Citrus Sinensis ID: 036338

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYKSCLASYDTKTTHIMPF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEcccccccccEHHcccccEEEEccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHEEcccccHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHcccccccEEEccc
Coil and Loop (DISEMBL)
mvrddlyitvpsffrcpisldvmkspvslctgvtydrASIQRWLdsgnntcpatmqvlqskefvpnrTLQRLIQIWSDSVqhrvdssesatgrpvvlsqdEVKDIIRVAISKNEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLitdghngngsgngngngngngsgnGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYKSCLasydtktthimpf
Flexible Loop (DISEMBL)
mvrddlyitvpsffrcpisldvMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQHRVdssesatgrpvvlsqdevKDIIRVaisknedfsenLTKIVAFakesdenkTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEfiagdadskvkiaerdgllaetvkslsldsdrRLIEASLSclitissskraktKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYKSClasydtktthimpf
Low Complexity Region (SEG)
MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHngngsgngngngngngsgngTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYKSCLASYDTKTTHIMPF
Disordered region (IsUnstruct)
****DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSV***************VLSQDEVKDIIRVAISKNEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLIT**********************GTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYKSCLASYDTK*******
Disordered Region (DISOPRED)
******Y***PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVK**********************FAKESDENKTFLAKFDGLVVMLVEILSNVN**NMLKQVIRVLDLILNKIE**********KRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLD****LIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYKSCLASYDTKTTHIMPF
Disordered Region (DISEMBL)
MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDS**************PVVLSQDEVKDIIRVAISKNEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYKSCLASYDTKTTHIMPF
Disordered Region (DISPRO)
****DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQHRVDS**********LSQDEVKDIIRVAISKNEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYKSCLASYDTKTTHIMPF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYKSCLASYDTKTTHIMPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
Q9FLF4	420	U-box domain-containing p	yes	no	0.943	0.916	0.510	1e-106
Q9LSA6	415	U-box domain-containing p	no	no	0.928	0.913	0.479	5e-95
Q9LXE3	409	U-box domain-containing p	no	no	0.931	0.929	0.482	6e-95
Q84TG3	411	E3 ubiquitin-protein liga	no	no	0.904	0.897	0.258	4e-24
Q9LT79	421	U-box domain-containing p	no	no	0.821	0.795	0.257	1e-23
Q9C8D1	431	U-box domain-containing p	no	no	0.855	0.809	0.239	2e-22
Q9C7R6	729	U-box domain-containing p	no	no	0.561	0.314	0.297	9e-22
Q6EUK7	728	U-box domain-containing p	no	no	0.367	0.206	0.355	2e-21
Q9FHN9	444	U-box domain-containing p	no	no	0.803	0.738	0.269	6e-21
Q9SVC6	435	E3 ubiquitin-protein liga	no	no	0.365	0.342	0.379	3e-20

>sp|Q9FLF4|PUB27_ARATH U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1

 Score =  386 bits (992), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/443 (51%), Positives = 303/443 (68%), Gaps = 58/443 (13%)

Query: 1   MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60
           M +DDL ITVP+FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLD GNNTCPATMQ+LQ+
Sbjct: 1   MRKDDLCITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQN 60

Query: 61  KEFVPNRTLQRLIQIWSDSVQHR--VDSSESATGRPVVLSQDEVKDII-RVAISKNE-DF 116
           K+F+PNRTLQRLI+IWSDSV+ R  V+S+E A       ++DE+ D I RV I K E D 
Sbjct: 61  KDFIPNRTLQRLIEIWSDSVRRRTCVESAELAAP-----TRDEIADAIDRVKIEKEERDD 115

Query: 117 SENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVN-------MLKQVIRVLDL 169
            E L+KIV F +ESD+N+ FLA  D  V +LV++++ V+          ++++ +++L  
Sbjct: 116 REVLSKIVRFGRESDDNRGFLAGKDDFVKLLVDLINQVDFETTSAAKSLVVQEAVKILST 175

Query: 170 ILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIA 229
           I +K+ D++   NLIL   +D L S+++ L +  +V+ +I+   LLEFIA DA+SK+ IA
Sbjct: 176 IRSKVSDRRRFSNLILTNGRDRL-SVIVYLFKTGNVELKIDCAGLLEFIAVDAESKLLIA 234

