Q 036322 144 MILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 144 ~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
..+.+|+++|.+|++++|.+++++.|||++|+..|+.+.
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~----------------------------------------- 54 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHS----------------------------------------- 54 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSC-----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccch-----------------------------------------
Confidence 346789999999999999999999999999997665551
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcc----cchhcHHHHHHHHHHHHHHHHhccC
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFL----ETAFDADKIFSAAIDNFDAMMLKGN 291 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~----~~a~eAe~L~~aA~dKY~AAl~~~n 291 (360)
+.++.+++.+|...|.+||+++|+.++|+||.|+|+..- ....+|..-|.+|++-|++|+.+-+
T Consensus 55 ----g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 55 ----ISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ----hhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 112235688999999999999999999999999999762 2335677889999999999999744
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.3e-10 Score=93.04 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=114.2
Q ss_pred hhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhh----------------hhhhHHHHHHHHHHHHHH
Q 036322 124 DLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQ----------------LGNTYLVREELKLHFSCK 187 (360)
Q Consensus 124 ~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn----------------~GNalL~~GeLKl~~s~~ 187 (360)
.++.+|...+..|+ +.+|+.+|.+|++++|.++.++++ +|++|...|+...-+..
T Consensus 6 ~~~~~g~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~- 76 (208)
T 3urz_A 6 EMLQKVSAAIEAGQ--------NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF- 76 (208)
T ss_dssp HHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH-
T ss_pred HHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH-
Confidence 44555555544443 457889999999999999999999 99999988877654332
Q ss_pred HHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhccc
Q 036322 188 LRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLE 267 (360)
Q Consensus 188 Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~ 267 (360)
++.++.-. |..... . -.++.++... .-+.+|..-|..|++++|++..|++|-|.++...
T Consensus 77 ~~~al~~~-p~~~~~----~----------~~lg~~~~~~-----g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~- 135 (208)
T 3urz_A 77 YKELLQKA-PNNVDC----L----------EACAEMQVCR-----GQEKDALRMYEKILQLEADNLAANIFLGNYYYLT- 135 (208)
T ss_dssp HHHHHHHC-TTCHHH----H----------HHHHHHHHHH-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHC-CCCHHH----H----------HHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-
Confidence 33334332 322111 0 0122222211 2246777889999999999999999999887542
Q ss_pred chhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 036322 268 TAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREAL 347 (360)
Q Consensus 268 ~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al 347 (360)
.+.-...+..-|..++. +.....++|+.|+++... .-..+|+..|++||+++|+.. +...|
T Consensus 136 ----~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~------------~~~~~A~~~~~~al~l~P~~~-~~~~l 196 (208)
T 3urz_A 136 ----AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFT------------TRYEKARNSLQKVILRFPSTE-AQKTL 196 (208)
T ss_dssp ----HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHH------------HTHHHHHHHHHHHTTTSCCHH-HHHHH
T ss_pred ----hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCHH-HHHHH
Confidence 23334566777766554 221234778888886543 246889999999999999854 55555
Q ss_pred Hhh
Q 036322 348 SSC 350 (360)
Q Consensus 348 ~~c 350 (360)
..+
T Consensus 197 ~~i 199 (208)
T 3urz_A 197 DKI 199 (208)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-09 Score=102.79 Aligned_cols=176 Identities=18% Similarity=0.185 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.++|.+|++++|.+..+++++|++|...|....-+. .++.++.-. |. . .+.. .++.++..
T Consensus 120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~~~-p~-~----~~~~----------~lg~~~~~ 182 (474)
T 4abn_A 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHT-CFSGALTHC-KN-K----VSLQ----------NLSMVLRQ 182 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHTTC-CC-H----HHHH----------HHHHHHTT
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhC-CC-H----HHHH----------HHHHHHHH
Confidence 688999999999999999999999999999988775433 344444433 32 1 1111 11222221
Q ss_pred h----hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcc----cchhcHHHHHHHHHHHHHHHHhccCC--ChhH
Q 036322 227 A----CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFL----ETAFDADKIFSAAIDNFDAMMLKGNI--YAPD 296 (360)
Q Consensus 227 ~----~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~----~~a~eAe~L~~aA~dKY~AAl~~~n~--~ap~ 296 (360)
. ..+-..-+.+|.+.|+.|++++|++..+++|-|.++... +. ...-|.+|++-|++++.+.+. ..|.
T Consensus 183 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~ 259 (474)
T 4abn_A 183 LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ---NPKISQQALSAYAQAEKVDRKASSNPD 259 (474)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc---ccchHHHHHHHHHHHHHhCCCcccCHH
Confidence 1 122224568899999999999999999999999999762 11 113477888888888886331 5699
Q ss_pred HHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 297 ALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 297 AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
++++.|.++..+-. +.+|...|++|+.++|+++.+...+..|...+
T Consensus 260 ~~~~lg~~~~~~g~------------~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 260 LHLNRATLHKYEES------------YGEALEGFSQAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999877542 56799999999999999999998887776544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.19 E-value=4.3e-10 Score=105.79 Aligned_cols=171 Identities=8% Similarity=0.071 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHH-HHHHHHHHHHHHhccCCCcch---HHHHHHhhhhhhhhcchhHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREE-LKLHFSCKLRRLLLEGDVISV---EEQKRILKGLDYQFMNKDKIA 221 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~Ge-LKl~~s~~Lr~lla~~~p~s~---~~~~r~~~~ld~~~~~k~~~~ 221 (360)
+.+|+++|.+||+++|.+..++.++|++|...|+ ....+. .++.++.-. |... ..++.++..+
T Consensus 113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~-~~~~al~l~-P~~~~a~~~~g~~~~~~----------- 179 (382)
T 2h6f_A 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMN-YITAIIEEQ-PKNYQVWHHRRVLVEWL----------- 179 (382)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHC-TTCHHHHHHHHHHHHHH-----------
T ss_pred hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHH-HHHHHHHHC-CCCHHHHHHHHHHHHHc-----------
Confidence 3468899999999999999999999999999886 664433 234444332 3221 1222332222
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 222 SLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 222 ~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
.-+.+|..-|+.||+++|+++.|++|-|.++..-|. |.+|++-|++++.+ ++..+.|+++-
T Consensus 180 -----------g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~-------~~eAl~~~~~al~l-~P~~~~a~~~l 240 (382)
T 2h6f_A 180 -----------RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL-------WDNELQYVDQLLKE-DVRNNSVWNQR 240 (382)
T ss_dssp -----------TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------CTTHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred -----------cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 123567779999999999999999999999988665 35577777777776 44569999999
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 302 AVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 302 GlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
|.+|..+... ..+ .++..++..|++||.++|+++.+..-|..|...+
T Consensus 241 g~~l~~l~~~----~~e--A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~ 287 (382)
T 2h6f_A 241 YFVISNTTGY----NDR--AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR 287 (382)
T ss_dssp HHHHHHTTCS----CSH--HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCc----chH--HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHcc
Confidence 9998874321 123 3678889999999999999999988887776654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=96.63 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=99.9
Q ss_pred HHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHH
Q 036322 151 RLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEE 230 (360)
Q Consensus 151 ~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eE 230 (360)
..|.++++++|.++.+++++|.+|...|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~--------------------------------------------------- 51 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGR--------------------------------------------------- 51 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTC---------------------------------------------------
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCC---------------------------------------------------
Confidence 45788899999999999999988875322
Q ss_pred HHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 231 CEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 231 aEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
+.+|.+.|+.|++++|+++.+++|-|.++...+. |.+|++-|+.++.+.| ..|.+++|-|.++..+-+
T Consensus 52 ----~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-------~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 52 ----IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ-------FQQAADLYAVAFALGK-NDYTPVFHTGQCQLRLKA 119 (151)
T ss_dssp ----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc-------HHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCC
Confidence 2456668999999999999999999999988766 6778888888888644 569999999999887653
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 311 LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 311 lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
+..|+..|+.||.++|+.+....|
T Consensus 120 ------------~~eA~~~~~~al~l~~~~~~~~~A 143 (151)
T 3gyz_A 120 ------------PLKAKECFELVIQHSNDEKLKIKA 143 (151)
T ss_dssp ------------HHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHhCCCHHHHHHH
Confidence 678999999999999999855444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.7e-09 Score=87.33 Aligned_cols=183 Identities=18% Similarity=0.097 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHcCcCC---hHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMS---LLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s---~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~ 222 (360)
+.+|+..|.+++...|.+ ..|++++|.+|...|+...-+. .+..++... |.+. ....+.- .++.
T Consensus 31 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~-~~~~~l~~~-p~~~-~~~~a~~----------~lg~ 97 (261)
T 3qky_A 31 YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAAS-EYERFIQIY-QIDP-RVPQAEY----------ERAM 97 (261)
T ss_dssp HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCT-THHHHHH----------HHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHH-HHHHHHHHC-CCCc-hhHHHHH----------HHHH
Confidence 457889999999999999 9999999999999888765433 234444332 2110 0001100 0111
Q ss_pred HHHHhh---HHHHHHHHHHHHHHHHHhhhCCCchhhH-----------------HhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 223 LLVDAC---EECEELLVKAGRKYRLALSIDGNDVRAL-----------------YNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 223 aL~~~~---eEaEeLL~eAgrKY~~Al~~dp~d~~AL-----------------YNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
++.... ..-..-+.+|...|..+++.+|++..+. |+-|..+...|.-.+|...|..+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 111000 0002346778889999999999987776 77788777777766666666665555
Q ss_pred HHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 283 FDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 283 Y~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
|- .+...|+++++.|.++..+...... ..+..-+.+|+..|+.++.+.|+++.+..|..
T Consensus 178 ~p-----~~~~~~~a~~~l~~~~~~~g~~~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 236 (261)
T 3qky_A 178 YP-----DTPWADDALVGAMRAYIAYAEQSVR--ARQPERYRRAVELYERLLQIFPDSPLLRTAEE 236 (261)
T ss_dssp CT-----TSTTHHHHHHHHHHHHHHHHHTSCG--GGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CC-----CCchHHHHHHHHHHHHHHhcccchh--hcccchHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 42 2234689999999999888643221 23456789999999999999999988877743
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-09 Score=87.51 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRN 315 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~s 315 (360)
.+|.+.|..|++++|++..|+++.|.++...+. +.+|+.-|+.++.+.+ ..|+++++.|..+...-...
T Consensus 48 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~--- 116 (150)
T 4ga2_A 48 DLAKKYICTYINVQERDPKAHRFLGLLYELEEN-------TDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTD--- 116 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSS---
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc-------hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChH---
Confidence 456668999999999999999999999988776 4566666777777644 56999999999987765422
Q ss_pred hHHHHHHHHHHHHH-HHHhhccCCCchHHHHHHHhh
Q 036322 316 SKEKVKLLQQARRL-YQDALHMNSDNLQVREALSSC 350 (360)
Q Consensus 316 skEk~~Ll~qA~~k-ye~ALrLdpd~~qa~~Al~~c 350 (360)
.|... ++.|+.++|+++.+..-....
T Consensus 117 ---------~aa~~~~~~al~l~P~~~~~~~l~~~l 143 (150)
T 4ga2_A 117 ---------GRAKYWVERAAKLFPGSPAVYKLKEQL 143 (150)
T ss_dssp ---------SHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 23444 589999999999997765544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.6e-09 Score=85.94 Aligned_cols=184 Identities=10% Similarity=0.070 Sum_probs=128.0
Q ss_pred hhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHH
Q 036322 125 LPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQK 204 (360)
Q Consensus 125 Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~ 204 (360)
+++.|.-....++ +.+|.+.|.++++++|.++.++.++|.+|...|....-+. .+..++...+.+.. ..
T Consensus 6 ~~~~a~~~~~~~~--------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~--~~ 74 (272)
T 3u4t_A 6 EFRYADFLFKNNN--------YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQK-DIETYFSKVNATKA--KS 74 (272)
T ss_dssp HHHHHHHHHTTTC--------HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHH-HHHHHHTTSCTTTC--CH
T ss_pred HHHHHHHHHHhcC--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH-HHHHHHhccCchhH--HH
Confidence 4455555544443 4578899999999999999999999999999888775433 23444442111110 00
Q ss_pred HHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHH
Q 036322 205 RILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFD 284 (360)
Q Consensus 205 r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~ 284 (360)
.+. ..++..... ..-+.+|.+.|..+++++|++..++++-|.++...+. |.+|++-|+
T Consensus 75 ~~~----------~~lg~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~ 132 (272)
T 3u4t_A 75 ADF----------EYYGKILMK-----KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN-------FPLAIQYME 132 (272)
T ss_dssp HHH----------HHHHHHHHH-----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-------HHHHHHHHG
T ss_pred HHH----------HHHHHHHHH-----cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC-------HHHHHHHHH
Confidence 000 011111111 1235778889999999999999999999999988776 455666666
Q ss_pred HHHhccCCChhHHHhhHH-HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 285 AMMLKGNIYAPDALFGWA-VALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 285 AAl~~~n~~ap~AL~NWG-lALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
.++.+ ++..+.++++.| ..+... -+.+|+..|++++.++|+++.+...+..|...++
T Consensus 133 ~al~~-~~~~~~~~~~l~~~~~~~~-------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 190 (272)
T 3u4t_A 133 KQIRP-TTTDPKVFYELGQAYYYNK-------------EYVKADSSFVKVLELKPNIYIGYLWRARANAAQD 190 (272)
T ss_dssp GGCCS-SCCCHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred HHhhc-CCCcHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 66665 445689999999 776544 5788999999999999999998888877766554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-08 Score=88.34 Aligned_cols=106 Identities=20% Similarity=0.166 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHH---------------------------HHHHHHh
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAID---------------------------NFDAMML 288 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~d---------------------------KY~AAl~ 288 (360)
.+|.+.|..+++++|+...++++.|.++...|...+|..+|.+|++ -|+.++.
T Consensus 254 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555666677777777777777777776665554444444443332 2222222
Q ss_pred ccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 289 KGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 289 ~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
+.+ ..+.++++.|..+...- -+..|+..|++|+.++|+++.+...|..|..++
T Consensus 334 ~~p-~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 334 VFP-EFAAAHSNLASVLQQQG------------KLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp SCT-TCHHHHHHHHHHHHTTT------------CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred cCC-CcHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 211 22444555444443322 135677778888888888888887777766554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-09 Score=86.25 Aligned_cols=127 Identities=14% Similarity=0.082 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhH
Q 036322 150 ARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACE 229 (360)
Q Consensus 150 a~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~e 229 (360)
...|.+|++++|.+..+++++|.+|...|+
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~-------------------------------------------------- 36 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGX-------------------------------------------------- 36 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTC--------------------------------------------------
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCC--------------------------------------------------
Confidence 356889999999999999999988775322
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 230 ECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 230 EaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
+.+|...|+.++.++|+++.++++=|.++...+. |.+|++-|+.++.+.+ ..|.++++-|.++..+-
T Consensus 37 -----~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 37 -----YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ-------YDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQXG 103 (148)
T ss_dssp -----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTT
T ss_pred -----hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 1345567889999999999999999998887666 4566666777777644 46899999999987665
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 310 RLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 310 ~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
. +.+|+..|+.||.++|++|+.......|.
T Consensus 104 ~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 133 (148)
T 2vgx_A 104 E------------LAEAESGLFLAQELIANXPEFXELSTRVS 133 (148)
T ss_dssp C------------HHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred C------------HHHHHHHHHHHHHHCcCCCcchHHHHHHH
Confidence 3 46788999999999999887655544443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=3.9e-08 Score=86.20 Aligned_cols=36 Identities=6% Similarity=0.066 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL 182 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl 182 (360)
.+|.+.|.+|+.++|....++.++|.+|...|....
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHH
Confidence 456666777777777777777777777766665543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.8e-08 Score=83.70 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhhhCCC--chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 234 LLVKAGRKYRLALSIDGN--DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~--d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
-+.+|.+.|..+++++|+ +..++++.|.++...+...+|..+|. .++.+.+ ..+.++++.|.++...-
T Consensus 192 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------~al~~~p-~~~~~~~~l~~~~~~~g-- 261 (365)
T 4eqf_A 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN-------AALTVRP-EDYSLWNRLGATLANGD-- 261 (365)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHH-------HHHHHCT-TCHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHH-------HHHHhCC-CCHHHHHHHHHHHHHcC--
Confidence 467788889999999999 89999999999888776555555544 4444433 35899999999987643
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
-+.+|+..|++|+.++|+++.+...|..|-..+
T Consensus 262 ----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 262 ----------RSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 294 (365)
T ss_dssp ----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 356788899999999999999988887776544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.99 E-value=9.9e-09 Score=84.45 Aligned_cols=173 Identities=12% Similarity=0.018 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHH-HHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIA-SLL 224 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~-~aL 224 (360)
+.+|.+.|.+|++++|.+..++.++|++|...|....-+. .++.++.- .|.....+ . .++ ...
T Consensus 90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~-~~~~~~~~----~----------~l~~~~~ 153 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ-YMEKQIRP-TTTDPKVF----Y----------ELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH-HHGGGCCS-SCCCHHHH----H----------HHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHH-HHHHHhhc-CCCcHHHH----H----------HHHHHHH
Confidence 3588999999999999999999999999999887764333 23334433 23322111 1 111 111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccc---hhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLET---AFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~---a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
.. .-+.+|.+-|..+++++|++..++++.|.++..-+. -.+|...|..|++.+...-...+....++|++.
T Consensus 154 ~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 227 (272)
T 3u4t_A 154 YN------KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227 (272)
T ss_dssp HT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HH------HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 10 146778889999999999999999999999887544 555777777777766421110000123688888
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 302 AVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 302 GlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
|..+.... -+++|+..|++|+.++|++++|+..|.....
T Consensus 228 ~~~~~~~~------------~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 228 AYYYTINR------------DKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHcC------------CHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 88875532 3678999999999999999999999876544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.6e-08 Score=91.39 Aligned_cols=214 Identities=12% Similarity=0.044 Sum_probs=149.0
Q ss_pred HHHHHHHHhhhhHHHHhhhhcCCchH------HHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHH-HHHHHHH
Q 036322 115 FDRYLTEANDLPKHAKECMKSGWDEE------RAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREEL-KLHFSCK 187 (360)
Q Consensus 115 f~~~v~ea~~Llk~are~~~~~~De~------~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeL-Kl~~s~~ 187 (360)
|+.+-.....|....+.......... ....-+.++.+.+.++....|.+..+++++|.+|...|+. ..-+ ..
T Consensus 47 ~~~l~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~-~~ 125 (474)
T 4abn_A 47 LQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAE-VL 125 (474)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHH-HH
Confidence 55555555555555554444333222 4466688888999999999999999999999999998887 5332 23
Q ss_pred HHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcc-
Q 036322 188 LRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFL- 266 (360)
Q Consensus 188 Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~- 266 (360)
++.++.-. |.... +.. .++.++.. ..-+.+|.+.|..|++++|+ +.+++|.|.++...
T Consensus 126 ~~~al~~~-p~~~~----a~~----------~lg~~~~~-----~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~ 184 (474)
T 4abn_A 126 LSKAVKLE-PELVE----AWN----------QLGEVYWK-----KGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQ 184 (474)
T ss_dssp HHHHHHHC-TTCHH----HHH----------HHHHHHHH-----HTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCC
T ss_pred HHHHHhhC-CCCHH----HHH----------HHHHHHHH-----cCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhc
Confidence 44444332 32211 111 11222221 12357788899999999999 79999999999883
Q ss_pred -cchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCC---CchH
Q 036322 267 -ETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNS---DNLQ 342 (360)
Q Consensus 267 -~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdp---d~~q 342 (360)
+...+...-|.+|++-|++++.+.+ ..+.++++.|.++..+.-.... ...-+.+|+..|++|+.++| +++.
T Consensus 185 ~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~ 259 (474)
T 4abn_A 185 TDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQ----NPKISQQALSAYAQAEKVDRKASSNPD 259 (474)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred cCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhcc----ccchHHHHHHHHHHHHHhCCCcccCHH
Confidence 4444555678899999999998744 5689999999999877322222 22468899999999999999 9999
Q ss_pred HHHHHHhhhhhcc
Q 036322 343 VREALSSCMSELN 355 (360)
Q Consensus 343 a~~Al~~c~~el~ 355 (360)
+...|..|-..+.
T Consensus 260 ~~~~lg~~~~~~g 272 (474)
T 4abn_A 260 LHLNRATLHKYEE 272 (474)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 9988887765543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-07 Score=79.33 Aligned_cols=101 Identities=19% Similarity=0.137 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhhhCCCchh----hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 235 LVKAGRKYRLALSIDGNDVR----ALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~----ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
+.+|.+.|..+++.+|++.. ++++-|.++...+.-. +|++-|+.++.. ++..|.++++.|..+....
T Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-------~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g- 320 (359)
T 3ieg_A 250 YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV-------EAIRICSEVLQM-EPDNVNALKDRAEAYLIEE- 320 (359)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHH-------HHHHHHHHHHHh-CcccHHHHHHHHHHHHHcC-
Confidence 56788889999999999874 4555566665566644 455555555554 3345899999999986543
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 311 LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 311 lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+.+|+..|+.|+.++|+++.+...|..|...+.
T Consensus 321 -----------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 321 -----------MYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp -----------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 3678999999999999999999999998876553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-09 Score=84.12 Aligned_cols=129 Identities=15% Similarity=0.085 Sum_probs=97.7
Q ss_pred HHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhH
Q 036322 150 ARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACE 229 (360)
Q Consensus 150 a~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~e 229 (360)
...|.+++.++|.+..+++++|.+|+..|.
T Consensus 4 ~~~l~~al~~~p~~~~~~~~~a~~~~~~g~-------------------------------------------------- 33 (142)
T 2xcb_A 4 GGTLAMLRGLSEDTLEQLYALGFNQYQAGK-------------------------------------------------- 33 (142)
T ss_dssp -----CCTTCCHHHHHHHHHHHHHHHHTTC--------------------------------------------------
T ss_pred chhHHHHHcCCHHHHHHHHHHHHHHHHHcc--------------------------------------------------
Confidence 357888999999999999999977764322
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 230 ECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 230 EaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
+.+|.+.|..++..+|+++.++++-|.++...+. |.+|+.-|+.++.+.+ ..|.++++-|.++..+-
T Consensus 34 -----~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 34 -----WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL-------YEQALQSYSYGALMDI-NEPRFPFHAAECHLQLG 100 (142)
T ss_dssp -----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcC
Confidence 2345567889999999999999999999887666 4566666666676644 56999999999987664
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 310 RLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 310 ~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
. +.+|+..|+.|+.++|++++.......|..-
T Consensus 101 ~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 132 (142)
T 2xcb_A 101 D------------LDGAESGFYSARALAAAQPAHEALAARAGAM 132 (142)
T ss_dssp C------------HHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred C------------HHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 3 5678999999999999999887776666543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.9e-08 Score=77.30 Aligned_cols=185 Identities=16% Similarity=0.054 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHcCcCC-------hHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch-HHHH---HHhhhhhhhh
Q 036322 146 LHKSARLLSQAIAMQHMS-------LLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV-EEQK---RILKGLDYQF 214 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s-------~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~-~~~~---r~~~~ld~~~ 214 (360)
+.+|.+.|.+++++.|.. ..++.++|.+|...|....-+. -+..++.-.+.... ...+ .+..-++.-+
T Consensus 54 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 132 (258)
T 3uq3_A 54 YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE-YYQKSLTEHRTADILTKLRNAEKELKKAEAEA 132 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHhcCchhHHHHHHhHHHHHHHHHHHHH
Confidence 457888999999999987 7999999999999888765432 23333332211000 0000 0011111000
Q ss_pred cchhHHHHHHHHhhH--HHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCC
Q 036322 215 MNKDKIASLLVDACE--ECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNI 292 (360)
Q Consensus 215 ~~k~~~~~aL~~~~e--EaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~ 292 (360)
........+....+. .-..-+.+|.+.|..+++++|++..++++.|.++...+.-.+|...|..| +...+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-------l~~~~- 204 (258)
T 3uq3_A 133 YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA-------IEKDP- 204 (258)
T ss_dssp HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------HHHCT-
T ss_pred HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH-------HHhCH-
Confidence 000001111111111 11123677888999999999999999999999998877755555555555 44433
Q ss_pred ChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccC------CCchHHHHHHHhhh
Q 036322 293 YAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMN------SDNLQVREALSSCM 351 (360)
Q Consensus 293 ~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLd------pd~~qa~~Al~~c~ 351 (360)
..+.++++.|.++..+- -+++|+..|+.|+.++ |+++.+...|..|.
T Consensus 205 ~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVK------------EYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp TCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 45899999999987663 2467888888888888 99999999999884
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-07 Score=79.67 Aligned_cols=182 Identities=13% Similarity=0.052 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.+.|.+|++++|.++.++.++|.+|...|....-+. .++.++.-. |......... ..+.. ......... .+.
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~-~~~~~~~~~~-~~~~~-~~~~~~~~~-~~~ 189 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACE-ILRDWLRYT-PAYAHLVTPA-EEGAG-GAGLGPSKR-ILG 189 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTS-TTTGGGCC-----------------C-TTH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-cCcHHHHHHH-HHHhh-hhcccHHHH-HHH
Confidence 356666777777777777777777777666665543222 222223221 1111000000 00000 000000000 011
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCC--chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGN--DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~--d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
.+- ...-+.+|...|..+++++|+ +..++++-|.++...|.-.+|..+|..|+ .+.+ ..+.++++.|..
T Consensus 190 ~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------~~~~-~~~~~~~~l~~~ 260 (368)
T 1fch_A 190 SLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL-------SVRP-NDYLLWNKLGAT 260 (368)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCT-TCHHHHHHHHHH
T ss_pred HHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCc-CCHHHHHHHHHH
Confidence 111 234567888899999999999 89999999999888777555555555544 4333 458999999998
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 305 LQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 305 LqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
+...- -+.+|+..|++++.++|+++.+...|..|-..+
T Consensus 261 ~~~~g------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 261 LANGN------------QSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHcC------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 76543 267788899999999999999888887775543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.6e-08 Score=80.60 Aligned_cols=117 Identities=21% Similarity=0.190 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhc-cCCChhHHHhhHHHHHHHhhh---
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLK-GNIYAPDALFGWAVALQQRSR--- 310 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~-~n~~ap~AL~NWGlALqerA~--- 310 (360)
+.+|.+.|..+++++|++..++++-|.++...+.-.+|...|..|++.+...-.. .....+.++++.|..+...-.
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 5678888999999999999999999999998888777777777777654211110 001123455555544433322
Q ss_pred ----------cCCCChH---------HHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 311 ----------LRPRNSK---------EKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 311 ----------lr~~ssk---------Ek~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
+.|.+.. .+..-+..|+..|++|+.++|+++.+...|..|.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 0111100 1112356788888888888888888888888876
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=8.1e-09 Score=105.71 Aligned_cols=156 Identities=17% Similarity=0.133 Sum_probs=119.5
Q ss_pred cCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHH
Q 036322 159 MQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKA 238 (360)
Q Consensus 159 ~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eA 238 (360)
-.|.+.+|+.|||++|...|++..-+.. ++.++.-. |..... --+++.++...+ -+.+|
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~-~~kAl~l~-P~~~~a--------------~~nLg~~l~~~g-----~~~eA 62 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRL-YRKALEVF-PEFAAA--------------HSNLASVLQQQG-----KLQEA 62 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHC-SCCHHH--------------HHHHHHHHHHTT-----CHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhC-CCCHHH--------------HHHHHHHHHHcC-----CHHHH
Confidence 4699999999999999999998765432 34444332 322111 112344444332 25677
Q ss_pred HHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHH
Q 036322 239 GRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKE 318 (360)
Q Consensus 239 grKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskE 318 (360)
...|++|++++|++.+|++|.|.++...+. +.+|++-|++++++.+ ..++|++|.|.++.++-+
T Consensus 63 ~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~-------~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~-------- 126 (723)
T 4gyw_A 63 LMHYKEAIRISPTFADAYSNMGNTLKEMQD-------VQGALQCYTRAIQINP-AFADAHSNLASIHKDSGN-------- 126 (723)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC--------
Confidence 889999999999999999999999998665 6789999999999744 569999999999987653
Q ss_pred HHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 319 KVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 319 k~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
+++|+..|++||.++|+++.+...|..|...+.
T Consensus 127 ----~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 127 ----IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp ----HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence 678999999999999999999999998876654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.2e-08 Score=78.53 Aligned_cols=117 Identities=11% Similarity=0.099 Sum_probs=89.4
Q ss_pred chHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 036322 111 DDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRR 190 (360)
Q Consensus 111 d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~ 190 (360)
|.+.-+.+.+.|+.+.++++ +.+|+++|.+||+++|.++.++.++|.+|...|+.
T Consensus 9 nP~~a~~~~~~G~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~---------- 63 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGD---------------YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF---------- 63 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------
T ss_pred CHHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH----------
Confidence 44445566666666666432 56789999999999999999999999988854322
Q ss_pred HhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchh
Q 036322 191 LLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAF 270 (360)
Q Consensus 191 lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~ 270 (360)
.+|..-|..||+++|+..++++|.|.++..-+.
T Consensus 64 ---------------------------------------------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-- 96 (126)
T 4gco_A 64 ---------------------------------------------QRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE-- 96 (126)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred ---------------------------------------------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCC--
Confidence 334457888999999999999999999988766
Q ss_pred cHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 271 DADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 271 eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
|.+|++-|+.++.+-| ..++|+.+-|.+|
T Consensus 97 -----~~~A~~~~~~al~l~P-~~~~a~~~l~~~l 125 (126)
T 4gco_A 97 -----WSKAQRAYEDALQVDP-SNEEAREGVRNCL 125 (126)
T ss_dssp -----HHHHHHHHHHHHHHCT-TCHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHHCc-CCHHHHHHHHHhc
Confidence 5667777777777633 5689988887764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-07 Score=82.33 Aligned_cols=104 Identities=10% Similarity=0.023 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+-|..|+..+|++..+++++|..+...|...+|..+|..|+.... +.+...+..+.+|+..+....
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~----l~p~~~~~l~~~~~~~~~~~g----- 255 (308)
T 2ond_A 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS----LPPEKSGEIWARFLAFESNIG----- 255 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS----SCGGGCHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHHcC-----
Confidence 45677889999999999999999999999888887778777777665320 122235678899998876543
Q ss_pred ChHHHHHHHHHHHHHHHH---------------hhccCCCchHHHHHH
Q 036322 315 NSKEKVKLLQQARRLYQD---------------ALHMNSDNLQVREAL 347 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~---------------ALrLdpd~~qa~~Al 347 (360)
+..+...++++|...+-+ .+.++|++++++++|
T Consensus 256 ~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~r~~~l~~~P~~~~~ln~l 303 (308)
T 2ond_A 256 DLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYPCSASELKAL 303 (308)
T ss_dssp CHHHHHHHHHHHHHHTTTTTSSCHHHHHHTTTCBTTBCSSCHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcccccccchHHHHHHHHHhcccCCCCHHHHHhc
Confidence 245556666666666543 355777777777765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-07 Score=83.21 Aligned_cols=163 Identities=12% Similarity=-0.040 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHcCc------CChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHH
Q 036322 147 HKSARLLSQAIAMQH------MSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKI 220 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P------~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~ 220 (360)
.+|+.+|.+|+++.| .-..++.|+|++|...|+...-+.. ++.++.-. .. .......
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~-~~~Al~l~------------~~----~g~~~~~ 116 (292)
T 1qqe_A 54 NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS-LENAIQIF------------TH----RGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHH------------HH----TTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHH------------HH----cCCHHHH
Confidence 456677778887743 2367999999999988877654322 11111100 00 0001112
Q ss_pred HHHHHHhhHHHHHH---HHHHHHHHHHHhhhCCCc------hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccC
Q 036322 221 ASLLVDACEECEEL---LVKAGRKYRLALSIDGND------VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGN 291 (360)
Q Consensus 221 ~~aL~~~~eEaEeL---L~eAgrKY~~Al~~dp~d------~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n 291 (360)
+.++...+.-.+.. +.+|.+.|+.|+++.|++ ..+++|.|.++...|.- .+|++-|+.++.+.+
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY-------IEASDIYSKLIKSSM 189 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHh
Confidence 22333333333332 677888999999988865 56789999999887774 455555665555432
Q ss_pred CC------hhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 292 IY------APDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 292 ~~------ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
.. ...+|++.|+.+..+- -..+|+..|++++.++|+++.+.+
T Consensus 190 ~~~~~~~~~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 190 GNRLSQWSLKDYFLKKGLCQLAAT------------DAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTT------------CHHHHHHHHHGGGCC---------
T ss_pred cCCcccHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCCCCCcHH
Confidence 21 1247889998876543 257889999999999999887643
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-06 Score=70.88 Aligned_cols=203 Identities=9% Similarity=0.040 Sum_probs=126.5
Q ss_pred HHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHh---ccCCC
Q 036322 121 EANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLL---LEGDV 197 (360)
Q Consensus 121 ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~ll---a~~~p 197 (360)
.+..+...|..++..++ +.+|.+.|.+++.++ .++.++.++|.+|...|....-+.. ++.++ +...|
T Consensus 4 ~a~~~~~~g~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~-~~~a~~~~~~~~~ 73 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQ--------FDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAIST-LNDAVEQGREMRA 73 (258)
T ss_dssp HHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHH-HHHHHHhCccccc
Confidence 34455555555554443 457888999999999 9999999999999999877654322 22222 22211
Q ss_pred cchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHH------------HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc
Q 036322 198 ISVEEQKRILKGLDYQFMNKDKIASLLVDACEECE------------ELLVKAGRKYRLALSIDGNDVRALYNWGLALFF 265 (360)
Q Consensus 198 ~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaE------------eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~ 265 (360)
. ......+...+-.-.....+...|+. ....+- .-+.+|.+.|..++..+|++..++++-|.++..
T Consensus 74 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 74 D-YKVISKSFARIGNAYHKLGDLKKTIE-YYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp C-HHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 1 11111111111100000011111111 111111 224556667888888999999999999999988
Q ss_pred ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 266 LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 266 ~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
.+.-.+|...| +.++...+ ..+.++++.|..+...- -+..|+..|+.++.++|+++.+..
T Consensus 152 ~~~~~~A~~~~-------~~a~~~~~-~~~~~~~~l~~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~ 211 (258)
T 3uq3_A 152 KSDWPNAVKAY-------TEMIKRAP-EDARGYSNRAAALAKLM------------SFPEAIADCNKAIEKDPNFVRAYI 211 (258)
T ss_dssp TTCHHHHHHHH-------HHHHHHCT-TCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hcCHHHHHHHH-------HHHHhcCc-ccHHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHhCHHHHHHHH
Confidence 77755555544 44444433 35899999999976543 256789999999999999999998
Q ss_pred HHHhhhhhcc
Q 036322 346 ALSSCMSELN 355 (360)
Q Consensus 346 Al~~c~~el~ 355 (360)
.+..|-..++
T Consensus 212 ~l~~~~~~~g 221 (258)
T 3uq3_A 212 RKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 8887765543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-07 Score=85.79 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh----
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR---- 310 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~---- 310 (360)
+.+|.+-|..+++++|++..++++.|.++...|...+|.++|.++++.+... ...+...+.++++.|.++...-.
T Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT-QSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc-ccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 5667777888888888888888888888888777777777777776654311 00010113455555555443322
Q ss_pred ---------cCCCChH---------HHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 311 ---------LRPRNSK---------EKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 311 ---------lr~~ssk---------Ek~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
+.|.+.. .+..-+++|+..|++++.++|+++.+...|..|-.
T Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 1111110 01112567788888888888888888888877754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-07 Score=82.29 Aligned_cols=100 Identities=19% Similarity=0.146 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhhCCCch----hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 234 LLVKAGRKYRLALSIDGNDV----RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~----~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
-+.+|.+-|..+++++|++. .++++.|.++...|.-.+|..++. .++.+.+ ..+.++++.|.++...-
T Consensus 272 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------~a~~~~p-~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 272 RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS-------EVLQMEP-DNVNALKDRAEAYLIEE 343 (450)
T ss_dssp CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH-------HHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH-------HHHHhCc-ccHHHHHHHHHHHHHhc
Confidence 35778889999999999984 488888988888777555555544 4444433 45899999999986543
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 310 RLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 310 ~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
-+++|+..|+.|+.++|+++.+...|..|...
T Consensus 344 ------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 344 ------------MYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp ------------CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 36789999999999999999999999876443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.84 E-value=4.3e-08 Score=92.25 Aligned_cols=171 Identities=9% Similarity=-0.020 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch---HHHHHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV---EEQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~---~~~~r~~~~ld~~~~~k~~~~~ 222 (360)
+.+|+++|.+||+++|.+..+++++|.+|...|+...-+. .++.++.-. |... ..++.++..+
T Consensus 148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~-~~~kal~ld-P~~~~a~~~lg~~~~~~------------ 213 (382)
T 2h6f_A 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE-FIADILNQD-AKNYHAWQHRQWVIQEF------------ 213 (382)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH-HHHHHHHHC-TTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhC-ccCHHHHHHHHHHHHHc------------
Confidence 6789999999999999999999999999999887765433 234444332 3221 1122222211
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc-ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF-LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~-~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
..+.+|...|..||+++|++..|++|-|.++.. .+... ++++..+++-|+.++.+.+ ..+.++++.
T Consensus 214 ----------g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~--eA~~~~el~~~~~Al~l~P-~~~~a~~~l 280 (382)
T 2h6f_A 214 ----------KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND--RAVLEREVQYTLEMIKLVP-HNESAWNYL 280 (382)
T ss_dssp ----------TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS--HHHHHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred ----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch--HHHHHHHHHHHHHHHHHCC-CCHHHHHHH
Confidence 124567889999999999999999999999988 44322 3446677888999998744 458999999
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 302 AVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 302 GlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
|..|..+.. . -+..|+..++++ .++|+++.++..|..|..++
T Consensus 281 ~~ll~~~g~---~-------~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 281 KGILQDRGL---S-------KYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHTTTCG---G-------GCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHccCc---c-------chHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 999877331 0 123356667776 89999999999999888765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-07 Score=84.47 Aligned_cols=184 Identities=11% Similarity=-0.047 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH--HHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL--HFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl--~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
.+|..+|.+|++++|.++++..++|+++...|.... +....++.++.-. |..... .. .++-.+
T Consensus 155 ~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~--~~------------~l~~~~ 219 (472)
T 4g1t_A 155 ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYL--KV------------LLALKL 219 (472)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHH--HH------------HHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHH--HH------------HHHHHH
Confidence 479999999999999999999999999887665431 1112233333222 221111 11 111111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
..+. ....-+.+|.+.|..|+.++|+...+++|-|.++...+.. .+|++-|+.++...| ..+.++++-|..
T Consensus 220 ~~~~-~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~-------~~A~~~~~~al~~~p-~~~~~~~~lg~~ 290 (472)
T 4g1t_A 220 HKMR-EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEP-------DKAIELLKKALEYIP-NNAYLHCQIGCC 290 (472)
T ss_dssp HHCC-------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHST-TCHHHHHHHHHH
T ss_pred HHHH-hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCch-------HHHHHHHHHHHHhCC-ChHHHHHHHHHH
Confidence 1111 1122345677788999999999999999999998887764 455555566666533 568999999988
Q ss_pred HHHhhh-------cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 305 LQQRSR-------LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 305 LqerA~-------lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
+..... ..............+|+..|++|+.++|+++.+...+..|-..+
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh
Confidence 754322 12223345566788899999999999998887777666655443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2.8e-07 Score=78.85 Aligned_cols=169 Identities=14% Similarity=0.066 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHcCcCChHHHh----------------hhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhh
Q 036322 147 HKSARLLSQAIAMQHMSLLAVD----------------QLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGL 210 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avg----------------n~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~l 210 (360)
.+|.+.|.+++.+.|.+..++. ++|..+ ..|....-+. -++.++... |... ...+..
T Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~-~~~~a~~~~-p~~~--~~~~~~-- 221 (368)
T 1fch_A 149 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKE-LFLAAVRLD-PTSI--DPDVQC-- 221 (368)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHH-HHHHHHHHS-TTSC--CHHHHH--
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHH-HHHHHHHhC-cCcc--cHHHHH--
Confidence 5788999999999999998887 677665 6665543322 233333332 2200 001111
Q ss_pred hhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc
Q 036322 211 DYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG 290 (360)
Q Consensus 211 d~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~ 290 (360)
.++..+... .-+.+|.+.|..++.++|++..++++-|.++...|...+|...|..| +.+.
T Consensus 222 --------~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------l~~~ 281 (368)
T 1fch_A 222 --------GLGVLFNLS-----GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA-------LELQ 281 (368)
T ss_dssp --------HHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------HHHC
T ss_pred --------HHHHHHHHc-----CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhC
Confidence 112222211 22466777889999999999999999999998888755555555554 4443
Q ss_pred CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc-----------hHHHHHHHhhhhhcc
Q 036322 291 NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN-----------LQVREALSSCMSELN 355 (360)
Q Consensus 291 n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~-----------~qa~~Al~~c~~el~ 355 (360)
+ ..+.++++.|.++..+- -+..|+..|+.|+.++|++ +.+...|..|-..+.
T Consensus 282 ~-~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 282 P-GYIRSRYNLGISCINLG------------AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp T-TCHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred C-CcHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 3 45899999999986654 3667888899999999988 788888888776654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-07 Score=80.89 Aligned_cols=186 Identities=12% Similarity=0.037 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcc---h--------------------HH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVIS---V--------------------EE 202 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s---~--------------------~~ 202 (360)
+.+|.+.|.+|++++|.+..++.++|++|...|....-+. .++.++.-. |.. . ..
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (365)
T 4eqf_A 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACE-ALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSV 192 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-HHHHCC-------------------CCHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHH-HHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhh
Confidence 4578889999999999999999999999999887764332 122222211 110 0 00
Q ss_pred HHHHhhhhhhh---hcchhHHHHHHHHhh--HHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHH
Q 036322 203 QKRILKGLDYQ---FMNKDKIASLLVDAC--EECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFS 277 (360)
Q Consensus 203 ~~r~~~~ld~~---~~~k~~~~~aL~~~~--eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~ 277 (360)
...+..-++.- .+... -..++...+ -.-..-+.+|.+.|..+++++|++..++++.|.++...|.-.+|...|.
T Consensus 193 ~~~A~~~~~~al~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMI-DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 01111101000 00000 001111111 1111235778889999999999999999999999998777555555555
Q ss_pred HHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc------------hHHHH
Q 036322 278 AAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN------------LQVRE 345 (360)
Q Consensus 278 aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~------------~qa~~ 345 (360)
. ++.+.+ ..+.++++.|.++..+-. +.+|+..|+.|+.++|+. ..+..
T Consensus 272 ~-------al~~~p-~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 331 (365)
T 4eqf_A 272 R-------ALEIQP-GFIRSRYNLGISCINLGA------------YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWA 331 (365)
T ss_dssp H-------HHHHCT-TCHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHHHCC------------CHHHH
T ss_pred H-------HHhcCC-CchHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHH
Confidence 4 444433 458999999999876643 456788888888888873 55666
Q ss_pred HHHhhhhhc
Q 036322 346 ALSSCMSEL 354 (360)
Q Consensus 346 Al~~c~~el 354 (360)
.|..|...+
T Consensus 332 ~l~~~~~~~ 340 (365)
T 4eqf_A 332 ALRIALSLM 340 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666665443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=9.3e-09 Score=92.97 Aligned_cols=131 Identities=17% Similarity=0.202 Sum_probs=102.9
Q ss_pred HHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhh
Q 036322 149 SARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDAC 228 (360)
Q Consensus 149 Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~ 228 (360)
|...|.++++.+|....++.++|++|...|..