Query: 230 ERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHN 289
           ERDGL+ E +KS+S DSD  LIE+SLSCLI ISS KR K  L+  KLI ++ KL++    
Sbjct: 235 ERDGLITELMKSISKDSDLSLIESSLSCLIAISSPKRVKLNLLREKLIGDVTKLLS---- 290

Query: 290 GNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEIC-QDAALLNGVVQKML 348
                        + + + +V +TEK L+L+EIL++TK+GR EIC  D   L  VV+K++
Sbjct: 291 -------------DSTSSLSVSVTEKCLKLLEILASTKEGRSEICGGDGECLKTVVKKLM 337

Query: 349 KT-----------------------AQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLK 385
           K                        A EAV+S N +TKILLL+QSNC+PAVR+M  DLLK
Sbjct: 338 KVSTAATEHAVTVLWSVSYLFKEDKALEAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLK 397

Query: 386 IFRVNYKSCLASYDTKTTHIMPF 408
           +F+VN +SCL++YDTKTTHIMPF
Sbjct: 398 VFKVNSRSCLSAYDTKTTHIMPF 420

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9LSA6|PUB29_ARATH U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1

 Score =  348 bits (892), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 213/444 (47%), Positives = 291/444 (65%), Gaps = 65/444 (14%)

Query: 1   MVRDDL--YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVL 58
           M RD+   YITVPSFF+CPISLDVM+SPVSLCTGVTYDRASIQRWLD GNNTCPATMQ+L
Sbjct: 1   MGRDETETYITVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQLL 60

Query: 59  QSKEFVPNRTLQRLIQIWSDSV--QHRVDSS--ESATGRPVVLSQDEVKDIIRVAISKNE 114
           ++K+FVPN TLQRLI IWSDS+  +H  DS      +GR V  +++EV  ++   +S   
Sbjct: 61  KTKDFVPNLTLQRLINIWSDSIGRRHNGDSPVLNPPSGREVP-TKEEVNVLLERLMS--- 116

Query: 115 DFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEIL-SNVNDVNMLKQVIRVLDLILNK 173
              ENL KIV F K+SD N+ FL+K    V MLV+I+ +    + ++   IR+LD I  K
Sbjct: 117 --LENLMKIVRFVKDSDSNREFLSKKMEFVPMLVDIIRTKKTKIELVIMAIRILDSI--K 172

Query: 174 IEDQQHLMNLILKRD-QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERD 232
           + D++ L NL+L  D  DCL ++LL + Q+ +++S+IES+R+L++I+ DA SK+ IAERD
Sbjct: 173 V-DRERLSNLMLANDGGDCLTAILLAI-QRGNLESKIESVRVLDWISFDAKSKLMIAERD 230

Query: 233 GLLAETVKSLSL--DSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNG 290
           G+L E +KS+S+   SD  LIEASLS LITIS SKR ++KLI  K IT++  ++      
Sbjct: 231 GVLTEMMKSISITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLT 290

Query: 291 NGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQD--AALLNGVVQKML 348
           N                  V +TEK+L+L+E LS+ ++GR+EIC D     + GVV+K+L
Sbjct: 291 N------------------VAVTEKSLKLLETLSSKREGRLEICGDDNGRCVEGVVKKLL 332

Query: 349 ------------------------KTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLL 384
                                   KT +E V  SN +TK+L+++QSNC+  VRQM+ DL+
Sbjct: 333 KVSTTATEHAVTILWCLCYVFREDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLI 392

Query: 385 KIFRVNYKSCLASYDTKTTHIMPF 408
           K+ + N  S LA+Y+TKTTHIMPF
Sbjct: 393 KVLKFN-SSALAAYETKTTHIMPF 415

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LXE3|PUB28_ARATH U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=1 SV=1

 Score =  348 bits (892), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 211/437 (48%), Positives = 273/437 (62%), Gaps = 57/437 (13%)