T Consensus 132 A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~------------------------------------------------ 163 (336)
T 1p5q_A 132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKY------------------------------------------------ 163 (336)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCH------------------------------------------------
T ss_pred ccchhcCCHHHHHHHHHHHHHHHHHHHHCCCH------------------------------------------------
Confidence 45566777888999999999999988864332
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCc---------------hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCC
Q 036322 229 EECEELLVKAGRKYRLALSIDGND---------------VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIY 293 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~dp~d---------------~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ 293 (360)
.+|...|..|++++|++ ..+++|.|.++...+. |.+|++-|+.++.+.+ .
T Consensus 164 -------~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-------~~~A~~~~~~al~~~p-~ 228 (336)
T 1p5q_A 164 -------KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA-------FSAAIESCNKALELDS-N 228 (336)
T ss_dssp -------HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-T
T ss_pred -------HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCC-C
Confidence 34455777777777777 6999999999988776 4566666777777644 4
Q ss_pred hhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 294 APDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 294 ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
.+.+|++.|.++..+-. +.+|+..|++||.++|+++.+...|..|...+
T Consensus 229 ~~~a~~~lg~~~~~~g~------------~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVND------------FELARADFQKVLQLYPNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp CHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 68999999999877643 67899999999999999999999988886554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.1e-08 Score=92.29 Aligned_cols=165 Identities=13% Similarity=-0.052 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|.++|.+|++++|.+..++.++|.+|...|+...-+. .++.++.-. |.... +. ..++.++.
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~-p~~~~----~~----------~~lg~~~~ 68 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEM-AVQRGLALH-PGHPE----AV----------ARLGRVRW 68 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHTTS-TTCHH----HH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-CCCHH----HH----------HHHHHHHH
Confidence 3568889999999999999999999999999887764332 344444432 32211 11 11222222
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
.. .-+.+|.+.|..|++++|++..+++|-|.++...+... +|++-|++++.+.+ ..+.++++.|.++
T Consensus 69 ~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-------~A~~~~~~al~~~p-~~~~~~~~l~~~~ 135 (568)
T 2vsy_A 69 TQ-----QRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAE-------AAAAAYTRAHQLLP-EEPYITAQLLNWR 135 (568)
T ss_dssp HT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HC-----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 21 22577888999999999999999999999998877754 45555555555533 4589999999998
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 306 QQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
..+.... -..+|...|++++.++|++......|.
T Consensus 136 ~~~~~~g---------~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 136 RRLCDWR---------ALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHTTCCT---------THHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHhhccc---------cHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 7652111 257899999999999999988766554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=4.8e-07 Score=72.63 Aligned_cols=166 Identities=19% Similarity=0.235 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|.+.|.+++.+.|.+..++.++|.+|...|....-+. -+..++... |.... +.. .++..+.
T Consensus 73 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~~-~~~~~----~~~----------~~a~~~~ 136 (243)
T 2q7f_A 73 LERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKD-MFEKALRAG-MENGD----LFY----------MLGTVLV 136 (243)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHT-CCSHH----HHH----------HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHH-HHHHHHHhC-CCCHH----HHH----------HHHHHHH
Confidence 3567788888888899999999999999888877654322 223333222 21110 100 1111111
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
.. .-+.+|...|..+++++|++..++++.|.++...+.-.+|...|..+++ ..+ ..+.++++.|.++
T Consensus 137 ~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~-~~~~~~~~la~~~ 203 (243)
T 2q7f_A 137 KL-----EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTE-------QDP-GHADAFYNAGVTY 203 (243)
T ss_dssp HT-----SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-------HCT-TCHHHHHHHHHHH
T ss_pred Hh-----ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCc-ccHHHHHHHHHHH
Confidence 11 2246677788889999999999999999998887776666666555544 323 4588999999887
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 306 QQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
...-. +.+|...|+.++.++|+++.+..++.....
T Consensus 204 ~~~~~------------~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 204 AYKEN------------REKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHTTC------------TTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHccC------------HHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 65432 456788999999999999999988765543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.9e-07 Score=75.36 Aligned_cols=80 Identities=14% Similarity=-0.044 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhhC---------CCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 235 LVKAGRKYRLALSID---------GNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 235 L~eAgrKY~~Al~~d---------p~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
+.+|...|..++++. |....++++-|.++...+.-.+|...|..++ .+.+ ..+.++++.|..+
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-------~~~~-~~~~~~~~la~~~ 280 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL-------VLIP-QNASTYSAIGYIH 280 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHST-TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-------hhCc-cchHHHHHHHHHH
Confidence 455666777777765 6777889988888877777555555554444 4323 3578888888888
Q ss_pred HHhhhcCCCChHHHHHHHHHHH
Q 036322 306 QQRSRLRPRNSKEKVKLLQQAR 327 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~ 327 (360)
..+.. ..++.+.+++|.
T Consensus 281 ~~~g~-----~~~A~~~~~~al 297 (330)
T 3hym_B 281 SLMGN-----FENAVDYFHTAL 297 (330)
T ss_dssp HHHTC-----HHHHHHHHHTTT
T ss_pred HHhcc-----HHHHHHHHHHHH
Confidence 76653 345666666554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.79 E-value=7.8e-07 Score=72.56 Aligned_cols=35 Identities=23% Similarity=0.182 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKL 182 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl 182 (360)
+|.++|.++++++|.+..++.++|.+|...|....
T Consensus 55 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 89 (252)
T 2ho1_A 55 QAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKL 89 (252)
T ss_dssp GGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH
Confidence 45566666777777777777777777777665543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-07 Score=94.60 Aligned_cols=163 Identities=12% Similarity=-0.080 Sum_probs=117.0
Q ss_pred HHHHHHHHHHH--------HcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchh
Q 036322 147 HKSARLLSQAI--------AMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKD 218 (360)
Q Consensus 147 ~~Aa~~~s~Al--------~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~ 218 (360)
.+|.+.|.+|+ +.+|.+..++.++|.+|+..|+...-+. .++.++... |.... ...
T Consensus 408 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~-~~~~al~~~-p~~~~--a~~------------ 471 (681)
T 2pzi_A 408 VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATR-KLDDLAERV-GWRWR--LVW------------ 471 (681)
T ss_dssp HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHH-CCCHH--HHH------------
T ss_pred HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHH-HHHHHhccC-cchHH--HHH------------
Confidence 57888899999 9999999999999999999988765433 234444322 22110 000
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHH
Q 036322 219 KIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL 298 (360)
Q Consensus 219 ~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL 298 (360)
.++.++.. ..-+.+|.+.|+.|++++|++..+++|-|.++...|.-.+ ++-|++++.+ +...+.++
T Consensus 472 ~lg~~~~~-----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~--------~~~~~~al~~-~P~~~~a~ 537 (681)
T 2pzi_A 472 YRAVAELL-----TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE--------HKFYQTVWST-NDGVISAA 537 (681)
T ss_dssp HHHHHHHH-----HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT--------TCHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHH-----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH--------HHHHHHHHHh-CCchHHHH
Confidence 11111111 1235678889999999999999999999999988666443 4445555665 33458999
Q ss_pred hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 299 FGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 299 ~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
+|-|.++..+-+ +++|+..|++|+.++|+++.+...+..|.
T Consensus 538 ~~lg~~~~~~g~------------~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 538 FGLARARSAEGD------------RVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHHHHHHHHTTC------------HHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC------------HHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 999999876543 56899999999999999999998877764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.3e-07 Score=81.03 Aligned_cols=168 Identities=10% Similarity=-0.071 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHH-------HHHH------HHHHHHHHHHhccCCCcchHHHHHHhhhh
Q 036322 144 MILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVR-------EELK------LHFSCKLRRLLLEGDVISVEEQKRILKGL 210 (360)
Q Consensus 144 ~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~-------GeLK------l~~s~~Lr~lla~~~p~s~~~~~r~~~~l 210 (360)
.+..+|...|.+|+..+|.++.+..++|..+... |... .+....++.++..-.|.+..-|-.
T Consensus 30 ~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~----- 104 (308)
T 2ond_A 30 LITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA----- 104 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHH-----
Confidence 3447889999999999999999999999998754 3321 111122333333212322211111
Q ss_pred hhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchh-hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhc
Q 036322 211 DYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVR-ALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLK 289 (360)
Q Consensus 211 d~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~-ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~ 289 (360)
++..+.. ..-+.+|.+-|.+|++++|++.. +++++|..+...+...+|.++| +.++..
T Consensus 105 ---------~~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~-------~~a~~~ 163 (308)
T 2ond_A 105 ---------YADYEES-----RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF-------KKARED 163 (308)
T ss_dssp ---------HHHHHHH-----TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH-------HHHHTS
T ss_pred ---------HHHHHHh-----cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHH-------HHHHhc
Confidence 1111111 11245677788888888998887 8888988877655544444444 444443
Q ss_pred cCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 290 GNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 290 ~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
.+ ..++++..+|.. +... .+ -..+|+..|+.||.++|+++.+...+..
T Consensus 164 ~p-~~~~~~~~~a~~--~~~~--~~-------~~~~A~~~~~~al~~~p~~~~~~~~~~~ 211 (308)
T 2ond_A 164 AR-TRHHVYVTAALM--EYYC--SK-------DKSVAFKIFELGLKKYGDIPEYVLAYID 211 (308)
T ss_dssp TT-CCTHHHHHHHHH--HHHT--SC-------CHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHH--HHHH--cC-------CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 33 234555533332 1110 01 1334556666666666666665555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.6e-08 Score=72.06 Aligned_cols=100 Identities=18% Similarity=0.105 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|...|..|++++|++..+++|-|.++...+. |.+|++-|+.++.+.+ ..+.++++.|.++..+-.
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~---- 87 (126)
T 3upv_A 20 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-------FPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKE---- 87 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhC----
Confidence 4677789999999999999999999999988666 5666777777777644 458999999999877643
Q ss_pred ChHHHHHHHHHHHHHHHHhhccC------CCchHHHHHHHhhhhhc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMN------SDNLQVREALSSCMSEL 354 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLd------pd~~qa~~Al~~c~~el 354 (360)
+.+|+..|++|+.++ |+++.+...|..|...+
T Consensus 88 --------~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 88 --------YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 578999999999999 99999999999998765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-06 Score=72.46 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
-+.+|.+.|..+++.+|++..++++-|.++...+...+|..+|..++ ...+ ..+.++++.|..+...-
T Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-------~~~~-~~~~~~~~l~~~~~~~~---- 220 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAV-------ELRP-DDAQLWNKLGATLANGN---- 220 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCT-TCHHHHHHHHHHHHHTT----
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH-------HhCC-CcHHHHHHHHHHHHHcC----
Confidence 35677788899999999999999999999888777555555555544 4333 45889999998876543
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
-+.+|+..|++++.++|+++.+...+..|-..+
T Consensus 221 --------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 221 --------RPQEALDAYNRALDINPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp --------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred --------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 256788899999999999999888887776544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.8e-07 Score=73.97 Aligned_cols=169 Identities=15% Similarity=0.128 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|...|.+++...|.+..++.++|.+|...|....-+. .++.++... |... .+.. .++..+.
T Consensus 39 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~~-~~~~----~~~~----------~la~~~~ 102 (243)
T 2q7f_A 39 YEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALA-FYDKALELD-SSAA----TAYY----------GAGNVYV 102 (243)
T ss_dssp ---CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCH----HHHH----------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHcC-Ccch----HHHH----------HHHHHHH
Confidence 4567788999999999999999999999999887764432 233333322 2211 1110 1111111
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
. ..-+.+|.+.|..+++++|++..++++.|.++...+...+|..+|..+++ +.+ ..+.++++.|..+
T Consensus 103 ~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------~~~-~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 103 V-----KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE-------LNE-NDTEARFQFGMCL 169 (243)
T ss_dssp H-----TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH-------HCT-TCHHHHHHHHHHH
T ss_pred H-----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------hCC-ccHHHHHHHHHHH
Confidence 1 12356777788999999999999999999998888876666666555554 323 3588999999987
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 306 QQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
..... ++.|+..|+.++.++|+++.+...+..|-..++
T Consensus 170 ~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 207 (243)
T 2q7f_A 170 ANEGM------------LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE 207 (243)
T ss_dssp HHHTC------------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHcCC------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcc
Confidence 65542 456788889999999999999888887765543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.9e-06 Score=76.00 Aligned_cols=94 Identities=12% Similarity=-0.075 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
-+.+|.+-|..+++++|++..++++-|.++...|...+|..+|..+++.. + ..+.++++.|..+...-
T Consensus 158 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~-~~~~~~~~l~~~~~~~g---- 225 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-------N-DNTEAFYKISTLYYQLG---- 225 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-------C-SCHHHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------C-CCHHHHHHHHHHHHHcC----
Confidence 35678888999999999999999999999998888877877777776653 2 34899999999887653
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSDNLQVREAL 347 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al 347 (360)
-+.+|+..|+.++.++|+++.+...+
T Consensus 226 --------~~~~A~~~~~~~~~~~p~~~~~~~~~ 251 (450)
T 2y4t_A 226 --------DHELSLSEVRECLKLDQDHKRCFAHY 251 (450)
T ss_dssp --------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 25778899999999999999987665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.8e-07 Score=77.04 Aligned_cols=159 Identities=13% Similarity=0.054 Sum_probs=110.0
Q ss_pred cCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHH
Q 036322 161 HMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGR 240 (360)
Q Consensus 161 P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgr 240 (360)
|.++.++.++|++|+..|+...-+. .++.++... |..... .. .++.++...+ -+.+|..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~-p~~~~a----~~----------~lg~~~~~~g-----~~~~A~~ 60 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALT-LFERALKEN-PQDPEA----LY----------WLARTQLKLG-----LVNPALE 60 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTS-SSCHHH----HH----------HHHHHHHHTT-----CHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-CCCHHH----HH----------HHHHHHHHcC-----CHHHHHH
Confidence 8899999999999999988765433 345555443 332211 11 1222222211 2467778
Q ss_pred HHHHHhhhCCCchhhHHhHHHhhhcc----cchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCCh
Q 036322 241 KYRLALSIDGNDVRALYNWGLALFFL----ETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNS 316 (360)
Q Consensus 241 KY~~Al~~dp~d~~ALYNWGlAL~~~----~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ss 316 (360)
.|..|++++|++..+++|-|.++... +....+..-+.+|+.-|++++.+.| ..+.++++.|.++...-+
T Consensus 61 ~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~------ 133 (217)
T 2pl2_A 61 NGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGE------ 133 (217)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999998773 0111111457788888888888644 568999999999876543
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 317 KEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 317 kEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
+.+|+..|++||.++ +++.+...|..|-..+
T Consensus 134 ------~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~ 164 (217)
T 2pl2_A 134 ------RDKAEASLKQALALE-DTPEIRSALAELYLSM 164 (217)
T ss_dssp ------HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHhcc-cchHHHHHHHHHHHHc
Confidence 567899999999999 9999988877775443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-06 Score=68.60 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELK 181 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLK 181 (360)
.+|.+.|.+++++.|.+..++.++|.+|...|...
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 59 (225)
T 2vq2_A 25 RQATASIEDALKSDPKNELAWLVRAEIYQYLKVND 59 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChH
Confidence 34555556666666666666666666666555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.1e-07 Score=74.71 Aligned_cols=151 Identities=9% Similarity=0.024 Sum_probs=97.5
Q ss_pred hhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHH
Q 036322 124 DLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQ 203 (360)
Q Consensus 124 ~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~ 203 (360)
.++.+|...+..|+ +.+|...|.+|++++|.++.++.++|.+|+..|+...-+. .++.++... | .. ..
T Consensus 8 ~~~~~a~~~~~~g~--------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~-~~~~a~~~~-p-~~-~~ 75 (176)
T 2r5s_A 8 QLLKQVSELLQQGE--------HAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE-LLATIPLEY-Q-DN-SY 75 (176)
T ss_dssp THHHHHHHHHHTTC--------HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHH-HHTTCCGGG-C-CH-HH
T ss_pred HHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHH-HHHHhhhcc-C-Ch-HH
Confidence 34455555544443 4568889999999999999999999999999888764332 234433332 2 11 11
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 204 KRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 204 ~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
......+ ......+ ...|...|+.|++++|++..++++.|.++...|... +|++-|
T Consensus 76 ~~~~~~~---------------~~~~~~~--~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~-------~A~~~~ 131 (176)
T 2r5s_A 76 KSLIAKL---------------ELHQQAA--ESPELKRLEQELAANPDNFELACELAVQYNQVGRDE-------EALELL 131 (176)
T ss_dssp HHHHHHH---------------HHHHHHT--SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH-------HHHHHH
T ss_pred HHHHHHH---------------HHHhhcc--cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH-------HHHHHH
Confidence 1100000 0000000 012567899999999999999999999999877754 455555
Q ss_pred HHHHhccCC-ChhHHHhhHHHHHHHhhh
Q 036322 284 DAMMLKGNI-YAPDALFGWAVALQQRSR 310 (360)
Q Consensus 284 ~AAl~~~n~-~ap~AL~NWGlALqerA~ 310 (360)
+.++.+.+. ..+.++++.|..+..+..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 556665332 236799999999887754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.73 E-value=5e-07 Score=81.39 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc-------ccchhcHHHHHHHH----------------------
Q 036322 229 EECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF-------LETAFDADKIFSAA---------------------- 279 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~-------~~~a~eAe~L~~aA---------------------- 279 (360)
.++..-+.+|...|..+++.+|++..+.++-+.++.. .+...+|...|..+
T Consensus 212 ~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Confidence 4455678899999999999999998765555544433 44444444443333
Q ss_pred ----HHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 280 ----IDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 280 ----~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
++-|+.++...+ ..|.++++.|..+...- -+.+|+..|++++.++|+++.+...+..|-..+
T Consensus 292 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~------------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 357 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQ------------DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ 357 (537)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 333333333322 23455555555543322 245667777777777777777766666655443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.2e-07 Score=80.69 Aligned_cols=115 Identities=15% Similarity=0.072 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCC--ChhHHHhhHHHHHH
Q 036322 229 EECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNI--YAPDALFGWAVALQ 306 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~--~ap~AL~NWGlALq 306 (360)
......+..|...|..|++++|+...++++-|.+....+.-.+|...|..| +.+.+. ....++++.|..+.
T Consensus 310 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka-------L~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE-------FSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH-------HHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHH-------HhcCCCChHHHHHHHHHHHHHH
Confidence 445567888999999999999999999999999988877755555555544 443221 11234555554321
Q ss_pred -H-------------hhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 307 -Q-------------RSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 307 -e-------------rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
+ --++.|. ..++...+..+...++.+|.++|+++.+..-|-.|-
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~-~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~ 440 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQK-SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQ 440 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCC-CHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 1123443 345555666666666777777777777766665543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.7e-07 Score=74.02 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|...|.++++.+|.++.++.++|.+|...|.
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~---------------------------------------------- 59 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQND---------------------------------------------- 59 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC----------------------------------------------
Confidence 3457788999999999999999999988875322
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhh-cccch--hcHHHHHHHHHHHHHHHHhccCCChhHHHhhHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALF-FLETA--FDADKIFSAAIDNFDAMMLKGNIYAPDALFGWA 302 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~-~~~~a--~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWG 302 (360)
+.+|...|..+++++|++..++++.|.+|. ..+.. .+|...| +.++.+.+ ..+.++++.|
T Consensus 60 ---------~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~-------~~al~~~p-~~~~~~~~la 122 (177)
T 2e2e_A 60 ---------YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMI-------DKALALDS-NEITALMLLA 122 (177)
T ss_dssp ---------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHH-------HHHHHHCT-TCHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHH-------HHHHHhCC-CcHHHHHHHH
Confidence 134556788899999999999999999954 34543 4455544 44445433 4589999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 303 VALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 303 lALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
..+...- -+.+|+..|+.++.++|+++....
T Consensus 123 ~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 123 SDAFMQA------------NYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHTT------------CHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHcc------------cHHHHHHHHHHHHhhCCCCccHHH
Confidence 9877653 356799999999999999876543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-06 Score=77.35 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
-+.+|..-|..+++.+|++..+++|=|.++...|.-.+|...|.+|++ + ++..|++++|.|..+..+-+
T Consensus 181 ~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~-------~-~p~~~~~l~~l~~~~~~~g~--- 249 (291)
T 3mkr_A 181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD-------K-DSGHPETLINLVVLSQHLGK--- 249 (291)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------H-CTTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------h-CCCCHHHHHHHHHHHHHcCC---
Confidence 357788899999999999999999999999988886666666665554 3 23469999999999877442
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
. -+.+..+|++++.++|++|.+++-
T Consensus 250 --~------~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 250 --P------PEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp --C------HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --C------HHHHHHHHHHHHHhCCCChHHHHH
Confidence 1 123567889999999999998864
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.6e-07 Score=80.18 Aligned_cols=151 Identities=10% Similarity=0.007 Sum_probs=99.2
Q ss_pred hhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHH
Q 036322 124 DLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQ 203 (360)
Q Consensus 124 ~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~ 203 (360)
.++.+|...+..|+ +..|...|.+|++++|.++.|++++|.+|+..|+...-+. .|+.++... |.. ..
T Consensus 119 ~~~~~a~~~~~~g~--------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~-~l~~~~~~~-p~~--~~ 186 (287)
T 3qou_A 119 LXAQQAMQLMQESN--------YTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEA-VLXTIPLQD-QDT--RY 186 (287)
T ss_dssp HHHHHHHHHHHTTC--------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHH-HHTTSCGGG-CSH--HH
T ss_pred hHHHHHHHHHhCCC--------HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHH-HHHhCchhh-cch--HH
Confidence 45555555554443 3457789999999999999999999999999988774332 344443332 311 11
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 204 KRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 204 ~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
.....++ .+.... -..+|.+.|+.++..+|++++++||-|.++...|...+|.. -|
T Consensus 187 ~~~~~~~------------~l~~~~-----~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~-------~l 242 (287)
T 3qou_A 187 QGLVAQI------------ELLXQA-----ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALE-------LL 242 (287)
T ss_dssp HHHHHHH------------HHHHHH-----TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-------HH
T ss_pred HHHHHHH------------HHHhhc-----ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH-------HH
Confidence 1111111 111111 12346678999999999999999999999998887555554 45
Q ss_pred HHHHhcc-CCChhHHHhhHHHHHHHhhh
Q 036322 284 DAMMLKG-NIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 284 ~AAl~~~-n~~ap~AL~NWGlALqerA~ 310 (360)
..++.+. +...++|+.+.|..+..+-+
T Consensus 243 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 243 FGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhcccccccchHHHHHHHHHHHcCC
Confidence 5555542 22337899999999887654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-07 Score=74.46 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|...|..|++++|++..+++|.|.++...+. |.+|++-|+.++.+.+ ..+.++++.|.++..+-.
T Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~---- 94 (164)
T 3sz7_A 27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ-------HEKAAEDAELATVVDP-KYSKAWSRLGLARFDMAD---- 94 (164)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccC----
Confidence 4678889999999999999999999999988776 4566666666666544 458999999999877642
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchH--HHHHHHhhhhhc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQ--VREALSSCMSEL 354 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~q--a~~Al~~c~~el 354 (360)
+.+|+..|++||.++|+++. ...+|..|...+
T Consensus 95 --------~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 128 (164)
T 3sz7_A 95 --------YKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI 128 (164)
T ss_dssp --------HHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 67899999999999999998 677777776544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.7e-06 Score=71.24 Aligned_cols=181 Identities=14% Similarity=0.078 Sum_probs=112.1
Q ss_pred hhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHH
Q 036322 124 DLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQ 203 (360)
Q Consensus 124 ~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~ 203 (360)
.++..|...+..|+ +.+|..+|.+++..+|.++.++.++|.+|...|....-+. .++.++.-. |...
T Consensus 5 ~~~~~~~~~~~~g~--------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~-~~~~--- 71 (359)
T 3ieg_A 5 KHLELGKKLLAAGQ--------LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALP-DLTKVIALK-MDFT--- 71 (359)
T ss_dssp HHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHC-TTCH---
T ss_pred HHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhC-CCcc---
Confidence 34455555544433 4578888999999999999999999999999988764332 233333322 2211
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCC---CchhhHHhHH------------Hhhhcccc
Q 036322 204 KRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDG---NDVRALYNWG------------LALFFLET 268 (360)
Q Consensus 204 ~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp---~d~~ALYNWG------------lAL~~~~~ 268 (360)
.+. ..++..+... .-+.+|.+.|..+++++| ++..++++.| ..+...+.
T Consensus 72 -~~~----------~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 72 -AAR----------LQRGHLLLKQ-----GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135 (359)
T ss_dssp -HHH----------HHHHHHHHHH-----TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -hHH----------HHHHHHHHHc-----CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 111 0112222211 225678889999999999 9999998885 33333555
Q ss_pred hhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 269 AFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 269 a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
..+ |++-|+.++...+ ..+.++++.|..+..... +.+|+..|++++.++|+++.+...+.
T Consensus 136 ~~~-------A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~la 195 (359)
T 3ieg_A 136 YTA-------AITFLDKILEVCV-WDAELRELRAECFIKEGE------------PRKAISDLKAASKLKSDNTEAFYKIS 195 (359)
T ss_dssp HHH-------HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHTTCSCCHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHhCC-CchHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 444 4444444444433 347788887777655432 44566677777777777777666665
Q ss_pred hhhhh
Q 036322 349 SCMSE 353 (360)
Q Consensus 349 ~c~~e 353 (360)
.|-..
T Consensus 196 ~~~~~ 200 (359)
T 3ieg_A 196 TLYYQ 200 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-08 Score=93.62 Aligned_cols=132 Identities=16% Similarity=0.200 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
+|...|..+++.+|....++.++||+|...|..
T Consensus 252 ~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~----------------------------------------------- 284 (457)
T 1kt0_A 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKY----------------------------------------------- 284 (457)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCH-----------------------------------------------
T ss_pred cCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCH-----------------------------------------------
Confidence 455566777788888888888888888764332
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCc---------------hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCC
Q 036322 228 CEECEELLVKAGRKYRLALSIDGND---------------VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNI 292 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d---------------~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~ 292 (360)
.+|.+.|..|++++|++ ..+++|.|.++...+. |.+|++-|+.++.+.+
T Consensus 285 --------~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-------~~~A~~~~~~al~~~p- 348 (457)
T 1kt0_A 285 --------MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE-------YTKAVECCDKALGLDS- 348 (457)
T ss_dssp --------HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHST-
T ss_pred --------HHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHhcCC-
Confidence 34555677777777776 6899999999888666 5667777777777644
Q ss_pred ChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 293 YAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 293 ~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
..+.|||+.|.++..+- -+.+|+..|++||.++|+++.+...|..|...+
T Consensus 349 ~~~~a~~~~g~a~~~~g------------~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMN------------EFESAKGDFEKVLEVNPQNKAARLQISMCQKKA 398 (457)
T ss_dssp TCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 45899999999987764 366799999999999999999999988887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.65 E-value=4e-06 Score=69.75 Aligned_cols=187 Identities=13% Similarity=0.054 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHH-----------------------
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQ----------------------- 203 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~----------------------- 203 (360)
.+|.+.|.+++++.|.+..++.++|.+|...|....-+. .++.++... |......
T Consensus 72 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 72 GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALA-SLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFA 149 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTS-TTTTTC--------------------CCTT
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHH
Confidence 568889999999999999999999999998887764332 233333221 1111000
Q ss_pred -----HHHhhhhhhhhcchhHHHHHHHHhhHHH--HHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHH
Q 036322 204 -----KRILKGLDYQFMNKDKIASLLVDACEEC--EELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIF 276 (360)
Q Consensus 204 -----~r~~~~ld~~~~~k~~~~~aL~~~~eEa--EeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~ 276 (360)
..+..-++.-+........++...+.-. ..-+.+|.+.|..+++.+|++..++++-|.++...+...+|...|
T Consensus 150 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1111101000000000001111111111 122577888999999999999999999999998877755555555
Q ss_pred HHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCC------------chHHH
Q 036322 277 SAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSD------------NLQVR 344 (360)
Q Consensus 277 ~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd------------~~qa~ 344 (360)
..+ +...+ ..+.++++.|..+...- -++.|+..|++++.++|+ ++.+.
T Consensus 230 ~~a-------~~~~~-~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 289 (327)
T 3cv0_A 230 NRA-------LDINP-GYVRVMYNMAVSYSNMS------------QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW 289 (327)
T ss_dssp HHH-------HHHCT-TCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHH
T ss_pred HHH-------HHcCC-CCHHHHHHHHHHHHHhc------------cHHHHHHHHHHHHHhCCccccccccchhhcCHHHH
Confidence 544 44433 35889999998876543 367788999999999999 78888
Q ss_pred HHHHhhhhhcc
Q 036322 345 EALSSCMSELN 355 (360)
Q Consensus 345 ~Al~~c~~el~ 355 (360)
..+..|-..+.
T Consensus 290 ~~l~~~~~~~g 300 (327)
T 3cv0_A 290 DFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 88887766554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.9e-08 Score=82.01 Aligned_cols=99 Identities=18% Similarity=0.298 Sum_probs=83.0
Q ss_pred HHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCCh
Q 036322 237 KAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNS 316 (360)
Q Consensus 237 eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ss 316 (360)
.+|..|+.+++++|++..++|+-|.++...|. |.+|++-|+.++.+ ++..|.++++.|.++..+-+
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~-------~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~------ 85 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGR-------IEEAEVFFRFLCIY-DFYNVDYIMGLAAIYQIKEQ------ 85 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC------
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcc------
Confidence 36778999999999999999999999988777 45566666666665 34569999999999877653
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 317 KEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 317 kEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
+.+|+..|++|+.++|+++.+.--+..|-..+.
T Consensus 86 ------~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg 118 (151)
T 3gyz_A 86 ------FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLK 118 (151)
T ss_dssp ------HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 778999999999999999999999888876654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.63 E-value=7.5e-07 Score=67.56 Aligned_cols=158 Identities=15% Similarity=0.056 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|.+.|.+++...|.+..++.++|.+|...|....-+. -+..++... |.... +. ..++..+.
T Consensus 24 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~-~~~~~----~~----------~~~a~~~~ 87 (186)
T 3as5_A 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE-LLERSLADA-PDNVK----VA----------TVLGLTYV 87 (186)
T ss_dssp HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCHH----HH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcC-CCCHH----HH----------HHHHHHHH
Confidence 3567888999999999999999999999999887764322 233333322 22111 10 01111111
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
. ..-+.+|.+.|..+++.+|++..++++.|.++...+...+|...|..++ ...+ ..+.++++.|..+
T Consensus 88 ~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-------~~~~-~~~~~~~~la~~~ 154 (186)
T 3as5_A 88 Q-----VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL-------GLRP-NEGKVHRAIAFSY 154 (186)
T ss_dssp H-----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCT-TCHHHHHHHHHHH
T ss_pred H-----hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH-------hcCc-cchHHHHHHHHHH
Confidence 1 1235677889999999999999999999999988777655555555554 4333 3589999999987
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 306 QQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
...- -+.+|...|+.++.++|+++...
T Consensus 155 ~~~~------------~~~~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 155 EQMG------------RHEEALPHFKKANELDEGASVEL 181 (186)
T ss_dssp HHTT------------CHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHcC------------CHHHHHHHHHHHHHcCCCchhhH
Confidence 6543 36789999999999999987543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-06 Score=69.74 Aligned_cols=178 Identities=13% Similarity=0.051 Sum_probs=118.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHcC-cCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc------CCCcchHHHHHHhh
Q 036322 136 GWDEERAEMILHKSARLLSQAIAMQ-HMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLE------GDVISVEEQKRILK 208 (360)
Q Consensus 136 ~~De~~Ad~lL~~Aa~~~s~Al~~~-P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~------~~p~s~~~~~r~~~ 208 (360)
..+...|..++.+|.+++.+.+..+ |....++.++|++|...|....-+.- ++.++.- .++ +....+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~---~~~~~~~~ 89 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL-LNDALAIREKTLGKDH---PAVAATLN 89 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHTCTTC---HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHHHcCCcc---hHHHHHHH
Confidence 3456677888889999998888765 88999999999999999887654322 2222211 111 11111211
Q ss_pred hhhhhhcchhHHHHHHHHh--hHHHHHHHHHHHHHHHHHhhh-CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHH
Q 036322 209 GLDYQFMNKDKIASLLVDA--CEECEELLVKAGRKYRLALSI-DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDA 285 (360)
Q Consensus 209 ~ld~~~~~k~~~~~aL~~~--~eEaEeLL~eAgrKY~~Al~~-dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~A 285 (360)
.++..+... -++|.+++..|.+.+...... +|....+++|.|.++...+.-.+|..+|.+|++.++.
T Consensus 90 ----------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 90 ----------NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp ----------HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 223333322 356666666666655555444 4888999999999999999999999999999998876
Q ss_pred HHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHH
Q 036322 286 MMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQD 332 (360)
Q Consensus 286 Al~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ 332 (360)
.....++..+.++++.|..+...-. ..++.++++++...+..
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGK-----YQDAETLYKEILTRAHE 201 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHH
Confidence 5442233446889999988876643 45666666666665433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.58 E-value=5e-06 Score=65.56 Aligned_cols=154 Identities=14% Similarity=0.197 Sum_probs=105.5
Q ss_pred cCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHH
Q 036322 161 HMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGR 240 (360)
Q Consensus 161 P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgr 240 (360)
.++..++.++|++|...|....-+.. ++.++.-. |.... +.. .++.++... .-+..|..
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~-~~~al~~~-p~~~~----~~~----------~la~~~~~~-----~~~~~a~~ 60 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRA-YKKVLKAD-PNNVE----TLL----------KLGKTYMDI-----GLPNDAIE 60 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHH-HHHHHHHC-TTCHH----HHH----------HHHHHHHHT-----TCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhC-CCCHH----HHH----------HHHHHHHHC-----CCHHHHHH
Confidence 35778999999999999988765432 33334332 32211 111 112222211 12456777
Q ss_pred HHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHH
Q 036322 241 KYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKV 320 (360)
Q Consensus 241 KY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~ 320 (360)
.|..++..+|+...++++.|......+.... |.+-|..++.+.+ ..++++++.|.++...-
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g----------- 121 (184)
T 3vtx_A 61 SLKKFVVLDTTSAEAYYILGSANFMIDEKQA-------AIDALQRAIALNT-VYADAYYKLGLVYDSMG----------- 121 (184)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH-------HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHcCCHHH-------HHHHHHHHHHhCc-cchHHHHHHHHHHHHhC-----------
Confidence 8899999999999999999998887666444 4444555555433 45899999999987654
Q ss_pred HHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 321 KLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 321 ~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+.+|+..|++++.++|+++.+...|..|-..++
T Consensus 122 -~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 122 -EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp -CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred -CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 3678999999999999999999988888765543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-07 Score=82.85 Aligned_cols=102 Identities=17% Similarity=0.068 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhhhCCC-------chh-----hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHH----
Q 036322 235 LVKAGRKYRLALSIDGN-------DVR-----ALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL---- 298 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~-------d~~-----ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL---- 298 (360)
+.+|..+|+.||+++|+ ++. +++|=|.+|..-|.-.+|-.-|..|++-|..++.+.+ ..+.||
T Consensus 27 ~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p-d~~~A~~~~~ 105 (159)
T 2hr2_A 27 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ-DEGKLWISAV 105 (159)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS-THHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC-chHHHHHHHH
Confidence 67889999999999999 676 9999999999999988888888888888888888644 568999
Q ss_pred hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 299 FGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 299 ~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
||-|.||..+-+ +..|+..|++||.++|++.-+..-|..
T Consensus 106 ~~rG~aL~~lgr------------~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 106 YSRALALDGLGR------------GAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp HHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred HhHHHHHHHCCC------------HHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999987763 668899999999999999866544443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-06 Score=71.04 Aligned_cols=153 Identities=12% Similarity=0.005 Sum_probs=102.0
Q ss_pred CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHH
Q 036322 160 QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAG 239 (360)
Q Consensus 160 ~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAg 239 (360)
.|.++.++.+.|++|...|....-+. .+..++.-.++..... .- .++.+.. ...-+.+|.
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~----~~----------~~~~~~~-----~~~~~~~A~ 62 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFE-KYSEYLKLTNNQDSVT----AY----------NCGVCAD-----NIKKYKEAA 62 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHTTTCCHHH----HH----------HHHHHHH-----HTTCHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHH-HHHHHHhccCCCCcHH----HH----------HHHHHHH-----HhhcHHHHH
Confidence 36778999999999999888775433 2334443332122110 00 0111111 112356778
Q ss_pred HHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChh-------HHHhhHHHHHHHhhhcC
Q 036322 240 RKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAP-------DALFGWAVALQQRSRLR 312 (360)
Q Consensus 240 rKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap-------~AL~NWGlALqerA~lr 312 (360)
+.|..|++++|++..++++-|.++...+...+|.. -|+.++.+.+ ..| .++++-|..+...
T Consensus 63 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~-------~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~---- 130 (228)
T 4i17_A 63 DYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIA-------TLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQA---- 130 (228)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHH-------HHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHh----
Confidence 88999999999999999999999988777555544 4454455433 346 5577777765432
Q ss_pred CCChHHHHHHHHHHHHHHHHhhccCCC--chHHHHHHHhhhh
Q 036322 313 PRNSKEKVKLLQQARRLYQDALHMNSD--NLQVREALSSCMS 352 (360)
Q Consensus 313 ~~sskEk~~Ll~qA~~kye~ALrLdpd--~~qa~~Al~~c~~ 352 (360)
.-+.+|+..|++||.++|+ ++.+...|..|-.
T Consensus 131 --------~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 131 --------GNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp --------TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred --------ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 3478899999999999999 9999888877753
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-06 Score=71.47 Aligned_cols=163 Identities=13% Similarity=0.014 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHc----CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHH
Q 036322 146 LHKSARLLSQAIAM----QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIA 221 (360)
Q Consensus 146 L~~Aa~~~s~Al~~----~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~ 221 (360)
+.+|.+.|.++++. +|.+..++.++|.+|...|....-+. -++.++.-. |.... +.. .++
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~~-~~~~~----~~~----------~la 84 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARN-DFSQALAIR-PDMPE----VFN----------YLG 84 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-CCCHH----HHH----------HHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHH-HHHHHHHcC-CCcHH----HHH----------HHH
Confidence 56677788888876 46777888888888888777664322 223333222 22111 100 111
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 222 SLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 222 ~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
..+.. ..-+.+|.+-|..|++++|++..++++.|.++...|...+|...| +.++.+.+. .+.++..-
T Consensus 85 ~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------~~a~~~~~~-~~~~~~~~ 151 (275)
T 1xnf_A 85 IYLTQ-----AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL-------LAFYQDDPN-DPFRSLWL 151 (275)
T ss_dssp HHHHH-----TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH-------HHHHHHCTT-CHHHHHHH
T ss_pred HHHHH-----ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHH-------HHHHHhCCC-ChHHHHHH
Confidence 11111 123567788999999999999999999999998877755555444 444444332 34444333
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhh
Q 036322 302 AVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSC 350 (360)
Q Consensus 302 GlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c 350 (360)
++.+ ...-+..|+..|+.++...|+++....-+..+
T Consensus 152 ~~~~-------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 187 (275)
T 1xnf_A 152 YLAE-------------QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 187 (275)
T ss_dssp HHHH-------------HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHH
T ss_pred HHHH-------------HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 3321 12346788899999999999987766544433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.4e-07 Score=72.06 Aligned_cols=100 Identities=17% Similarity=0.112 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhhh------------------CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhH
Q 036322 235 LVKAGRKYRLALSI------------------DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPD 296 (360)
Q Consensus 235 L~eAgrKY~~Al~~------------------dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~ 296 (360)
+.+|.+.|..|+++ +|....+++|-|.++...+. |.+|++-|+.++.+.+ ..+.
T Consensus 27 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~ 98 (162)
T 3rkv_A 27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD-------LHEAEETSSEVLKREE-TNEK 98 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHST-TCHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcCC-cchH
Confidence 56788899999998 88888999999999887665 5677777777777644 4589
Q ss_pred HHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCch-HHHHHHHhhhhhc
Q 036322 297 ALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNL-QVREALSSCMSEL 354 (360)
Q Consensus 297 AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~-qa~~Al~~c~~el 354 (360)
+|++-|.++..+- -+..|+..|+.||.++|+++ .+...|..|...+
T Consensus 99 a~~~~g~~~~~~g------------~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 99 ALFRRAKARIAAW------------KLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh------------cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999987765 36789999999999999999 7788888887654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-06 Score=75.76 Aligned_cols=143 Identities=15% Similarity=0.056 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|+..|.+|++++|.++.+++|+|.+|...|+.
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--------------------------------------------- 54 (281)
T 2c2l_A 20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP--------------------------------------------- 54 (281)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH---------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH---------------------------------------------
Confidence 45688899999999999999999999888754322
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
.+|.+.|..|++++|++..++|+-|.++...|.-.+|.+.|..|++..-. .|.++..+...+
T Consensus 55 ----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--------~~~~~~~~~~~~ 116 (281)
T 2c2l_A 55 ----------EQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE--------QRLNFGDDIPSA 116 (281)
T ss_dssp ----------HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------TTCCCCSHHHHH
T ss_pred ----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--------chhhHHHHHHHH
Confidence 33445788888889999999999998888888777777777666654321 011111111111
Q ss_pred HHhh----------hcCCCChHH-------HHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 306 QQRS----------RLRPRNSKE-------KVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 306 qerA----------~lr~~sskE-------k~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
..++ ...+....- ...-..+|+..|+.|+.++|++...+..|....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 179 (281)
T 2c2l_A 117 LRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179 (281)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhHHHHHH
Confidence 1000 011110100 123457888999999999999988877765443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.56 E-value=4.5e-06 Score=63.35 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=83.5
Q ss_pred HHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCC
Q 036322 118 YLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDV 197 (360)
Q Consensus 118 ~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p 197 (360)
.+..+..+...|...+..++ +..|...|.+++++.|.++.++.++|.+|...|.
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~------------------ 62 (166)
T 1a17_A 9 ALKRAEELKTQANDYFKAKD--------YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC------------------ 62 (166)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC------------------
Confidence 34455566666666655443 5677889999999999999999999977764321
Q ss_pred cchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHH
Q 036322 198 ISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFS 277 (360)
Q Consensus 198 ~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~ 277 (360)
+.+|.+.|..+++++|++..++++.|.++...+...+|...
T Consensus 63 -------------------------------------~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-- 103 (166)
T 1a17_A 63 -------------------------------------YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD-- 103 (166)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH--
T ss_pred -------------------------------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHH--
Confidence 13445578888899999999999999998887775555444
Q ss_pred HHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 278 AAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 278 aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
|+.++.+.+ ..+.++.+++.+..
T Consensus 104 -----~~~a~~~~p-~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 104 -----YETVVKVKP-HDKDAKMKYQECNK 126 (166)
T ss_dssp -----HHHHHHHST-TCHHHHHHHHHHHH
T ss_pred -----HHHHHHhCC-CCHHHHHHHHHHHH
Confidence 444455433 34788877777643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.3e-06 Score=63.35 Aligned_cols=120 Identities=15% Similarity=-0.015 Sum_probs=83.3
Q ss_pred HhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchH
Q 036322 122 ANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVE 201 (360)
Q Consensus 122 a~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~ 201 (360)
+..+...|..++..++ +.+|+..|.+|++++|.++.++.++|.+|...|+.
T Consensus 4 a~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~--------------------- 54 (126)
T 3upv_A 4 AEEARLEGKEYFTKSD--------WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF--------------------- 54 (126)
T ss_dssp HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCH---------------------
Confidence 3344455555544443 45788999999999999999999999888753221
Q ss_pred HHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHH
Q 036322 202 EQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAID 281 (360)
Q Consensus 202 ~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~d 281 (360)
.+|.+-|..|++++|++..++++.|.++...+.-.+|...|..|++
T Consensus 55 ----------------------------------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 55 ----------------------------------PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp ----------------------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3455688899999999999999999999998886666666655555
Q ss_pred HHHHHHhccCCChhHHHhhHHHHHH
Q 036322 282 NFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 282 KY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
..-.-.. .+..++++...+.+.+
T Consensus 101 ~~p~~~~--~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 101 KDAEVNN--GSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHT--TTTHHHHHHHHHHHHH
T ss_pred hCcccCC--chhHHHHHHHHHHHHH
Confidence 4421111 1244666666665544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=8.4e-07 Score=66.31 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRN 315 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~s 315 (360)
.+|...|..+++++|++..+++|-|.++...+.-. .|++-|+.++.+.+ ..+.++++.|.++..+..
T Consensus 26 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~-------~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~----- 92 (137)
T 3q49_B 26 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE-------QALADCRRALELDG-QSVKAHFFLGQCQLEMES----- 92 (137)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHhCc-hhHHHHHHHHHHHHHHhh-----
Confidence 45666899999999999999999999998877644 45555555555433 468999999999877642
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCC-----chHHHHHHHhhhhh
Q 036322 316 SKEKVKLLQQARRLYQDALHMNSD-----NLQVREALSSCMSE 353 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLdpd-----~~qa~~Al~~c~~e 353 (360)
+.+|+..|+.|+.++|+ ++.+...|..|...
T Consensus 93 -------~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 93 -------YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999 88999988888653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.9e-06 Score=68.41 Aligned_cols=163 Identities=9% Similarity=0.054 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc-CCCcchHHHHHHhhhhhhhhcchhHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLE-GDVISVEEQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~-~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
+.+|.+.|.+++++.|.+..++.++|.+|...|....-+. -++.++.. ..|.. ..+.. .++..+
T Consensus 87 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~~~----~~~~~----------~la~~~ 151 (252)
T 2ho1_A 87 PKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQ-RLLEASQDTLYPER----SRVFE----------NLGLVS 151 (252)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHTTCTTCTTH----HHHHH----------HHHHHH
T ss_pred HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhCccCccc----HHHHH----------HHHHHH
Confidence 3578889999999999999999999999999887764322 23444441 11211 11111 112222
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
... .-+.+|.+.|..+++.+|++..++++.|.++...+...+|..+|.. ++...+ ..+.+++..|..
T Consensus 152 ~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-------~~~~~~-~~~~~~~~~~~~ 218 (252)
T 2ho1_A 152 LQM-----KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL-------FAQGGG-QNARSLLLGIRL 218 (252)
T ss_dssp HHT-----TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------HHTTSC-CCHHHHHHHHHH
T ss_pred HHc-----CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-------HHHhCc-CcHHHHHHHHHH
Confidence 211 1245677788889999999999999999998887775555555554 444433 457888877777
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 305 LQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 305 LqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
+.... -.++|...|+.++.++|+++.+...+.
T Consensus 219 ~~~~g------------~~~~A~~~~~~~~~~~p~~~~~~~~l~ 250 (252)
T 2ho1_A 219 AKVFE------------DRDTAASYGLQLKRLYPGSLEYQEFQA 250 (252)
T ss_dssp HHHTT------------CHHHHHHHHHHHHHHCTTSHHHHHHHT
T ss_pred HHHcc------------CHHHHHHHHHHHHHHCCCCHHHHHHHh
Confidence 65432 345788899999999999999887653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.55 E-value=5.8e-06 Score=74.47 Aligned_cols=182 Identities=13% Similarity=0.034 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
.|.+.|.+++.+.|.++.++.++|++|...|....-+. .++.++.-. |..... . -.++..+...
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~-~~~~~~----~----------~~la~~~~~~ 357 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE-DFQKAQSLN-PENVYP----Y----------IQLACLLYKQ 357 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCSHH----H----------HHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHhC-CCCHHH----H----------HHHHHHHHHc
Confidence 45566666666666666666666666666655443221 122222211 111000 0 0111111111
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
.-+.+|...|..+++.+|++..++++.|.++...+.-.+|...|..|++....-.. ....-..+++.|..+..
T Consensus 358 -----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 358 -----GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK--IHVGIGPLIGKATILAR 430 (537)
T ss_dssp -----TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS--CSSTTHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh--hHHHHHHHHHHHHHHHH
Confidence 22456777888888899999999999999998888877788888777776532111 11122335555555544
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 308 RSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 308 rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
.....+. --...-+.+|+..|++++.++|+++.+...|..|-..+
T Consensus 431 ~~~~~~~--~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 475 (537)
T 3fp2_A 431 QSSQDPT--QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM 475 (537)
T ss_dssp HHTC------CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred Hhhccch--hhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 3110000 00013567777778888888888877777776665443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=9.5e-07 Score=83.64 Aligned_cols=128 Identities=13% Similarity=-0.049 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|.+.|.+|++++|.+..++.++|.+|...|+...-+. .++.++.-. |.... +. ..++.++.
T Consensus 39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~-p~~~~----~~----------~~la~~~~ 102 (568)
T 2vsy_A 39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV-LLQQASDAA-PEHPG----IA----------LWLGHALE 102 (568)
T ss_dssp HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCHH----HH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcC-CCCHH----HH----------HHHHHHHH
Confidence 4578899999999999999999999999999888765432 233344332 22211 11 11222222
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcc---cchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFL---ETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWA 302 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~---~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWG 302 (360)
.. .-+.+|.+.|..|++++|++..+++|.|.++... +... +|.+-|++++...+ ...++++..+
T Consensus 103 ~~-----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~-------~A~~~~~~al~~~p-~~~~~~~~l~ 169 (568)
T 2vsy_A 103 DA-----GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALD-------VLSAQVRAAVAQGV-GAVEPFAFLS 169 (568)
T ss_dssp HT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHH-------HHHHHHHHHHHHTC-CCSCHHHHTT
T ss_pred Hc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHH-------HHHHHHHHHHhcCC-cccChHHHhC
Confidence 21 2256778899999999999999999999999886 6644 45555555555433 3355665444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-07 Score=71.65 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|...|..||+++|++..+++|-|.++..-+.-.+|...|..|++-...... .......+|++.|.++..+
T Consensus 24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~------ 96 (127)
T 4gcn_A 24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA-DYKLIAKAMSRAGNAFQKQ------ 96 (127)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHHc------
Confidence 467888999999999999999999999999888755555555554443221000 0001125777777775543
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSC 350 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c 350 (360)
.-+.+|+..|++||.++|| |+.+..|..|
T Consensus 97 ------~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 97 ------NDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp ------TCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 3478899999999999985 7788777765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-06 Score=61.13 Aligned_cols=97 Identities=19% Similarity=0.113 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+.|..++..+|++..++++.|.++...+.- .+|++-|+.++...+ ..+.++++.|.++....
T Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~----- 86 (118)
T 1elw_A 20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY-------QKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLN----- 86 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH-------HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHh-----
Confidence 46677789999999999999999999998876664 445555555555433 45899999999987654
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
-+.+|+..|+.++.++|+++.+...+..|.
T Consensus 87 -------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 87 -------RFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp -------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 267789999999999999999998887764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=4.5e-06 Score=68.22 Aligned_cols=164 Identities=14% Similarity=-0.012 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.+.|.+|+++.|.++.++.++|.+|...|....-+. -++.++.-. |.....+. .++.++..
T Consensus 60 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~al~~~-~~~~~~~~--------------~la~~~~~ 123 (275)
T 1xnf_A 60 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE-AFDSVLELD-PTYNYAHL--------------NRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCTHHHH--------------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH-HHHHHHhcC-ccccHHHH--------------HHHHHHHH
Confidence 467788888888888888888888888888777664332 233333322 21110000 11111111
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHH--------------------------HHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIF--------------------------SAAI 280 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~--------------------------~aA~ 280 (360)
. .-+.+|.+.|..+++++|++..++..-++.+ ..+...+|...| .+|+
T Consensus 124 ~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 124 G-----GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE-QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLM 197 (275)
T ss_dssp T-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHH
T ss_pred h-----ccHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHH
Confidence 1 1133444455555555555553333222221 123333344444 3345
Q ss_pred HHHHHHHhccCC---ChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 281 DNFDAMMLKGNI---YAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 281 dKY~AAl~~~n~---~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
+.|..++...+. ..+.++++.|..+...- -++.|+..|++|+.++|++....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLG------------DLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhCCchhHHHH
Confidence 555555443221 11578888888865543 36678999999999999876543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.52 E-value=4.3e-06 Score=66.94 Aligned_cols=103 Identities=16% Similarity=0.180 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHH-----hc---cCCChhHHHhhHHHHHHH
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMM-----LK---GNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl-----~~---~n~~ap~AL~NWGlALqe 307 (360)
.+|.+.|..|++++|++..+++|-|.++...+.-.+|...|..|++.+..-. .. .....+.++++.|.++..
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 54 TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 4566688899999999999999999999888876555555555554321000 00 011235999999999876
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc--hHHHHHHHhh
Q 036322 308 RSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN--LQVREALSSC 350 (360)
Q Consensus 308 rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~--~qa~~Al~~c 350 (360)
+- -+..|+..|+.|+.++|++ .....|+...
T Consensus 134 ~g------------~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 166 (213)
T 1hh8_A 134 KE------------EWKKAEEQLALATSMKSEPRHSKIDKAMECV 166 (213)
T ss_dssp TT------------CHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred cc------------CHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence 54 3577899999999999966 4455555544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.52 E-value=1e-06 Score=87.59 Aligned_cols=169 Identities=15% Similarity=0.033 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|.+.|.+|++++|.+..+++++|++|+..|+...-+. .++.++.-. |.....+ ..++.++.
T Consensus 449 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~l~-P~~~~~~--------------~~lg~~~~ 512 (681)
T 2pzi_A 449 VAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATK-HFTEVLDTF-PGELAPK--------------LALAATAE 512 (681)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHS-TTCSHHH--------------HHHHHHHH
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-CCChHHH--------------HHHHHHHH
Confidence 3578999999999999999999999999999988775433 234444332 2211110 11122221
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
..+ -+.+ .+.|+.|++++|++..|++|-|.++...|. +.+|++-|++++.+.+ ..++|++|.|.++
T Consensus 513 ~~g-----~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-------~~~A~~~~~~al~l~P-~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 513 LAG-----NTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD-------RVGAVRTLDEVPPTSR-HFTTARLTSAVTL 578 (681)
T ss_dssp HHT-----CCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHTSCTTST-THHHHHHHHHHHT
T ss_pred HcC-----ChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC-------HHHHHHHHHhhcccCc-ccHHHHHHHHHHH
Confidence 111 1223 447999999999999999999999988776 4677777887777644 5689999999997
Q ss_pred HHhhhcCCCChHHH-HHHHHHHHHHHHHhhccCCCchHHHHHHHh
Q 036322 306 QQRSRLRPRNSKEK-VKLLQQARRLYQDALHMNSDNLQVREALSS 349 (360)
Q Consensus 306 qerA~lr~~sskEk-~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~ 349 (360)
.. .+...+. ..-+.+|.+.++.....+|+..+.+..|..
T Consensus 579 ~~-----~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~~ll~ 618 (681)
T 2pzi_A 579 LS-----GRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRALVLG 618 (681)
T ss_dssp C------------CCHHHHHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred Hc-----cCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 32 1211122 457888888888776666666665555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.6e-06 Score=67.11 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|+++|.+|++++|.++.++.++|.+|+..|+.
T Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--------------------------------------------- 61 (164)
T 3sz7_A 27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH--------------------------------------------- 61 (164)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCH---------------------------------------------
Confidence 45788999999999999999999999888753222
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
.+|...|..|++++|++..++++.|.++...+.-. +|++-|+.++.+.+ ..+.++++-|++
T Consensus 62 ----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-------~A~~~~~~al~~~p-~~~~~~~~~~l~ 122 (164)
T 3sz7_A 62 ----------EKAAEDAELATVVDPKYSKAWSRLGLARFDMADYK-------GAKEAYEKGIEAEG-NGGSDAMKRGLE 122 (164)
T ss_dssp ----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCC-CchHHHHHHHHH
Confidence 34555788899999999999999999998877744 44555555555433 346788887776
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.6e-06 Score=74.86 Aligned_cols=181 Identities=10% Similarity=0.051 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch---HHHHHHhhhhhhhhcchhHH----
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV---EEQKRILKGLDYQFMNKDKI---- 220 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~---~~~~r~~~~ld~~~~~k~~~---- 220 (360)
.|.+.|.+++.+.|.+..++.++|.+|...|....-+. .++.++.-. |... ...+.+...... .....++
T Consensus 288 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~ 364 (514)
T 2gw1_A 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK-DFDKAKELD-PENIFPYIQLACLAYRENK-FDDCETLFSEA 364 (514)
T ss_dssp TGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH-HHHHHHHTC-SSCSHHHHHHHHHTTTTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhC-hhhHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 67777777777777777777777777777766543322 222222221 2111 111222111100 0000000
Q ss_pred -------HHHHHHhh--HHHHHHHHHHHHHHHHHhhhCCCchh------hHHhHHHhhhc---ccchhcHHHHHHHHHHH
Q 036322 221 -------ASLLVDAC--EECEELLVKAGRKYRLALSIDGNDVR------ALYNWGLALFF---LETAFDADKIFSAAIDN 282 (360)
Q Consensus 221 -------~~aL~~~~--eEaEeLL~eAgrKY~~Al~~dp~d~~------ALYNWGlAL~~---~~~a~eAe~L~~aA~dK 282 (360)
..++...+ -....-+.+|.+.|..+++++|++.. ++++-|.++.. .|...+| ++-
T Consensus 365 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A-------~~~ 437 (514)
T 2gw1_A 365 KRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA-------TNL 437 (514)
T ss_dssp HHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHH-------HHH
T ss_pred HHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHH-------HHH
Confidence 00010000 00112346677788888888888865 88888888877 6665444 444
Q ss_pred HHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 283 FDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 283 Y~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
|+.++...+ ..+.++++.|..+...- -+..|+..|++|+.++|+++++..++.-+.
T Consensus 438 ~~~a~~~~~-~~~~~~~~la~~~~~~g------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 438 LEKASKLDP-RSEQAKIGLAQMKLQQE------------DIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHhCc-ccHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 555555433 45899999998876543 356789999999999999999999876543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-06 Score=68.10 Aligned_cols=88 Identities=15% Similarity=-0.006 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|...|+.|++++|++..++++-|.++...|. +.+|+.-|+.++.+.+ ..++++++.|.++...-
T Consensus 33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-------~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g----- 99 (121)
T 1hxi_A 33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK-------DGLAIIALNHARMLDP-KDIAVHAALAVSHTNEH----- 99 (121)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC-----
Confidence 4677889999999999999999999999998776 4566666777777644 45899999999976544
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchH
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQ 342 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~q 342 (360)
-+.+|+..|+++|+++|+++.
T Consensus 100 -------~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 100 -------NANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp -------HHHHHHHHHHHHHC-------
T ss_pred -------CHHHHHHHHHHHHHhCcCCCC
Confidence 467899999999999999865
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.47 E-value=8.6e-06 Score=64.07 Aligned_cols=165 Identities=12% Similarity=-0.031 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHH-HHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVR-EELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~-GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
+.+|.+.|.+++.+.|.+..++.++|.+|... |....-+. .+..++.....+. ...+.. .++..+
T Consensus 58 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~-~~~~~~~~~~~~~---~~~~~~----------~l~~~~ 123 (225)
T 2vq2_A 58 NDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMA-YFDKALADPTYPT---PYIANL----------NKGICS 123 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHH-HHHHHHTSTTCSC---HHHHHH----------HHHHHH
T ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHH-HHHHHHcCcCCcc---hHHHHH----------HHHHHH
Confidence 35688899999999999999999999999988 77664322 2344444111111 011111 111122
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
... .-+.+|-+.|..+++.+|++..++++.|.++...+...+|..+|..+++ ..+...+.+++..+..
T Consensus 124 ~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~~~ 191 (225)
T 2vq2_A 124 AKQ-----GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQS-------RVEVLQADDLLLGWKI 191 (225)
T ss_dssp HHT-----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HHCSCCHHHHHHHHHH
T ss_pred HHc-----CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCCHHHHHHHHHH
Confidence 111 2245677788888999999999999999999887776666666665554 3231346776544444
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 305 LQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 305 LqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
+... + -.+.|...++.++.++|+++.+...|.
T Consensus 192 ~~~~-----~-------~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 192 AKAL-----G-------NAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHT-----T-------CHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHhc-----C-------cHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 3222 1 235577788888889999999988764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3e-07 Score=73.65 Aligned_cols=99 Identities=14% Similarity=0.224 Sum_probs=79.7
Q ss_pred HHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCCh
Q 036322 237 KAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNS 316 (360)
Q Consensus 237 eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ss 316 (360)
.+|..|+.+++++|++..++|+-|.++...|. |.+|+.-|+.++.+.+ ..|.++++-|.++...-
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~-------~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g------- 69 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGX-------YEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMG------- 69 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT-------
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHh-------
Confidence 34667999999999999999999999998777 4555666666666544 46999999999987654
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 317 KEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 317 kEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+..|+..|+.||.++|+++.+.--+..|-..+.
T Consensus 70 -----~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 70 -----QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp -----CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred -----hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 3678999999999999999999988888765543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=3.2e-06 Score=60.74 Aligned_cols=101 Identities=18% Similarity=0.096 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+..|...|..++..+|++..++++.|.++...+.-.+|...|.. ++...+ ..+.++++.|..+...-
T Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~----- 94 (131)
T 2vyi_A 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER-------AICIDP-AYSKAYGRMGLALSSLN----- 94 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------HHHHCT-TCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHH-------HHhcCc-cCHHHHHHHHHHHHHhC-----
Confidence 45677788999999999999999999999887775555555444 444433 45899999999877653
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+..|+..|++++.++|+++.+...+..|...+.
T Consensus 95 -------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 95 -------KHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp -------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 3678899999999999999999999888876654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.2e-07 Score=82.42 Aligned_cols=168 Identities=14% Similarity=0.122 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 036322 112 DVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRL 191 (360)
Q Consensus 112 ~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~l 191 (360)
+..++..+..+..+...|..+.+.++ +.+|+.+|.+|+.+.|.+.. ...+ |..+... ..++
T Consensus 169 ~~~~~~~~~~a~~~~~~g~~~~~~g~--------~~~A~~~y~~Al~~~p~~~~-~~~~-------~~~~~~~-~~l~-- 229 (338)
T 2if4_A 169 DMTVEERIGAADRRKMDGNSLFKEEK--------LEEAMQQYEMAIAYMGDDFM-FQLY-------GKYQDMA-LAVK-- 229 (338)
T ss_dssp BCCHHHHHHHHHHHHHHHHHTCSSSC--------CHHHHHHHHHHHHHSCHHHH-HTCC-------HHHHHHH-HHHH--
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHhccchh-hhhc-------ccHHHHH-HHHH--
Confidence 34456677778888888888876665 35678899999999998762 1111 1111110 0000
Q ss_pred hccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhc
Q 036322 192 LLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFD 271 (360)
Q Consensus 192 la~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~e 271 (360)
. + ... +++.++... .-+.+|...|..|++++|++.+||||.|.++...+.
T Consensus 230 -~---~-~~~-----------------nla~~~~~~-----g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~--- 279 (338)
T 2if4_A 230 -N---P-CHL-----------------NIAACLIKL-----KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ--- 279 (338)
T ss_dssp -T---H-HHH-----------------HHHHHHHTT-----TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---
T ss_pred -H---H-HHH-----------------HHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---
Confidence 0 0 000 111111111 113567778999999999999999999999998776
Q ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 272 ADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 272 Ae~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
|.+|++-|++++.+.+ ..+.++++.+..... .....+.+...|+.+|.++|+++..+
T Consensus 280 ----~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~-----------~~~~~~~a~~~~~~~l~~~p~~~~~~ 336 (338)
T 2if4_A 280 ----MDSARDDFRKAQKYAP-DDKAIRRELRALAEQ-----------EKALYQKQKEMYKGIFKGKDEGGAKS 336 (338)
T ss_dssp ----HHHHHHHHHHTTC--------------------------------------------------------
T ss_pred ----HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 4556666666666533 457787776644221 22345677889999999999988643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.1e-06 Score=65.05 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+..|...|.+++++.|.+..++.++|.+|...|....-+. -+..++... |... .+. ..++..+.
T Consensus 58 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~-~~~~----~~~----------~~~a~~~~ 121 (186)
T 3as5_A 58 VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVP-LLIKVAEAN-PINF----NVR----------FRLGVALD 121 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHC-TTCH----HHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH-HHHHHHhcC-cHhH----HHH----------HHHHHHHH
Confidence 3567888999999999999999999999999887764322 233333322 2211 111 01122222
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
.. .-+.+|.+.|..+++.+|++..++++.|.++...+...+|...|..+++..
T Consensus 122 ~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 122 NL-----GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Hc-----CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 11 225678889999999999999999999999988888777777777776654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=4.9e-06 Score=67.48 Aligned_cols=128 Identities=18% Similarity=0.193 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCCh----------------HHHhhhhhhHHHH
Q 036322 114 MFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSL----------------LAVDQLGNTYLVR 177 (360)
Q Consensus 114 ~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~----------------~Avgn~GNalL~~ 177 (360)
..+..+..+..+...|..++..++ +.+|.++|.+|+++.|.++ .++.++|.+|+..
T Consensus 30 ~~~~~~~~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 101 (198)
T 2fbn_A 30 TDEEKVQSAFDIKEEGNEFFKKNE--------INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666777777888877766554 4578889999999999887 5555555554432
Q ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHH
Q 036322 178 EELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALY 257 (360)
Q Consensus 178 GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALY 257 (360)
|. +.+|...|..|++++|++..++|
T Consensus 102 ~~-------------------------------------------------------~~~A~~~~~~al~~~p~~~~~~~ 126 (198)
T 2fbn_A 102 KD-------------------------------------------------------YPKAIDHASKVLKIDKNNVKALY 126 (198)
T ss_dssp TC-------------------------------------------------------HHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cC-------------------------------------------------------HHHHHHHHHHHHHhCcccHHHHH
Confidence 11 24566678889999999999999
Q ss_pred hHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcC
Q 036322 258 NWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLR 312 (360)
Q Consensus 258 NWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr 312 (360)
+.|.++...+. |.+|++-|+.++.+.+ ..+.++.+.|..+..+.+..
T Consensus 127 ~lg~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 127 KLGVANMYFGF-------LEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHHHHHTC-------HHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccc-------HHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHH
Confidence 99999987666 4556666666666544 45899999999988776543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.1e-06 Score=62.60 Aligned_cols=100 Identities=20% Similarity=0.120 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+.|..+++.+|++..++++-|.++...+.-.+|...|..|+ .+.+ ..+.++++.|.++....
T Consensus 32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-------~~~~-~~~~~~~~la~~~~~~~----- 98 (133)
T 2lni_A 32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI-------QLEP-TFIKGYTRKAAALEAMK----- 98 (133)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH-------HHCT-TCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH-------HhCC-CchHHHHHHHHHHHHHh-----
Confidence 3567778999999999999999999999988777555555555444 4333 45899999999986653
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
-+.+|+..|++++.++|+++.+...|..|...+
T Consensus 99 -------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 99 -------DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp -------CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 367899999999999999999999988886543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=8.4e-06 Score=73.69 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCcCC---------------hHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhh
Q 036322 146 LHKSARLLSQAIAMQHMS---------------LLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGL 210 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s---------------~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~l 210 (360)
+.+|+++|.+|++++|.+ ..++.|+|.+|+..|+
T Consensus 163 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~------------------------------- 211 (336)
T 1p5q_A 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA------------------------------- 211 (336)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC-------------------------------
Confidence 567899999999999999 5777888877664321
Q ss_pred hhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc
Q 036322 211 DYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG 290 (360)
Q Consensus 211 d~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~ 290 (360)
+.+|...|..|++++|++..++||.|.++...+. |.+|++-|++++.+.
T Consensus 212 ------------------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-------~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 212 ------------------------FSAAIESCNKALELDSNNEKGLSRRGEAHLAVND-------FELARADFQKVLQLY 260 (336)
T ss_dssp ------------------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHC
T ss_pred ------------------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHC
Confidence 2456668999999999999999999999988776 455666666666654
Q ss_pred CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 036322 291 NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQ 331 (360)
Q Consensus 291 n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye 331 (360)
+ ..+.++++.|.++..+.... +...++++....++.
T Consensus 261 P-~~~~a~~~l~~~~~~~~~~~----~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 261 P-NNKAAKTQLAVCQQRIRRQL----AREKKLYANMFERLA 296 (336)
T ss_dssp S-SCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 4 45899999999988776532 111335555544443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=5.7e-07 Score=70.02 Aligned_cols=98 Identities=17% Similarity=0.274 Sum_probs=74.9
Q ss_pred HHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChH
Q 036322 238 AGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSK 317 (360)
Q Consensus 238 AgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ssk 317 (360)
+|.-|..++.++|++..++|+-|.++...+.- .+|++-|+.++.+.+ ..|.++++-|.++...-
T Consensus 3 ~~~~l~~al~~~p~~~~~~~~~a~~~~~~g~~-------~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g-------- 66 (142)
T 2xcb_A 3 DGGTLAMLRGLSEDTLEQLYALGFNQYQAGKW-------DDAQKIFQALCMLDH-YDARYFLGLGACRQSLG-------- 66 (142)
T ss_dssp ------CCTTCCHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT--------
T ss_pred cchhHHHHHcCCHHHHHHHHHHHHHHHHHccH-------HHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHh--------
Confidence 56789999999999999999999999887774 455555566666534 46899999999987654
Q ss_pred HHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 318 EKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 318 Ek~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+.+|+..|+.|+.++|+++.+.--+..|-..+.
T Consensus 67 ----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 67 ----LYEQALQSYSYGALMDINEPRFPFHAAECHLQLG 100 (142)
T ss_dssp ----CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred ----hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3678999999999999999999988888876554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.7e-06 Score=69.05 Aligned_cols=101 Identities=22% Similarity=0.220 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhhhCCCch----------------hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHH
Q 036322 234 LLVKAGRKYRLALSIDGNDV----------------RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDA 297 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~----------------~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~A 297 (360)
-+.+|.+.|..|++++|++. .+++|.|.++...+.- .+|++-|+.++.+.+ ..+.+
T Consensus 53 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~al~~~p-~~~~~ 124 (198)
T 2fbn_A 53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY-------PKAIDHASKVLKIDK-NNVKA 124 (198)
T ss_dssp CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHST-TCHHH
T ss_pred CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHhCc-ccHHH
Confidence 35788889999999999988 8999999998877764 555555555555533 45899
Q ss_pred HhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 298 LFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 298 L~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
+++.|.++..+- -+..|+..|++|+.++|+++.+...|..|...+
T Consensus 125 ~~~lg~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 125 LYKLGVANMYFG------------FLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHT------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc------------cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 999999987654 367899999999999999999999999998665
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-05 Score=57.37 Aligned_cols=119 Identities=22% Similarity=0.275 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.+.|.+++...|.+..++.++|.++...|+
T Consensus 18 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------------------------------------------- 50 (136)
T 2fo7_A 18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD----------------------------------------------- 50 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-----------------------------------------------
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC-----------------------------------------------
Confidence 456667777777778777777777765553221
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
+.+|.+.|..++..+|++..++++.|..+...+...+|.++|.+++ ...+ ..+.++++.|..+.
T Consensus 51 --------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~-~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 51 --------YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL-------ELDP-RSAEAWYNLGNAYY 114 (136)
T ss_dssp --------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-------HHCT-TCHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHH-------HhCC-CChHHHHHHHHHHH
Confidence 1334445667777889999999999988888777655555555544 3323 34788888888765
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN 340 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~ 340 (360)
..- -+.+|...|++++.++|++
T Consensus 115 ~~~------------~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 115 KQG------------DYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTT------------CHHHHHHHHHHHHHHSTTC
T ss_pred HHc------------cHHHHHHHHHHHHccCCCC
Confidence 432 2567888888999888874
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-06 Score=71.93 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHh----------------HHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHH
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYN----------------WGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL 298 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYN----------------WGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL 298 (360)
+.+|...|..+++++|++..++|+ -|.++...|. +.+|++-|+.++.+.| ..++++
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~~p-~~~~~~ 91 (208)
T 3urz_A 20 NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN-------YDKAYLFYKELLQKAP-NNVDCL 91 (208)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHCC-CCHHHH
Confidence 467788899999999999999999 7777666665 4566666666666534 569999
Q ss_pred hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 299 FGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 299 ~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
++.|.++...- -+..|+..|++||.++|+++.+...|..|-
T Consensus 92 ~~lg~~~~~~g------------~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 92 EACAEMQVCRG------------QEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHHT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999987654 367899999999999999999998877663
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-06 Score=74.40 Aligned_cols=108 Identities=16% Similarity=0.098 Sum_probs=77.8
Q ss_pred HHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcC-------ChH-----HHhhhhhhHHHHHHHHHHHHH
Q 036322 119 LTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHM-------SLL-----AVDQLGNTYLVREELKLHFSC 186 (360)
Q Consensus 119 v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~-------s~~-----Avgn~GNalL~~GeLKl~~s~ 186 (360)
|.+|..++..|-...+.|+ +..|+.+|.+||+++|+ ++. ++.|+|.+|...|+..
T Consensus 8 ~~~a~~~~~~G~~l~~~g~--------~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~----- 74 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGE--------YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD----- 74 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHH-----
T ss_pred HHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHH-----
Confidence 5567777777776655554 56799999999999999 555 8888887777544333
Q ss_pred HHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhH----HhHHHh
Q 036322 187 KLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRAL----YNWGLA 262 (360)
Q Consensus 187 ~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~AL----YNWGlA 262 (360)
||.+.+..|-+.|..+++++|++++|+ ||-|.|
T Consensus 75 -------------------------------------------eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~a 111 (159)
T 2hr2_A 75 -------------------------------------------EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALA 111 (159)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHH
Confidence 222223333334777777799999999 999999
Q ss_pred hhcccchhcHHHHHHHHHHHHHHHHhc
Q 036322 263 LFFLETAFDADKIFSAAIDNFDAMMLK 289 (360)
Q Consensus 263 L~~~~~a~eAe~L~~aA~dKY~AAl~~ 289 (360)
|...+. |.+|++-|+.++.+
T Consensus 112 L~~lgr-------~eEAl~~y~kAlel 131 (159)
T 2hr2_A 112 LDGLGR-------GAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHTTC-------HHHHHHHHHHHHHH
T ss_pred HHHCCC-------HHHHHHHHHHHHhc
Confidence 998777 46667777777765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.6e-06 Score=71.50 Aligned_cols=194 Identities=12% Similarity=0.033 Sum_probs=117.5
Q ss_pred HHHHHhhhhHHHHhhhhc-----CCchHHHHHHH-------------HHHHHHHHHHHHcCcCC------hHHHhhhhhh
Q 036322 118 YLTEANDLPKHAKECMKS-----GWDEERAEMIL-------------HKSARLLSQAIAMQHMS------LLAVDQLGNT 173 (360)
Q Consensus 118 ~v~ea~~Llk~are~~~~-----~~De~~Ad~lL-------------~~Aa~~~s~Al~~~P~s------~~Avgn~GNa 173 (360)
.+.+|.+++++|...+++ +.|...|-.++ .+|+.+|.+|+++.|.. ..++.|+|++
T Consensus 6 ~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~ 85 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMM 85 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456888888888876652 23444443332 35666778888886543 5688999999
Q ss_pred HHHHHHHHHHHHH---HHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCC
Q 036322 174 YLVREELKLHFSC---KLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDG 250 (360)
Q Consensus 174 lL~~GeLKl~~s~---~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp 250 (360)
|...|+...-+.. .|.. ....+.+ .....++. +++.+... .-+.+|..-|..|+++.|
T Consensus 86 ~~~~g~~~~A~~~~~~Al~l-~~~~g~~--~~~a~~~~----------~lg~~~~~------g~~~~A~~~~~~Al~~~~ 146 (307)
T 2ifu_A 86 LKDLQRMPEAVQYIEKASVM-YVENGTP--DTAAMALD----------RAGKLMEP------LDLSKAVHLYQQAAAVFE 146 (307)
T ss_dssp HHHTTCGGGGHHHHHHHHHH-HHTTTCH--HHHHHHHH----------HHHHHHTT------TCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHH-HHHcCCH--HHHHHHHH----------HHHHHHHc------CCHHHHHHHHHHHHHHHH
Confidence 9987776544322 2211 1111100 00011111 12222211 225667778888888776
Q ss_pred Cc------hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHH
Q 036322 251 ND------VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQ 324 (360)
Q Consensus 251 ~d------~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~ 324 (360)
.. ..+++|.|.++...|.-.+|...|.+|++.+...-. ......++++.|+.+..+- -+.
T Consensus 147 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~g~~~~~~g------------~~~ 212 (307)
T 2ifu_A 147 NEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN--YPTCYKKCIAQVLVQLHRA------------DYV 212 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTT------------CHH
T ss_pred hCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHcC------------CHH
Confidence 54 578999999999888888888888888877653211 0011346777777654332 257
Q ss_pred HHHHHHHHhhccCCCchHHHH
Q 036322 325 QARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 325 qA~~kye~ALrLdpd~~qa~~ 345 (360)
+|+..|++++ ++|+.+...+
T Consensus 213 ~A~~~~~~al-~~p~~~~~~e 232 (307)
T 2ifu_A 213 AAQKCVRESY-SIPGFSGSED 232 (307)
T ss_dssp HHHHHHHHHT-TSTTSTTSHH
T ss_pred HHHHHHHHHh-CCCCCCCCHH
Confidence 8899999999 9998776543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.8e-06 Score=62.02 Aligned_cols=98 Identities=22% Similarity=0.127 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhhhCCCc---hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGND---VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d---~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
+.+|.+.|..+++++|++ ..++++.|.++...+.-. +|++-|+.++.+.+ ..+.++++.|.++..+-
T Consensus 44 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~-- 113 (148)
T 2dba_A 44 YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD-------KAETEASKAIEKDG-GDVKALYRRSQALEKLG-- 113 (148)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHHTS-CCHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHH-------HHHHHHHHHHhhCc-cCHHHHHHHHHHHHHcC--
Confidence 467788999999999998 999999999988777644 44555555555433 34899999999987654
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
-+.+|+..|++++.++|+++.+...+..+..
T Consensus 114 ----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 114 ----------RLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp ----------CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred ----------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 3677899999999999999999999887754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=3.1e-06 Score=74.30 Aligned_cols=107 Identities=16% Similarity=0.105 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHH---------------------------HHHHHHHHHh
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSA---------------------------AIDNFDAMML 288 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~a---------------------------A~dKY~AAl~ 288 (360)
.+|...|+.+++.+|++.+|+++-|.++...|...+|..+|.. |++.|++++.
T Consensus 134 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~ 213 (287)
T 3qou_A 134 TDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA 213 (287)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHh
Confidence 4566688899999999999999999988876666666555544 5777888888
Q ss_pred ccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc--hHHHHHHHhhhhhcc
Q 036322 289 KGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN--LQVREALSSCMSELN 355 (360)
Q Consensus 289 ~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~--~qa~~Al~~c~~el~ 355 (360)
. ++..++++++-|.+|...- -+.+|...|+++|+++|++ ++++..|..+-..+.
T Consensus 214 ~-~P~~~~~~~~la~~l~~~g------------~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 214 E-NPEDAALATQLALQLHQVG------------RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp H-CTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred c-CCccHHHHHHHHHHHHHcc------------cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 6 4466999999999987654 3567899999999999999 889998888876654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.2e-06 Score=65.10 Aligned_cols=98 Identities=13% Similarity=0.126 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+.|..+++++|++..++++.|.++...+.- .+|++-|+.++.+.+ ..+.+++++|.++...-
T Consensus 29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~----- 95 (166)
T 1a17_A 29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY-------GYALGDATRAIELDK-KYIKGYYRRAASNMALG----- 95 (166)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhc-----
Confidence 56788899999999999999999999998887664 455555555555433 45899999999987654
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
-+.+|+..|++++.++|+++.+..-+..|..
T Consensus 96 -------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 96 -------KFRAALRDYETVVKVKPHDKDAKMKYQECNK 126 (166)
T ss_dssp -------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 2667899999999999999998866666643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-05 Score=71.78 Aligned_cols=194 Identities=11% Similarity=-0.027 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcc---hHHHHHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVIS---VEEQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s---~~~~~r~~~~ld~~~~~k~~~~~ 222 (360)
+.+|.+.|.+++...|. ..++.++|.+|...|....-+. .++.++... |.. ....+.+...... .....+.-.
T Consensus 253 ~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~ 328 (514)
T 2gw1_A 253 PLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYN-YFDKALKLD-SNNSSVYYHRGQMNFILQN-YDQAGKDFD 328 (514)
T ss_dssp HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGG-HHHHHHTTC-TTCTHHHHHHHHHHHHTTC-TTHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHH-HHHHHhhcC-cCCHHHHHHHHHHHHHhCC-HHHHHHHHH
Confidence 46899999999999999 9999999999999887654322 233333322 222 1122333222111 111111100
Q ss_pred HHHHh--------hHHHH-----HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhc
Q 036322 223 LLVDA--------CEECE-----ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLK 289 (360)
Q Consensus 223 aL~~~--------~eEaE-----eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~ 289 (360)
.++.. ...+. .-+.+|.+.|..+++.+|++..++++.|.++...|...+|...|..+++....-..
T Consensus 329 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~- 407 (514)
T 2gw1_A 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG- 407 (514)
T ss_dssp HHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS-
T ss_pred HHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch-
Confidence 00000 00000 22466777888888999999999999999988888777777777776655421000
Q ss_pred cCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 290 GNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 290 ~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
....+.++++.|..+..... ..-+.+|+..|+.++.++|+++.+...|..|-..+
T Consensus 408 -~~~~~~~~~~l~~~~~~~~~---------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 408 -IYVGIAPLVGKATLLTRNPT---------VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp -CSSCSHHHHHHHHHHHTSCC---------TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHhhhhh---------cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 00013488999988765210 12467899999999999999999998888876554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.9e-05 Score=64.10 Aligned_cols=192 Identities=13% Similarity=0.022 Sum_probs=114.8
Q ss_pred chHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHH-cCcCChHHHhhhhhhHHHHHHHHHHHHHHHH
Q 036322 111 DDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIA-MQHMSLLAVDQLGNTYLVREELKLHFSCKLR 189 (360)
Q Consensus 111 d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~-~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr 189 (360)
+....+.+..-|.-+.++ .+...|..++.++.+++.+... -.|....++.++|++|...|+...-+.- ++
T Consensus 23 ~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~ 93 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQ--------GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANL-LN 93 (311)
T ss_dssp SCHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHH-HH
T ss_pred chHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH-HH
Confidence 334456666666555542 2444555555555555544431 3688889999999999999887754321 12
Q ss_pred HHhcc------CCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh--hHHHHHHHHHHHHHHHHHhhh-CCCchhhHHhHH
Q 036322 190 RLLLE------GDVISVEEQKRILKGLDYQFMNKDKIASLLVDA--CEECEELLVKAGRKYRLALSI-DGNDVRALYNWG 260 (360)
Q Consensus 190 ~lla~------~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~--~eEaEeLL~eAgrKY~~Al~~-dp~d~~ALYNWG 260 (360)
.++.- .+++ ....+.. .++..+... -++|.+.+..|.+.+...... .|....++++.|
T Consensus 94 ~al~~~~~~~~~~~~---~~~~~~~----------~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 94 DALAIREKTLGKDHP---AVAATLN----------NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp HHHHHHHHHHCTTCH---HHHHHHH----------HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCh---HHHHHHH----------HHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 22211 1111 1111111 122222222 355556555555555443222 367788999999
Q ss_pred HhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 036322 261 LALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRL 329 (360)
Q Consensus 261 lAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~k 329 (360)
.++...+.-.+|..+|..|++.++......+...+.++++.|..+...-. ..++.+.++++...
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-----FKQAETLYKEILTR 224 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHH
Confidence 99999999889999999999888754332233456788999988876643 45777777777764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.37 E-value=5.3e-06 Score=65.21 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=83.9
Q ss_pred HHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHc------------------CcCChHHHhhhhhhHHHHHHH
Q 036322 119 LTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAM------------------QHMSLLAVDQLGNTYLVREEL 180 (360)
Q Consensus 119 v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~------------------~P~s~~Avgn~GNalL~~GeL 180 (360)
+..+..+..+|....+.++ +..|+..|.+|+.+ +|....++.|+|.+|+..|.
T Consensus 8 ~~~a~~~~~~G~~~~~~~~--------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~- 78 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKD--------YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD- 78 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-
Confidence 4556666666666665554 45677888888888 77778888888887775322
Q ss_pred HHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHH
Q 036322 181 KLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWG 260 (360)
Q Consensus 181 Kl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWG 260 (360)
+.+|..-|..||+++|+..+|+|+-|
T Consensus 79 ------------------------------------------------------~~~A~~~~~~al~~~p~~~~a~~~~g 104 (162)
T 3rkv_A 79 ------------------------------------------------------LHEAEETSSEVLKREETNEKALFRRA 104 (162)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred ------------------------------------------------------HHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 23455578889999999999999999
Q ss_pred HhhhcccchhcHHHHHHHHHHHHHHHHhccCCChh-HHHhhHHHHHHHhh
Q 036322 261 LALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAP-DALFGWAVALQQRS 309 (360)
Q Consensus 261 lAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap-~AL~NWGlALqerA 309 (360)
.++...|. |.+|++-|+.++.+.|. .+ .+....+.....+.
T Consensus 105 ~~~~~~g~-------~~~A~~~~~~al~l~p~-~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 105 KARIAAWK-------LDEAEEDLKLLLRNHPA-AASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHTTC-------HHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-------HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHH
Confidence 99988776 45667777777776443 34 44555555544433
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-05 Score=73.66 Aligned_cols=99 Identities=10% Similarity=-0.028 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+-|..+++++|++..++++.|.++...|...+|.++|.++ +...+ ..+.++++-|.++...-
T Consensus 389 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~~~l~~~~~~~g----- 455 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA-------ARLFQ-GTHLPYLFLGMQHMQLG----- 455 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-------HHTTT-TCSHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCc-cchHHHHHHHHHHHHcC-----
Confidence 466777888888899999999999998888877755555555544 44333 34788888888875543
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
.+..|...|+.++.++|+++.+...+..|-..