Query: 1   MVRDDLYIT-VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59
           M  DDLYIT VP FF+CPISLDVMKSPVSL TGVTYDR SIQRWLD GNNTCPATMQ+LQ
Sbjct: 1   MRSDDLYITTVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPATMQILQ 60

Query: 60  SKEFVPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNEDFSEN 119
           +KEFVPN TL RLI  WSDS+  R DS    +  P        +D I  AI +    ++ 
Sbjct: 61  NKEFVPNLTLHRLIDHWSDSINRRADSESPESDTP-------TRDEINAAIERFRIENDA 113

Query: 120 LTKIVAFAKESDENKTFLAKFDGLVVMLVEILS---NVNDVNML--KQVIRVLDLILNKI 174
            +KI+ FA+ESDEN+ FLA  D  V MLV+++S   N +D  +L   + +++L +I  KI
Sbjct: 114 RSKILRFARESDENREFLAGKDDFVAMLVDLISDSRNFSDSQLLLVGEAVKILSMIRRKI 173

Query: 175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGL 234
            D++ L NLIL    DCL S  L++K+      +I+   +LEFIA DA+SK+ IA+ +GL
Sbjct: 174 FDRRRLSNLILTNGGDCLTSFFLLIKRGNP-KLKIDCSAVLEFIAVDAESKLIIAKGEGL 232

Query: 235 LAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSG 294
           + E +K +S DSD  LIEA+LS LI I+SSKR K  LI  KL+T+L  L+TD        
Sbjct: 233 VTEIIKLISSDSDSSLIEANLSLLIAIASSKRVKLALIREKLVTKLTSLLTD-------- 284

Query: 295 NGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKT---- 350
                         +V +TEK L+L+E +S+ K+GR EIC D   +  VV K++K     
Sbjct: 285 -----------PTTSVSVTEKCLKLLEAISSCKEGRSEIC-DGVCVETVVNKLMKVSTAA 332

Query: 351 -------------------AQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNY 391
                              AQ+AV   N +TKILLL+QSNC+  VR M  DLLK+F+VN 
Sbjct: 333 TEHAVTVLWSVCYLFKEKKAQDAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKVFKVNS 392

Query: 392 KSCLASYDTKTTHIMPF 408
           +SCL+ Y+TKTTHIMPF
Sbjct: 393 RSCLSVYETKTTHIMPF 409

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 193/417 (46%), Gaps = 48/417 (11%)

Query: 5   DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSG-NNTCPATMQVLQSKEF 63
           D  I +P FF CPISL++MK PV + TG+TYDR SI++WL +G  N+CP T Q +   + 
Sbjct: 7   DEEIEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITDADL 66

Query: 64  VPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNEDFSENLTKI 123
            PN TL+RLIQ W  ++          T RP +  + E++ +IR + S +E+  + L ++
Sbjct: 67  TPNHTLRRLIQSWC-TLNASYGVERIPTPRPPI-CKSEIEKLIRDSASSHENQVKCLKRL 124

Query: 124 VAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNL 183
                E+  NK  L +  G+   L  I+SN ++   L      L+L+ +    +  L NL
Sbjct: 125 RQIVSENATNKRCL-EAAGVPEFLANIVSNDSENGSLTD--EALNLLYHLETSETVLKNL 181

Query: 184 ILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS 243
           +  +  + +   L  + Q+   +SR+ +  LL+ I   AD    +  +  +  E V+ L 
Sbjct: 182 LNNKKDNNIVKSLTKIMQRGMYESRVYATLLLKNILEVADPMQSMTLKPEVFTEVVQILD 241

Query: 244 LDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGN 303
               ++  +A++  L+ I    R + K +   +I+ + +L+ D      S      G   
Sbjct: 242 DRISQKATKAAMHILVNICPWGRNRHKAVEAGVISVIIELLMD-----ESFTSERRG--- 293

Query: 304 GSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSS----- 358
                     E A+ ++++L    +GR E     A +  V +K+L+ +Q A   +     
Sbjct: 294 ---------PEMAMVVLDLLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVLL 344

Query: 359 ------------------NVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYK--SCL 395
                              V+ K+ L++Q +C    ++ + +LLK+    +K   CL
Sbjct: 345 SVGRFCATPALLHEMLQLGVVAKLCLVLQVSCGGKTKEKAKELLKLHARVWKDSPCL 401