T Consensus 456 -------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 456 -------NILLANEYLQSSYALFQYDPLLLNELGVVAFN 487 (597)
T ss_dssp -------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 46678888888888999999888777666544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.34 E-value=6e-06 Score=61.03 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhhhCCCch---hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGNDV---RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~---~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
+.+|.+.|..+++.+|++. .++|+-|.++...+.-.+|...|..+++.+- .+...|+++++.|.++....
T Consensus 18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~la~~~~~~g-- 90 (129)
T 2xev_A 18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-----THDKAAGGLLKLGLSQYGEG-- 90 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TSTTHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-----CCcccHHHHHHHHHHHHHcC--
Confidence 4667778889999999998 8999999988887775555555555544331 12233899999999987654
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
-+.+|+..|+.++.+.|+++.+..|+..+.
T Consensus 91 ----------~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 91 ----------KNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp ----------CHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 267899999999999999999999877654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.6e-06 Score=72.40 Aligned_cols=184 Identities=14% Similarity=0.057 Sum_probs=105.7
Q ss_pred HHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCCh----HHHhhhhhhHHHHHHHHHHHHHHHHHHhc--
Q 036322 120 TEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSL----LAVDQLGNTYLVREELKLHFSCKLRRLLL-- 193 (360)
Q Consensus 120 ~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~----~Avgn~GNalL~~GeLKl~~s~~Lr~lla-- 193 (360)
..+..|+..|...+..++ +..|..+|.+|+++.|.++ .++.++|.+|...|....-+.. ++.++.
T Consensus 46 ~~~~~l~~~g~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~ 116 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGD--------CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQY-HKHDLTLA 116 (411)
T ss_dssp HHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHH
Confidence 344455555555544443 4467888999999999998 5899999999998887654322 111111
Q ss_pred -cCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh--hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccc--
Q 036322 194 -EGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA--CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLET-- 268 (360)
Q Consensus 194 -~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~--~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~-- 268 (360)
.... ......+.. .++..+... -++|.+.+..|.+.+... .-.|....++++.|..+...+.
T Consensus 117 ~~~~~--~~~~~~~~~----------~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 183 (411)
T 4a1s_A 117 KSMND--RLGEAKSSG----------NLGNTLKVMGRFDEAAICCERHLTLARQL-GDRLSEGRALYNLGNVYHAKGKHL 183 (411)
T ss_dssp HHTTC--HHHHHHHHH----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccC--chHHHHHHH----------HHHHHHHHCCCHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHcCccc
Confidence 1100 011111111 122222222 234444444443333321 1156778899999999988776
Q ss_pred --------hhcHHHHHHHHHHHHHHHHhcc-----CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q 036322 269 --------AFDADKIFSAAIDNFDAMMLKG-----NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 269 --------a~eAe~L~~aA~dKY~AAl~~~-----n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~ky 330 (360)
..+|...|.+|++-|+.++.+. +...+.++++.|..+...-. -.++.+.+++|...+
T Consensus 184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD-----FQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHHH
Confidence 7778888888888888877642 11224688888887765432 344444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-05 Score=58.31 Aligned_cols=119 Identities=9% Similarity=0.044 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 036322 111 DDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRR 190 (360)
Q Consensus 111 d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~ 190 (360)
.......+...|..+.++++ +..|.++|.++++++|.+..++.++|.+|...|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~---------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~----------- 65 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGD---------------YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE----------- 65 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTC---------------SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC-----------
T ss_pred CcccHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc-----------
Confidence 44446666666666555222 3467888999999999999999999977764221
Q ss_pred HhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchh
Q 036322 191 LLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAF 270 (360)
Q Consensus 191 lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~ 270 (360)
+.+|.+.|..++.++|++..++++.|.++...+.-.
T Consensus 66 --------------------------------------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~ 101 (133)
T 2lni_A 66 --------------------------------------------FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYT 101 (133)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred --------------------------------------------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHH
Confidence 133445677888889999999999999988877654
Q ss_pred cHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 271 DADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 271 eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
+|...|. .++...+ ..++++++.|..+..
T Consensus 102 ~A~~~~~-------~~~~~~p-~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 102 KAMDVYQ-------KALDLDS-SCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHH-------HHHHHCG-GGTHHHHHHHHHHHH
T ss_pred HHHHHHH-------HHHHhCC-CchHHHHHHHHHHHH
Confidence 4444444 4444322 347888888887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.5e-05 Score=56.71 Aligned_cols=98 Identities=22% Similarity=0.316 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRN 315 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~s 315 (360)
..|.+-|..++..+|++..++++.|.++...+...+|..+|..+++ +.+ ..+.++++.|..+....
T Consensus 26 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-------~~~-~~~~~~~~la~~~~~~~------ 91 (125)
T 1na0_A 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-------LDP-NNAEAWYNLGNAYYKQG------ 91 (125)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCT-TCHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------hCC-ccHHHHHHHHHHHHHhc------
Confidence 4556677888888999999999999998887776666666655554 323 35889999998876543
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 316 SKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
-+..|+..|+.++.++|+++.+...|..|..+
T Consensus 92 ------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 92 ------DYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp ------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 25778999999999999999999998877544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=3.8e-06 Score=66.93 Aligned_cols=101 Identities=6% Similarity=0.010 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+..|...|..++..+|+...++|+-|......+. |.+|++-|+.++.+ ++..|+++++.|..+...-
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~-------~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~~----- 79 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE-------YDLAKKYICTYINV-QERDPKAHRFLGLLYELEE----- 79 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC-------HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-----
Confidence 3567779999999999999999999888777666 56677777777776 4456999999999987654
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+.+|+..|+.||.++|+++.+..-|..|-.+++
T Consensus 80 -------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 80 -------NTDKAVECYRRSVELNPTQKDLVLKIAELLCKND 113 (150)
T ss_dssp -------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred -------chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3678999999999999999999999888766554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-05 Score=75.48 Aligned_cols=142 Identities=17% Similarity=0.235 Sum_probs=90.3
Q ss_pred HHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCC---------------hHHHhhhhhhHHHHHHHHHHH
Q 036322 120 TEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMS---------------LLAVDQLGNTYLVREELKLHF 184 (360)
Q Consensus 120 ~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s---------------~~Avgn~GNalL~~GeLKl~~ 184 (360)
..+..+...|..+.+.++ +..|+++|.+|++++|.+ ..+++|+|.+|+..|+
T Consensus 266 ~~a~~~~~~G~~~~~~g~--------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~----- 332 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGK--------YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE----- 332 (457)
T ss_dssp HHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 334444455555444333 567899999999999998 5777777766664221
Q ss_pred HHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhh
Q 036322 185 SCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALF 264 (360)
Q Consensus 185 s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~ 264 (360)
+.+|...|..|++++|+..+||||-|.++.
T Consensus 333 --------------------------------------------------~~~A~~~~~~al~~~p~~~~a~~~~g~a~~ 362 (457)
T 1kt0_A 333 --------------------------------------------------YTKAVECCDKALGLDSANEKGLYRRGEAQL 362 (457)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred --------------------------------------------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 245666889999999999999999999998
Q ss_pred cccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCC
Q 036322 265 FLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSD 339 (360)
Q Consensus 265 ~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd 339 (360)
..+. |.+|+.-|++++.+.+ ..+.++++.|.++..+.... ++.+ +...++|.++..+++.
T Consensus 363 ~~g~-------~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~-----~a~~--~~~~~~f~k~~~~d~~ 422 (457)
T 1kt0_A 363 LMNE-------FESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHN-----ERDR--RIYANMFKKFAEQDAK 422 (457)
T ss_dssp HTTC-------HHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH-----HHHH--HHHHHC----------
T ss_pred HccC-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH-----HHHH--HHHHHHHhhhhhcccc
Confidence 8665 5667777777777644 55899999999988776532 2221 2333455555555543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.5e-06 Score=76.97 Aligned_cols=179 Identities=15% Similarity=0.042 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHcCcCChHHHhhh-------hhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHh-hh----hhhhhc
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQL-------GNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRIL-KG----LDYQFM 215 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~-------GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~-~~----ld~~~~ 215 (360)
.|.+.|.+|++++|+..+|..++ |++|...++...-+-. ++..+.=. |... ..++. -| +.-++.
T Consensus 24 ~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~-~~~~l~l~-p~~l--~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 24 RSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQ-LSGSVQIS-MSTL--NARIAIGGLYGDITYPVT 99 (282)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTH-HHHTTTCC-GGGG--CCEEECCTTTCCCEEECS
T ss_pred HHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHH-HHHHhcCC-hhhh--hhhhccCCcccccccccC
Confidence 46679999999999999999999 8998876665433332 22222211 1100 01111 12 333334
Q ss_pred chhHH----HHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHH------------------
Q 036322 216 NKDKI----ASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDAD------------------ 273 (360)
Q Consensus 216 ~k~~~----~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe------------------ 273 (360)
+++.+ +.+|+..+ =+.+|-+-|..++..+|++. +.|+.|+.....++-.+|.
T Consensus 100 ~r~dl~LayA~~L~~~g-----~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQG-----NYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp SHHHHHHHHHHHHHHHT-----CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred CHhHHHHHHHHHHHHCC-----CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 44443 44444333 12333344555555566665 6666665444322211111
Q ss_pred -----------HHHHHHHHHHHHHHhcc--CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc
Q 036322 274 -----------KIFSAAIDNFDAMMLKG--NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN 340 (360)
Q Consensus 274 -----------~L~~aA~dKY~AAl~~~--n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~ 340 (360)
..|.+|++-|++++.-. +...++|+++-|++|..+-+ ...|+..|++++.++|+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr------------~deA~~~l~~a~a~~P~- 240 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN------------ESAAVALLEWLQTTHPE- 240 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCc-
Confidence 12455555666555422 22257788888888877763 35688899999999999
Q ss_pred hHHHHHHHh
Q 036322 341 LQVREALSS 349 (360)
Q Consensus 341 ~qa~~Al~~ 349 (360)
+++..||..
T Consensus 241 ~~~~~aL~~ 249 (282)
T 4f3v_A 241 PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999999864
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.27 E-value=3e-06 Score=81.14 Aligned_cols=140 Identities=15% Similarity=0.137 Sum_probs=96.4
Q ss_pred HHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch
Q 036322 121 EANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV 200 (360)
Q Consensus 121 ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~ 200 (360)
.+..+...|......++ +.+|.+.|.+|++++|.+..++.++|.+|...|+
T Consensus 5 ~a~~~~~lg~~~~~~g~--------~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~--------------------- 55 (477)
T 1wao_1 5 RAEELKTQANDYFKAKD--------YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------------------- 55 (477)
T ss_dssp HHTTSSSSSSSTTTTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC---------------------
Confidence 34444444544444333 4578899999999999999999999988875322
Q ss_pred HHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHH
Q 036322 201 EEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAI 280 (360)
Q Consensus 201 ~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~ 280 (360)
+.+|.+.|..|++++|++..+++|-|.++...+.-.+|.+.
T Consensus 56 ----------------------------------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~----- 96 (477)
T 1wao_1 56 ----------------------------------YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD----- 96 (477)
T ss_dssp ----------------------------------HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHH-----
T ss_pred ----------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-----
Confidence 13455578899999999999999999999887775555554
Q ss_pred HHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH-----------HhhccCCCch
Q 036322 281 DNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQ-----------DALHMNSDNL 341 (360)
Q Consensus 281 dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye-----------~ALrLdpd~~ 341 (360)
|++++.+.+ ..++++++.|.+..... ..-+++|+..|+ +++.++|++.
T Consensus 97 --~~~al~~~p-~~~~~~~~l~~~~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 97 --YETVVKVKP-HDKDAKMKYQECNKIVK----------QKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp --HHHHHHHST-TCTTHHHHHHHHHHHHH----------HHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred --HHHHHHhCC-CCHHHHHHHHHHHHHHH----------HHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 444555433 45789999888743322 345778888899 9999998864
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.8e-05 Score=66.20 Aligned_cols=165 Identities=9% Similarity=-0.043 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
+|.+.|.+|++. .++.|.++||..|...|..+.-+. -++.++....|.....-+.+... . .+
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~-~~~~a~~~g~~~a~~~lg~~y~~-~-g~------------- 65 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEY-WAQKAAAQGDGDALALLAQLKIR-N-PQ------------- 65 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHTTCHHHHHHHHHHTTS-S-TT-------------
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHc-C-CC-------------
Confidence 356777888775 788999999999888665553322 22333333222222222222221 0 01
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc----ccchhcHHHHHHHHHHHHHHHHhccCC-ChhHHHhhHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF----LETAFDADKIFSAAIDNFDAMMLKGNI-YAPDALFGWA 302 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~----~~~a~eAe~L~~aA~dKY~AAl~~~n~-~ap~AL~NWG 302 (360)
+.-+.+|.+-|..| .++++..|+||.|..+.. +++...|..+ |+.++..++. ..|.|+++.|
T Consensus 66 ----~~~~~~A~~~~~~A--~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~-------~~~A~~~~~~~~~~~a~~~Lg 132 (212)
T 3rjv_A 66 ----QADYPQARQLAEKA--VEAGSKSGEIVLARVLVNRQAGATDVAHAITL-------LQDAARDSESDAAVDAQMLLG 132 (212)
T ss_dssp ----SCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHH-------HHHHTSSTTSHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHcCCCCccCHHHHHHH-------HHHHHHcCCCcchHHHHHHHH
Confidence 11234555566666 347899999999999887 5554444444 4444454441 2379999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 303 VALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 303 lALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
..+..--.+.. =..+|+..|+.|+.+ |+++.+...|..|-.
T Consensus 133 ~~y~~g~g~~~--------d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 133 LIYASGVHGPE--------DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHHHHTSSSSC--------CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred HHHHcCCCCCC--------CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 99876433222 245678888888888 777777777766643
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=4.6e-05 Score=53.90 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=76.2
Q ss_pred hhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHH
Q 036322 123 NDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEE 202 (360)
Q Consensus 123 ~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~ 202 (360)
..+...|..++..++ +..|.++|.+++.+.|.++.++.++|.+|...|..
T Consensus 5 ~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---------------------- 54 (118)
T 1elw_A 5 NELKEKGNKALSVGN--------IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY---------------------- 54 (118)
T ss_dssp HHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------------------
T ss_pred HHHHHHHHHHHHccc--------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH----------------------
Confidence 344445555544333 45678889999999999999999999887753221
Q ss_pred HHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 203 QKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 203 ~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
.+|...|..+++++|++..++++.|.++...+.. .+|++-
T Consensus 55 ---------------------------------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~ 94 (118)
T 1elw_A 55 ---------------------------------QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF-------EEAKRT 94 (118)
T ss_dssp ---------------------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH-------HHHHHH
Confidence 2344467778888899899999998888776664 445555
Q ss_pred HHHHHhccCCChhHHHhhHHHHH
Q 036322 283 FDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 283 Y~AAl~~~n~~ap~AL~NWGlAL 305 (360)
|+.++...+ ..|.++++.|...
T Consensus 95 ~~~~~~~~~-~~~~~~~~l~~~~ 116 (118)
T 1elw_A 95 YEEGLKHEA-NNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCHHHHHHHHHhh
Confidence 555555433 4477777776653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.4e-06 Score=67.00 Aligned_cols=107 Identities=12% Similarity=0.021 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHH---------------------------HHHHHHHHHHh
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFS---------------------------AAIDNFDAMML 288 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~---------------------------aA~dKY~AAl~ 288 (360)
.+|...|+.+++++|++..++++-|.++...|...+|...|. .|++-|++++.
T Consensus 23 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 102 (176)
T 2r5s_A 23 AQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELA 102 (176)
T ss_dssp HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 445556666666677777777766666655332222222111 24666777777
Q ss_pred ccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc--hHHHHHHHhhhhhcc
Q 036322 289 KGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN--LQVREALSSCMSELN 355 (360)
Q Consensus 289 ~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~--~qa~~Al~~c~~el~ 355 (360)
+.| ..|+++++.|.++...- -+.+|+..|+++|+++|+. +.+...|..|...+.
T Consensus 103 ~~P-~~~~~~~~la~~~~~~g------------~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 103 ANP-DNFELACELAVQYNQVG------------RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HST-TCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred hCC-CCHHHHHHHHHHHHHcc------------cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 533 56899999999976544 3677899999999999986 668888877766553
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.24 E-value=3.6e-05 Score=64.21 Aligned_cols=169 Identities=12% Similarity=-0.031 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCcCCh---HHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch------HHHHHHhhhhhhhhcc
Q 036322 146 LHKSARLLSQAIAMQHMSL---LAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV------EEQKRILKGLDYQFMN 216 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~---~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~------~~~~r~~~~ld~~~~~ 216 (360)
+.+|+..|.+++...|.++ .|++++|.+|...|....-+. .++.++... |.+. ...+.+...+....
T Consensus 20 ~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~-~~~~~l~~~-P~~~~~~~a~~~~g~~~~~~~~~~-- 95 (225)
T 2yhc_A 20 WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQA-AIDRFIRLN-PTHPNIDYVMYMRGLTNMALDDSA-- 95 (225)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHC-cCCCcHHHHHHHHHHHHHhhhhhh--
Confidence 4578899999999999875 799999999999888765433 334444332 2211 11111111110000
Q ss_pred hhHHHHHHHHhhH--HHHHHHHHHHHHHHHHhhhCCCchhhHH-----------------hHHHhhhcccchhcHHHHHH
Q 036322 217 KDKIASLLVDACE--ECEELLVKAGRKYRLALSIDGNDVRALY-----------------NWGLALFFLETAFDADKIFS 277 (360)
Q Consensus 217 k~~~~~aL~~~~e--EaEeLL~eAgrKY~~Al~~dp~d~~ALY-----------------NWGlAL~~~~~a~eAe~L~~ 277 (360)
...+...+. .-..-+.+|...|+.+++.+|++..+.. +-|..+...+. |.
T Consensus 96 ----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~-------~~ 164 (225)
T 2yhc_A 96 ----LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA-------WV 164 (225)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------HH
T ss_pred ----hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------HH
Confidence 000000000 0013467888999999999999987652 22322222333 45
Q ss_pred HHHHHHHHHHhccC--CChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCch
Q 036322 278 AAIDNFDAMMLKGN--IYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNL 341 (360)
Q Consensus 278 aA~dKY~AAl~~~n--~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~ 341 (360)
+|+.-|+.++..-| ...|+|+++-|.++..+- -..+|+..|+.++...|++.
T Consensus 165 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g------------~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 165 AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQ------------MNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcC------------CcHHHHHHHHHHHhhCCCch
Confidence 66666666665422 234689999999987765 35567788888888888763
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.1e-05 Score=73.59 Aligned_cols=114 Identities=10% Similarity=-0.095 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHH-------HHHHHH------HHHHHHHHHhccCCCcchHHHHHHhhhhhhh
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLV-------REELKL------HFSCKLRRLLLEGDVISVEEQKRILKGLDYQ 213 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~-------~GeLKl------~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~ 213 (360)
..+..+|.+|+..+|.++++..++|..+.. .|.+.. +...-++.++..-.|.+..-|-....
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~----- 329 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD----- 329 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHH-----
Confidence 356789999999999999999999998876 455431 22223344443222333222211111
Q ss_pred hcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCch-hhHHhHHHhhhcccchhcHHHHHHHH
Q 036322 214 FMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDV-RALYNWGLALFFLETAFDADKIFSAA 279 (360)
Q Consensus 214 ~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~-~ALYNWGlAL~~~~~a~eAe~L~~aA 279 (360)
.+... .-+.+|-.-|..|++++|+++ .++.+||..+...+...+|.++|..|
T Consensus 330 ---------~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 330 ---------YEESR-----MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp ---------HHHHT-----TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHhc-----CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 11000 123455566777777777774 57777777665544434444444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.22 E-value=5e-05 Score=63.72 Aligned_cols=165 Identities=13% Similarity=0.101 Sum_probs=100.4
Q ss_pred HHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHH
Q 036322 154 SQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEE 233 (360)
Q Consensus 154 s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEe 233 (360)
+...+++|.++.+++++|.+++..|....-+. .++.++... |.+. ....+.- .++.++.. ..
T Consensus 5 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~-~~~~~l~~~-p~~~-~~~~a~~----------~lg~~~~~-----~~ 66 (261)
T 3qky_A 5 AGSGRLRHSSPQEAFERAMEFYNQGKYDRAIE-YFKAVFTYG-RTHE-WAADAQF----------YLARAYYQ-----NK 66 (261)
T ss_dssp ------CCSSHHHHHHHHHHHHHTTCHHHHHH-HHHHHGGGC-SCST-THHHHHH----------HHHHHHHH-----TT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhC-CCCc-chHHHHH----------HHHHHHHH-----hC
Confidence 34567899999999999999999888765433 345555443 3221 0011111 11111111 12
Q ss_pred HHHHHHHHHHHHhhhCCCc---hhhHHhHHHhhhc--------ccchhcHHHHHHHHHHHHHHHHhccCCChhHHH----
Q 036322 234 LLVKAGRKYRLALSIDGND---VRALYNWGLALFF--------LETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL---- 298 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d---~~ALYNWGlAL~~--------~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL---- 298 (360)
-+.+|...|..++++.|++ ..|+|+=|.++.. .+...+|...|..+++.|- .+.+.+.++
T Consensus 67 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~a~~~~~ 141 (261)
T 3qky_A 67 EYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-----NHELVDDATQKIR 141 (261)
T ss_dssp CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-----TCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-----CchhHHHHHHHHH
Confidence 3677888999999998854 6789999998876 5555555555555555442 223445555
Q ss_pred ----------hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchH---HHHHHHhhhhh
Q 036322 299 ----------FGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQ---VREALSSCMSE 353 (360)
Q Consensus 299 ----------~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~q---a~~Al~~c~~e 353 (360)
++.|..+..+- -+.+|+..|+.+|.++|+++. +.--|..|-..
T Consensus 142 ~~~~~~~~~~~~la~~~~~~g------------~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~ 197 (261)
T 3qky_A 142 ELRAKLARKQYEAARLYERRE------------LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIA 197 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 77777765543 367899999999999999654 44445555443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=4.7e-06 Score=64.55 Aligned_cols=82 Identities=20% Similarity=0.061 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|+..|.+|++++|.+..+++++|.+|...|+.
T Consensus 33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~--------------------------------------------- 67 (121)
T 1hxi_A 33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD--------------------------------------------- 67 (121)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH---------------------------------------------
Confidence 34688899999999999999999999887753321
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhc
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLK 289 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~ 289 (360)
.+|...|++|++++|++..++++-|.++...|.. .+|++-|+.++.+
T Consensus 68 ----------~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~ 114 (121)
T 1hxi_A 68 ----------GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA-------NAALASLRAWLLS 114 (121)
T ss_dssp ----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHC-
T ss_pred ----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh
Confidence 3455678999999999999999999998875554 4555555555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.4e-06 Score=64.41 Aligned_cols=90 Identities=14% Similarity=0.096 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhh---CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcC
Q 036322 236 VKAGRKYRLALSI---DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLR 312 (360)
Q Consensus 236 ~eAgrKY~~Al~~---dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr 312 (360)
.+|...|..|+++ +|++..+++|-|.++...+. |.+|++-|++++.+.+ ..|+++++.|.++..+-+
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~-- 76 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE-------YRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGR-- 76 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCC--
Confidence 4567789999999 79999999999999988777 4556666666666534 459999999999877653
Q ss_pred CCChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 313 PRNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 313 ~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
+.+|+..|++||.++|+++.+..
T Consensus 77 ----------~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 77 ----------YEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp ----------HHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ----------HHHHHHHHHHHHHhCCCcHHHHH
Confidence 56788899999999999998764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-05 Score=56.87 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+..|...|..++..+|++..++++-|.++...+.-.+|...|..+++.+..-.. .....+.++++.|.++...-
T Consensus 20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~----- 93 (131)
T 1elr_A 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-DYRQIAKAYARIGNSYFKEE----- 93 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch-hHHHHHHHHHHHHHHHHHhc-----
Confidence 466777889999999999999999999998888877777777777766531100 00011789999999876543
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
-+..|+..|+.++.++| ++.+...+..|...+.
T Consensus 94 -------~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 94 -------KYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp -------CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 36778999999999999 5999999998877654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.5e-06 Score=63.72 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|+..|.+||+++|.++.++.|+|.+|+..|+.
T Consensus 24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~--------------------------------------------- 58 (127)
T 4gcn_A 24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF--------------------------------------------- 58 (127)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhH---------------------------------------------
Confidence 56789999999999999999999999998864332
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchh-------hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVR-------ALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL 298 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~-------ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL 298 (360)
.+|.+-|..|++++|+... +|+|-|.++...+. |.+|++-|+.++...+ .|+.+
T Consensus 59 ----------~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~-------~~~A~~~~~kal~~~~--~~~~~ 119 (127)
T 4gcn_A 59 ----------AECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQND-------LSLAVQWFHRSLSEFR--DPELV 119 (127)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHSC--CHHHH
T ss_pred ----------HHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCc--CHHHH
Confidence 2344467777888777654 56666665544443 6777777877777544 26654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00014 Score=60.90 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLV 176 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~ 176 (360)
+|.+.|.+|++++ ++.+.+++|.+|..
T Consensus 60 ~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 60 KAASFYAKACDLN--YSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHhC
Confidence 4555666666553 56666666666665
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00016 Score=60.56 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHH----HHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLV----REELKL 182 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~----~GeLKl 182 (360)
+.+|.++|.+|++ |.++.|.+++|..|.. .|....
T Consensus 22 ~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~ 60 (273)
T 1ouv_A 22 FTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKK 60 (273)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHH
Confidence 3467777888877 8889999999999997 666553
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.15 E-value=9.5e-05 Score=59.71 Aligned_cols=127 Identities=20% Similarity=0.181 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHc--------CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc----CCCcchHHHHHHhhhhhhhh
Q 036322 147 HKSARLLSQAIAM--------QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLE----GDVISVEEQKRILKGLDYQF 214 (360)
Q Consensus 147 ~~Aa~~~s~Al~~--------~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~----~~p~s~~~~~r~~~~ld~~~ 214 (360)
.+|...|.+|+++ .|....++.++|++|...|....-+.- ++.++.- .++. .+....+.
T Consensus 60 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~-~~~~~~~~------- 130 (283)
T 3edt_B 60 KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPL-CKRALEIREKVLGKF-HPDVAKQL------- 130 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH-HHHHHHHHHHHHCTT-CHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHHcCCC-ChHHHHHH-------
Confidence 4677788888877 488889999999999999887654322 2222211 0000 01111111
Q ss_pred cchhHHHHHHHHh--hHHHHHHHHHHHHHHHHHhhh-CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHH
Q 036322 215 MNKDKIASLLVDA--CEECEELLVKAGRKYRLALSI-DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDA 285 (360)
Q Consensus 215 ~~k~~~~~aL~~~--~eEaEeLL~eAgrKY~~Al~~-dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~A 285 (360)
..++..+... -++|.+.+..|.+.+...... +|....++++.|.++...|...+|..+|.++++.+..
T Consensus 131 ---~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 131 ---NNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp ---HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223333222 245555555554444333221 6778899999999999999999999999999987543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.8e-05 Score=58.84 Aligned_cols=97 Identities=14% Similarity=0.040 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCCh
Q 036322 237 KAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNS 316 (360)
Q Consensus 237 eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ss 316 (360)
.|...|..+++.+|++..++++.|.++...+...+|... |+.++.+.+ ..+.++++.|.++.....
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p-~~~~~~~~la~~~~~~g~------ 68 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPH-------LRAALDFDP-TYSVAWKWLGKTLQGQGD------ 68 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCT-TCHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHHCC-CcHHHHHHHHHHHHHcCC------
Confidence 356789999999999999999999999887775555444 555555433 458999999999876542
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCc--hHHHHHHHhhhhh
Q 036322 317 KEKVKLLQQARRLYQDALHMNSDN--LQVREALSSCMSE 353 (360)
Q Consensus 317 kEk~~Ll~qA~~kye~ALrLdpd~--~qa~~Al~~c~~e 353 (360)
+.+|+..|+.|+.++|+. ..+...+......
T Consensus 69 ------~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 69 ------RAGARQAWESGLAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp ------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 456788888888888854 4555555444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=6.6e-05 Score=53.82 Aligned_cols=101 Identities=15% Similarity=0.100 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+..|...|.+++.+.|.++.++.++|.+|...|..
T Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------------------------------------------- 62 (131)
T 2vyi_A 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY--------------------------------------------- 62 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhch---------------------------------------------
Confidence 35677888899999999999999998777643211
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
.+|.+.|..+++++|++..++++.|.++...+... +|++-|+.++.+.+ ..+.++++.|.++
T Consensus 63 ----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~A~~~~~~~~~~~p-~~~~~~~~l~~~~ 124 (131)
T 2vyi_A 63 ----------AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHV-------EAVAYYKKALELDP-DNETYKSNLKIAE 124 (131)
T ss_dssp ----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHhcCc-cchHHHHHHHHHH
Confidence 33445677788889999999999999888877644 44555555555433 4588899888887
Q ss_pred HHhh
Q 036322 306 QQRS 309 (360)
Q Consensus 306 qerA 309 (360)
..+.
T Consensus 125 ~~~~ 128 (131)
T 2vyi_A 125 LKLR 128 (131)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-05 Score=70.71 Aligned_cols=86 Identities=13% Similarity=0.040 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRN 315 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~s 315 (360)
.+|...|..|+.++|++..+++|-|.++...+. |.+|++-|+.++.+.+ ..+.++++.|.++..+-.
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~----- 87 (281)
T 2c2l_A 21 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-------PEQALADCRRALELDG-QSVKAHFFLGQCQLEMES----- 87 (281)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC-----
Confidence 456668999999999999999999999887666 4566666777777533 568999999999886653
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCch
Q 036322 316 SKEKVKLLQQARRLYQDALHMNSDNL 341 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLdpd~~ 341 (360)
+.+|+..|++|+.++|+++
T Consensus 88 -------~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 88 -------YDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp -------HHHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHHHhCccch
Confidence 5678888888888888774
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.10 E-value=3.6e-05 Score=71.52 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=92.1
Q ss_pred HHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHH----------------cCcCChHHHhhhhhhHHHH
Q 036322 114 MFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIA----------------MQHMSLLAVDQLGNTYLVR 177 (360)
Q Consensus 114 ~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~----------------~~P~s~~Avgn~GNalL~~ 177 (360)
.++..+..+..+...|..+.+.++ +.+|+++|.+|++ ++|.+..++.|+|.+|+..
T Consensus 215 ~~~~~~~~a~~~~~~g~~~~~~g~--------~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 215 DVDKILLISEDLKNIGNTFFKSQN--------WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367778888888888888776654 3445666666666 6777788888888776643
Q ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHH
Q 036322 178 EELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALY 257 (360)
Q Consensus 178 GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALY 257 (360)
|+ +.+|.+.|..|++++|++.+|+|
T Consensus 287 g~-------------------------------------------------------~~~A~~~~~~al~~~p~~~~a~~ 311 (370)
T 1ihg_A 287 SD-------------------------------------------------------WQGAVDSCLEALEIDPSNTKALY 311 (370)
T ss_dssp TC-------------------------------------------------------HHHHHHHHHHHHTTCTTCHHHHH
T ss_pred cC-------------------------------------------------------HHHHHHHHHHHHHhCchhHHHHH
Confidence 21 24456678899999999999999
Q ss_pred hHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 258 NWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 258 NWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
+.|.++...+. |.+|++-|++++.+.+ ..+.++.+.+.+++.+..
T Consensus 312 ~lg~~~~~~g~-------~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 312 RRAQGWQGLKE-------YDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHH
Confidence 99999988666 4566677777777644 458888888888766543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.6e-05 Score=59.02 Aligned_cols=82 Identities=21% Similarity=0.125 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA 227 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~ 227 (360)
.+...|.++++++|.++.+++++|.+|...|..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------------------------------------------- 35 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQF----------------------------------------------- 35 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCH-----------------------------------------------
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCH-----------------------------------------------
Confidence 467899999999999999999999888753221
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHH
Q 036322 228 CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFD 284 (360)
Q Consensus 228 ~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~ 284 (360)
.+|.+.|..|++++|+...++++.|.++...|...+|...|..|++...
T Consensus 36 --------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 36 --------DAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp --------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3345578889999999999999999999998888778888777776553
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.09 E-value=6.3e-06 Score=74.77 Aligned_cols=98 Identities=22% Similarity=0.332 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhhhCCCch-----------------hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHH
Q 036322 235 LVKAGRKYRLALSIDGNDV-----------------RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDA 297 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~-----------------~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~A 297 (360)
+.+|.+.|..|+.++|++. .+++|.|.++...+.- .+|++-|+.++.+.+ ..+.+
T Consensus 195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~-------~~A~~~~~~al~~~p-~~~~a 266 (338)
T 2if4_A 195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY-------DEAIGHCNIVLTEEE-KNPKA 266 (338)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCC-------HHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCC-CCHHH
Confidence 4678889999999999887 4999999998886664 455666666666533 45899
Q ss_pred HhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 298 LFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 298 L~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
|++.|.++..+-. +..|+..|++|+.++|+++.+...|..|..
T Consensus 267 ~~~lg~a~~~~g~------------~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 267 LFRRGKAKAELGQ------------MDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHTTTC------------HHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHcCC------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 9999999876542 678999999999999999999999888743
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.07 E-value=5.1e-05 Score=56.55 Aligned_cols=84 Identities=20% Similarity=0.169 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+..|..+|.+|+.++|.++.++.++|.+|...|..
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~--------------------------------------------- 59 (137)
T 3q49_B 25 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP--------------------------------------------- 59 (137)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------------------------------
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH---------------------------------------------
Confidence 45778888888999999999999999777743221
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFD 284 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~ 284 (360)
.+|..-|..|++++|++..++++-|.++...+...+|...|..|++...
T Consensus 60 ----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 60 ----------EQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp ----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 3345578889999999999999999999988887777777777766553
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.7e-05 Score=73.72 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhh----------------hCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHH
Q 036322 235 LVKAGRKYRLALS----------------IDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL 298 (360)
Q Consensus 235 L~eAgrKY~~Al~----------------~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL 298 (360)
+.+|.+.|..|++ ++|.+..+++|-|.++...+. |.+|++-|+.++.+.+ ..+.+|
T Consensus 239 ~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-------~~~A~~~~~~al~~~p-~~~~a~ 310 (370)
T 1ihg_A 239 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD-------WQGAVDSCLEALEIDP-SNTKAL 310 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHTTCT-TCHHHH
T ss_pred HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC-------HHHHHHHHHHHHHhCc-hhHHHH
Confidence 5667778888887 889999999999999887666 5666777777777533 568999
Q ss_pred hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 299 FGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 299 ~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
++.|.++..+-. +++|+..|++|+.++|+++.+...|..|...+
T Consensus 311 ~~lg~~~~~~g~------------~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 311 YRRAQGWQGLKE------------YDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999876542 56789999999999999999999998887654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00028 Score=60.47 Aligned_cols=94 Identities=17% Similarity=0.035 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHhhh------CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 230 ECEELLVKAGRKYRLALSI------DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 230 EaEeLL~eAgrKY~~Al~~------dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
++...+.+|.+.|..++.+ .|....+++|-|.++...+.-.+|...|.+|++-+...-. +.....++++.|.
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~ 235 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--KAAERRAYSNLGN 235 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHH
Confidence 5556688888888888877 5556678889998888888888888888888877653111 1112358888888
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHH
Q 036322 304 ALQQRSRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 304 ALqerA~lr~~sskEk~~Ll~qA~~ky 330 (360)
.+...-. ..++.+.+++|...+
T Consensus 236 ~~~~~g~-----~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 236 AYIFLGE-----FETASEYYKKTLLLA 257 (406)
T ss_dssp HHHHTTC-----HHHHHHHHHHHHHHH
T ss_pred HHHHcCC-----hHHHHHHHHHHHHHH
Confidence 8765432 334444444444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.03 E-value=7.8e-06 Score=61.59 Aligned_cols=81 Identities=16% Similarity=0.062 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHc---CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHH
Q 036322 147 HKSARLLSQAIAM---QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 147 ~~Aa~~~s~Al~~---~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
.+|+..|.+|+++ +|.+..++.++|.+|...|+
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~-------------------------------------------- 42 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE-------------------------------------------- 42 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC--------------------------------------------
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC--------------------------------------------
Confidence 4578899999999 69999999999988875432
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
+.+|.+.|..|++++|+++.++++-|.++...|...+|...|..|++.
T Consensus 43 -----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 43 -----------YRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp -----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 134556788999999999999999999999988866666666666554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00011 Score=60.55 Aligned_cols=178 Identities=16% Similarity=0.131 Sum_probs=102.6
Q ss_pred CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhc---cCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh--hHHHHHH
Q 036322 160 QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLL---EGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA--CEECEEL 234 (360)
Q Consensus 160 ~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla---~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~--~eEaEeL 234 (360)
.|....++.++|++|...|....-+. -++.++. ....+..+....+.. .++..+... -++|.+.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~~~----------~la~~~~~~g~~~~A~~~ 91 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVP-LCKQALEDLEKTSGHDHPDVATMLN----------ILALVYRDQNKYKDAANL 91 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHHCSSSHHHHHHHH----------HHHHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHH----------HHHHHHHHCCCHHHHHHH
Confidence 57778888899999988887654322 1222221 100000011111111 122233222 3556666
Q ss_pred HHHHHHHHHHHhhh-CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 235 LVKAGRKYRLALSI-DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 235 L~eAgrKY~~Al~~-dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
+..|.+.+...... +|....++++.|..+...+.-.+|..+|..|++.++......+...+.++++.|..+...-.
T Consensus 92 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--- 168 (311)
T 3nf1_A 92 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK--- 168 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC---
Confidence 65555555444322 46778899999999999999999999999999998766443334456888888888765432
Q ss_pred CChHHHHHHHHHHHHHHHHhhcc-CCCchHHHHHHHhhhhh
Q 036322 314 RNSKEKVKLLQQARRLYQDALHM-NSDNLQVREALSSCMSE 353 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrL-dpd~~qa~~Al~~c~~e 353 (360)
..++.+.+++|...++....- +|+.+.+...|..|-..
T Consensus 169 --~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 207 (311)
T 3nf1_A 169 --YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK 207 (311)
T ss_dssp --HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 344444555554444432211 55566666666655443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.99 E-value=7.3e-05 Score=65.35 Aligned_cols=164 Identities=16% Similarity=0.122 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHc------CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc----CCCcchHHHHHHhhhhhhhhcc
Q 036322 147 HKSARLLSQAIAM------QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLE----GDVISVEEQKRILKGLDYQFMN 216 (360)
Q Consensus 147 ~~Aa~~~s~Al~~------~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~----~~p~s~~~~~r~~~~ld~~~~~ 216 (360)
.+|...|.+|+++ .|....++.++|.+|...|....-+.. ++.++.- .++ .....+..
T Consensus 103 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~~~~~~~---~~~~~~~~-------- 170 (411)
T 4a1s_A 103 NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAIC-CERHLTLARQLGDR---LSEGRALY-------- 170 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHTCH---HHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHhhch---HHHHHHHH--------
Confidence 4678888888888 788999999999999999887654321 1111111 111 11111111
Q ss_pred hhHHHHHHHHh------------hHHHHHHHHHHHHHHHHHhhhC------CCchhhHHhHHHhhhcccchhcHHHHHHH
Q 036322 217 KDKIASLLVDA------------CEECEELLVKAGRKYRLALSID------GNDVRALYNWGLALFFLETAFDADKIFSA 278 (360)
Q Consensus 217 k~~~~~aL~~~------------~eEaEeLL~eAgrKY~~Al~~d------p~d~~ALYNWGlAL~~~~~a~eAe~L~~a 278 (360)
.++..+... ..++...+.+|.+.|..++++. +....++++-|.++...+.-.+|...|.+
T Consensus 171 --~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 171 --NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp --HHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 122222222 3466677888888888888764 44556889999888888888888888888
Q ss_pred HHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 036322 279 AIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQ 331 (360)
Q Consensus 279 A~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye 331 (360)
|++.+...-. ......++++.|..+...-. ..++.+.+++|...+.
T Consensus 249 al~~~~~~~~--~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 249 RLRIAREFGD--RAAERRANSNLGNSHIFLGQ-----FEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHHHHHHHTC--HHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--cHHHHHHHHHHHHHHHHCcC-----HHHHHHHHHHHHHHHH
Confidence 8887764211 11123578888887765432 3455555555554444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.97 E-value=3.7e-05 Score=73.59 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+.|..|++++|++..+++|.|.++...+. |.+|++-|++++.+.+ ..+.++++.|.++..+-
T Consensus 22 ~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g----- 88 (477)
T 1wao_1 22 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC-------YGYALGDATRAIELDK-KYIKGYYRRAASNMALG----- 88 (477)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC-----
Confidence 4667779999999999999999999999988776 4556666666666533 56899999999987654
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
-+++|+..|++|+.++|+++.+...+..|.
T Consensus 89 -------~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 118 (477)
T 1wao_1 89 -------KFRAALRDYETVVKVKPHDKDAKMKYQECN 118 (477)
T ss_dssp -------CHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 367789999999999999999998888873
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00027 Score=62.62 Aligned_cols=163 Identities=16% Similarity=0.059 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHc--CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHH
Q 036322 147 HKSARLLSQAIAM--QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 147 ~~Aa~~~s~Al~~--~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
.+|++.|.++++. +|+++.++..+|.+|+..|+...-+ +.+ .. |....-+ ..++..+
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al----~~l-~~--~~~~~~~--------------~~l~~~~ 140 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAAL----RTL-HQ--GDSLECM--------------AMTVQIL 140 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHH----HHH-TT--CCSHHHH--------------HHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHH----HHH-hC--CCCHHHH--------------HHHHHHH
Confidence 4577888888876 5999999999999999988776433 221 11 2221110 0111122
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHH--hHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHH
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGNDVRALY--NWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWA 302 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALY--NWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWG 302 (360)
...+ -+.+|.+.|+.+++.+|++....+ .|...+...+.- .+|++-|+.++...+ ..|.++++-|
T Consensus 141 ~~~g-----~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~-------~eA~~~~~~~l~~~p-~~~~~~~~la 207 (291)
T 3mkr_A 141 LKLD-----RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKL-------QDAYYIFQEMADKCS-PTLLLLNGQA 207 (291)
T ss_dssp HHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHH-------HHHHHHHHHHHHHSC-CCHHHHHHHH
T ss_pred HHCC-----CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHH-------HHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 2111 135566678888888998753322 233333223444 445555555555433 4589999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 303 VALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 303 lALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
.++..+- -+..|...|++||.++|++++++..+..|...+.
T Consensus 208 ~~~~~~g------------~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 208 ACHMAQG------------RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 9976654 4678899999999999999999988877765543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00021 Score=50.80 Aligned_cols=63 Identities=24% Similarity=0.211 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 237 KAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 237 eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
+|..-|..+++++|++..++++.|.++...+...+|.. -|+.++...+ ..+.++.+.|.++..
T Consensus 61 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-------~~~~~~~~~~-~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE-------YYQKALELDP-NNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH-------HHHHHHHhCC-CcHHHHHHHHHHHHh
Confidence 34445666777788888888888888777666444444 4444444333 447888887777654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00021 Score=58.54 Aligned_cols=164 Identities=17% Similarity=0.082 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHc------CcCChHHHhhhhhhHHHHHHHHHHHHH--HHHHHhccCCCcchHHHHHHhhhhhhhhcchhH
Q 036322 148 KSARLLSQAIAM------QHMSLLAVDQLGNTYLVREELKLHFSC--KLRRLLLEGDVISVEEQKRILKGLDYQFMNKDK 219 (360)
Q Consensus 148 ~Aa~~~s~Al~~------~P~s~~Avgn~GNalL~~GeLKl~~s~--~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~ 219 (360)
+|.+.|.+|+++ .|....++.++|.+|...|....-+.. ....+....+.+ .....+.. .
T Consensus 61 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~----------~ 128 (338)
T 3ro2_A 61 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--VGEARALY----------N 128 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHH----------H
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc--hHHHHHHH----------H
Confidence 455556666555 667788999999999999887654322 111112221111 11111111 1
Q ss_pred HHHHHHH---------------hhHHHHHHHHHHHHHHHHHhhh------CCCchhhHHhHHHhhhcccchhcHHHHHHH
Q 036322 220 IASLLVD---------------ACEECEELLVKAGRKYRLALSI------DGNDVRALYNWGLALFFLETAFDADKIFSA 278 (360)
Q Consensus 220 ~~~aL~~---------------~~eEaEeLL~eAgrKY~~Al~~------dp~d~~ALYNWGlAL~~~~~a~eAe~L~~a 278 (360)
++..... ..+++...+.+|-+.|..++.+ .|....++++.|..+...+.-.+|...|.+
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 208 (338)
T 3ro2_A 129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 208 (338)
T ss_dssp HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1222221 1345556677777777777766 445566888888888888888888888888
Q ss_pred HHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q 036322 279 AIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 279 A~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~ky 330 (360)
|++.+...-. +.....++++.|..+...-. ..++.+.+++|...+
T Consensus 209 a~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 209 RLLIAKEFGD--KAAERRAYSNLGNAYIFLGE-----FETASEYYKKTLLLA 253 (338)
T ss_dssp HHHHHHHHTC--HHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--hHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHH
Confidence 8877754211 11123578888888765542 344444554444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.90 E-value=9.4e-05 Score=52.00 Aligned_cols=86 Identities=17% Similarity=0.114 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCC--hhHHHhhHHHHHHHh-hhcC
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIY--APDALFGWAVALQQR-SRLR 312 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~--ap~AL~NWGlALqer-A~lr 312 (360)
.+|...|..+++++|++..++++.|.++...+. |.+|++-|+.++.+.+ . .+.++++.|..+..+ .
T Consensus 23 ~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~-------~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~~~~~~--- 91 (112)
T 2kck_A 23 TESIDLFEKAIQLDPEESKYWLMKGKALYNLER-------YEEAVDCYNYVINVIE-DEYNKDVWAAKADALRYIEG--- 91 (112)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHHTTCSS---
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHHHHhC---
Confidence 456678899999999999999999999888666 4556666666666533 3 589999999887544 3
Q ss_pred CCChHHHHHHHHHHHHHHHHhhccCCCch
Q 036322 313 PRNSKEKVKLLQQARRLYQDALHMNSDNL 341 (360)
Q Consensus 313 ~~sskEk~~Ll~qA~~kye~ALrLdpd~~ 341 (360)
-+++|+..|+.++...|+++
T Consensus 92 ---------~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 92 ---------KEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp ---------CSHHHHHHHHHHGGGCCCCC
T ss_pred ---------CHHHHHHHHHHHhhcccCCC
Confidence 24578899999999999875
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.89 E-value=7.3e-05 Score=61.29 Aligned_cols=164 Identities=15% Similarity=0.080 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHcCcCCh----HHHhhhhhhHHHHHHHHHHHHHHHHHHh---ccCCCcchHHHHHHhhhhhhhhcchh
Q 036322 146 LHKSARLLSQAIAMQHMSL----LAVDQLGNTYLVREELKLHFSCKLRRLL---LEGDVISVEEQKRILKGLDYQFMNKD 218 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~----~Avgn~GNalL~~GeLKl~~s~~Lr~ll---a~~~p~s~~~~~r~~~~ld~~~~~k~ 218 (360)
+.+|..+|.+|+++.|.++ .++.++|.+|...|....-+.- ++.++ ...+. ......+..
T Consensus 21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~~~~~~--~~~~~~~~~---------- 87 (338)
T 3ro2_A 21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEY-HHHDLTLARTIGD--QLGEAKASG---------- 87 (338)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHTC--HHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHhhcccc--cHHHHHHHH----------
Confidence 4568888999999999995 6788999999988876643221 11111 11100 011111111
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCc------hhhHHhHHHhhhcccc-------------hhcHHHHHHHH
Q 036322 219 KIASLLVDACEECEELLVKAGRKYRLALSIDGND------VRALYNWGLALFFLET-------------AFDADKIFSAA 279 (360)
Q Consensus 219 ~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d------~~ALYNWGlAL~~~~~-------------a~eAe~L~~aA 279 (360)
.++...... .-+.+|...|..|+++.|.. ..++++-|..+...+. ..+|...|.+|
T Consensus 88 ~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 88 NLGNTLKVL-----GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHc-----cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 112222211 12344555566666554433 3488888888877555 56677778888
Q ss_pred HHHHHHHHhcc-----CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHH
Q 036322 280 IDNFDAMMLKG-----NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQD 332 (360)
Q Consensus 280 ~dKY~AAl~~~-----n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ 332 (360)
.+-|+.++... +...+.++++.|..+..... ..++.+.+++|...+..
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN-----FRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHh
Confidence 88887766531 11224678888887766543 34555555555544433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.84 E-value=8.7e-05 Score=61.88 Aligned_cols=104 Identities=7% Similarity=-0.056 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhhhCCCch---hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc--CCChhHHHhhHHHHHHHhh
Q 036322 235 LVKAGRKYRLALSIDGNDV---RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG--NIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~---~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~--n~~ap~AL~NWGlALqerA 309 (360)
+.+|...|..+++..|++. +|+|+-|.++...+. |.+|++-|+.++..- +...|.|+++.|.++..+.
T Consensus 20 ~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~-------~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 20 WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD-------LPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD 92 (225)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhh
Confidence 4667778999999988764 799999988887777 455555555555542 2345679999999987643
Q ss_pred h--------cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 036322 310 R--------LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREAL 347 (360)
Q Consensus 310 ~--------lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al 347 (360)
. +.. ......-+.+|+..|+++|..+|+++.+..|+
T Consensus 93 ~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~ 136 (225)
T 2yhc_A 93 DSALQGFFGVDR--SDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT 136 (225)
T ss_dssp C----------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred hhhhhhhhccch--hhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 1 100 01112357899999999999999999877664
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00042 Score=57.94 Aligned_cols=163 Identities=15% Similarity=0.022 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHH---HHHhccCCCcchHHHHHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKL---RRLLLEGDVISVEEQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~L---r~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~ 222 (360)
+.+|.+.|.+|++. .++.|.++||..|.. |-+...+..++ +.++....|.....-+.+...
T Consensus 34 ~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~------------- 97 (212)
T 3rjv_A 34 YQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN------------- 97 (212)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc-------------
Confidence 34677888888765 689999999999987 52222222222 233322222222122222110
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCC--CchhhHHhHHHhhhc----ccchhcHHHHHHHHHHHHHHHHhccCCChhH
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDG--NDVRALYNWGLALFF----LETAFDADKIFSAAIDNFDAMMLKGNIYAPD 296 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp--~d~~ALYNWGlAL~~----~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~ 296 (360)
+.-...-+.+|.+-|..|++..| +...|+||-|..+.. +++...|...|..|+ .+++ .|.
T Consensus 98 -----g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-------~~~~--~~~ 163 (212)
T 3rjv_A 98 -----RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS-------SLSR--TGY 163 (212)
T ss_dssp -----GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH-------HTSC--TTH
T ss_pred -----CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-------HcCC--CHH
Confidence 00012235778888999999988 459999999999988 556555555555554 4422 378
Q ss_pred HHhhHHHHHHHhhh--cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 297 ALFGWAVALQQRSR--LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 297 AL~NWGlALqerA~--lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
|+++-|..+..--. +... ...|+..|+.|+.+ +++.+...|.
T Consensus 164 a~~~Lg~~y~~g~gg~~~~d--------~~~A~~~~~~A~~~--g~~~A~~~l~ 207 (212)
T 3rjv_A 164 AEYWAGMMFQQGEKGFIEPN--------KQKALHWLNVSCLE--GFDTGCEEFD 207 (212)
T ss_dssp HHHHHHHHHHHCBTTTBCCC--------HHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCC--------HHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 99999999865432 2222 34566666766665 4556555544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00043 Score=49.24 Aligned_cols=100 Identities=20% Similarity=0.223 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+.|..+++.+|++..++++.|..+...+...+|.++|..++ ...+ ..+.++++.|..+...-
T Consensus 17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-------~~~~-~~~~~~~~l~~~~~~~~----- 83 (136)
T 2fo7_A 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL-------ELDP-RSAEAWYNLGNAYYKQG----- 83 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------HHCT-TCHHHHHHHHHHHHTTT-----
T ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHH-------HHCC-CchHHHHHHHHHHHHhc-----
Confidence 3566667888888999999999999988887776655666655554 4333 34788888888765432
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
-+.+|+..|+.++.++|+++.+...+..|-...
T Consensus 84 -------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 116 (136)
T 2fo7_A 84 -------DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 116 (136)
T ss_dssp -------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred -------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 256788888899999999998887777665443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0014 Score=61.37 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHH-cCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhH
Q 036322 141 RAEMILHKSARLLSQAIA-MQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDK 219 (360)
Q Consensus 141 ~Ad~lL~~Aa~~~s~Al~-~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~ 219 (360)
.|..+...|.+.|..|++ +.|.+..+..++|+.+...|+...- ..-++.++.- .|.... .+.. .
T Consensus 297 ~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A-~~~~~~al~~-~p~~~~---~~~~----------~ 361 (530)
T 2ooe_A 297 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV-HSIYNRLLAI-EDIDPT---LVYI----------Q 361 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHS-SSSCHH---HHHH----------H
T ss_pred hhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH-HHHHHHHhCc-cccCch---HHHH----------H
Confidence 334444588999999997 7999999999999999988866532 1123444433 232110 0110 0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhh-cccchhcHHHHHHHHHHHHHHHHhccCCChhHHH
Q 036322 220 IASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALF-FLETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL 298 (360)
Q Consensus 220 ~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~-~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL 298 (360)
++..+.. ..-+.+|-+-|..|++..|..+..++.++.... ..|...+|.++|+.|++++ + ..|+++
T Consensus 362 ~~~~~~~-----~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-------p-~~~~~~ 428 (530)
T 2ooe_A 362 YMKFARR-----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-------G-DIPEYV 428 (530)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-------T-TCHHHH
T ss_pred HHHHHHH-----hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-------C-CCHHHH
Confidence 1111111 122456777888888888888777776654421 2566667777777777654 2 348899
Q ss_pred hhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchH
Q 036322 299 FGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQ 342 (360)
Q Consensus 299 ~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~q 342 (360)
.++|..+... + -...|...|+.|+...|.+|.
T Consensus 429 ~~~~~~~~~~-----g-------~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 429 LAYIDYLSHL-----N-------EDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HHHHHHHTTT-----T-------CHHHHHHHHHHHHHSCCSCGG
T ss_pred HHHHHHHHhC-----C-------CHhhHHHHHHHHHhccCCCHH
Confidence 8888875432 2 134567777777777776664
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00012 Score=53.99 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHcCcCCh---HHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSL---LAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~---~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~ 222 (360)
+.+|...|.+++...|.++ .+++++|.+|...|.
T Consensus 18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~------------------------------------------- 54 (129)
T 2xev_A 18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRN------------------------------------------- 54 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhcc-------------------------------------------
Confidence 4567788899999999998 799999988774322
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCCCc---hhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDGND---VRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d---~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
+.+|..-|..++..+|++ ..++|+-|.++...|...+|...|..+++.|
T Consensus 55 ------------~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 55 ------------FQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp ------------HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ------------HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 134555788889999999 8899999999988888666666666666554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00029 Score=50.66 Aligned_cols=101 Identities=15% Similarity=0.194 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+..|...|.+++.+.|.++.++.++|.+|...|..
T Consensus 20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~--------------------------------------------- 54 (131)
T 1elr_A 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY--------------------------------------------- 54 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH---------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccH---------------------------------------------
Confidence 45677888999999999999999999888754322
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCc-------hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGND-------VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL 298 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d-------~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL 298 (360)
.+|..-|..++.++|++ ..++++.|.++...+...+| .+-|+.++...+ .|++.
T Consensus 55 ----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-------~~~~~~~~~~~~--~~~~~ 115 (131)
T 1elr_A 55 ----------NKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDA-------IHFYNKSLAEHR--TPDVL 115 (131)
T ss_dssp ----------HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHHHCC--CHHHH
T ss_pred ----------HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHH-------HHHHHHHHHhCC--CHHHH
Confidence 22333556666666665 88999999998887775444 444555555444 37888
Q ss_pred hhHHHHHHHhhh
Q 036322 299 FGWAVALQQRSR 310 (360)
Q Consensus 299 ~NWGlALqerA~ 310 (360)
...+..+..+..
T Consensus 116 ~~l~~~~~~~~~ 127 (131)
T 1elr_A 116 KKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877666554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00032 Score=69.54 Aligned_cols=177 Identities=11% Similarity=-0.028 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHH------HHHHHHHH---HHHhccCCCcchH---HHHHHhhhhhhhhc
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREEL------KLHFSCKL---RRLLLEGDVISVE---EQKRILKGLDYQFM 215 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeL------Kl~~s~~L---r~lla~~~p~s~~---~~~r~~~~ld~~~~ 215 (360)
+|.+++.++++++|+...|.+.=|.++...|.- +..+..+| ..++... |-+.. .++-++..+..
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~--- 122 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE--- 122 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS---
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc---
Confidence 468899999999999999999999999887751 11122333 3333332 32211 13333433210
Q ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChh
Q 036322 216 NKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAP 295 (360)
Q Consensus 216 ~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap 295 (360)
..+.+|-.-|..++++||.++.|.++=|.++..-+. .++++++-|+.++.+ ++...
T Consensus 123 -----------------~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~------~~~~el~~~~~~I~~-~p~n~ 178 (567)
T 1dce_A 123 -----------------PNWARELELCARFLEADERNFHCWDYRRFVAAQAAV------APAEELAFTDSLITR-NFSNY 178 (567)
T ss_dssp -----------------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC------CHHHHHHHHHTTTTT-TCCCH
T ss_pred -----------------ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC------ChHHHHHHHHHHHHH-CCCCc
Confidence 124566778999999999999999999999987542 357788888888885 55668
Q ss_pred HHHhhHHHHHHHhhhcCCCCh--HHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 296 DALFGWAVALQQRSRLRPRNS--KEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 296 ~AL~NWGlALqerA~lr~~ss--kEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
.|+++=|.+|..+-.-...+. .-....++.|+..|..||.++|++..+-.=+.-...
T Consensus 179 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237 (567)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence 999999999988633211100 012357999999999999999999988776554443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00011 Score=57.94 Aligned_cols=102 Identities=11% Similarity=0.055 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHH-HHHhhhcCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVA-LQQRSRLRP 313 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlA-LqerA~lr~ 313 (360)
+.+|...|..++..+|++..++++.|.++...+.-.+| ++-|+.++.+.+ ..+.++++.|.+ +...-..
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A-------~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~-- 95 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS-------LLAYRQALQLRG-ENAELYAALATVLYYQASQH-- 95 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-------HHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCc--
Confidence 45566688999999999999999999999887775444 444555555433 358999999988 3333211
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
....|+..|+.++.++|+++.+...|..|--.+
T Consensus 96 --------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 128 (177)
T 2e2e_A 96 --------MTAQTRAMIDKALALDSNEITALMLLASDAFMQ 128 (177)
T ss_dssp --------CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred --------chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 025788889999999999999988887775544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00042 Score=48.61 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=68.5
Q ss_pred hCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHH
Q 036322 248 IDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQAR 327 (360)
Q Consensus 248 ~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~ 327 (360)
++|++..++++-|..+...+.- .+|+.-|+.++.+.+ ..+.++++.|..+...- -+.+|+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~-------~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~------------~~~~A~ 60 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNY-------TESIDLFEKAIQLDP-EESKYWLMKGKALYNLE------------RYEEAV 60 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCH-------HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTT------------CHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcc------------CHHHHH
Confidence 4799999999999999887764 455555555555433 35899999999876653 367889
Q ss_pred HHHHHhhccCCC--chHHHHHHHhhhhhc
Q 036322 328 RLYQDALHMNSD--NLQVREALSSCMSEL 354 (360)
Q Consensus 328 ~kye~ALrLdpd--~~qa~~Al~~c~~el 354 (360)
..|++++.++|+ ++.+..-+..|-..+
T Consensus 61 ~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 61 DCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 999999999999 999998888887665
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.73 E-value=6.2e-05 Score=54.08 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhhhCCCchh-hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 235 LVKAGRKYRLALSIDGNDVR-ALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~-ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
+.+|.+.|..+++.+|++.. ++++.|.++...+. |.+|++-|+.++.+.+ ..+.++++
T Consensus 16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~~~~------------- 74 (99)
T 2kc7_A 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD-------WQKALNNYQSAIELNP-DSPALQAR------------- 74 (99)
T ss_dssp HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHCT-TSTHHHHH-------------
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhcCC-CcHHHHHH-------------
Confidence 56788899999999999999 99999999987666 4555555666666533 44677654
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCCch
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSDNL 341 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd~~ 341 (360)
..+.++..+|++++.++|+++
T Consensus 75 -------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 -------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp -------HHHHHHHHHHCCTTHHHHCCS
T ss_pred -------HHHHHHHHHHHHHhccCcccc
Confidence 478889999999999999875
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0021 Score=60.39 Aligned_cols=156 Identities=10% Similarity=0.032 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCcCChHHHhhhhhhHHHHHHH---HHHHHHHHHHHhccCCCcchH---HHHHHhhhhhhhhcchhHHHH
Q 036322 149 SARLLSQAIAMQHMSLLAVDQLGNTYLVREEL---KLHFSCKLRRLLLEGDVISVE---EQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 149 Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeL---Kl~~s~~Lr~lla~~~p~s~~---~~~r~~~~ld~~~~~k~~~~~ 222 (360)
+..++..|...+|. |.++||+.|...|.- +.-+ .-++.++... |+... .-+.+...-.
T Consensus 164 a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~-~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~----------- 227 (452)
T 3e4b_A 164 VERICKAALNTTDI---CYVELATVYQKKQQPEQQAELL-KQMEAGVSRG-TVTAQRVDSVARVLGDAT----------- 227 (452)
T ss_dssp HHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHTT-CSCHHHHHHHHHHHTCGG-----------
T ss_pred HHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHH-HHHHHHHHCC-CHHHHHHHHHHHHHhCCC-----------
Confidence 34455556555555 889999998887733 2211 1233333333 33221 1222221110
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHh-h--hcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHh
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLA-L--FFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALF 299 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlA-L--~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~ 299 (360)
-.+.-+.+|.+-|+.|+ |++..|+||-|.. + ...++..+|..+|..|+ ..+ .|.|++
T Consensus 228 -------~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-------~~g---~~~A~~ 287 (452)
T 3e4b_A 228 -------LGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-------AAD---QPRAEL 287 (452)
T ss_dssp -------GSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-------HTT---CHHHHH
T ss_pred -------CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------HCC---CHHHHH
Confidence 00112356667777776 8888888888887 3 22555555555555544 333 267888
Q ss_pred hHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 300 GWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 300 NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
+.|..+..-- -.+. -...|+..|++|+ |+++.+..-|..|-
T Consensus 288 ~Lg~~y~~G~-g~~~-------d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 288 LLGKLYYEGK-WVPA-------DAKAAEAHFEKAV---GREVAADYYLGQIY 328 (452)
T ss_dssp HHHHHHHHCS-SSCC-------CHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCCC-------CHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 8887776321 1111 1345666666666 66666666665543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00054 Score=59.64 Aligned_cols=170 Identities=11% Similarity=0.080 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHcCcCC------hHHHhhhhhhHHHH-HHHHHHHHHHHHHHh---ccCCCcchHHHHHHhhhhhhhhc
Q 036322 146 LHKSARLLSQAIAMQHMS------LLAVDQLGNTYLVR-EELKLHFSCKLRRLL---LEGDVISVEEQKRILKGLDYQFM 215 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s------~~Avgn~GNalL~~-GeLKl~~s~~Lr~ll---a~~~p~s~~~~~r~~~~ld~~~~ 215 (360)
+.+|+.+|.+|+++.|.. ..++.++|++|... |+...-+.. ++.++ +..+.. .....+
T Consensus 93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~-~~~Al~~~~~~~~~--~~~~~~--------- 160 (292)
T 1qqe_A 93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC-YELAGEWYAQDQSV--ALSNKC--------- 160 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHTTCH--HHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHhCCCh--HHHHHH---------
Confidence 346888999999998764 56899999999885 776643221 22222 111110 000011
Q ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchh-------hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHh
Q 036322 216 NKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVR-------ALYNWGLALFFLETAFDADKIFSAAIDNFDAMML 288 (360)
Q Consensus 216 ~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~-------ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~ 288 (360)
-.+++.++.... -+.+|...|..+++++|+... +++|.|+++...|...+| +.-|+.++.
T Consensus 161 -~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A-------~~~~~~al~ 227 (292)
T 1qqe_A 161 -FIKCADLKALDG-----QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA-------ARTLQEGQS 227 (292)
T ss_dssp -HHHHHHHHHHTT-----CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH-------HHHHHGGGC
T ss_pred -HHHHHHHHHHhC-----CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH-------HHHHHHHHh
Confidence 112333333332 256777899999999987654 678889888777775444 444555555
Q ss_pred ccCCChhH-----HHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 289 KGNIYAPD-----ALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 289 ~~n~~ap~-----AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
+.+.. +. .+.+.+.++... . ..-+..|+..|+.++.++|++..++-=+...+
T Consensus 228 l~p~~-~~~~~~~~l~~l~~~~~~~-----~-----~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 228 EDPNF-ADSRESNFLKSLIDAVNEG-----D-----SEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp C----------HHHHHHHHHHHHTT-----C-----TTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred hCCCC-CCcHHHHHHHHHHHHHHcC-----C-----HHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 42211 22 233333333211 1 12378899999999999999987776655554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00072 Score=57.94 Aligned_cols=188 Identities=13% Similarity=0.103 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHc------CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHh---ccCCCcchHHHHHHhhhh
Q 036322 140 ERAEMILHKSARLLSQAIAM------QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLL---LEGDVISVEEQKRILKGL 210 (360)
Q Consensus 140 ~~Ad~lL~~Aa~~~s~Al~~------~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~ll---a~~~p~s~~~~~r~~~~l 210 (360)
+.|...+.+|.+.|.+|+.+ .|....++.++|.+|...|....-+.. ++.++ +..+.+ .....+.
T Consensus 157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~--~~~~~~~--- 230 (406)
T 3sf4_A 157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA-HEQRLLIAKEFGDK--AAERRAY--- 230 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH-HHHHHHHHHHTTCH--HHHHHHH---
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHhcCCc--HHHHHHH---
Confidence 34555588888889998887 566678999999999998877643221 11111 221110 0001111
Q ss_pred hhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCc------hhhHHhHHHhhhcccchhcHHHHHHHHHHHHH
Q 036322 211 DYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGND------VRALYNWGLALFFLETAFDADKIFSAAIDNFD 284 (360)
Q Consensus 211 d~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d------~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~ 284 (360)
..++.++...+ -+.+|.+.|..++++.|.. ..++++-|.++...|.-.+|...|..|++.+.
T Consensus 231 -------~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 231 -------SNLGNAYIFLG-----EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp -------HHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHcC-----ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 12222222221 2345555666666665544 77889999988888888888888888887765
Q ss_pred HHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 285 AMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 285 AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
..-. +...+.++++.|..+..+-. ..++.+.+++|...++.. ...|....+...|..|...
T Consensus 299 ~~~~--~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~ 359 (406)
T 3sf4_A 299 ELND--RIGEGRACWSLGNAYTALGN-----HDQAMHFAEKHLEISREV-GDKSGELTARLNLSDLQMV 359 (406)
T ss_dssp HTTC--HHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred hcCC--cHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHh-cCCcchhHHHHHHHHHHHH
Confidence 3211 11235788888888766542 345555555555555432 1234445555555555433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0039 Score=59.76 Aligned_cols=173 Identities=10% Similarity=-0.014 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHH-HHHHHHHHHHHHhccCCCcc---hHHHHHHhhhhhhhhcchhHHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREE-LKLHFSCKLRRLLLEGDVIS---VEEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~Ge-LKl~~s~~Lr~lla~~~p~s---~~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
+|.+++.++|.++|+...|...=|.++...|. ++. ...-+..+|... |-. =+.|+.++..+-. .
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~e-EL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~---~------- 139 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLED-ELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP---Q------- 139 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH-HHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC---S-------
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC---C-------
Confidence 57889999999999999999999999987764 332 222223444332 332 2234555554410 0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccc-hhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHH
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLET-AFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWA 302 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~-a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWG 302 (360)
.+.++-.-+..++++||..+.|.++=|.+|..-+. ......+|.++++-++.++.+ ++....|.++=|
T Consensus 140 ----------~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-dp~N~SAW~~R~ 208 (349)
T 3q7a_A 140 ----------DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-DGRNNSAWGWRW 208 (349)
T ss_dssp ----------CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred ----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 01355567889999999999999999988877221 112367889999999999996 555689999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 303 VALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 303 lALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
..|..+-+... ...+++.++.++.++|.++|+|..+-.=+.
T Consensus 209 ~lL~~l~~~~~-----~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr 249 (349)
T 3q7a_A 209 YLRVSRPGAET-----SSRSLQDELIYILKSIHLIPHNVSAWNYLR 249 (349)
T ss_dssp HHHTTSTTCCC-----CHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhcccccc-----chHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99887654321 245899999999999999999998865433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00031 Score=48.69 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=62.7
Q ss_pred CchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q 036322 251 NDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 251 ~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~ky 330 (360)
++..++++.|.++...+.-.+|...|. .++...+ ..+.++++.|.++...- -+.+|+..|
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~-------~a~~~~~-~~~~~~~~l~~~~~~~~------------~~~~A~~~~ 66 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQ-------KALELDP-NNAEAWYNLGNAYYKQG------------DYDEAIEYY 66 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHH-------HHHHHCT-TCHHHHHHHHHHHHHTT------------CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHH-------HHHhcCC-CCHHHHHHHHHHHHHHh------------hHHHHHHHH
Confidence 567899999998887776555555544 4444433 45899999999976543 367889999
Q ss_pred HHhhccCCCchHHHHHHHhhhhh
Q 036322 331 QDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 331 e~ALrLdpd~~qa~~Al~~c~~e 353 (360)
++|+.++|+++.+...|..|...
T Consensus 67 ~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 67 QKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHh
Confidence 99999999999999888877543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00024 Score=52.75 Aligned_cols=96 Identities=19% Similarity=0.087 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHcCcCC---hHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMS---LLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s---~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~ 222 (360)
+..|.++|.+++++.|.+ ..++.++|.+|...|.
T Consensus 44 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~------------------------------------------- 80 (148)
T 2dba_A 44 YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED------------------------------------------- 80 (148)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc-------------------------------------------
Confidence 456888999999999988 8888888877764321
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHH
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWA 302 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWG 302 (360)
+.+|.+.|..+++++|++..++++.|.++...+...+| ++-|+.++.+.+ ..+++....+
T Consensus 81 ------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A-------~~~~~~al~~~p-~~~~~~~~l~ 140 (148)
T 2dba_A 81 ------------YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQA-------VLDLQRCVSLEP-KNKVFQEALR 140 (148)
T ss_dssp ------------HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHH-------HHHHHHHHHHCS-SCHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHH-------HHHHHHHHHcCC-CcHHHHHHHH
Confidence 13445567778888999999999999988876664444 444444444433 3466665544
Q ss_pred HH
Q 036322 303 VA 304 (360)
Q Consensus 303 lA 304 (360)
..
T Consensus 141 ~~ 142 (148)
T 2dba_A 141 NI 142 (148)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00059 Score=48.77 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=64.6
Q ss_pred chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 036322 252 DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQ 331 (360)
Q Consensus 252 d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye 331 (360)
+..++++-|.++...+. |.+|++-|+.++.+.+ ..|.++++.|.++..+-. +.+|+..|+
T Consensus 3 ~~~~~~~~g~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~------------~~~A~~~~~ 62 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGL-------YREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGE------------YTQAIQMCQ 62 (111)
T ss_dssp HHHHHHHHHHHHHTTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC------------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcC------------HHHHHHHHH
Confidence 45788888888877666 4566666666666544 458999999999876542 678999999
Q ss_pred HhhccCCCc------hHHHHHHHhhhhhcc
Q 036322 332 DALHMNSDN------LQVREALSSCMSELN 355 (360)
Q Consensus 332 ~ALrLdpd~------~qa~~Al~~c~~el~ 355 (360)
.||.++|++ +.+.-.+..|...+.
T Consensus 63 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 63 QGLRYTSTAEHVAIRSKLQYRLELAQGAVG 92 (111)
T ss_dssp HHHTSCSSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 777777777766554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0012 Score=58.34 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHc------CcCChHHHhhhhhhHHHHHHHHHHHHH---HHHHHhccCCCcchHHHHHHhhhhhhhhcc
Q 036322 146 LHKSARLLSQAIAM------QHMSLLAVDQLGNTYLVREELKLHFSC---KLRRLLLEGDVISVEEQKRILKGLDYQFMN 216 (360)
Q Consensus 146 L~~Aa~~~s~Al~~------~P~s~~Avgn~GNalL~~GeLKl~~s~---~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~ 216 (360)
+.+|...|.+|+.+ .|....+++++|++|...|....-+.- +|. +.... +........+.
T Consensus 119 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~~~~-~~~~~~~~~~~--------- 187 (383)
T 3ulq_A 119 YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE-IYKEH-EAYNIRLLQCH--------- 187 (383)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHTC-STTHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhC-ccchHHHHHHH---------
Confidence 34677888888887 444668999999999998877654332 121 11111 10001111111
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCc------hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc
Q 036322 217 KDKIASLLVDACEECEELLVKAGRKYRLALSIDGND------VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG 290 (360)
Q Consensus 217 k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d------~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~ 290 (360)
..++.+.... .-+.+|-+.|..|+++.|.. ..+++|-|.+....|.-.+|...|.+|++-++..-..
T Consensus 188 -~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~- 260 (383)
T 3ulq_A 188 -SLFATNFLDL-----KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL- 260 (383)
T ss_dssp -HHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG-
T ss_pred -HHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc-
Confidence 1122222222 12445555666666664433 3599999999988888888888888888776532211
Q ss_pred CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q 036322 291 NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 291 n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~ky 330 (360)
+..+.++++.|..+..+-. ..++.+.+++|....
T Consensus 261 -~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 261 -PSLPQAYFLITQIHYKLGK-----IDKAHEYHSKGMAYS 294 (383)
T ss_dssp -GGHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHH
Confidence 3458999999999876542 345555555554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00025 Score=50.73 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|++.|.+|++++|.++.+++++|.+|...|+.
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--------------------------------------------- 54 (111)
T 2l6j_A 20 YREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEY--------------------------------------------- 54 (111)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH---------------------------------------------
Confidence 45788999999999999999999999888754322
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCc------hhhHHhHHHhhhc
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGND------VRALYNWGLALFF 265 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d------~~ALYNWGlAL~~ 265 (360)
.+|.+-|..|++++|++ ..++++.|.++..
T Consensus 55 ----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 90 (111)
T 2l6j_A 55 ----------TQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGA 90 (111)
T ss_dssp ----------HHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence 34555788889999998 8888888887655
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0035 Score=58.08 Aligned_cols=98 Identities=18% Similarity=0.052 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc----ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHh
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFF----LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQR 308 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~----~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqer 308 (360)
.-+.+|.+-|+.|++. ++..|+||-|..+.. +++..+|-..|..|+ ..++ |+|+++-|..+..-
T Consensus 345 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~-------~~~~---~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA-------EQGL---SAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-------HTTC---HHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-------hCCC---HHHHHHHHHHHHcC
Confidence 3567788888888876 689999999999887 566555555555544 4433 89999999998753
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhhccCCC---chHHHHHHHhh
Q 036322 309 SRLRPRNSKEKVKLLQQARRLYQDALHMNSD---NLQVREALSSC 350 (360)
Q Consensus 309 A~lr~~sskEk~~Ll~qA~~kye~ALrLdpd---~~qa~~Al~~c 350 (360)
-... . -..+|+..|+.|+.++|+ ++.+...|..+
T Consensus 413 ~g~~-~-------d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 413 LGVE-R-------DYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp SSSC-C-------CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred CCCC-C-------CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 2222 2 245788899999999955 88887776554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00056 Score=59.40 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhccc---chhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLE---TAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~---~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
+.+..+-+.|..++..+|.+.++.+|.|.+|.-.+ .-.++-.++++.+++- .+....++||+-|++. .
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~------~p~~~rd~lY~LAv~~---~ 82 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG------SKEEQRDYVFYLAVGN---Y 82 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS------CHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC------CccchHHHHHHHHHHH---H
Confidence 45566667999999999999999999999998844 3335555555555431 1224579999999997 3
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 310 RLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 310 ~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
+++ =...|.++++.+|+++|++.||+.....+..
T Consensus 83 kl~---------~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 83 RLK---------EYEKALKYVRGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HTS---------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred Hcc---------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 333 3467899999999999999999998776654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0034 Score=58.91 Aligned_cols=98 Identities=9% Similarity=-0.062 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc-ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHH-Hhhhc
Q 036322 234 LLVKAGRKYRLALSIDGNDVRALYNWGLALFF-LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ-QRSRL 311 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~-~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq-erA~l 311 (360)
-+.+|.+-|+.|++..|.+..++||-|..+.. .+.. .=+.+|++-|+.+. . ..|.|+++.|..+- ...
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~----~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~-- 263 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGT----PDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPE-- 263 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSS----CCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGG--
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC----CCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCC--
Confidence 44555555666666555555555666655543 1111 12456666666554 2 22566666666522 111
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
.. -..+|+..|++|+. ++++.+...|-.|-
T Consensus 264 -~~-------d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y 293 (452)
T 3e4b_A 264 -LG-------DVEQMMKYLDNGRA--ADQPRAELLLGKLY 293 (452)
T ss_dssp -GC-------CHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred -CC-------CHHHHHHHHHHHHH--CCCHHHHHHHHHHH
Confidence 11 23456666666663 34566665555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00057 Score=54.57 Aligned_cols=114 Identities=12% Similarity=-0.001 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.+.|.+++ +| ++.++.++|++|...|....-+.. ++.++.-. |..... . -.++.++..
T Consensus 23 ~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~-~~~~~~----~----------~~lg~~~~~ 83 (213)
T 1hh8_A 23 KGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKA-FTRSINRD-KHLAVA----Y----------FQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHC-TTCHHH----H----------HHHHHHHHH
T ss_pred HHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhC-ccchHH----H----------HHHHHHHHH
Confidence 45666666664 44 778999999999888876644322 23333222 221100 0 011222221
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCch----------------hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDV----------------RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG 290 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~----------------~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~ 290 (360)
. .-+.+|.+.|..++++.|++. .+++|.|.++...|.-.+ |++-|+.++.+.
T Consensus 84 ~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-------A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 T-----EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK-------AEEQLALATSMK 151 (213)
T ss_dssp T-----TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH-------HHHHHHHHHTTC
T ss_pred c-----ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHH-------HHHHHHHHHHcC
Confidence 1 224667778888898887766 999999999988777544 444555555543
Q ss_pred C
Q 036322 291 N 291 (360)
Q Consensus 291 n 291 (360)
+
T Consensus 152 p 152 (213)
T 1hh8_A 152 S 152 (213)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0077 Score=55.93 Aligned_cols=178 Identities=9% Similarity=-0.074 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHH--HHHHHHHHHHHHHhccC-CCc-chHHHHHHhhhhhhhhcchhHHHHH
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVRE--ELKLHFSCKLRRLLLEG-DVI-SVEEQKRILKGLDYQFMNKDKIASL 223 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~G--eLKl~~s~~Lr~lla~~-~p~-s~~~~~r~~~~ld~~~~~k~~~~~a 223 (360)
+|.+++.++|.++|+...|.+.=|.++...| .+...+ .-+..+|... .-+ .=+.|+.++..+-......
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL-~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~------ 123 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDEL-DWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND------ 123 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHH-HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC------
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHH-HHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc------
Confidence 5789999999999999999999999998777 333221 1122333222 111 1344666663321111000
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 224 LVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 224 L~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
.-+.++-.-+..+++++|..+.|.++=|.+|..-+.-. ..++++-++.++.. ++....|.++=|.
T Consensus 124 ---------~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~-----~~~EL~~~~~~i~~-d~~N~sAW~~R~~ 188 (306)
T 3dra_A 124 ---------FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHN-----DAKELSFVDKVIDT-DLKNNSAWSHRFF 188 (306)
T ss_dssp ---------CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccC-----hHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 01355667889999999999999999999998744311 12677777888875 4445789999999
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 304 ALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 304 ALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
.|..+-+.. ...+++.++.++..+|.++|+|..+-.=+.-+...
T Consensus 189 ll~~l~~~~------~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 189 LLFSKKHLA------TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER 232 (306)
T ss_dssp HHHSSGGGC------CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHhccccc------hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 988764321 24579999999999999999999987665555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0052 Score=54.58 Aligned_cols=160 Identities=15% Similarity=0.009 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHc------CcCChHHHhhhhhhHHHHHHHHHHHHHHHHH--HhccCCCcchHHHHHHhhhhhhhhcch
Q 036322 146 LHKSARLLSQAIAM------QHMSLLAVDQLGNTYLVREELKLHFSCKLRR--LLLEGDVISVEEQKRILKGLDYQFMNK 217 (360)
Q Consensus 146 L~~Aa~~~s~Al~~------~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~--lla~~~p~s~~~~~r~~~~ld~~~~~k 217 (360)
+.+|...|.+|+.+ .|....+++++|.+|...|....-+.--.++ +....+.. ......+.
T Consensus 117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~---------- 185 (378)
T 3q15_A 117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY-SIRTIQSL---------- 185 (378)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC-HHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc-hhhHHHHH----------
Confidence 34677888888877 3445679999999999988776543321111 11111100 00001111
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCC------CchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccC
Q 036322 218 DKIASLLVDACEECEELLVKAGRKYRLALSIDG------NDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGN 291 (360)
Q Consensus 218 ~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp------~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n 291 (360)
-.++.+....+ -+.+|.+.|..|+++.+ ....+++|-|.+....+.-.+|...|.+|++-++.. .+
T Consensus 186 ~~lg~~y~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~ 257 (378)
T 3q15_A 186 FVIAGNYDDFK-----HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VP 257 (378)
T ss_dssp HHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CG
T ss_pred HHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CC
Confidence 12233332222 13344445555554422 345689999999888888888888888888876543 22
Q ss_pred CChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhcc
Q 036322 292 IYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHM 336 (360)
Q Consensus 292 ~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrL 336 (360)
+..+.++++.|..+..+-. ..+|...|++|+.+
T Consensus 258 ~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~ 290 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQ------------TQKAFQFIEEGLDH 290 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHH
Confidence 3348999999999865542 34566666666666
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00035 Score=50.07 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCcCChH-HHhhhhhhHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLL-AVDQLGNTYLVREE 179 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~-Avgn~GNalL~~Ge 179 (360)
+.+|++.|.++++++|.++. ++.++|.+|...|+
T Consensus 16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~ 50 (99)
T 2kc7_A 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD 50 (99)
T ss_dssp HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999 99999988885443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.011 Score=56.11 Aligned_cols=186 Identities=10% Similarity=-0.028 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHH--HHHHHHHHHHHHhccCCCcchHH---HHHHhhhhhhh
Q 036322 139 EERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREE--LKLHFSCKLRRLLLEGDVISVEE---QKRILKGLDYQ 213 (360)
Q Consensus 139 e~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~Ge--LKl~~s~~Lr~lla~~~p~s~~~---~~r~~~~ld~~ 213 (360)
++....++..+..++..++.++|.++.|...=|.++-..|. .. +...-+..++.. +|-.-.. ++-++..+.
T Consensus 83 ~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~-~EL~~~~k~l~~-dprNy~AW~~R~~vl~~l~-- 158 (331)
T 3dss_A 83 PEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA-RELELCARFLEA-DERNFHCWDYRRFVAAQAA-- 158 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHH-HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT--
T ss_pred chhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHH-HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhC--
Confidence 34456779999999999999999999999999987776553 11 111112333332 2332212 223333221
Q ss_pred hcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhccc--c-----hhcHHHHHHHHHHHHHHH
Q 036322 214 FMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLE--T-----AFDADKIFSAAIDNFDAM 286 (360)
Q Consensus 214 ~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~--~-----a~eAe~L~~aA~dKY~AA 286 (360)
..+.++...|..+|+.+|.++.|.++=|.+|.... . .......+.++++-|+.+
T Consensus 159 -------------------~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~a 219 (331)
T 3dss_A 159 -------------------VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 219 (331)
T ss_dssp -------------------CCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHH
T ss_pred -------------------cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHH
Confidence 11355667899999999999999999999987621 1 111247899999999999
Q ss_pred HhccCCChhHHHh-hHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhh
Q 036322 287 MLKGNIYAPDALF-GWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSC 350 (360)
Q Consensus 287 l~~~n~~ap~AL~-NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c 350 (360)
+...| ..+.|.+ .-|+..+... ++..+.++...++.++..|.++|.++||+.=+..++..+
T Consensus 220 i~~~P-~d~SaW~Y~r~ll~~~~~--~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~ 281 (331)
T 3dss_A 220 FFTDP-NDQSAWFYHRWLLGAGSG--RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 281 (331)
T ss_dssp HHHST-TCHHHHHHHHHHHHSSSC--GGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhCC-CCHHHHHHHHHHHHhccC--ccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHH
Confidence 98755 4466664 4455443322 122347899999999999999999999997776665544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0069 Score=57.44 Aligned_cols=170 Identities=11% Similarity=-0.015 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHH------HHHHHHHH---HHHhccCCCcch---HHHHHHhhhhhhhhc
Q 036322 148 KSARLLSQAIAMQHMSLLAVDQLGNTYLVREEL------KLHFSCKL---RRLLLEGDVISV---EEQKRILKGLDYQFM 215 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeL------Kl~~s~~L---r~lla~~~p~s~---~~~~r~~~~ld~~~~ 215 (360)
+|.+++.++|.++|++.-|...=|.++...|.- +..+..+| ..+|... |-+. +.++-++..+..
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~--- 123 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE--- 123 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSS---
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCc---
Confidence 478899999999999999999999888766541 11133344 2333322 3221 223344443321
Q ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChh
Q 036322 216 NKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAP 295 (360)
Q Consensus 216 ~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap 295 (360)
..+.++-.-|..++++||..+.|.++=|.+|...+. .+.++++-|+.++.. ++...
T Consensus 124 -----------------~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~------~~~eel~~~~~~I~~-~p~N~ 179 (331)
T 3dss_A 124 -----------------PNWARELELCARFLEADERNFHCWDYRRFVAAQAAV------APAEELAFTDSLITR-NFSNY 179 (331)
T ss_dssp -----------------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHH-CSCCH
T ss_pred -----------------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc------CHHHHHHHHHHHHHH-CCCCH
Confidence 024566668999999999999999999999988553 257788888888885 55668
Q ss_pred HHHhhHHHHHHHhhhcCCCC--hHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 296 DALFGWAVALQQRSRLRPRN--SKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 296 ~AL~NWGlALqerA~lr~~s--skEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
.|.++=|..|..+-.-.+.+ .+.....+..++.++..||.++|++..+-.
T Consensus 180 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~ 231 (331)
T 3dss_A 180 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF 231 (331)
T ss_dssp HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999998773222110 011235799999999999999999998864
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.001 Score=48.80 Aligned_cols=70 Identities=10% Similarity=0.067 Sum_probs=45.9
Q ss_pred hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 036322 253 VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRL 329 (360)
Q Consensus 253 ~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~k 329 (360)
..+++|.|.++...+.-.+|...+..|++.+...-. +...+.++++.|..+..+-. ..++.+.+++|...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLGNAYTALGN-----HDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc--hHhHHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHH
Confidence 678899999988888888899999888887753211 11235778888877655532 33444444444443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0085 Score=52.99 Aligned_cols=148 Identities=14% Similarity=0.003 Sum_probs=91.3
Q ss_pred HHHHhhhhHHHHhhhhcC-CchHHHHHHH------------HHHHHHHHHHHHcC-------cCChHHHhhhhhhHHHHH
Q 036322 119 LTEANDLPKHAKECMKSG-WDEERAEMIL------------HKSARLLSQAIAMQ-------HMSLLAVDQLGNTYLVRE 178 (360)
Q Consensus 119 v~ea~~Llk~are~~~~~-~De~~Ad~lL------------~~Aa~~~s~Al~~~-------P~s~~Avgn~GNalL~~G 178 (360)
.++|...+++|-+..+.. ++.+.++... .+|...|.+|+++. |....++.++|.+|...|
T Consensus 119 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g 198 (383)
T 3ulq_A 119 YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLK 198 (383)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhc
Confidence 467777788877765553 3444554432 45788899999984 444569999999999988
Q ss_pred HHHHHHHHHHHHHh---ccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhh-----hC-
Q 036322 179 ELKLHFSCKLRRLL---LEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALS-----ID- 249 (360)
Q Consensus 179 eLKl~~s~~Lr~ll---a~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~-----~d- 249 (360)
+...-+.. +..++ ...+. ......+. -+++...... .-+.+|.+.|..|++ .+
T Consensus 199 ~~~~A~~~-~~~al~~~~~~~~--~~~~~~~~----------~~lg~~y~~~-----g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 199 QYEDAISH-FQKAYSMAEAEKQ--PQLMGRTL----------YNIGLCKNSQ-----SQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp CHHHHHHH-HHHHHHHHHHTTC--HHHHHHHH----------HHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTCG
T ss_pred CHHHHHHH-HHHHHHHHHHcCC--hHHHHHHH----------HHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhhccc
Confidence 87654322 11122 11100 00011111 1122222222 224556666677776 46
Q ss_pred CCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHH
Q 036322 250 GNDVRALYNWGLALFFLETAFDADKIFSAAIDNFD 284 (360)
Q Consensus 250 p~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~ 284 (360)
|....+++|-|.++...|...+|...|.+|++-..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 88899999999999988888888888888887654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0016 Score=44.97 Aligned_cols=65 Identities=23% Similarity=0.197 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
+.+|.+.|..|++++|++..++++.|.++...+...+|. +-|+.++.+.+ ..+.++++.|.++..
T Consensus 25 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-------~~~~~a~~~~p-~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI-------EYYQKALELDP-NNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-------HHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHhcCC-CCHHHHHHHHHHHHh
Confidence 456777899999999999999999999998877754444 44555555433 458999999998764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00049 Score=51.12 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=54.2
Q ss_pred hCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHH
Q 036322 248 IDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQAR 327 (360)
Q Consensus 248 ~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~ 327 (360)
.+|++..++|+-|.++...+. |.+|++-|+.++.+.+ ..+.++++.|.++..+-. +.+|+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~------------~~~A~ 61 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDN-------ASRALALFEELVETDP-DYVGTYYHLGKLYERLDR------------TDDAI 61 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTC------------HHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCC------------HHHHH
Confidence 479999999999999988776 4566666666666534 458999999999876653 56778
Q ss_pred HHHHHhhccCCCch
Q 036322 328 RLYQDALHMNSDNL 341 (360)
Q Consensus 328 ~kye~ALrLdpd~~ 341 (360)
..|++||.+.|+.+
T Consensus 62 ~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 62 DTYAQGIEVAREEG 75 (100)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhhcCC
Confidence 88888888876543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.022 Score=44.49 Aligned_cols=153 Identities=12% Similarity=0.076 Sum_probs=85.2
Q ss_pred cCc-CChHHHhhhhhhHHHHHHHHHHHHHHHHHHh---ccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHh--hHHHH
Q 036322 159 MQH-MSLLAVDQLGNTYLVREELKLHFSCKLRRLL---LEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDA--CEECE 232 (360)
Q Consensus 159 ~~P-~s~~Avgn~GNalL~~GeLKl~~s~~Lr~ll---a~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~--~eEaE 232 (360)
.+| ....++.++|++|...|+...-+.. ++.++ ...+.+ .....+.. .++...... -++|.
T Consensus 20 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~~~~~~~--~~~~~~~~----------~l~~~~~~~g~~~~A~ 86 (203)
T 3gw4_A 20 AHPATASGARFMLGYVYAFMDRFDEARAS-FQALQQQAQKSGDH--TAEHRALH----------QVGMVERMAGNWDAAR 86 (203)
T ss_dssp TSTTTHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHTTCCH--HHHHHHHH----------HHHHHHHHTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHH-HHHHHHHHHHcCCc--HHHHHHHH----------HHHHHHHHcCCHHHHH
Confidence 355 6788999999999999887643221 12222 111110 11111111 122222222 24455
Q ss_pred HHHHHHHHHHHHHhhhCC-CchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 233 ELLVKAGRKYRLALSIDG-NDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp-~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
+.+.+|.+.+... .-+| ....+++|-|.++...|...+|...+.+|++-+...-. +.....++++.|..+..+-
T Consensus 87 ~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g-- 161 (203)
T 3gw4_A 87 RCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--QVAIACAFRGLGDLAQQEK-- 161 (203)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHCc--
Confidence 5555544444321 0022 34567889998888888888899999999887642111 1112356677777766543
Q ss_pred CCCChHHHHHHHHHHHHHHHH
Q 036322 312 RPRNSKEKVKLLQQARRLYQD 332 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ 332 (360)
...++.+.+++|...+++
T Consensus 162 ---~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 162 ---NLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp ---CHHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHH
Confidence 255777777777776664
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0012 Score=48.98 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 236 VKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
.+|.+.|..|++++|++..++++-|.++...+...+|...|..|++-
T Consensus 24 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 24 SRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44556889999999999999999999998888877777776666654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.01 Score=67.32 Aligned_cols=210 Identities=12% Similarity=0.054 Sum_probs=126.7
Q ss_pred HHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHc--CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 036322 119 LTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAM--QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGD 196 (360)
Q Consensus 119 v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~--~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~ 196 (360)
+-+.+.+..+|-++.+.......|-..|.+++.-|.+|++. ++.++.+.+++|.|++..|+.+.-+..=.+ ..+
T Consensus 1058 Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiK----AdD 1133 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIK----ADD 1133 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHh----cCC
Confidence 33445556667677666677777767778889999999887 699999999999999999998865554323 233
Q ss_pred CcchHHHHHHhhhhhhhhcchhHHHHHHHHh-------------hHHHHHHHH----HHHHHHHHHhhhCCCchhhHHhH
Q 036322 197 VISVEEQKRILKGLDYQFMNKDKIASLLVDA-------------CEECEELLV----KAGRKYRLALSIDGNDVRALYNW 259 (360)
Q Consensus 197 p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~-------------~eEaEeLL~----eAgrKY~~Al~~dp~d~~ALYNW 259 (360)
|.....-+..+..+. +...++... .+++..+-. ++...| +++.....+++|
T Consensus 1134 ~say~eVa~~~~~lG-------kyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f-----I~~~n~ad~~~i 1201 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSG-------NWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF-----INGPNNAHIQQV 1201 (1630)
T ss_pred hHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH-----HhCCCHHHHHHH
Confidence 332222222222211 111111110 001110000 112222 244556789999
Q ss_pred HHhhhcccchhcHHHHHHHHH------------HHHHHHHhc-cCCChhHHHhhHHHHH-----HHhhhcCC----CCh-
Q 036322 260 GLALFFLETAFDADKIFSAAI------------DNFDAMMLK-GNIYAPDALFGWAVAL-----QQRSRLRP----RNS- 316 (360)
Q Consensus 260 GlAL~~~~~a~eAe~L~~aA~------------dKY~AAl~~-~n~~ap~AL~NWGlAL-----qerA~lr~----~ss- 316 (360)
|..+-..|.-.+|-.+|..|- .+|++|++. .....++++.+|+.|. -.+|+.-. ..+
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~d 1281 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD 1281 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHH
Confidence 999999887777777777763 234544442 1124579999999997 34444322 011
Q ss_pred --------HHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 317 --------KEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 317 --------kEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
-|+.-.++.|+++|+.||.++|.....-
T Consensus 1282 eLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A 1282 ELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence 2334457789999999999998776554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.13 Score=44.17 Aligned_cols=201 Identities=13% Similarity=0.081 Sum_probs=111.6
Q ss_pred HhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChH------HHhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 036322 122 ANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLL------AVDQLGNTYLVREELKLHFSCKLRRLLLEG 195 (360)
Q Consensus 122 a~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~------Avgn~GNalL~~GeLKl~~s~~Lr~lla~~ 195 (360)
...+..++...+.-++ ..+|.+.|.+++...|.... ..+++|..+...|....-+. .+..++.-.
T Consensus 75 ~~~l~~~~~~~~~~~~--------y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~al~~~ 145 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKR--------YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCIL-ELKKLLNQQ 145 (293)
T ss_dssp HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHH-HHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhh--------HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHH
Confidence 3445555555544333 33567788888888776543 35566666665544432221 223333211
Q ss_pred CCc-chHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHh---hhCCCc----hhhHHhHHHhhhccc
Q 036322 196 DVI-SVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLAL---SIDGND----VRALYNWGLALFFLE 267 (360)
Q Consensus 196 ~p~-s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al---~~dp~d----~~ALYNWGlAL~~~~ 267 (360)
... .......+.. .++.+....+ -+.+|-..|..|+ +..|++ ..+++|-|.++..-+
T Consensus 146 ~~~~~~~~~~~~~~----------~lg~~y~~~~-----~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~ 210 (293)
T 2qfc_A 146 LTGIDVYQNLYIEN----------AIANIYAENG-----YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS 210 (293)
T ss_dssp CCSSCTTHHHHHHH----------HHHHHHHHTT-----CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCchHHHHHHHH----------HHHHHHHHcC-----CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh
Confidence 000 0000011111 1223332222 2334445555555 334553 279999999999988
Q ss_pred chhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHH-HHHHHHHHHHHHHhhccCCCchHHHHH
Q 036322 268 TAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEK-VKLLQQARRLYQDALHMNSDNLQVREA 346 (360)
Q Consensus 268 ~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk-~~Ll~qA~~kye~ALrLdpd~~qa~~A 346 (360)
.-.+|...|.+|++-... .. .....+.+|++.|..+..+-. ..++ ...+++|...++. -+++...+.
T Consensus 211 ~y~~Al~~~~kal~~~~~-~~-~~~~~~~~~~~lg~~y~~~g~-----~~~Ai~~~~~~Al~~~~~-----~~~~~~~~~ 278 (293)
T 2qfc_A 211 RYEESLYQVNKAIEISCR-IN-SMALIGQLYYQRGECLRKLEY-----EEAEIEDAYKKASFFFDI-----LEMHAYKEA 278 (293)
T ss_dssp CHHHHHHHHHHHHHHHHH-TT-BCSSHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH-----TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHh-cC-cHHHHHHHHHHHHHHHHHcCC-----cHHHHHHHHHHHHHHHHH-----hCcHhhHHH
Confidence 888888888888876532 11 222347899999999876653 3455 5667777776653 356666777
Q ss_pred HHhhhhhcccCC
Q 036322 347 LSSCMSELNHGD 358 (360)
Q Consensus 347 l~~c~~el~~~~ 358 (360)
+..=++-|.|++
T Consensus 279 ~~~~~~~~~~~~ 290 (293)
T 2qfc_A 279 LVNKISRLEHHH 290 (293)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHhhcc
Confidence 888888887765
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.1 Score=44.82 Aligned_cols=227 Identities=13% Similarity=0.068 Sum_probs=119.1
Q ss_pred chhhhhhcccCCCCCCC--CccccccccccccccCCCCCcccchHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHH
Q 036322 71 QIYSSMLREEKVNPEDD--SHLTDHLRARESEISSSSSSKFIDDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHK 148 (360)
Q Consensus 71 ~~~~s~~~~~~~~~~~~--~~l~~~~~~~~~e~~~~~s~~~~d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~ 148 (360)
.++=|++..+...|..+ ..|.+.+.++-.++-...... +...+..+.+.+..+++ .++ +.+
T Consensus 31 ~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~--~~~~~~~l~~~i~~~~~-------~~~--------y~~ 93 (293)
T 3u3w_A 31 QSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYS--DIERKKQFKDQVIMLCK-------QKR--------YKE 93 (293)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHHTTTSS--CHHHHHHHHHHHHHHHH-------TTC--------HHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhCCCCCC--cchhHHHHHHHHHHHHH-------Hhh--------HHH
Confidence 44556666665544332 234555556655554333221 12223333333333333 222 356
Q ss_pred HHHHHHHHHHcCcCChHH------HhhhhhhHHHHHHHHHHHHHHHHHHhccC-CCcchHHHHHHhhhhhhhhcchhHHH
Q 036322 149 SARLLSQAIAMQHMSLLA------VDQLGNTYLVREELKLHFSCKLRRLLLEG-DVISVEEQKRILKGLDYQFMNKDKIA 221 (360)
Q Consensus 149 Aa~~~s~Al~~~P~s~~A------vgn~GNalL~~GeLKl~~s~~Lr~lla~~-~p~s~~~~~r~~~~ld~~~~~k~~~~ 221 (360)
|.++|.+++...|..+.- +..+|..+...|....-+. .+..++.-. ..........++. .++
T Consensus 94 a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~-~~~~al~~~~~~~~~~~~~~~~~----------~lg 162 (293)
T 3u3w_A 94 IYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCIL-ELKKLLNQQLTGIDVYQNLYIEN----------AIA 162 (293)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHH-HHHHHHHTCCCCSCTTHHHHHHH----------HHH
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHH-HHHHHHHHhcccccHHHHHHHHH----------HHH
Confidence 677788888877776652 2347777665543332211 223333211 0110001111111 223
Q ss_pred HHHHHh--hHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHh
Q 036322 222 SLLVDA--CEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALF 299 (360)
Q Consensus 222 ~aL~~~--~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~ 299 (360)
.+.... -++|.+.+..|-+.+...-...+....+|+|-|.++..-+.-.+|...+.+|++-....- .....+.+|+
T Consensus 163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~--~~~~~~~~~~ 240 (293)
T 3u3w_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN--SMALIGQLYY 240 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--BCTTHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC--cHHHHHHHHH
Confidence 333222 255556665555544433234455667999999999998887788888888877654211 1223478999
Q ss_pred hHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 036322 300 GWAVALQQRSRLRPRNSKEKVKLLQQARRLYQ 331 (360)
Q Consensus 300 NWGlALqerA~lr~~sskEk~~Ll~qA~~kye 331 (360)
+-|.++..+-. .-.++.+.+++|...++
T Consensus 241 ~lg~~~~~~g~----~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 241 QRGECLRKLEY----EEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC----cHHHHHHHHHHHHHHHH
Confidence 99999876542 12566667777776665
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.012 Score=58.01 Aligned_cols=162 Identities=7% Similarity=-0.039 Sum_probs=101.9
Q ss_pred chHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHc-CcCChHHHhhhhhhHHHHHHHHHHHHHHHH
Q 036322 111 DDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAM-QHMSLLAVDQLGNTYLVREELKLHFSCKLR 189 (360)
Q Consensus 111 d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~-~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr 189 (360)
+.+.....++.+..++.++......| +.+.|..++.++.+...+.+-- .|.-...+.|||.+|...|+
T Consensus 298 s~e~v~~~l~~a~~~le~a~~~~~qg-~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~---------- 366 (490)
T 3n71_A 298 SQEVVKEMIQFSKDTLEKIDKARSEG-LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA---------- 366 (490)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC----------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC----------
Confidence 34566777777888887776653322 3344555555555444444332 34455666777766654322
Q ss_pred HHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh-CCCchhhHHhHHHhhhcccc
Q 036322 190 RLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSI-DGNDVRALYNWGLALFFLET 268 (360)
Q Consensus 190 ~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~-dp~d~~ALYNWGlAL~~~~~ 268 (360)
-++|+.++..|-.-|..++=. .|+-..+|+|-|.++..-|.
T Consensus 367 --------------------------------------~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~ 408 (490)
T 3n71_A 367 --------------------------------------YEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGH 408 (490)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC
Confidence 245667777777777777633 45667889999999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHH
Q 036322 269 AFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQA 326 (360)
Q Consensus 269 a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA 326 (360)
-.+|+.+|.+|.+=++.++..--++-.+.+.+-+.+..++-+. ++++.+...|
T Consensus 409 ~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~-----~~ae~~~~~~ 461 (490)
T 3n71_A 409 IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF-----RQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 9999999999999998877632222235666666665444332 3444455444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.073 Score=49.28 Aligned_cols=98 Identities=22% Similarity=0.190 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+-|..|++. ++..|+|+-|..+...+. .+=+.+|++-|+.++..+ .|+|+++.|..+..--.+. .
T Consensus 312 ~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~----~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~-~ 381 (490)
T 2xm6_A 312 REQAISWYTKSAEQ--GDATAQANLGAIYFRLGS----EEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVK-K 381 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCC----HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC-C
T ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCC----cccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC-C
Confidence 45677777777765 567899998888765321 123456666666666653 3899999999987643222 2
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
+ .++|+..|+.|+.. +++.+..-|-.|-
T Consensus 382 ~-------~~~A~~~~~~A~~~--~~~~a~~~Lg~~y 409 (490)
T 2xm6_A 382 D-------EQQAAIWMRKAAEQ--GLSAAQVQLGEIY 409 (490)
T ss_dssp C-------HHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 2 34566666666654 3566665555543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.014 Score=51.02 Aligned_cols=88 Identities=16% Similarity=0.047 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhhCC--C----chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHh
Q 036322 235 LVKAGRKYRLALSIDG--N----DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQR 308 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp--~----d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqer 308 (360)
+.+|...|..|+++.+ + ...++.|.|.++.. +...+|...|.+|++-|... . .+.....+|+|.|..+..+
T Consensus 92 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~-~~~~~~~~~~~lg~~~~~~ 168 (307)
T 2ifu_A 92 MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-E-RLRQAAELIGKASRLLVRQ 168 (307)
T ss_dssp GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-C-ChhHHHHHHHHHHHHHHHc
Confidence 3445555566655522 2 24789999999988 88888888888888777531 0 0112368899999998765
Q ss_pred hhcCCCChHHHHHHHHHHHHHH
Q 036322 309 SRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 309 A~lr~~sskEk~~Ll~qA~~ky 330 (360)
-+ -.++...+++|+..+
T Consensus 169 g~-----~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 169 QK-----FDEAAASLQKEKSMY 185 (307)
T ss_dssp TC-----HHHHHHHHHHHHHHH
T ss_pred CC-----HHHHHHHHHHHHHHH
Confidence 43 334444444444433
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.088 Score=46.72 Aligned_cols=146 Identities=15% Similarity=0.039 Sum_probs=88.3
Q ss_pred HHHHhhhhHHHHhhhhc-CCchHHHHHH------------HHHHHHHHHHHHHcCcC-------ChHHHhhhhhhHHHHH
Q 036322 119 LTEANDLPKHAKECMKS-GWDEERAEMI------------LHKSARLLSQAIAMQHM-------SLLAVDQLGNTYLVRE 178 (360)
Q Consensus 119 v~ea~~Llk~are~~~~-~~De~~Ad~l------------L~~Aa~~~s~Al~~~P~-------s~~Avgn~GNalL~~G 178 (360)
.++|...+++|.+..+. +++.+.++.. +..|...|.+|+++.|. ...++.++|++|...|
T Consensus 117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~ 196 (378)
T 3q15_A 117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK 196 (378)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC
Confidence 46778888888776655 3444444433 24678889999987443 3567889999999988
Q ss_pred HHHHHHHHHHHHHhc---cCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhh-----hCC
Q 036322 179 ELKLHFSCKLRRLLL---EGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALS-----IDG 250 (360)
Q Consensus 179 eLKl~~s~~Lr~lla---~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~-----~dp 250 (360)
+...-+.. +..++. ..+.+ .....+ ..+++.+.... .-+.+|.+-|..|++ .+|
T Consensus 197 ~~~~A~~~-~~~al~~~~~~~~~--~~~~~~----------~~~lg~~y~~~-----~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 197 HYDKALPH-LEAALELAMDIQND--RFIAIS----------LLNIANSYDRS-----GDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp CHHHHHHH-HHHHHHHHHHTTCH--HHHHHH----------HHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHH-HHHHHHHHHHcCCH--HHHHHH----------HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhhCCh
Confidence 77644321 111121 11000 000111 11222222222 224555556666666 678
Q ss_pred CchhhHHhHHHhhhcccchhcHHHHHHHHHHH
Q 036322 251 NDVRALYNWGLALFFLETAFDADKIFSAAIDN 282 (360)
Q Consensus 251 ~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dK 282 (360)
....+++|.|.+....|...+|...|.+|++-
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88999999999998888877788777777764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.026 Score=44.74 Aligned_cols=86 Identities=13% Similarity=-0.009 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhCCCchhhHHhHHHhhhc----ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCC
Q 036322 238 AGRKYRLALSIDGNDVRALYNWGLALFF----LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRP 313 (360)
Q Consensus 238 AgrKY~~Al~~dp~d~~ALYNWGlAL~~----~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~ 313 (360)
|.+-|..|.+. ++..|.||-|..+.. +.+...|..+|..|++ .++ |+|.++.|..+..=-- .+
T Consensus 44 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-------~g~---~~a~~~Lg~~y~~G~g-~~ 110 (138)
T 1klx_A 44 LFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG-------LND---QDGCLILGYKQYAGKG-VV 110 (138)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-------TTC---HHHHHHHHHHHHHTSS-SC
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc-------CCC---HHHHHHHHHHHHCCCC-CC
Confidence 45556666554 789999999999987 6676667777766654 333 8999999999876422 22
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 314 RNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 314 ~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
.+ ++.|+..|+.|..+ +++.+..
T Consensus 111 ~d-------~~~A~~~~~~Aa~~--g~~~A~~ 133 (138)
T 1klx_A 111 KN-------EKQAVKTFEKACRL--GSEDACG 133 (138)
T ss_dssp CC-------HHHHHHHHHHHHHT--TCHHHHH
T ss_pred cC-------HHHHHHHHHHHHHC--CCHHHHH
Confidence 32 44567777777766 4454443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.037 Score=54.11 Aligned_cols=129 Identities=11% Similarity=-0.021 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|..+|++|++++|+...|+.-++-+|..+ .. .. |... . .
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~------~~--------~~-~~~~-~--~-------------------- 256 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVR------HS--------QH-PLDE-K--Q-------------------- 256 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------HH--------HS-CCCH-H--H--------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------hc--------cC-CCch-h--h--------------------
Confidence 57899999999999999999999888777721 11 11 1110 0 0
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc--ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF--LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~--~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
. +-+..|.++ ..++..+|.+.. ..|++++.. .|. +.+|+.-+++|+.+.+ +..+|.--|.
T Consensus 257 -----~-~~l~~a~~a-~~a~~~~~~~a~--~~~alal~~l~~gd-------~d~A~~~l~rAl~Ln~--s~~a~~llG~ 318 (372)
T 3ly7_A 257 -----L-AALNTEIDN-IVTLPELNNLSI--IYQIKAVSALVKGK-------TDESYQAINTGIDLEM--SWLNYVLLGK 318 (372)
T ss_dssp -----H-HHHHHHHHH-HHTCGGGTTCHH--HHHHHHHHHHHHTC-------HHHHHHHHHHHHHHCC--CHHHHHHHHH
T ss_pred -----H-HHHHHHHHH-HHhcccCCcCHH--HHHHHHHHHHhCCC-------HHHHHHHHHHHHhcCC--CHHHHHHHHH
Confidence 0 011222221 134455666555 455555544 555 3556666667777632 2233322222
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchH
Q 036322 304 ALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQ 342 (360)
Q Consensus 304 ALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~q 342 (360)
. ..+.+. +.+|+..|+.|++|+|..+.
T Consensus 319 ~----~~~~G~--------~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 319 V----YEMKGM--------NREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp H----HHHTTC--------HHHHHHHHHHHHHHSCSHHH
T ss_pred H----HHHCCC--------HHHHHHHHHHHHhcCCCcCh
Confidence 2 223443 66789999999999998863
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.071 Score=46.49 Aligned_cols=123 Identities=14% Similarity=0.003 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCcCCh-----HHHhhhhhhHHHHHHHHHHHHHHHHHHh---ccCCCcchHHHHHHhhhhhhhhcchhH
Q 036322 148 KSARLLSQAIAMQHMSL-----LAVDQLGNTYLVREELKLHFSCKLRRLL---LEGDVISVEEQKRILKGLDYQFMNKDK 219 (360)
Q Consensus 148 ~Aa~~~s~Al~~~P~s~-----~Avgn~GNalL~~GeLKl~~s~~Lr~ll---a~~~p~s~~~~~r~~~~ld~~~~~k~~ 219 (360)
.|...|.+|++..|.+. .++.++|++|...|+...-.. .++.++ +..+.+. ....+ ...
T Consensus 32 ~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~--~~~~~----------~~~ 98 (373)
T 1hz4_A 32 EAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLA-LMQQTEQMARQHDVWH--YALWS----------LIQ 98 (373)
T ss_dssp HHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHTTCHH--HHHHH----------HHH
T ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHH-HHHHHHHHHHhcCcHH--HHHHH----------HHH
Confidence 45667777787766553 278899999998888764321 122222 2221110 00000 011
Q ss_pred HHHHHHHh--hHHHHHHHHHHHHHHHHHhhh-CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHH
Q 036322 220 IASLLVDA--CEECEELLVKAGRKYRLALSI-DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNF 283 (360)
Q Consensus 220 ~~~aL~~~--~eEaEeLL~eAgrKY~~Al~~-dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY 283 (360)
++.++... -++|.+++.+|-+.+...-.. .|....+++|.|.++...|...+|..++.+|++-.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 22222222 244455444444443322111 13445667777777777777777777777766543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.012 Score=56.70 Aligned_cols=114 Identities=9% Similarity=-0.009 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhhh--------CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 235 LVKAGRKYRLALSI--------DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 235 L~eAgrKY~~Al~~--------dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
+.+|...|..++++ .|.-...|.|-|.+....|.-.+|..++.+|.+-|++.+.-..+.--..|+|.|..+.
T Consensus 303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~ 382 (429)
T 3qwp_A 303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL 382 (429)
T ss_dssp HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH
Confidence 35666777788765 3444578899999998889999999999999999987765322222367999999998
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHH---HHhhhhhcc
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA---LSSCMSELN 355 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A---l~~c~~el~ 355 (360)
...+ -.|++.++++|...++.++ -||.|.+++. |.+|..||+
T Consensus 383 ~~g~-----~~eA~~~~~~Al~i~~~~l--G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 383 HQGM-----FPQAMKNLRLAFDIMRVTH--GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HTTC-----HHHHHHHHHHHHHHHHHHT--CTTSHHHHHHHHHHHHHHHHHH
T ss_pred hcCC-----HHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHh
Confidence 8665 5688999999999999874 6888887766 889999886
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.2 Score=43.62 Aligned_cols=109 Identities=12% Similarity=0.027 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhhCCCc----hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCC-ChhHHHhhHHHHHHHhhh
Q 036322 236 VKAGRKYRLALSIDGND----VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNI-YAPDALFGWAVALQQRSR 310 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d----~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~-~ap~AL~NWGlALqerA~ 310 (360)
.+|.+.|+.++...|.. ..++.+.|.++...|...+|..++.++++-... .+.. ...+++...|.++...-
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~---~~~~~~~~~~~~~la~~~~~~g- 307 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS---LRLMSDLNRNLLLLNQLYWQAG- 307 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CcchhhHHHHHHHHHHHHHHhC-
Confidence 45556677777776643 225677777777788888888888888877653 1211 22368888888876654
Q ss_pred cCCCChHHHHHHHHHHHHHHHHh----hccCCCchHHHHHHHhhhhh
Q 036322 311 LRPRNSKEKVKLLQQARRLYQDA----LHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 311 lr~~sskEk~~Ll~qA~~kye~A----LrLdpd~~qa~~Al~~c~~e 353 (360)
...++.+.+++|...++.. +-++ ..+.+...|..|...
T Consensus 308 ----~~~~A~~~l~~al~~~~~~g~~~~~~~-~g~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 308 ----RKSDAQRVLLDALKLANRTGFISHFVI-EGEAMAQQLRQLIQL 349 (373)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHCCCHHHHT-THHHHHHHHHHHHHT
T ss_pred ----CHHHHHHHHHHHHHHhccccHHHHHHH-ccHHHHHHHHHHHhC
Confidence 2567888888888777641 1111 225566666776543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.014 Score=44.94 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=60.1
Q ss_pred CCCchhhHHhHHHhhhcccc---hhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHH
Q 036322 249 DGNDVRALYNWGLALFFLET---AFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQ 325 (360)
Q Consensus 249 dp~d~~ALYNWGlAL~~~~~---a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~q 325 (360)
+|++.++++.+|.+|...+. ..+|..++. +++.+ ++..+.|++..|....+.. -.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~-------~AL~~-dp~~~rA~~~lg~~~~~~g------------~y~~ 61 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLE-------QALQL-EPYNEAALSLIANDHFISF------------RFQE 61 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHH-------HHHHH-CTTCHHHHHHHHHHHHHTT------------CHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH-------HHHHH-CcCCHHHHHHHHHHHHHcC------------CHHH
Confidence 69999999999999987333 455555554 55554 4456999999999966543 4678
Q ss_pred HHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 326 ARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 326 A~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
|+..|+.+|..+|+++. +.+|..-+
T Consensus 62 Ai~~w~~~l~~~p~~~~-~~~i~~~I 86 (93)
T 3bee_A 62 AIDTWVLLLDSNDPNLD-RVTIIESI 86 (93)
T ss_dssp HHHHHHHHHTCCCTTCC-HHHHHHHH
T ss_pred HHHHHHHHHhhCCCCcc-HHHHHHHH
Confidence 99999999999999543 44554444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.03 Score=55.22 Aligned_cols=120 Identities=12% Similarity=0.019 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh-CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 229 EECEELLVKAGRKYRLALSI-DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~-dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
++|+.++..|-..+..++-. .|+-..+|.|-|.++..-|.-.+|..++..|.+=|++.+.-..+.--..|+|.|..+..
T Consensus 326 ~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 405 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWH 405 (490)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45555555555555444422 45666889999999999999999999999999999877663222233789999999988
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHH---HHhhhhhcc
Q 036322 308 RSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREA---LSSCMSELN 355 (360)
Q Consensus 308 rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~A---l~~c~~el~ 355 (360)
..+ -.|++.++++|...++.++ -||.|.+.+. |.+|..|+.
T Consensus 406 ~G~-----~~eA~~~~~~Al~i~~~~l--G~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 406 AGH-----IEVGHGMICKAYAILLVTH--GPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp TTC-----HHHHHHHHHHHHHHHHHHT--CTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCC-----HHHHHHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHHHH
Confidence 754 5789999999999999875 6788777764 777877653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.5 Score=45.38 Aligned_cols=194 Identities=13% Similarity=0.026 Sum_probs=114.0
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHH-HHHHHHHHHHHHhccCCCcchHHHH-----HH
Q 036322 133 MKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREE-LKLHFSCKLRRLLLEGDVISVEEQK-----RI 206 (360)
Q Consensus 133 ~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~Ge-LKl~~s~~Lr~lla~~~p~s~~~~~-----r~ 206 (360)
+.+-+|.+.+..-+-...++++..++.+|.+..-+--.|.-|...+- +...-+ .+++.. ..+.. |+
T Consensus 35 ~~~~~D~elv~~~~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a----~~~~~~----~~~~~~~~~~RA 106 (301)
T 3u64_A 35 FTEEDDLDLVAQSLPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPA----QYLPED----EFEAQNEAYSRA 106 (301)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHH----HTSCGG----GHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHhccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCch----hhcchh----hHhhhhhhHHHH
Confidence 45568999998899999999999999999998766555544443322 111101 011111 00000 00
Q ss_pred ----hhhhhhhhcchhHHHHHHHH-hhHHHHHHHHHHHHHHHHHh-hhCCCchhhHHhHHHhhhc----ccchhcHHHHH
Q 036322 207 ----LKGLDYQFMNKDKIASLLVD-ACEECEELLVKAGRKYRLAL-SIDGNDVRALYNWGLALFF----LETAFDADKIF 276 (360)
Q Consensus 207 ----~~~ld~~~~~k~~~~~aL~~-~~eEaEeLL~eAgrKY~~Al-~~dp~d~~ALYNWGlAL~~----~~~a~eAe~L~ 276 (360)
.|+.+. ...+|-. .-.-|+.+-.-=.+++..++ .++|+++.+||==|++++. ......|-.+.
T Consensus 107 ~~Ly~ra~~y-------~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l 179 (301)
T 3u64_A 107 RKLYLRGARY-------ALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTV 179 (301)
T ss_dssp HHHHHHHHHH-------HHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhH
Confidence 111110 0111110 01112222111123344444 6799999999977887776 23456788888
Q ss_pred HHHHHHHHHHHhccCCC-hhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc-hHHHHHHH
Q 036322 277 SAAIDNFDAMMLKGNIY-APDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN-LQVREALS 348 (360)
Q Consensus 277 ~aA~dKY~AAl~~~n~~-ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~-~qa~~Al~ 348 (360)
..|..-.++++.+-+.+ ...|+.-.|..+..+--+-.+ .. +.|...|++||+|+|+. ..+.-...
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG-d~------ekA~~~ferAL~LnP~~~id~~v~YA 246 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG-GM------EKAHTAFEHLTRYCSAHDPDHHITYA 246 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC-CH------HHHHHHHHHHHHHCCTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC-CH------HHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 88888888888874432 345888888887766544444 23 34788999999999975 66655443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.043 Score=53.29 Aligned_cols=113 Identities=12% Similarity=0.009 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh-CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 229 EECEELLVKAGRKYRLALSI-DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~-dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
+||+.++..|-..+..++-. .|.-..+|.|-|.+...-|.-.+|..++..|.+-|++.+.-..+.--..|+|.|..+..
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 394 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMG 394 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 34444444444444333321 34556889999999999999999999999999999877663222223679999999988
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 308 RSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 308 rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
..+ -.|++.++++|...++.+ +-||.|.+.+...
T Consensus 395 qg~-----~~eA~~~~~~Al~i~~~~--lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 395 LEN-----KAAGEKALKKAIAIMEVA--HGKDHPYISEIKQ 428 (433)
T ss_dssp TTC-----HHHHHHHHHHHHHHHHHH--TCTTCHHHHHHHH
T ss_pred ccC-----HHHHHHHHHHHHHHHHHH--cCCCChHHHHHHH
Confidence 775 478999999999999986 5789999887543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.062 Score=53.31 Aligned_cols=100 Identities=11% Similarity=-0.004 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccc---hhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhc
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLET---AFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~---a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~l 311 (360)
-.+|-+.|..||+++|+.+.|.++=|.+|..-+. ......++.+|++=|+.++.. ++..++|+++=|.+|..+..-
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccc
Confidence 3577889999999999999999999999987322 234567899999999999886 445689999989998876421
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
.|+.+...|+++|.+||.+..|-.
T Consensus 124 ----------~~~~el~~~~k~l~~d~~N~~aW~ 147 (567)
T 1dce_A 124 ----------NWARELELCARFLEADERNFHCWD 147 (567)
T ss_dssp ----------CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ----------cHHHHHHHHHHHHhhccccccHHH
Confidence 256667777777777777766543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=95.67 E-value=0.1 Score=49.48 Aligned_cols=169 Identities=10% Similarity=0.034 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCc--CChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHH
Q 036322 147 HKSARLLSQAIAMQH--MSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLL 224 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P--~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL 224 (360)
.+|.+.|.+.|...| .+++++.-....||..|++.+-. ..|+.+.... |........++ ..++.+-
T Consensus 117 eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~-k~l~~~~~~~-~d~~~~~d~~l----------~~Laea~ 184 (310)
T 3mv2_B 117 DKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAS-TIFDNYTNAI-EDTVSGDNEMI----------LNLAESY 184 (310)
T ss_dssp HHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHS-CHHHHHHHHHH----------HHHHHHH
T ss_pred HHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcC-ccccccchHHH----------HHHHHHH
Confidence 467788888888887 89999999999999988876532 2344333222 20000000111 1122232
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhCCC--chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhc--cCCChhHHHhh
Q 036322 225 VDACEECEELLVKAGRKYRLALSIDGN--DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLK--GNIYAPDALFG 300 (360)
Q Consensus 225 ~~~~eEaEeLL~eAgrKY~~Al~~dp~--d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~--~n~~ap~AL~N 300 (360)
+.....++ -+..|..-|..+.+..|+ ....||| +....|.-.+|++.+.+..++|-..-++ .+.+.|++|.|
T Consensus 185 v~l~~g~~-~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN 260 (310)
T 3mv2_B 185 IKFATNKE-TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN 260 (310)
T ss_dssp HHHHHTCS-TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred HHHHhCCc-cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence 22222112 256677788888888887 6778999 3333688889999999777666211011 12356999977
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 301 WAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 301 WGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
-...-..+.+ .|.++++++.+++|++|-+++
T Consensus 261 ~i~l~~~lgk--------------~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 261 QITLALMQGL--------------DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHHHHTTC--------------TTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHhCh--------------HHHHHHHHHHHhCCCChHHHH
Confidence 6544333332 345677888899999998765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.04 Score=40.16 Aligned_cols=90 Identities=12% Similarity=0.013 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhhCCCch------hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 236 VKAGRKYRLALSIDGNDV------RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~------~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
.+|.+.|..|+++.+... .++++.|.++...+.-.+|...|..|++.+...-. +...+.++++.|..+..+-
T Consensus 26 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 103 (164)
T 3ro3_A 26 RDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQ 103 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHh
Confidence 344445555555444322 48889999888889888899999988887763211 1123578889998877654
Q ss_pred hcCCCChHHHHHHHHHHHHHHHH
Q 036322 310 RLRPRNSKEKVKLLQQARRLYQD 332 (360)
Q Consensus 310 ~lr~~sskEk~~Ll~qA~~kye~ 332 (360)
. ..++.+.+++|...++.
T Consensus 104 ~-----~~~A~~~~~~a~~~~~~ 121 (164)
T 3ro3_A 104 D-----YEKAIDYHLKHLAIAQE 121 (164)
T ss_dssp C-----HHHHHHHHHHHHHHHHH
T ss_pred h-----HHHHHHHHHHHHHHHHH
Confidence 3 45666666666655543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.05 Score=46.85 Aligned_cols=90 Identities=10% Similarity=0.021 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhhCCCchh------hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHh
Q 036322 235 LVKAGRKYRLALSIDGNDVR------ALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQR 308 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~------ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqer 308 (360)
+.+|...|..|+.+.+...+ +++|-|.+....|.-..|...|.+|++.++..-. .+...+.+|+|-|..+..+
T Consensus 131 ~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~nlg~~y~~~ 209 (293)
T 3u3w_A 131 YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp HHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHH
Confidence 46677788888886554333 7899999988888888899999999887764211 1112357999999998776
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhhccC
Q 036322 309 SRLRPRNSKEKVKLLQQARRLYQDALHMN 337 (360)
Q Consensus 309 A~lr~~sskEk~~Ll~qA~~kye~ALrLd 337 (360)
-. ..+|+..|++||.+.
T Consensus 210 ~~------------y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 210 SR------------YEESLYQVNKAIEIS 226 (293)
T ss_dssp TC------------HHHHHHHHHHHHHHH
T ss_pred hH------------HHHHHHHHHHHHHHH
Confidence 53 344555555555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.59 Score=43.32 Aligned_cols=142 Identities=10% Similarity=-0.043 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHH-HH--HHHHHHH---HHHhccCCCcchH---HHHHHhhhhhhhhc
Q 036322 145 ILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREE-LK--LHFSCKL---RRLLLEGDVISVE---EQKRILKGLDYQFM 215 (360)
Q Consensus 145 lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~Ge-LK--l~~s~~L---r~lla~~~p~s~~---~~~r~~~~ld~~~~ 215 (360)
.+.++.+++.++|.++|.+..|.+.-|.++..... +. .....+| ..+|.. +|-.-. .++-++..+.. .
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~-~pkny~aW~~R~~vl~~l~~-~- 160 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS-DPKNHHVWSYRKWLVDTFDL-H- 160 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC-T-
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcc-c-
Confidence 46788999999999999999999999988822111 10 1122222 333333 233221 12333333321 0
Q ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChh
Q 036322 216 NKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAP 295 (360)
Q Consensus 216 ~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap 295 (360)
+ +.++...+..+|++||.++.|.++=|.+|...+... -..++.++++-++.++.+ ++...
T Consensus 161 -------------~-----~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~-~~~~~~eEl~~~~~aI~~-~p~n~ 220 (306)
T 3dra_A 161 -------------N-----DAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA-TDNTIDEELNYVKDKIVK-CPQNP 220 (306)
T ss_dssp -------------T-----CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC-CHHHHHHHHHHHHHHHHH-CSSCH
T ss_pred -------------C-----hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc-hhhhHHHHHHHHHHHHHh-CCCCc
Confidence 0 124556788899999999999999999888743311 245789999999988886 44567
Q ss_pred HHHhhHHHHHHHhh
Q 036322 296 DALFGWAVALQQRS 309 (360)
Q Consensus 296 ~AL~NWGlALqerA 309 (360)
.|.++-|..|...-
T Consensus 221 SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 221 STWNYLLGIHERFD 234 (306)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHhcC
Confidence 88888888876654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.051 Score=46.77 Aligned_cols=88 Identities=11% Similarity=0.022 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhhCCCc------hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCC--ChhHHHhhHHHHHH
Q 036322 235 LVKAGRKYRLALSIDGND------VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNI--YAPDALFGWAVALQ 306 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d------~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~--~ap~AL~NWGlALq 306 (360)
+.+|-..|..|+.+.+.. ..+++|-|.+....+.-.+|...|.+|++.++.. ++. ..+.+|+|-|..+.
T Consensus 131 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~---~~~~~~~~~~~~nlg~~y~ 207 (293)
T 2qfc_A 131 YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL---HDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp HHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---CccccchHHHHHhHHHHHH
Confidence 457777888888775543 5689999999998888888888888888777621 111 12379999999987
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHH
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLY 330 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~ky 330 (360)
..-. -.++...+++|+...
T Consensus 208 ~~~~-----y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 208 LDSR-----YEESLYQVNKAIEIS 226 (293)
T ss_dssp HTTC-----HHHHHHHHHHHHHHH
T ss_pred HHhh-----HHHHHHHHHHHHHHH
Confidence 6543 334444444444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.063 Score=40.76 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=49.5
Q ss_pred HHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCC
Q 036322 260 GLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSD 339 (360)
Q Consensus 260 GlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd 339 (360)
|..+-.-+.-..|..-|.+|++.++.--. .....+++|++.|.++..+.. ++.|+..|++|+.++|+
T Consensus 12 G~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~------------~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 12 GKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGD------------LDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHhcCCC
Confidence 33333344444444455555544431000 134568999999999876553 56799999999999999
Q ss_pred chHHHHHHH
Q 036322 340 NLQVREALS 348 (360)
Q Consensus 340 ~~qa~~Al~ 348 (360)
++.++.-+.
T Consensus 79 ~~~~~~n~~ 87 (104)
T 2v5f_A 79 HQRANGNLK 87 (104)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHhhHH
Confidence 999977654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.19 Score=39.17 Aligned_cols=94 Identities=11% Similarity=-0.011 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhcc-CC-ChhHHHhhHHHHHH
Q 036322 229 EECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKG-NI-YAPDALFGWAVALQ 306 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~-n~-~ap~AL~NWGlALq 306 (360)
++|.+.+.+|-+-++. +...|....+++|-|.++...|.-.+|...|.+|++-++. .+ ++ ....++++.|..+.
T Consensus 43 ~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~lg~~~~ 118 (203)
T 3gw4_A 43 DEARASFQALQQQAQK-SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS---LPEDPLAASANAYEVATVAL 118 (203)
T ss_dssp HHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---cCccHHHHHHHHHHHHHHHH
Confidence 3444444444433322 1245677888999999988899988999999999988862 22 11 33578888888877
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHH
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLYQ 331 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~kye 331 (360)
.+-. ..++.+.+++|...++
T Consensus 119 ~~g~-----~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 119 HFGD-----LAGARQEYEKSLVYAQ 138 (203)
T ss_dssp HHTC-----HHHHHHHHHHHHHHHH
T ss_pred HhCC-----HHHHHHHHHHHHHHHH
Confidence 6543 3466666666665543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.073 Score=51.20 Aligned_cols=80 Identities=13% Similarity=-0.029 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHh-hhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 229 EECEELLVKAGRKYRLAL-SIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al-~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
++|+.++..|-.-|..++ .-.|+-...|+|-|.++..-|.-.+|..+|.+|.+=++.++..--+.--++++|.+-++.+
T Consensus 346 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 346 EEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 567777777777777776 3356667789999999999999999999999999999877663222234777888877665
Q ss_pred h
Q 036322 308 R 308 (360)
Q Consensus 308 r 308 (360)
+
T Consensus 426 ~ 426 (429)
T 3qwp_A 426 I 426 (429)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.078 Score=40.71 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccC
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEG 195 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~ 195 (360)
.++.++|.+|++++|.+..|+..+|+.+...|+-+.-+.. ++.++...
T Consensus 26 ~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~-w~~~l~~~ 73 (93)
T 3bee_A 26 DEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDT-WVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHTCC
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhC
Confidence 3677888999999999999999999999999988865543 45566554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.21 Score=48.48 Aligned_cols=60 Identities=17% Similarity=0.074 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh-CCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHh
Q 036322 229 EECEELLVKAGRKYRLALSI-DGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMML 288 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~-dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~ 288 (360)
++|+.++..|-.-|..++=. .|+-...|+|-|.++..-|.-.+|+.+|.+|.+=++.++.
T Consensus 357 ~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG 417 (433)
T 3qww_A 357 EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHG 417 (433)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC
Confidence 45667777777777776633 4566678999999999999999999999999999987665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.76 E-value=2.9 Score=36.73 Aligned_cols=184 Identities=8% Similarity=-0.054 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCcCChH-----------------HHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhh
Q 036322 146 LHKSARLLSQAIAMQHMSLL-----------------AVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILK 208 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~-----------------Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~ 208 (360)
..+|.+.|.+++...|.... |+.++|++|...|....-+. -+..++.-......+....+..
T Consensus 20 y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~ 98 (434)
T 4b4t_Q 20 YNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLRE-FIPHSTEYMMQFAKSKTVKVLK 98 (434)
T ss_dssp HHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHTHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHccchHHHHHHH
Confidence 45677888899998887654 68899999998887754221 1222221110000111111111
Q ss_pred -hhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHH
Q 036322 209 -GLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMM 287 (360)
Q Consensus 209 -~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl 287 (360)
-++. +.. ..+.-+++..++..+...+.. ....+...+++.+=|..+...|.-.+|..++.++........
T Consensus 99 ~~l~~-~~~-------~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 99 TLIEK-FEQ-------VPDSLDDQIFVCEKSIEFAKR-EKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHH-HCS-------CCSCHHHHHHHHHHHHHHHHH-SSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHH-HHh-------CCCCHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 1100 000 001124444444444433322 223445567788888887777776677777776665443211
Q ss_pred hccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccC---CCchHHHHHHHhhhhh
Q 036322 288 LKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMN---SDNLQVREALSSCMSE 353 (360)
Q Consensus 288 ~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLd---pd~~qa~~Al~~c~~e 353 (360)
. +....+++++=|..+...- -+.+|...|++|+.+. |+.+.....+..|...
T Consensus 170 ~--~~~~~~~~~~~~~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 224 (434)
T 4b4t_Q 170 D--KPSLVDVHLLESKVYHKLR------------NLAKSKASLTAARTAANSIYCPTQTVAELDLMSGI 224 (434)
T ss_dssp C--STHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred c--chhHHHHHHHHHHHHHHhC------------cHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Confidence 1 1223456666555543322 2445556666665553 3334444445555443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=93.57 E-value=1.3 Score=34.89 Aligned_cols=95 Identities=11% Similarity=-0.013 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcC
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLR 312 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr 312 (360)
.-+.+|.+-|..|.+.. +..|. -|.....-..... |++=|+.+...++ |.|.++.|..+..---+
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~-------A~~~~~~Aa~~g~---~~a~~~Lg~~y~~G~g~- 73 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQK-------LFQYLSKACELNS---GNGCRFLGDFYENGKYV- 73 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHH-------HHHHHHHHHHTTC---HHHHHHHHHHHHHCSSS-
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHH-------HHHHHHHHHcCCC---HHHHHHHHHHHHcCCCC-
Confidence 44567777888887765 66666 4444433322222 5555555555444 89999999998753322
Q ss_pred CCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 313 PRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 313 ~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
+.+. ++|+..|++|... +++.+..-|..|-
T Consensus 74 ~~d~-------~~A~~~~~~Aa~~--g~~~a~~~Lg~~y 103 (138)
T 1klx_A 74 KKDL-------RKAAQYYSKACGL--NDQDGCLILGYKQ 103 (138)
T ss_dssp CCCH-------HHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred CccH-------HHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 2333 4455666666554 5666666665554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.03 E-value=0.35 Score=36.59 Aligned_cols=24 Identities=25% Similarity=0.047 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhCCCchhhHHhHHH
Q 036322 238 AGRKYRLALSIDGNDVRALYNWGL 261 (360)
Q Consensus 238 AgrKY~~Al~~dp~d~~ALYNWGl 261 (360)
|-.-|..|+.++|++..++.|.+.
T Consensus 65 A~~~~~~al~l~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 65 ALLLTKKLLELDPEHQRANGNLKY 88 (104)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHhhHHH
Confidence 444677888889999999888873
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.78 E-value=0.33 Score=41.01 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccc---hhcHHHHHHHHHHHHHHHHhcc-CCChhHHHhhHHHHHHHh
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLET---AFDADKIFSAAIDNFDAMMLKG-NIYAPDALFGWAVALQQR 308 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~---a~eAe~L~~aA~dKY~AAl~~~-n~~ap~AL~NWGlALqer 308 (360)
+.|..+-+.|..++..++...++-||.+.+|.-... -..+-.|+++-+.+ . +....+.+|.-|++.--+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-------~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-------SCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHHh
Confidence 455666678888888888888888887777776333 33355555554433 2 213468999999985332
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 309 SRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 309 A~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
.=...|.++.+..|+++|+|.||..
T Consensus 88 ------------g~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 88 ------------KEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp ------------TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ------------hhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2466789999999999999999975
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=5.5 Score=38.09 Aligned_cols=145 Identities=10% Similarity=-0.121 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHH-H-HHHHHHHHHHHHHhccCCCcchHH---HHHHhhhhhhhhcchhHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVR-E-ELKLHFSCKLRRLLLEGDVISVEE---QKRILKGLDYQFMNKDKI 220 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~-G-eLKl~~s~~Lr~lla~~~p~s~~~---~~r~~~~ld~~~~~k~~~ 220 (360)
+.++.+++.+++.++|.+..|...-|.++... | ... +...-+..+|.. +|-.-.. ++-++..+.. ..
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~-~EL~~~~k~L~~-dpkNy~AW~~R~wvl~~l~~-~~----- 176 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV-SEIEYIHGSLLP-DPKNYHTWAYLHWLYSHFST-LG----- 176 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH-HHHHHHHHHTSS-CTTCHHHHHHHHHHHHHHHH-TT-----
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcc-cc-----
Confidence 67899999999999999999999999877755 3 221 111222344433 3433222 3334443321 10
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhh
Q 036322 221 ASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFG 300 (360)
Q Consensus 221 ~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~N 300 (360)
....+++.++...+..+|+.+|.++.|.++=|.+|...+....-..++.++++-++.++.+-+ ....|.++
T Consensus 177 --------~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Y 247 (349)
T 3q7a_A 177 --------RISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNY 247 (349)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred --------ccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 011467788899999999999999999999999998844322346789999999999998644 45777766
Q ss_pred HHHHHHH
Q 036322 301 WAVALQQ 307 (360)
Q Consensus 301 WGlALqe 307 (360)
-+-.|..
T Consensus 248 lr~Ll~~ 254 (349)
T 3q7a_A 248 LRGFLKH 254 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.29 Score=45.69 Aligned_cols=115 Identities=10% Similarity=-0.067 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.++|..++...|... +.+.+|..++..|+...-+. .|+.+....+|. ... + -.-.++.++..
T Consensus 119 ~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~-~l~~a~~~~d~~----~~~-----~----a~~~LG~al~~ 183 (282)
T 4f3v_A 119 ADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVID-QVKSAGKWPDKF----LAG-----A----AGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHH-HHTTGGGCSCHH----HHH-----H----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHH-HHHHhhccCCcc----cHH-----H----HHHHHHHHHHH
Confidence 456777888888899999 99999988777655543222 122211111110 000 0 00122233332
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhC--CC-chhhHHhHHHhhhcccchhcHHHHHHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSID--GN-DVRALYNWGLALFFLETAFDADKIFSAAID 281 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~d--p~-d~~ALYNWGlAL~~~~~a~eAe~L~~aA~d 281 (360)
. ..+.+|-+.|.+|++-. |. ..+|+|+=|++|..-|...+|..+|.++..
T Consensus 184 L-----G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 184 L-----ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp T-----TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred C-----CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 33466667888887544 66 778999999999998886666666655544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=90.03 E-value=8.4 Score=44.38 Aligned_cols=85 Identities=13% Similarity=0.075 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHhhhC--CCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 230 ECEELLVKAGRKYRLALSID--GNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 230 EaEeLL~eAgrKY~~Al~~d--p~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
+|-..|.++...|.+|++.- .+++.++|+-|.|+...|. |++|++-|.++ ..|++|++-|.++.+
T Consensus 1080 ~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~-------~kEAIdsYiKA------dD~say~eVa~~~~~ 1146 (1630)
T 1xi4_A 1080 SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGM-------VKEAIDSYIKA------DDPSSYMEVVQAANT 1146 (1630)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------HHHHHHHHHhc------CChHHHHHHHHHHHH
Confidence 33344556666777777654 6888888888888776554 77888888643 348999998888766
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhhccCCC
Q 036322 308 RSRLRPRNSKEKVKLLQQARRLYQDALHMNSD 339 (360)
Q Consensus 308 rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd 339 (360)
+- -++.|++.|..|...+++
T Consensus 1147 lG------------kyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1147 SG------------NWEELVKYLQMARKKARE 1166 (1630)
T ss_pred cC------------CHHHHHHHHHHHHhhccc
Confidence 54 356666777777766644
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=89.57 E-value=1.8 Score=40.95 Aligned_cols=169 Identities=11% Similarity=-0.011 Sum_probs=87.8
Q ss_pred HHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhh
Q 036322 149 SARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDAC 228 (360)
Q Consensus 149 Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~ 228 (360)
+...|.+.++..|.+..++..+|.+|...|....-+ +-|...+... |...+- +.-..++.+.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL-~~l~~~i~~~-~~~~~l----------------ea~~l~vqi~ 146 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSL-ETCVEGIDND-EAEGTT----------------ELLLLAIEVA 146 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHTSS-CSTTHH----------------HHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHhccC-CCcCcH----------------HHHHHHHHHH
Confidence 456677777776777888889999998877665221 1222233322 200011 1111111111
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCC----chhhHHhHHHh----hhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhh
Q 036322 229 EECEELLVKAGRKYRLALSIDGN----DVRALYNWGLA----LFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFG 300 (360)
Q Consensus 229 eEaEeLL~eAgrKY~~Al~~dp~----d~~ALYNWGlA----L~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~N 300 (360)
-.- -=+..|-+.++...+.+|+ +...+++=.-+ +...+...+|-.+|.+++++| +++..+..|+|
T Consensus 147 L~~-~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~------p~~~~~~lLln 219 (310)
T 3mv2_B 147 LLN-NNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF------PTWKTQLGLLN 219 (310)
T ss_dssp HHT-TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS------CSHHHHHHHHH
T ss_pred HHC-CCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC------CCcccHHHHHH
Confidence 000 0023444455666777884 34455543323 222345666777777766665 22334677777
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhcc---CCCchHHHHHHHhh
Q 036322 301 WAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHM---NSDNLQVREALSSC 350 (360)
Q Consensus 301 WGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrL---dpd~~qa~~Al~~c 350 (360)
+.++-+.-.|++++|++....|=+.=+. +|++++++.-+.-|
T Consensus 220 --------~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l 264 (310)
T 3mv2_B 220 --------LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL 264 (310)
T ss_dssp --------HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred --------HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence 2233333456666766555554332222 69999999444333
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=89.03 E-value=15 Score=35.93 Aligned_cols=99 Identities=8% Similarity=-0.009 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc--ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFF--LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~--~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
+-+.+|-.-|.+|+++||+...|+-.=+++-.. .........+ .+....++++... .....++...+++++.....
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~-~~l~~a~~a~~a~-~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQL-AALNTEIDNIVTL-PELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHH-HHHHHHHHHHHTC-GGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhH-HHHHHHHHHHHhc-ccCCcCHHHHHHHHHHHHhC
Confidence 346788889999999999999888742222221 1111112222 2233444443332 11124677777777766543
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 311 LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 311 lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
+ -+.+|+..+++||.|||+ ..+.
T Consensus 291 --g--------d~d~A~~~l~rAl~Ln~s-~~a~ 313 (372)
T 3ly7_A 291 --G--------KTDESYQAINTGIDLEMS-WLNY 313 (372)
T ss_dssp --T--------CHHHHHHHHHHHHHHCCC-HHHH
T ss_pred --C--------CHHHHHHHHHHHHhcCCC-HHHH
Confidence 2 256778888888999975 4443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=85.45 E-value=2.6 Score=40.46 Aligned_cols=62 Identities=8% Similarity=0.044 Sum_probs=51.6
Q ss_pred HHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchH
Q 036322 280 IDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQ 342 (360)
Q Consensus 280 ~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~q 342 (360)
.++|++++..++...+++||=-|+++...+.+.++ .=.+..++++|+..+++||.|||+..+
T Consensus 137 ~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~g-g~~Al~~l~~A~a~lerAleLDP~~~~ 198 (301)
T 3u64_A 137 EQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPL-GSALPDTVHAAVMMLERACDLWPSYQE 198 (301)
T ss_dssp HHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred hhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCC-ChHHHHhHHHHHHHHHHHHHhCCCccc
Confidence 46788888888888899999999999998887433 245778999999999999999999443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.72 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.38 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.3 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.97 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.96 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.93 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.89 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.86 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.84 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.82 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.79 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.77 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.74 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.73 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.71 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.64 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.53 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.45 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.42 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.32 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.3 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.21 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.18 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.14 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.07 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.06 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.04 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.0 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.78 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.68 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.5 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.42 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.37 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.37 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.24 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.13 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.09 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.06 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.95 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 96.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 96.52 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 96.25 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.25 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 96.06 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.1 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 94.99 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 94.58 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 94.23 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 92.96 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 89.87 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 83.17 |
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.72 E-value=2.5e-17 Score=133.31 Aligned_cols=120 Identities=19% Similarity=0.244 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc---ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFF---LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~---~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
..+.+|.+.|..|++++|++.++|+|||.+|.. ...+.++...|.+|++.|+.++.+. +..++||+|+|.++.+++
T Consensus 11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcc
Confidence 347899999999999999999999999999987 5567788899999999999999974 456999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 310 RLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 310 ~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
++.+. ..+....+..|+..|++||.++|+++.++.+|..|-..+
T Consensus 90 ~~~~~-~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 90 FLTPD-ETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp HHCCC-HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred cchhh-HHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence 98877 677888999999999999999999999999999997554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.38 E-value=5.4e-12 Score=101.55 Aligned_cols=116 Identities=14% Similarity=0.134 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHH
Q 036322 143 EMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 143 d~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~ 222 (360)
-..+.+|.+.|++|++++|.++.++.+||++|+..+..+.
T Consensus 10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~---------------------------------------- 49 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHS---------------------------------------- 49 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSC----------------------------------------
T ss_pred HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhh----------------------------------------
Confidence 3458899999999999999999999999999986543321
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc----ccchhcHHHHHHHHHHHHHHHHhccCCChhHHH
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF----LETAFDADKIFSAAIDNFDAMMLKGNIYAPDAL 298 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~----~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL 298 (360)
+.+....+.+|...|..|++++|+++.|+||+|+++.. .+....+...|..|++-|++++.+-| ..+.++
T Consensus 50 -----~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P-~~~~~~ 123 (145)
T d1zu2a1 50 -----ISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP-DNTHYL 123 (145)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred -----hhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC-CHHHHH
Confidence 11223567789999999999999999999999999987 55677788999999999999999744 446666
Q ss_pred hhHHHH
Q 036322 299 FGWAVA 304 (360)
Q Consensus 299 ~NWGlA 304 (360)
.+-|+.
T Consensus 124 ~~L~~~ 129 (145)
T d1zu2a1 124 KSLEMT 129 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666655
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=7.4e-11 Score=96.80 Aligned_cols=174 Identities=18% Similarity=0.136 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
..|...+.++++++|.++.++.++|++|...|....-+.. ++.+..-. |....... .++.+...
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~-~~~~~~~~--------------~l~~~~~~ 249 (388)
T d1w3ba_ 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA-YLRALSLS-PNHAVVHG--------------NLACVYYE 249 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH-HHHHHHHC-TTCHHHHH--------------HHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHH-HHHhHHHh-hhHHHHHH--------------HHHHHHHH
Confidence 5678889999999999999999999999988877643322 22222221 21111110 11111111
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHH---------------------------HHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKI---------------------------FSAA 279 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L---------------------------~~aA 279 (360)
. .-+.+|...|..|++++|++..++++.|.++...+...+|... +.+|
T Consensus 250 ~-----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 324 (388)
T d1w3ba_ 250 Q-----GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp T-----TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred C-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHH
Confidence 1 2245667788888889999999999888888775554444443 4567
Q ss_pred HHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 280 IDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 280 ~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
++-|+.++.+.| ..+.++++.|.++..+-+ +.+|+..|++||.++|+++.+..-|..|-.++
T Consensus 325 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 325 VRLYRKALEVFP-EFAAAHSNLASVLQQQGK------------LQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHTTSCT-TCHHHHHHHHHHHHTTTC------------CHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 777777777533 458999999998876542 46788999999999999999999888876654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.2e-08 Score=85.13 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhhhCCCchhh--HHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhh
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRA--LYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSR 310 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~A--LYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~ 310 (360)
..+.+|...|..+++++|+..++ +++-|.++...|.- .+|++-|+.++...+ ..+.++++-|..+...-
T Consensus 150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~-------~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g- 220 (323)
T d1fcha_ 150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY-------DKAVDCFTAALSVRP-NDYLLWNKLGATLANGN- 220 (323)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH-------hhhhccccccccccc-ccccchhhhhhcccccc-
Confidence 44556666777777777765443 44444444444443 334444444444322 34666666666655432
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 311 LRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 311 lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
-+.+|+..|+.||.++|+++.+...|..|-..
T Consensus 221 -----------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 252 (323)
T d1fcha_ 221 -----------QSEEAVAAYRRALELQPGYIRSRYNLGISCIN 252 (323)
T ss_dssp -----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred -----------cchhHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 24456666666666677666666555555433
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=3.3e-08 Score=80.74 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+..|...+..+++++|++..++++-|.++...+.-.+ |++-|..+....+ ..+.++++.|..+....
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~-------A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~----- 251 (388)
T d1w3ba_ 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR-------AVAAYLRALSLSP-NHAVVHGNLACVYYEQG----- 251 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTH-------HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHH-------HHHHHHHhHHHhh-hHHHHHHHHHHHHHHCC-----
Confidence 4568888899999999999999999998887655433 4444444444323 34666666666654432
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
-+..|+..|++||.++|+++++...+..|...
T Consensus 252 -------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 283 (388)
T d1w3ba_ 252 -------LIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283 (388)
T ss_dssp -------CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 24556666777777777777766666555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=2.2e-09 Score=85.02 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCC-ChhHHHhhHHHHHHHhhhc
Q 036322 233 ELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNI-YAPDALFGWAVALQQRSRL 311 (360)
Q Consensus 233 eLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~-~ap~AL~NWGlALqerA~l 311 (360)
+-|.+|-+.|+.|+.++|++..++||-|.+|...+...+ +.+|+.=|+.++...+. ..+++||+-|+++..+-.
T Consensus 13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d----~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~- 87 (122)
T d1nzna_ 13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE- 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHH----HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh-
Confidence 457788889999999999999999999999976333222 35667777777664321 224799999999987763
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 312 RPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 312 r~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
++.|+..|+.||.++|++++|+.-+..+...+
T Consensus 88 -----------~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 88 -----------YEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp -----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 57799999999999999999999888776544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=8.9e-09 Score=83.35 Aligned_cols=93 Identities=18% Similarity=0.108 Sum_probs=53.6
Q ss_pred HHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChH
Q 036322 238 AGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSK 317 (360)
Q Consensus 238 AgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ssk 317 (360)
|-..|..||+++|+++.+++|.|+++...|. |.+|++-|+.++.+.+ ..+.++++.|.++....+
T Consensus 56 A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~-------~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~------- 120 (259)
T d1xnfa_ 56 ARNDFSQALAIRPDMPEVFNYLGIYLTQAGN-------FDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGR------- 120 (259)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHhhccCCCCHHHHhhhchHHHHHHH-------HHHhhhhhhHHHHHHh-hhhhhHHHHHHHHHHHhh-------
Confidence 4446666677777777777777766666554 3444445555555433 346667776666654321
Q ss_pred HHHHHHHHHHHHHHHhhccCCCchHHHHHHHhh
Q 036322 318 EKVKLLQQARRLYQDALHMNSDNLQVREALSSC 350 (360)
Q Consensus 318 Ek~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c 350 (360)
+..|+..|+.||+++|+++.+...+.-|
T Consensus 121 -----~~~A~~~~~~al~~~p~~~~~~~~~~~~ 148 (259)
T d1xnfa_ 121 -----DKLAQDDLLAFYQDDPNDPFRSLWLYLA 148 (259)
T ss_dssp -----HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 3456666666666777666654444333
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=5.9e-08 Score=85.30 Aligned_cols=162 Identities=7% Similarity=0.037 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHH-HHHHHHHHHHHHhccCCCcchH---HHHHHhhhhhhhhcchhHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREE-LKLHFSCKLRRLLLEGDVISVE---EQKRILKGLDYQFMNKDKIA 221 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~Ge-LKl~~s~~Lr~lla~~~p~s~~---~~~r~~~~ld~~~~~k~~~~ 221 (360)
..+|.++|.+||+++|.+..|.++.|++|...|. +.. ...-+..++.-. |-... .++.++..+.
T Consensus 59 ~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~e-al~~~~~al~~~-p~~~~a~~~~~~~~~~l~---------- 126 (315)
T d2h6fa1 59 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE-EMNYITAIIEEQ-PKNYQVWHHRRVLVEWLR---------- 126 (315)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT----------
T ss_pred hHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHH-HHHHHHHHHHHH-HhhhhHHHHHhHHHHhhc----------
Confidence 4678899999999999999999999999987765 332 222233444332 32221 1222222111
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhH
Q 036322 222 SLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGW 301 (360)
Q Consensus 222 ~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NW 301 (360)
-+.+|..-|..|++++|+...|++|=|.++..-+. |.+|++-|+.++.+ ++..+.|++|-
T Consensus 127 ------------~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~-------~~~Al~~~~~al~~-~p~n~~a~~~r 186 (315)
T d2h6fa1 127 ------------DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL-------WDNELQYVDQLLKE-DVRNNSVWNQR 186 (315)
T ss_dssp ------------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------CTTHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred ------------cHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHH-CCccHHHHHHH
Confidence 12457778999999999999999999988887544 45567778888886 44568899999
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 302 AVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 302 GlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
|..++.+-.... ...++.|+..|..||.++|+++.+..
T Consensus 187 ~~~l~~~~~~~~------~~~~~~ai~~~~~al~~~P~~~~~~~ 224 (315)
T d2h6fa1 187 YFVISNTTGYND------RAVLEREVQYTLEMIKLVPHNESAWN 224 (315)
T ss_dssp HHHHHHTTCSCS------HHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHccccch------hhhhHHhHHHHHHHHHhCCCchHHHH
Confidence 999887654331 23578899999999999999987754
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=5.4e-09 Score=97.81 Aligned_cols=185 Identities=11% Similarity=-0.028 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchH-------HHH-------HHhhhhh
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVE-------EQK-------RILKGLD 211 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~-------~~~-------r~~~~ld 211 (360)
.-+|++.|.+|++++|+..+|..++|++|+.+|+++.-+.+.|.. + |.-.. -|. ..+++.-
T Consensus 2 ~~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~eaye~~i~~---d--p~~a~~~~~e~~Lw~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 2 SLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVT---D--LEYALDKKVEQDLWNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHHHHHHHHH---C--HHHHHHHTHHHHHHHHHTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHHHHHHHHc---C--hhhHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999998766554421 1 21000 011 1122111
Q ss_pred h--hhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcH-----------------
Q 036322 212 Y--QFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDA----------------- 272 (360)
Q Consensus 212 ~--~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eA----------------- 272 (360)
. ....+.++...+.....++...+..|..+|.+++.++|+...+++|-|++....+...+|
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 156 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLV 156 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHH
Confidence 1 012233445555566677888888888899999999999999999999877662211111
Q ss_pred --------HHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 273 --------DKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 273 --------e~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
..-|.+|+.-|.+|+.+.| ..+.+||+-|+.+..... ..+|+..|.+||.++|+++.|+
T Consensus 157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~~~~------------~~~A~~~y~ral~~~~~~~~a~ 223 (497)
T d1ya0a1 157 HLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGD------------HLTTIFYYCRSIAVKFPFPAAS 223 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTC------------HHHHHHHHHHHHSSSBCCHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhCCCCCHHHH
Confidence 1236788888998888744 568999999999765432 4578999999999999999998
Q ss_pred HHHH
Q 036322 345 EALS 348 (360)
Q Consensus 345 ~Al~ 348 (360)
.-|.
T Consensus 224 ~nL~ 227 (497)
T d1ya0a1 224 TNLQ 227 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=3.8e-08 Score=77.60 Aligned_cols=117 Identities=19% Similarity=0.226 Sum_probs=92.3
Q ss_pred HHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 036322 117 RYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGD 196 (360)
Q Consensus 117 ~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~ 196 (360)
.-+..|..|.++|..+++-++ +.+|+.+|.+|++++|.++.++.++|.+|+..|..
T Consensus 5 ~~l~~a~~l~~~gn~~~~~~~--------y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~---------------- 60 (159)
T d1a17a_ 5 GALKRAEELKTQANDYFKAKD--------YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY---------------- 60 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------------
T ss_pred HHHHHHHHHHHHHHHHHHcCC--------HHHHHHHhhhccccchhhhhhhhhhHHHHHhcccc----------------
Confidence 445778888888888877665 45689999999999999999999999988864333
Q ss_pred CcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHH
Q 036322 197 VISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIF 276 (360)
Q Consensus 197 p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~ 276 (360)
.+|..-|..|++++|++..|++++|.++..-|. |
T Consensus 61 ---------------------------------------~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~-------~ 94 (159)
T d1a17a_ 61 ---------------------------------------GYALGDATRAIELDKKYIKGYYRRAASNMALGK-------F 94 (159)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------H
T ss_pred ---------------------------------------chHHHHHHHHHHHcccchHHHHHHHHHHHHcCC-------H
Confidence 335558999999999999999999999999877 5
Q ss_pred HHHHHHHHHHHhccCCChhHHHhhHHHH
Q 036322 277 SAAIDNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 277 ~aA~dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
.+|++-|+.++.+.+ ..|+++..-+..
T Consensus 95 ~eA~~~~~~a~~~~p-~~~~~~~~l~~~ 121 (159)
T d1a17a_ 95 RAALRDYETVVKVKP-HDKDAKMKYQEC 121 (159)
T ss_dssp HHHHHHHHHHHHHST-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 667777777777644 447777654443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=2e-08 Score=79.25 Aligned_cols=99 Identities=13% Similarity=0.129 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|-..|..|++++|++..+++|+|.++...+.. ..|++-|+.++++ ++..++|++++|.++-.+-.
T Consensus 26 y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-------~~A~~~~~kal~~-~p~~~~a~~~~g~~~~~~g~---- 93 (159)
T d1a17a_ 26 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY-------GYALGDATRAIEL-DKKYIKGYYRRAASNMALGK---- 93 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHhhhccccchhhhhhhhhhHHHHHhcccc-------chHHHHHHHHHHH-cccchHHHHHHHHHHHHcCC----
Confidence 56788899999999999999999999999987774 4556666666665 44568999999999876653
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSE 353 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~e 353 (360)
+..|+..|+.|+.++|+++++...+..|...
T Consensus 94 --------~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~ 124 (159)
T d1a17a_ 94 --------FRAALRDYETVVKVKPHDKDAKMKYQECNKI 124 (159)
T ss_dssp --------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6688999999999999999999998888643
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=2.9e-07 Score=76.65 Aligned_cols=177 Identities=18% Similarity=0.116 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|..+|.+|++.+|.+..|+.++|.+|...|....-+.. +..++.-. |.....+- .++..+.
T Consensus 35 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~-~~~al~~~-p~~~~~~~--------------~la~~~~ 98 (323)
T d1fcha_ 35 LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISA-LRRCLELK-PDNQTALM--------------ALAVSFT 98 (323)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHC-TTCHHHHH--------------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH-HHhhhccc-cccccccc--------------ccccccc
Confidence 57899999999999999999999999999999877754332 22223222 32211111 1122222
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc--------ccchhcHHHHHHHHHHHHHHHHhccC-CChhH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF--------LETAFDADKIFSAAIDNFDAMMLKGN-IYAPD 296 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~--------~~~a~eAe~L~~aA~dKY~AAl~~~n-~~ap~ 296 (360)
.. .-+.+|.+.|..++.++|+....+..-...... ..........+..|++-|..++.+.+ ...|.
T Consensus 99 ~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~ 173 (323)
T d1fcha_ 99 NE-----SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 173 (323)
T ss_dssp HT-----TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred cc-----ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccc
Confidence 11 224667788889999999876654433322222 11123356778899999998887633 23467
Q ss_pred HHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 297 ALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 297 AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
++++.|..+...- -+..|+..|++++.++|+++.+..-+..|-.++.
T Consensus 174 ~~~~l~~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 220 (323)
T d1fcha_ 174 VQCGLGVLFNLSG------------EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN 220 (323)
T ss_dssp HHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHH------------HHhhhhcccccccccccccccchhhhhhcccccc
Confidence 8888887765543 2567899999999999999999988877765543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=6.8e-08 Score=73.79 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=87.1
Q ss_pred HHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch
Q 036322 121 EANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV 200 (360)
Q Consensus 121 ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~ 200 (360)
.+++|..+|..++..|. +.+|+.+|.+||..+|.++.+++++|++|+..|+.
T Consensus 2 ~~~~l~~~g~~~~~~g~--------~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~-------------------- 53 (117)
T d1elwa_ 2 QVNELKEKGNKALSVGN--------IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY-------------------- 53 (117)
T ss_dssp HHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH--------------------
T ss_pred HHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCcchhhhhcccccccccccc--------------------
Confidence 45667777777766664 45799999999999999999999999999854222
Q ss_pred HHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHH
Q 036322 201 EEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAI 280 (360)
Q Consensus 201 ~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~ 280 (360)
.+|.+-|..|++++|++..+++|=|.++..-+. |.+|+
T Consensus 54 -----------------------------------~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~-------~~~A~ 91 (117)
T d1elwa_ 54 -----------------------------------QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR-------FEEAK 91 (117)
T ss_dssp -----------------------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHH
T ss_pred -----------------------------------cccchhhhhHHHhccchhhHHHHHHHHHHHccC-------HHHHH
Confidence 345568889999999999999999998888666 55666
Q ss_pred HHHHHHHhccCCChhHHHhhHHHH
Q 036322 281 DNFDAMMLKGNIYAPDALFGWAVA 304 (360)
Q Consensus 281 dKY~AAl~~~n~~ap~AL~NWGlA 304 (360)
.-|+.++.+ ++..|+++.+.+..
T Consensus 92 ~~~~~a~~~-~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 92 RTYEEGLKH-EANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHTT-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHH
Confidence 667766665 33458888877654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=5e-08 Score=74.54 Aligned_cols=97 Identities=19% Similarity=0.138 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|...|..||.++|++..+++|=|.++..-+. |.+|++-|..++.+.| ..|.+|++-|.++..+-
T Consensus 19 ~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~----- 85 (117)
T d1elwa_ 19 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD-------YQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLN----- 85 (117)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHhcCCcchhhhhccccccccccc-------ccccchhhhhHHHhcc-chhhHHHHHHHHHHHcc-----
Confidence 4678889999999999999999999999988666 4566777777776534 46899999999977665
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhh
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCM 351 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~ 351 (360)
-++.|+..|++|+.++|+++++...+..|-
T Consensus 86 -------~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 86 -------RFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp -------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 467899999999999999999999998874
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=1.4e-07 Score=76.14 Aligned_cols=168 Identities=15% Similarity=-0.020 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|.+.|.+||+++|.++.+++++|.+|...|....-+. .++.++.-. |.....+ -.++.++..
T Consensus 54 ~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~~~-p~~~~a~--------------~~lg~~~~~ 117 (259)
T d1xnfa_ 54 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE-AFDSVLELD-PTYNYAH--------------LNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCTHHH--------------HHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh-hhhHHHHHH-hhhhhhH--------------HHHHHHHHH
Confidence 578999999999999999999999999999998875443 234444332 2211110 112222221
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhc-----------------------------HHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFD-----------------------------ADKIFS 277 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~e-----------------------------Ae~L~~ 277 (360)
. .-+.+|..-|..+++++|++..+.++-++.....+.... ....+.
T Consensus 118 ~-----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 G-----GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLME 192 (259)
T ss_dssp T-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHH
T ss_pred H-----hhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 1 114667788999999999998887766654433110000 011112
Q ss_pred HHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCch-HHHHHHH
Q 036322 278 AAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNL-QVREALS 348 (360)
Q Consensus 278 aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~-qa~~Al~ 348 (360)
.+...+.......+ ..++++++-|..+.... -+.+|+..|+.||.++|++. .-+-|+.
T Consensus 193 ~~~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~a~~ 251 (259)
T d1xnfa_ 193 RLKADATDNTSLAE-HLSETNFYLGKYYLSLG------------DLDSATALFKLAVANNVHNFVEHRYALL 251 (259)
T ss_dssp HHHHHCCSHHHHHH-HHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHTTCCTTCHHHHHHHH
T ss_pred HHHHHHHHhhhcCc-ccHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 22221111111111 23567787777765543 35678999999999999864 3344543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=1.1e-07 Score=78.66 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=100.5
Q ss_pred HHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch
Q 036322 121 EANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV 200 (360)
Q Consensus 121 ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~ 200 (360)
++..|-++|...+..++ +..|.++|.+ +.|.++.+++|+|++|+..|..
T Consensus 4 ~~~~l~~~g~~~~~~~d--------~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~-------------------- 52 (192)
T d1hh8a_ 4 EAISLWNEGVLAADKKD--------WKGALDAFSA---VQDPHSRICFNIGCMYTILKNM-------------------- 52 (192)
T ss_dssp HHHHHHHHHHHHHHTTC--------HHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHHCCC--------HHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCc--------------------
Confidence 44555555555544444 4455667764 4677889999999998864332
Q ss_pred HHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHH
Q 036322 201 EEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAI 280 (360)
Q Consensus 201 ~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~ 280 (360)
.+|-+.|..||++||+...|++|.|++...-+.-.+|.+-|..|+
T Consensus 53 -----------------------------------~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl 97 (192)
T d1hh8a_ 53 -----------------------------------TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL 97 (192)
T ss_dssp -----------------------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------------------------------hhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 345558999999999999999999999988777555555555555
Q ss_pred HHHHH--H---Hhcc---CCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc--hHHHHHHHhh
Q 036322 281 DNFDA--M---MLKG---NIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN--LQVREALSSC 350 (360)
Q Consensus 281 dKY~A--A---l~~~---n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~--~qa~~Al~~c 350 (360)
+-... + ..++ ..+..++++|-|+++..+ .-+..|...|+.|+.++|+. ..+..||...
T Consensus 98 ~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~------------~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~ 165 (192)
T d1hh8a_ 98 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK------------EEWKKAEEQLALATSMKSEPRHSKIDKAMECV 165 (192)
T ss_dssp HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 42110 0 0000 112358888888875544 34677888999999998874 4455566543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.64 E-value=8.2e-08 Score=75.20 Aligned_cols=97 Identities=20% Similarity=0.189 Sum_probs=73.5
Q ss_pred HhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchH
Q 036322 122 ANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVE 201 (360)
Q Consensus 122 a~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~ 201 (360)
|.+|..+|...++.|+ +.+|++.|.+||+++|.++.++.|+|++|+..|..
T Consensus 4 a~~l~~~Gn~~~~~g~--------~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~--------------------- 54 (201)
T d2c2la1 4 AQELKEQGNRLFVGRK--------YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP--------------------- 54 (201)
T ss_dssp HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhh---------------------
Confidence 4556666666666665 45789999999999999999999999999865432
Q ss_pred HHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHH
Q 036322 202 EQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAID 281 (360)
Q Consensus 202 ~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~d 281 (360)
..|..-|..|++++|+..+|+||=|.++..-+.-.+|...|..|++
T Consensus 55 ----------------------------------~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 55 ----------------------------------EQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp ----------------------------------HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------------------------hhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455578888888898888888888888877775555555555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.53 E-value=6.9e-07 Score=76.36 Aligned_cols=181 Identities=7% Similarity=-0.074 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHH-HHHHHHhccCCCcchHHHHHHhhhhhhhhcchh
Q 036322 140 ERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFS-CKLRRLLLEGDVISVEEQKRILKGLDYQFMNKD 218 (360)
Q Consensus 140 ~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s-~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~ 218 (360)
......+.++..+|.+++..+|.++.+..+.|.++...|....... ..+..++.-. |.....+.. ..
T Consensus 83 ~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~-~~---------- 150 (334)
T d1dcea1 83 EESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDY-RR---------- 150 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHH-HH----------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhh-HH----------
Confidence 3345567789999999999999999999999988776543211111 1122233222 322111110 00
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchh-------cHH------------------
Q 036322 219 KIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAF-------DAD------------------ 273 (360)
Q Consensus 219 ~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~-------eAe------------------ 273 (360)
..+-.....+..|-..|..+++++|++..|++|.|.++...+.-. .+.
T Consensus 151 -------~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 223 (334)
T d1dcea1 151 -------FVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 223 (334)
T ss_dssp -------HHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred -------HHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcc
Confidence 111111122455677889999999999999999999987711110 011
Q ss_pred --------------------------------HHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHH
Q 036322 274 --------------------------------KIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVK 321 (360)
Q Consensus 274 --------------------------------~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~ 321 (360)
.-+.+|++.|..++.. +++.+.++++-|.++...-
T Consensus 224 ~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~------------ 290 (334)
T d1dcea1 224 NDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLL------------ 290 (334)
T ss_dssp SCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTGG------------
T ss_pred hhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHCC------------
Confidence 2233344444433332 2234566666666643222
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHHHhhhh
Q 036322 322 LLQQARRLYQDALHMNSDNLQVREALSSCMS 352 (360)
Q Consensus 322 Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~ 352 (360)
-.+.|+..|+.|+.+||+++....-|..|..
T Consensus 291 ~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 291 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 3567999999999999999999999888754
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=3e-07 Score=71.12 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+.|..||+++|+++.+++|.|.++...+. |.+|++-|+.++.+.+ ..+.++++.|-++-.++.
T Consensus 20 y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~-------~~~A~~~~~~al~l~~-~~~~~~~~~a~~~~~lg~---- 87 (128)
T d1elra_ 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD-------YNKCRELCEKAIEVGR-ENREDYRQIAKAYARIGN---- 87 (128)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCc-------hHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHHH----
Confidence 4678889999999999999999999999998777 4555555555555422 235777777777766665
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
.-++...+..|+..|+.++.++|+ ++++..+..|...|
T Consensus 88 -~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~l 125 (128)
T d1elra_ 88 -SYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL 125 (128)
T ss_dssp -HHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence 346667899999999999999885 67888888876544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1.7e-06 Score=75.85 Aligned_cols=136 Identities=10% Similarity=-0.017 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHH---HHHHhhhhhhhhcchhHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEE---QKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~---~~r~~~~ld~~~~~k~~~~~ 222 (360)
+.+|++.|.++++++|.+..+..+.|.++...|+.+..+. -+..++.-. |..... ++.++..+
T Consensus 94 ~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~-~~~kal~~d-p~n~~a~~~~~~~~~~~------------ 159 (315)
T d2h6fa1 94 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE-FIADILNQD-AKNYHAWQHRQWVIQEF------------ 159 (315)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH-HHHHHHHHC-TTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHH-HHhhhhhhh-hcchHHHHHHHHHHHHH------------
Confidence 5678999999999999999999999999998888765433 233444322 322211 22222222
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHH
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWA 302 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWG 302 (360)
..+.+|-.-|..||+++|++..|++|=|.++...+.-.++ ..+.+|++-|..++.+.| ..+.++++.|
T Consensus 160 ----------~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~-~~~~~ai~~~~~al~~~P-~~~~~~~~l~ 227 (315)
T d2h6fa1 160 ----------KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR-AVLEREVQYTLEMIKLVP-HNESAWNYLK 227 (315)
T ss_dssp ----------TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH-HHHHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred ----------HhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh-hhhHHhHHHHHHHHHhCC-CchHHHHHHH
Confidence 1235567789999999999999999999998875543333 357889999999999755 4589999999
Q ss_pred HHHHH
Q 036322 303 VALQQ 307 (360)
Q Consensus 303 lALqe 307 (360)
..|..
T Consensus 228 ~ll~~ 232 (315)
T d2h6fa1 228 GILQD 232 (315)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 88764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=8.2e-07 Score=68.60 Aligned_cols=113 Identities=11% Similarity=0.172 Sum_probs=89.2
Q ss_pred HHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcch
Q 036322 121 EANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISV 200 (360)
Q Consensus 121 ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~ 200 (360)
+|......|...+..++ +.+|+++|.+||+++|.++.++.|+|++|...|+.
T Consensus 3 ~a~~~k~~G~~~~~~~~--------y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~-------------------- 54 (128)
T d1elra_ 3 QALKEKELGNDAYKKKD--------FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY-------------------- 54 (128)
T ss_dssp HHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH--------------------
T ss_pred HHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCch--------------------
Confidence 45556666666665554 57899999999999999999999999999865433
Q ss_pred HHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHH
Q 036322 201 EEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAI 280 (360)
Q Consensus 201 ~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~ 280 (360)
.+|.+-|..||+++|+...++++.|.++..-|....+-..|.+|+
T Consensus 55 -----------------------------------~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~ 99 (128)
T d1elra_ 55 -----------------------------------NKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAI 99 (128)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 334457888999999999999999998888777778888899999
Q ss_pred HHHHHHHhccCCChhHHH
Q 036322 281 DNFDAMMLKGNIYAPDAL 298 (360)
Q Consensus 281 dKY~AAl~~~n~~ap~AL 298 (360)
+-|..++...+ .|+++
T Consensus 100 ~~~~kal~~~~--~~~~~ 115 (128)
T d1elra_ 100 HFYNKSLAEHR--TPDVL 115 (128)
T ss_dssp HHHHHHHHHCC--CHHHH
T ss_pred HHHHHHHhcCC--CHHHH
Confidence 99988777533 25554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.32 E-value=1.6e-06 Score=68.94 Aligned_cols=91 Identities=13% Similarity=0.160 Sum_probs=75.0
Q ss_pred HhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHH
Q 036322 245 ALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQ 324 (360)
Q Consensus 245 Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~ 324 (360)
.+.++|....+++|=|++...-+. |.+|+.-|..++.+.+ ..+.||++-|.++..+-. ++
T Consensus 69 ~~~~~~~~~~~~~nla~~~~~~~~-------~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~------------~~ 128 (169)
T d1ihga1 69 GAKLQPVALSCVLNIGACKLKMSD-------WQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKE------------YD 128 (169)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTC------------HH
T ss_pred HHHhChhhHHHHHHHHHHHHhhcc-------cchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccC------------HH
Confidence 345678888888888877766554 6889999999998754 569999999999976653 67
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 325 QARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 325 qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
.|+..|+.||.++|+++.+...|..|...+.
T Consensus 129 ~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 129 QALADLKKAQEIAPEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999976654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=8.6e-07 Score=69.24 Aligned_cols=88 Identities=13% Similarity=0.033 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|.+.|..||+++|+++.+++|=|.++..-+. |.+|++-|+.++.+.| ..+++|++-|.++..+-+
T Consensus 20 ~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~-------~~~Ai~~~~~al~l~p-~~~~a~~~lg~~~~~l~~---- 87 (201)
T d2c2la1 20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-------PEQALADCRRALELDG-QSVKAHFFLGQCQLEMES---- 87 (201)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhh-------hhhhhHHHHHHHHhCC-CcHHHHHHHHHHHHHCCC----
Confidence 4778889999999999999999999999887665 7888888888888744 458999999999877753
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCchH
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNLQ 342 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~q 342 (360)
+..|+..|+.|+.++|+++.
T Consensus 88 --------~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 88 --------YDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTC
T ss_pred --------HHHHHHHHHHHHHhCcccHH
Confidence 66778888888888886543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.21 E-value=2.5e-05 Score=66.46 Aligned_cols=147 Identities=12% Similarity=-0.019 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVD 226 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~ 226 (360)
.+|..+|.++|+++|++..|..+.+..+...+.+. .+
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~--------------~~----------------------------- 82 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEK--------------SP----------------------------- 82 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTS--------------CH-----------------------------
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhc--------------ch-----------------------------
Confidence 36889999999999999988877765544321110 00
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 227 ACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 227 ~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
......+.+|-.-|..+++.+|.++.++++=|.++..-+... +.+|+.-|..++..-+.+.+..++..|.++.
T Consensus 83 --~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~-----~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~ 155 (334)
T d1dcea1 83 --EESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN-----WARELELCARFLEADERNFHCWDYRRFVAAQ 155 (334)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC-----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc-----HHHHHHHHHHHHhhCchhhhhhhhHHHHHHH
Confidence 011233455566788888888888888888887777633211 3455666666666533332333456666654
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 307 QRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 307 erA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
..- ..+.|...|+.+|.++|++..+..-+..|...+.
T Consensus 156 ~~~------------~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 156 AAV------------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192 (334)
T ss_dssp TCC------------CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred hcc------------ccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 422 3456788888888888888888877776655543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.18 E-value=2.7e-06 Score=64.39 Aligned_cols=78 Identities=18% Similarity=-0.030 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|..+|++|+..+|.++.++.++|.+|...|+.
T Consensus 32 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~--------------------------------------------- 66 (112)
T d1hxia_ 32 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD--------------------------------------------- 66 (112)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------------------------------
T ss_pred hHHHHHHHhhhcccccccchhhhhhhhhhhhhhhH---------------------------------------------
Confidence 67799999999999999999999999887753222
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSA 278 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~a 278 (360)
.+|-.-|..|++++|++..++++.|..+...|.-.+|.+.|++
T Consensus 67 ----------~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 67 ----------GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 109 (112)
T ss_dssp ----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445578899999999999999999999987665555544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.14 E-value=1.4e-05 Score=63.26 Aligned_cols=102 Identities=22% Similarity=0.227 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhhhCCCch----------------hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHH
Q 036322 234 LLVKAGRKYRLALSIDGNDV----------------RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDA 297 (360)
Q Consensus 234 LL~eAgrKY~~Al~~dp~d~----------------~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~A 297 (360)
-+.+|...|..|+++.|... ..++|=|+++...+. |.+|++=|+.++.+.| ..+.|
T Consensus 32 ~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~-------~~~Al~~~~~al~~~p-~~~ka 103 (153)
T d2fbna1 32 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD-------YPKAIDHASKVLKIDK-NNVKA 103 (153)
T ss_dssp CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHST-TCHHH
T ss_pred CHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc-------cchhhhhhhccccccc-hhhhh
Confidence 45678889999998766433 355666666555554 5667777777777655 34899
Q ss_pred HhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 298 LFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 298 L~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
|++-|.++..+-. +.+|+..|+.|++++|+++.+..-+..|...|+
T Consensus 104 ~~~~g~~~~~lg~------------~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 104 LYKLGVANMYFGF------------LEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 149 (153)
T ss_dssp HHHHHHHHHHHTC------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999877663 678999999999999999999999999987664
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.07 E-value=1.7e-05 Score=63.21 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhhCCC---------------chhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHh
Q 036322 235 LVKAGRKYRLALSIDGN---------------DVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALF 299 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~---------------d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~ 299 (360)
+.+|.+.|..||.+.|. ....|.|.|.++..-+. |.+|++=|+.++.+.| ..+.+|+
T Consensus 31 ~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~-------~~~Ai~~~~~al~l~p-~~~~a~~ 102 (168)
T d1kt1a1 31 YVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE-------YTKAVECCDKALGLDS-ANEKGLY 102 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhh-------cccchhhhhhhhhccc-chHHHHH
Confidence 56678888888866443 23457788887766554 5677777777777644 5689999
Q ss_pred hHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhcc
Q 036322 300 GWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSELN 355 (360)
Q Consensus 300 NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el~ 355 (360)
+-|.++..+-. +..|+..|+.||.++|+++.+...|..|...+.
T Consensus 103 ~~~~~~~~l~~------------~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 103 RRGEAQLLMNE------------FESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHHHHTTC------------HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999777653 578899999999999999999999999976543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.06 E-value=6.4e-05 Score=59.31 Aligned_cols=144 Identities=17% Similarity=0.127 Sum_probs=90.5
Q ss_pred chHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 036322 111 DDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRR 190 (360)
Q Consensus 111 d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~ 190 (360)
.+.-.+.-+++|..+-.+|...++.++ +.+|+.+|.+||.+-|.......... . . ....|..
T Consensus 6 ~~~~~~e~~~~a~~~~~~G~~~f~~~~--------y~~A~~~Y~~al~~~~~~~~~~~~~~---~-~------~~~~~~~ 67 (153)
T d2fbna1 6 YDYTDEEKVQSAFDIKEEGNEFFKKNE--------INEAIVKYKEALDFFIHTEEWDDQIL---L-D------KKKNIEI 67 (153)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTTTTCTTCCCHHH---H-H------HHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCcchhhhhhHHH---H-H------hhhhHHH
Confidence 344455666777777777777766553 55678889999887554432211111 0 0 0000000
Q ss_pred HhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchh
Q 036322 191 LLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAF 270 (360)
Q Consensus 191 lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~ 270 (360)
. --.+++..+.... -+.+|.+-|..||+++|++.+|||+=|.++..-|.
T Consensus 68 ---~---------------------~~~Nla~~~~~l~-----~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~-- 116 (153)
T d2fbna1 68 ---S---------------------CNLNLATCYNKNK-----DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF-- 116 (153)
T ss_dssp ---H---------------------HHHHHHHHHHHTT-----CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--
T ss_pred ---H---------------------HHhhHHHHHHHhc-----ccchhhhhhhccccccchhhhhhHHhHHHHHHcCC--
Confidence 0 0011222222221 24567778999999999999999999999988666
Q ss_pred cHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 271 DADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 271 eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
|.+|+.-|+.++.+.| ..+++..+++.+.+.+.
T Consensus 117 -----~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 117 -----LEEAKENLYKAASLNP-NNLDIRNSYELCVNKLK 149 (153)
T ss_dssp -----HHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHH
Confidence 5677778888888744 56899999998876654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=2e-05 Score=61.70 Aligned_cols=105 Identities=9% Similarity=-0.060 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHH
Q 036322 143 EMILHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIAS 222 (360)
Q Consensus 143 d~lL~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~ 222 (360)
..-|.+|.+.|.+|+.++|.++.+.+|+|++|+..+...
T Consensus 12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~----------------------------------------- 50 (122)
T d1nzna_ 12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYND----------------------------------------- 50 (122)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHH-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchH-----------------------------------------
Confidence 345778889999999999999999999998887311100
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhCCCc--hhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhh
Q 036322 223 LLVDACEECEELLVKAGRKYRLALSIDGND--VRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFG 300 (360)
Q Consensus 223 aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d--~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~N 300 (360)
=+.+|.+-|..+++.+|+. .++|||=|++....|. |.+|++=|+.++.+-| ..++|+..
T Consensus 51 -----------d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~-------~~~A~~~~~~aL~~~P-~~~~A~~l 111 (122)
T d1nzna_ 51 -----------DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-------YEKALKYVRGLLQTEP-QNNQAKEL 111 (122)
T ss_dssp -----------HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred -----------HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 0134555667777777655 3478888877766666 4555566666666533 44667666
Q ss_pred HHHHHHH
Q 036322 301 WAVALQQ 307 (360)
Q Consensus 301 WGlALqe 307 (360)
-+.-.+.
T Consensus 112 ~~~I~~~ 118 (122)
T d1nzna_ 112 ERLIDKA 118 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=3e-05 Score=62.25 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhhhCCCch---------------hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHh
Q 036322 235 LVKAGRKYRLALSIDGNDV---------------RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALF 299 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~---------------~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~ 299 (360)
+.+|...|..||++.|... .++.|=|.+....+. |.+|++=|+.++.+.| ..+.||+
T Consensus 29 ~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~-------~~~A~~~~~~al~~~p-~~~~a~~ 100 (170)
T d1p5qa1 29 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA-------FSAAIESCNKALELDS-NNEKGLS 100 (170)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhh-------cccccchhhhhhhccc-cchhhhH
Confidence 4567788999998877554 344454444444555 5677777777777644 5699999
Q ss_pred hHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHhhhhhc
Q 036322 300 GWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 300 NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c~~el 354 (360)
+-|.++..+-. +.+|+..|+.|+.++|+++.+..-|..|.-.+
T Consensus 101 ~~g~~~~~~g~------------~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 101 RRGEAHLAVND------------FELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHTTC------------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhh------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999887763 68899999999999999999999999886544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.78 E-value=0.0001 Score=55.38 Aligned_cols=80 Identities=15% Similarity=0.019 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+.+|...|..|+..+|+.+.++++.|.++...+. +.+|+.-|+.++.+.| ..+++++++|..+.....
T Consensus 32 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-------~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~---- 99 (112)
T d1hxia_ 32 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK-------DGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN---- 99 (112)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHhhhcccccccchhhhhhhhhhhhhhh-------HHHhhccccccccccc-ccccchHHHHHHHHHCCC----
Confidence 5678889999999999999999999999977666 4566666666777644 469999999999877653
Q ss_pred ChHHHHHHHHHHHHHHHHhh
Q 036322 315 NSKEKVKLLQQARRLYQDAL 334 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~AL 334 (360)
+.+|+..|+++|
T Consensus 100 --------~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 --------ANAALASLRAWL 111 (112)
T ss_dssp --------HHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHh
Confidence 455666666554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=9.4e-05 Score=54.56 Aligned_cols=88 Identities=14% Similarity=0.156 Sum_probs=63.8
Q ss_pred hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHh
Q 036322 254 RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDA 333 (360)
Q Consensus 254 ~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~A 333 (360)
+..|+=|.+...-|.-..|...|++|++.+..-.. ..+...++|+|.|.++..+-. ++.|+..|++|
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~-~~~~~~~~l~~Lg~~~~~~g~------------~~~A~~~y~~a 72 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGD------------LDKALLLTKKL 72 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTC------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc-cCccHHHHHHHHhhHHHhcCC------------hHHHHHHHHHH
Confidence 45677788887777766666666666655542211 233457899999999766553 67899999999
Q ss_pred hccCCCchHHHHHHHhhhhhc
Q 036322 334 LHMNSDNLQVREALSSCMSEL 354 (360)
Q Consensus 334 LrLdpd~~qa~~Al~~c~~el 354 (360)
|.++|+++.|..-|.-+-..|
T Consensus 73 L~l~P~~~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 73 LELDPEHQRANGNLKYFEYIM 93 (95)
T ss_dssp HHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhCcCCHHHHHHHHHHHHHh
Confidence 999999999998876655443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.61 E-value=0.0013 Score=51.55 Aligned_cols=67 Identities=16% Similarity=0.067 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
+.+|..-|..||+++|+..+|+|+=|.++...+. |.+|++-|..++.+-+ ..+++...-+...+.+.
T Consensus 93 ~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~-------~~~A~~~~~~al~l~p-~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 93 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE-------YDQALADLKKAQEIAP-EDKAIQAELLKVKQKIK 159 (169)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccC-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHH
Confidence 4667779999999999999999999999988665 6778888888888643 45788777776655443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.00044 Score=56.38 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCC
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPR 314 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ 314 (360)
+..|.+.|.. +.|.+.+++||-|.+....|. |.+|++-|++++.+ +++.+.|++|.|+++..+.+
T Consensus 21 ~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~-------~~~A~~~~~kAl~l-dp~~~~a~~~~g~~~~~~g~---- 85 (192)
T d1hh8a_ 21 WKGALDAFSA---VQDPHSRICFNIGCMYTILKN-------MTEAEKAFTRSINR-DKHLAVAYFQRGMLYYQTEK---- 85 (192)
T ss_dssp HHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCC-------chhHHHHHHHHHHH-hhhhhhhHHHHHHHHHhhcc----
Confidence 5566667764 466778999999999988776 56677777777776 34569999999999877664
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCch
Q 036322 315 NSKEKVKLLQQARRLYQDALHMNSDNL 341 (360)
Q Consensus 315 sskEk~~Ll~qA~~kye~ALrLdpd~~ 341 (360)
..+|+..|++||...|.++
T Consensus 86 --------~~~A~~~~~kAl~~~~~n~ 104 (192)
T d1hh8a_ 86 --------YDLAIKDLKEALIQLRGNQ 104 (192)
T ss_dssp --------HHHHHHHHHHHHHTTTTCS
T ss_pred --------HHHHHHHHHHHHHhCccCc
Confidence 4566777777776666543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.42 E-value=0.0018 Score=54.56 Aligned_cols=189 Identities=14% Similarity=0.004 Sum_probs=93.5
Q ss_pred HHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHc------CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Q 036322 121 EANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAM------QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLE 194 (360)
Q Consensus 121 ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~------~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~ 194 (360)
+|.++..+|=.+-+...+- .+|+.+|.+|+++ .|+-..++.|+|++|...|....-+.. ++.++.
T Consensus 35 ~Aa~~y~~aa~~y~~~~~~-------~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~-~~~a~~- 105 (290)
T d1qqea_ 35 EAADLCVQAATIYRLRKEL-------NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS-LENAIQ- 105 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCT-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHH-
T ss_pred HHHHHHHHHHHHHHHCcCH-------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHH-HHHhhH-
Confidence 4555555554444443333 4455556666555 344567889999999988877654332 111110
Q ss_pred CCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHH---HHHHHHHHHHHHhhhCCC------chhhHHhHHHhhhc
Q 036322 195 GDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEE---LLVKAGRKYRLALSIDGN------DVRALYNWGLALFF 265 (360)
Q Consensus 195 ~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEe---LL~eAgrKY~~Al~~dp~------d~~ALYNWGlAL~~ 265 (360)
+... ...-...+.++...++-++. -+.+|..-|..|+++.+. -..+++|.|.++..
T Consensus 106 -----------~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~ 170 (290)
T d1qqea_ 106 -----------IFTH----RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (290)
T ss_dssp -----------HHHH----TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------Hhhh----cccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Confidence 0000 00111122333333333321 256667777777766332 35668999988888
Q ss_pred ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 036322 266 LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVRE 345 (360)
Q Consensus 266 ~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~ 345 (360)
.|.-.+|-..|.+++..+...- ...+..+..+++=|+..... + -+.+|...|+.++.++|..+..++
T Consensus 171 ~g~y~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~-----~-------d~~~A~~~~~~~~~~~~~~~~sre 237 (290)
T d1qqea_ 171 DGQYIEASDIYSKLIKSSMGNR-LSQWSLKDYFLKKGLCQLAA-----T-------DAVAAARTLQEGQSEDPNFADSRE 237 (290)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCT-TTGGGHHHHHHHHHHHHHHT-----T-------CHHHHHHHHHGGGCC---------
T ss_pred cChHHHHHHHHHHHHHhCccch-hhhhhHHHHHHHHHHHHHHh-----c-------cHHHHHHHHHHHHHhCCCccchHH
Confidence 7775555555555444432100 01112234455555543211 1 246688999999999998887764
Q ss_pred H
Q 036322 346 A 346 (360)
Q Consensus 346 A 346 (360)
.
T Consensus 238 ~ 238 (290)
T d1qqea_ 238 S 238 (290)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.37 E-value=0.00019 Score=63.06 Aligned_cols=125 Identities=9% Similarity=0.026 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
+.+|+..|.++|+.+|.+..+..++|..|+..|+..
T Consensus 12 l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e-------------------------------------------- 47 (264)
T d1zbpa1 12 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFE-------------------------------------------- 47 (264)
T ss_dssp HHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHH--------------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH--------------------------------------------
Confidence 567899999999999999999999998888654433
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHH
Q 036322 226 DACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVAL 305 (360)
Q Consensus 226 ~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlAL 305 (360)
+|-+.|+.+++++|+...+.++.|.++.- .....+++..+.......+ |+....+-+..
T Consensus 48 -----------~A~~~l~~a~~l~P~~~~~~~~l~~ll~a-------~~~~~~a~~~~~~~~~~~~---p~~~~~~l~~a 106 (264)
T d1zbpa1 48 -----------RADEQLMQSIKLFPEYLPGASQLRHLVKA-------AQARKDFAQGAATAKVLGE---NEELTKSLVSF 106 (264)
T ss_dssp -----------HHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------HHHHHHHTTSCCCEECCCS---CHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHh-------ccccHHHHHHhhhhhcccC---chHHHHHHHHH
Confidence 34457888999999999999999877642 2223333333322222222 33333333322
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHH
Q 036322 306 QQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVR 344 (360)
Q Consensus 306 qerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~ 344 (360)
..+. +.+ -.++|...+++|+.+.|+.+...
T Consensus 107 ~~~~--~~g-------d~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 107 NLSM--VSQ-------DYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHHH--HHT-------CHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHH--hCC-------CHHHHHHHHHHHHhcCCCCCccc
Confidence 2222 112 24567888888899999887653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.00057 Score=63.17 Aligned_cols=132 Identities=11% Similarity=-0.026 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLV 225 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~ 225 (360)
...++..|.+++.++|.+..+.+++|.++...|.....+..--+.+..+ ...+++
T Consensus 102 Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------------------------~~~~~~ 156 (497)
T d1ya0a1 102 YTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-------------------------CQHCLV 156 (497)
T ss_dssp HHHHHHHHTC-------------------------------CCHHHHHH-------------------------HHHHHH
T ss_pred HHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-------------------------HHHHHH
Confidence 3445555566667899999999999998887665543222100000000 011222
Q ss_pred HhhHHH--HHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHH
Q 036322 226 DACEEC--EELLVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAV 303 (360)
Q Consensus 226 ~~~eEa--EeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGl 303 (360)
..+.-+ ..-+.+|.+-|.+|++++|++..+++|=|++....+. +.+|+.-|.+++.+.+. -|.|+.|.|.
T Consensus 157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~-------~~~A~~~y~ral~~~~~-~~~a~~nL~~ 228 (497)
T d1ya0a1 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-------HLTTIFYYCRSIAVKFP-FPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC-------HHHHHHHHHHHHSSSBC-CHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhCCCC-CHHHHHHHHH
Confidence 222111 1236778999999999999999999999999877665 35677888888886554 4999999999
Q ss_pred HHHHhhh
Q 036322 304 ALQQRSR 310 (360)
Q Consensus 304 ALqerA~ 310 (360)
.+....+
T Consensus 229 ~~~~~~~ 235 (497)
T d1ya0a1 229 ALSKALE 235 (497)
T ss_dssp HHHHHTT
T ss_pred HHHHhhh
Confidence 9876554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.24 E-value=0.0042 Score=50.91 Aligned_cols=128 Identities=10% Similarity=-0.122 Sum_probs=84.8
Q ss_pred chHHHHHHHHHHhhhhHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHcCcCChHHHhhhhh-hHHHHHHHHHHHHHHHH
Q 036322 111 DDVMFDRYLTEANDLPKHAKECMKSGWDEERAEMILHKSARLLSQAIAMQHMSLLAVDQLGN-TYLVREELKLHFSCKLR 189 (360)
Q Consensus 111 d~~~f~~~v~ea~~Llk~are~~~~~~De~~Ad~lL~~Aa~~~s~Al~~~P~s~~Avgn~GN-alL~~GeLKl~~s~~Lr 189 (360)
|-..|+.+++.|+.+...++- ..|.++|.+|+++.|....+-.+.+- +.-.+.+|....
T Consensus 7 D~~~f~~~~~~g~~~~~~g~~---------------e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~----- 66 (179)
T d2ff4a2 7 DLGRFVAEKTAGVHAAAAGRF---------------EQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDK----- 66 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTCH---------------HHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHH-----
T ss_pred cHHHHHHHHHHHHHHHHCCCH---------------HHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHH-----
Confidence 566799999999888774442 35678899999998887644222211 111111111111
Q ss_pred HHhccCCCcchHHHHHHhhhhhhhhcchhHHHHHHHHhhHHHHHH--HHHHHHHHHHHhhhCCCchhhHHhHHHhhhccc
Q 036322 190 RLLLEGDVISVEEQKRILKGLDYQFMNKDKIASLLVDACEECEEL--LVKAGRKYRLALSIDGNDVRALYNWGLALFFLE 267 (360)
Q Consensus 190 ~lla~~~p~s~~~~~r~~~~ld~~~~~k~~~~~aL~~~~eEaEeL--L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~ 267 (360)
..++...++-..++ +.+|.+-++.+++++|.+-.++++.|.+|...|
T Consensus 67 -------------------------------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~G 115 (179)
T d2ff4a2 67 -------------------------------VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSD 115 (179)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTT
T ss_pred -------------------------------HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 11111222222222 567888899999999999999999999999999
Q ss_pred chhcHHHHHHHHHHHHHHHHhc
Q 036322 268 TAFDADKIFSAAIDNFDAMMLK 289 (360)
Q Consensus 268 ~a~eAe~L~~aA~dKY~AAl~~ 289 (360)
...+|-+.|..+..-+..-+.+
T Consensus 116 r~~eAl~~y~~~~~~L~~eLG~ 137 (179)
T d2ff4a2 116 RQSDALGAYRRVKTTLADDLGI 137 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHhCC
Confidence 9888888888887776655554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.13 E-value=0.0029 Score=49.18 Aligned_cols=93 Identities=18% Similarity=0.056 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhhCCCch------------hhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCC---hhHHHh
Q 036322 235 LVKAGRKYRLALSIDGNDV------------RALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIY---APDALF 299 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~------------~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~---ap~AL~ 299 (360)
+.+|...|..||+++|+.+ .+|+|=|.++...|.-.+|-.-+..|+.-+.......... ...+|+
T Consensus 25 y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~ 104 (156)
T d2hr2a1 25 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVY 104 (156)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHh
Confidence 7889999999999998765 4677888888778886666666666666665444432211 135788
Q ss_pred hHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCC
Q 036322 300 GWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSD 339 (360)
Q Consensus 300 NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd 339 (360)
|-|.++..+.+ +++|+..|++||.+.|+
T Consensus 105 ~~g~~~~~lg~------------~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 105 SRALALDGLGR------------GAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHTTC------------HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH------------HHHHHHHHHHHHHhhHH
Confidence 99999888764 44566666666666443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.0074 Score=47.84 Aligned_cols=67 Identities=22% Similarity=0.188 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
+.+|.+-|..||.++|+..+|+|+=|.++...|. |..|++-|+.++.+.| +.|+++..-+.......
T Consensus 78 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~-------~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 78 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVND-------FELARADFQKVLQLYP-NNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhccccchhhhHHHHHHHHHhhh-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHH
Confidence 5677789999999999999999999999998777 5667777777777633 56888888777755444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.06 E-value=0.0071 Score=47.56 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhh
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRS 309 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA 309 (360)
+.+|..-|..|+.++|+..+|+|+=|.++..-+. |.+|++-|..++.+-| ..+.++..-+.....+.
T Consensus 80 ~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~-------~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 80 YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE-------FESAKGDFEKVLEVNP-QNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhcccchHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHH
Confidence 4567778889999999999999999999988666 5677777777777644 45788777776654444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.95 E-value=0.0091 Score=46.24 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCcCCh------------HHHhhhhhhHHHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSL------------LAVDQLGNTYLVREELKL 182 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~------------~Avgn~GNalL~~GeLKl 182 (360)
+.+|++.|.+||++.|..+ .++.|+|++|...|+...
T Consensus 25 y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~ 73 (156)
T d2hr2a1 25 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDE 73 (156)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccch
Confidence 6679999999999988765 467788888887766654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=96.73 E-value=0.017 Score=45.24 Aligned_cols=31 Identities=16% Similarity=0.026 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 036322 316 SKEKVKLLQQARRLYQDALHMNSDNLQVREAL 347 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al 347 (360)
..++..++++|+...+. +...|+...+...+
T Consensus 267 ~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l 297 (366)
T d1hz4a_ 267 FEPAEIVLEELNENARS-LRLMSDLNRNLLLL 297 (366)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh-cccChHHHHHHHHH
Confidence 34455555555444432 23334433333333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.52 E-value=0.035 Score=46.38 Aligned_cols=93 Identities=14% Similarity=0.038 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhhCCCc------hhhHHhHHHhhh-cccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 235 LVKAGRKYRLALSIDGND------VRALYNWGLALF-FLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d------~~ALYNWGlAL~-~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
+.+|...|..|+++.+.. ..++++=|-.+- ..+.-.+|...|..|++-+... . .+.....++++.|..+..
T Consensus 93 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~-~-~~~~~~~~~~~la~~~~~ 170 (290)
T d1qqea_ 93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-Q-SVALSNKCFIKCADLKAL 170 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc-C-chhhhhhHHHHHHHHHHH
Confidence 445556666666654433 455556555442 2577777888888887766421 1 112234678888887655
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhhccCCCch
Q 036322 308 RSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNL 341 (360)
Q Consensus 308 rA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~ 341 (360)
+- -+..|+..|++++.+.|+++
T Consensus 171 ~g------------~y~~A~~~~~~~~~~~~~~~ 192 (290)
T d1qqea_ 171 DG------------QYIEASDIYSKLIKSSMGNR 192 (290)
T ss_dssp TT------------CHHHHHHHHHHHHHTTSSCT
T ss_pred cC------------hHHHHHHHHHHHHHhCccch
Confidence 43 36677888888888887765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.086 Score=41.14 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCcCCh-----HHHhhhhhhHHHHHHHHHH
Q 036322 147 HKSARLLSQAIAMQHMSL-----LAVDQLGNTYLVREELKLH 183 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~-----~Avgn~GNalL~~GeLKl~ 183 (360)
.+|.++|.+|++..|.+. .|+.++|.+|...|.+..-
T Consensus 29 ~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A 70 (366)
T d1hz4a_ 29 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS 70 (366)
T ss_dssp HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHH
Confidence 356788899999999874 5899999999999987643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.013 Score=42.54 Aligned_cols=67 Identities=10% Similarity=-0.130 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhhC-------CCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHH
Q 036322 235 LVKAGRKYRLALSID-------GNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQ 307 (360)
Q Consensus 235 L~eAgrKY~~Al~~d-------p~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqe 307 (360)
+.+|..-|..|+++. ++..++|+|-|.+....|. +.+|++-|+.++.+- +..|+|++|-+..-+.
T Consensus 21 y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~-------~~~A~~~y~~aL~l~-P~~~~a~~Nl~~~~~~ 92 (95)
T d1tjca_ 21 YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-------LDKALLLTKKLLELD-PEHQRANGNLKYFEYI 92 (95)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCC-------hHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 344555566666554 4557889999998888776 677888888888874 4569999999887666
Q ss_pred hh
Q 036322 308 RS 309 (360)
Q Consensus 308 rA 309 (360)
++
T Consensus 93 l~ 94 (95)
T d1tjca_ 93 MA 94 (95)
T ss_dssp HH
T ss_pred hC
Confidence 65
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.06 E-value=0.32 Score=40.55 Aligned_cols=163 Identities=15% Similarity=0.116 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHc-CcCChHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHhhhhhhhhcchh
Q 036322 140 ERAEMILHKSARLLSQAIAM-QHMSLLAVDQLGNTYLVREELKLHFSCKLRRLLLEGDVISVEEQKRILKGLDYQFMNKD 218 (360)
Q Consensus 140 ~~Ad~lL~~Aa~~~s~Al~~-~P~s~~Avgn~GNalL~~GeLKl~~s~~Lr~lla~~~p~s~~~~~r~~~~ld~~~~~k~ 218 (360)
..+......+..+|..|+.. .|.+......+++.+...|...... .-+..++...+.....-|-.-
T Consensus 74 ~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~-~i~~~~l~~~~~~~~~~w~~~------------ 140 (308)
T d2onda1 74 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH-SIYNRLLAIEDIDPTLVYIQY------------ 140 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTSSSSCTHHHHHHH------------
T ss_pred hhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHhcCChHHHHHHH------------
Confidence 34556677888999999974 8999988888888777666543221 123334443321111111111
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchhhHHhHHHhhhc-ccchhcHHHHHHHHHHHHHHHHhccCCChhHH
Q 036322 219 KIASLLVDACEECEELLVKAGRKYRLALSIDGNDVRALYNWGLALFF-LETAFDADKIFSAAIDNFDAMMLKGNIYAPDA 297 (360)
Q Consensus 219 ~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~-~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~A 297 (360)
+..+... .-+..|-+-|..|+..+|.....+.+|+.-.-. .+....|.++|+.|+++| + ..|..
T Consensus 141 --~~~~~~~-----~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-------p-~~~~~ 205 (308)
T d2onda1 141 --MKFARRA-----EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-------G-DIPEY 205 (308)
T ss_dssp --HHHHHHH-----HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-------T-TCHHH
T ss_pred --HHHHHHc-----CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-------h-hhHHH
Confidence 1111111 112345556777899999999999998875544 566666888888888765 2 23777
Q ss_pred HhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchH
Q 036322 298 LFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQ 342 (360)
Q Consensus 298 L~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~q 342 (360)
+..++.-+... + -+.+|...|+.||...|.+|.
T Consensus 206 w~~y~~~~~~~-----g-------~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 206 VLAYIDYLSHL-----N-------EDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HHHHHHHHHTT-----C-------CHHHHHHHHHHHHHSSSSCGG
T ss_pred HHHHHHHHHHc-----C-------ChHHHHHHHHHHHHhCCCChH
Confidence 77777665422 2 123577788888887776554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.10 E-value=0.04 Score=44.64 Aligned_cols=92 Identities=15% Similarity=0.128 Sum_probs=57.7
Q ss_pred HHHHHHhhhCCC-chhhHHhHHHhhhc-ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCChH
Q 036322 240 RKYRLALSIDGN-DVRALYNWGLALFF-LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRNSK 317 (360)
Q Consensus 240 rKY~~Al~~dp~-d~~ALYNWGlAL~~-~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~ssk 317 (360)
++|.+...-.|. ..+==|.|+++=+. ++.-..+-.|+.+.+ ...+....++||+-|++.-.+-
T Consensus 23 ~q~~~e~~~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~-------~~~p~~~rd~lY~Lav~yyklg-------- 87 (124)
T d2pqrb1 23 QQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY-------KEAESRRRECLYYLTIGCYKLG-------- 87 (124)
T ss_dssp HHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH-------HHCGGGHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHhCCCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHH-------hcCchhHHHHHHHHHHHHHHHh--------
Confidence 355555432333 23344556655554 444444555555443 3333333599999999976443
Q ss_pred HHHHHHHHHHHHHHHhhccCCCchHHHHHHHhh
Q 036322 318 EKVKLLQQARRLYQDALHMNSDNLQVREALSSC 350 (360)
Q Consensus 318 Ek~~Ll~qA~~kye~ALrLdpd~~qa~~Al~~c 350 (360)
=...|..+++.+|.++|++.||+.-...+
T Consensus 88 ----dy~~A~~~~~~~L~ieP~n~qA~~L~~~I 116 (124)
T d2pqrb1 88 ----EYSMAKRYVDTLFEHERNNKQVGALKSMV 116 (124)
T ss_dssp ----CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence 35679999999999999999998765544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.99 E-value=0.79 Score=38.01 Aligned_cols=164 Identities=13% Similarity=-0.039 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHHHHHHHHH---------HHHHHHH----HhccCCCcchHHHHHHhhhhhhh
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLVREELKLH---------FSCKLRR----LLLEGDVISVEEQKRILKGLDYQ 213 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~~GeLKl~---------~s~~Lr~----lla~~~p~s~~~~~r~~~~ld~~ 213 (360)
......|++|+...|-+++...++..-+...|.+... ...+.+. ++..-.|.+..-|-
T Consensus 33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~--------- 103 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF--------- 103 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHH---------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHH---------
Confidence 3445679999999999999988888666555544211 1111111 11111121111111
Q ss_pred hcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhCCCchh-hHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCC
Q 036322 214 FMNKDKIASLLVDACEECEELLVKAGRKYRLALSIDGNDVR-ALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNI 292 (360)
Q Consensus 214 ~~~k~~~~~aL~~~~eEaEeLL~eAgrKY~~Al~~dp~d~~-ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~ 292 (360)
.++. .++...-+..|-.-|..++..+|.++. +...++..+...+.-..|.++|.. ++..++
T Consensus 104 ---------~ya~-~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~-------al~~~~- 165 (308)
T d2onda1 104 ---------AYAD-YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK-------AREDAR- 165 (308)
T ss_dssp ---------HHHH-HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH-------HHTSTT-
T ss_pred ---------HHHH-HHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH-------HHHhCC-
Confidence 0110 111112245566678889999998876 445666655555554556666554 455444
Q ss_pred ChhHHHhhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 036322 293 YAPDALFGWAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDNLQVREALS 348 (360)
Q Consensus 293 ~ap~AL~NWGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~~qa~~Al~ 348 (360)
..+..+..++.-..... ++ ...|...|+.+|..+|+++....+..
T Consensus 166 ~~~~~~~~~a~~e~~~~----~~-------~~~a~~i~e~~l~~~p~~~~~w~~y~ 210 (308)
T d2onda1 166 TRHHVYVTAALMEYYCS----KD-------KSVAFKIFELGLKKYGDIPEYVLAYI 210 (308)
T ss_dssp CCTHHHHHHHHHHHHTS----CC-------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhc----cC-------HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 35788888776432211 11 24567778888888888887666543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=94.58 E-value=0.83 Score=36.34 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCcCChHHHhhhhhhHHH
Q 036322 147 HKSARLLSQAIAMQHMSLLAVDQLGNTYLV 176 (360)
Q Consensus 147 ~~Aa~~~s~Al~~~P~s~~Avgn~GNalL~ 176 (360)
.+|.++|.+|.+. .+..|.++||..|..
T Consensus 19 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 46 (265)
T d1ouva_ 19 TQAKKYFEKACDL--KENSGCFNLGVLYYQ 46 (265)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence 3466677777664 578899999988875
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.23 E-value=0.29 Score=39.50 Aligned_cols=99 Identities=16% Similarity=0.075 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhhhCCCchhhHHh---HHHhhhc---c---------cchhcHHHHHHHHHHHHHHHHhccCCChhHHHhh
Q 036322 236 VKAGRKYRLALSIDGNDVRALYN---WGLALFF---L---------ETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFG 300 (360)
Q Consensus 236 ~eAgrKY~~Al~~dp~d~~ALYN---WGlAL~~---~---------~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~N 300 (360)
.+|...|+.|+.+.|++.-+-++ |...... + +.....-.-|.+|+.=++.++..-+ ....++++
T Consensus 28 e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~ 106 (179)
T d2ff4a2 28 EQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQ 106 (179)
T ss_dssp HHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHH
Confidence 45667788888887766433221 3222211 0 0000001126677777888888644 56899999
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhccCCCc
Q 036322 301 WAVALQQRSRLRPRNSKEKVKLLQQARRLYQDALHMNSDN 340 (360)
Q Consensus 301 WGlALqerA~lr~~sskEk~~Ll~qA~~kye~ALrLdpd~ 340 (360)
.|.+|...-+ ..|+.+.++++.+.+.+-|-++|..
T Consensus 107 l~~al~~~Gr-----~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 107 LITAYYLSDR-----QSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHTTTC-----HHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHhcC-----HHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 9999876643 6799999999999999999999974
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=92.96 E-value=0.13 Score=44.48 Aligned_cols=64 Identities=9% Similarity=-0.177 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhhCCCchhhHHhHHHhhhcccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHH
Q 036322 235 LVKAGRKYRLALSIDGNDVRALYNWGLALFFLETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQ 306 (360)
Q Consensus 235 L~eAgrKY~~Al~~dp~d~~ALYNWGlAL~~~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALq 306 (360)
+.+|...|..+++.+|++.++.++-|..|+..|.-.+ |..-|+.++.+.+ ..+.++++.|.++.
T Consensus 12 l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~-------A~~~l~~a~~l~P-~~~~~~~~l~~ll~ 75 (264)
T d1zbpa1 12 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFER-------ADEQLMQSIKLFP-EYLPGASQLRHLVK 75 (264)
T ss_dssp HHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHH-------HHHHHHHHHHHCG-GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH-------HHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 4677889999999999999999999999999888544 5555555555433 45778888887764
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| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=89.87 E-value=2.8 Score=30.99 Aligned_cols=78 Identities=15% Similarity=0.006 Sum_probs=46.6
Q ss_pred HHHHHHhhhCCCchhhHHhHHHhhhc----ccchhcHHHHHHHHHHHHHHHHhccCCChhHHHhhHHHHHHHhhhcCCCC
Q 036322 240 RKYRLALSIDGNDVRALYNWGLALFF----LETAFDADKIFSAAIDNFDAMMLKGNIYAPDALFGWAVALQQRSRLRPRN 315 (360)
Q Consensus 240 rKY~~Al~~dp~d~~ALYNWGlAL~~----~~~a~eAe~L~~aA~dKY~AAl~~~n~~ap~AL~NWGlALqerA~lr~~s 315 (360)
+-|..|.+ .++..|.|+=|..... +.+...|-++|+.|+ ..++ |.|.++-|..+..--- .+.+
T Consensus 44 ~~~~~aa~--~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-------~~g~---~~a~~~Lg~~y~~G~g-v~~d 110 (133)
T d1klxa_ 44 QYLSKACE--LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC-------GLND---QDGCLILGYKQYAGKG-VVKN 110 (133)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-------HTTC---HHHHHHHHHHHHHTSS-SCCC
T ss_pred HHHhhhhc--ccchhhhhhHHHhhhhccccchhhHHHHHHHhhhh-------ccCc---chHHHHHHHHHHcCCc-cCCC
Confidence 34444433 5789999998876654 444444555555554 4334 8999999998765432 3333
Q ss_pred hHHHHHHHHHHHHHHHHhhccC
Q 036322 316 SKEKVKLLQQARRLYQDALHMN 337 (360)
Q Consensus 316 skEk~~Ll~qA~~kye~ALrLd 337 (360)
.. +|+..|+.|..+.
T Consensus 111 ~~-------~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EK-------QAVKTFEKACRLG 125 (133)
T ss_dssp HH-------HHHHHHHHHHHTT
T ss_pred HH-------HHHHHHHHHHHCC
Confidence 44 4555565555543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.17 E-value=1.3 Score=35.41 Aligned_cols=36 Identities=8% Similarity=-0.061 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCcCCh-HHHhhhhhhHHHHHHHH
Q 036322 146 LHKSARLLSQAIAMQHMSL-LAVDQLGNTYLVREELK 181 (360)
Q Consensus 146 L~~Aa~~~s~Al~~~P~s~-~Avgn~GNalL~~GeLK 181 (360)
+.+++.+|+.++..+|+.. +++|+||.+|...|+..
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~ 90 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYS 90 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHH
Confidence 6788999999999999886 89999998888655443
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