E3 ubiquitin-protein ligase that negatively regulates water stress response. May control in coordination with PUB23 a drought signaling pathway by ubiquitinating cytosolic RPN12a. Acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB22 and PUB24.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 182/408 (44%), Gaps = 73/408 (17%)

Query: 5   DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNN-TCPATMQVLQSKEF 63
           DL I +P  FRCPISL++M+ PV++CTG TYDRASI+ W+  GNN TCP T   L     
Sbjct: 9   DLGIQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTL 68

Query: 64  VPNRTLQRLIQIW-----SDSVQHRVDSSESA--TGRPVVLSQDEVKDIIRVAISKNEDF 116
           +PN TL+RLIQ W     S+ V+      + A  T    +LSQ        V++      
Sbjct: 69  IPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTSVRALLSQASAITGTHVSVRSR--- 125

Query: 117 SENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176
           +  L ++  FA++SD+N+  +A  +   +++  + S      ++ + + +L ++L   E 
Sbjct: 126 AAALRRLRGFARDSDKNRVLIAAHNATEILIKILFSETTSSELVSESLALL-VMLPITEP 184

Query: 177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG---DADSKVKIAERDG 233
            Q +         + L  LL       S+++R+ +  L+E ++     AD K  I+  + 
Sbjct: 185 NQFVSISSDPGRVEFLTRLLF----DSSIETRVNAAALIEIVSTGTKSADLKGSISNSES 240

Query: 234 LLAETVKSL-SLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITE------LGKLITD 286
           +    +  L +  S RR ++  +  L  + S K  +     H  IT       + +L  D
Sbjct: 241 VFEGVLDLLRNPISSRRALKIGIKTLFALCSVKSTR-----HIAITAGAPEILIDRLAAD 295

Query: 287 GHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQK 346
               +                     TE+AL  VE+L  T +G     + A  +  +V+ 
Sbjct: 296 FDRCD---------------------TERALATVELLCRTPEGCAAFGEHALTVPLLVKT 334

Query: 347 MLKTA---------------------QEAVSSSNVLTKILLLMQSNCT 373
           +L+ +                     +E  + + V+ ++LL++QS CT
Sbjct: 335 ILRVSDRATEYAAGALLALCTAEERWREEAAGAGVVVQLLLMVQSECT 382

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 190/413 (46%), Gaps = 64/413 (15%)

Query: 4   DDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF 63
           +++ IT+PS F+CPIS ++MK PV + +G+TYDR +I++W +SG  TCP T  VL S E 
Sbjct: 27  EEVEITIPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESGYQTCPVTNTVLTSLEQ 86

Query: 64  VPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIR--VAISKNEDFS---E 118
           +PN T++R+IQ W  S        E      V ++  +V +I     A ++  D++   E
Sbjct: 87  IPNHTIRRMIQGWCGSSLG--GGIERIPTPRVPVTSHQVSEICERLSAATRRGDYAACME 144

Query: 119 NLTKIVAFAKESDENKTFLAKFDGLVVMLV---EILSNVNDVNMLKQVIRVLDLILN-KI 174
            +TK+    KES+ N+  + +    +V+ V       N N   +L++ + VL  +L   +
Sbjct: 145 MVTKMTRLGKESERNRKCVKENGAGLVLCVCFDAFSENANASLLLEETVSVLTWMLPIGL 204

Query: 175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGL 234
           E Q  L            N L+ +L+  +  ++      LLE       +  KI   +G+
Sbjct: 205 EGQSKLTT------TSSFNRLVELLRNGDQ-NAAFLIKELLELNVTHVHALTKI---NGV 254

Query: 235 LAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSG 294
               +KS++ DS    + + +S    I +++   ++ +   L+    +++ D  N     
Sbjct: 255 QEAFMKSINRDST--CVNSLISIHHMILTNQETVSRFLELDLVNITVEMLVDSENS---- 308

Query: 295 NGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQ-- 352
                            + EKAL ++ ++  TK+GR ++ ++  ++  +V+K+LK ++  
Sbjct: 309 -----------------VCEKALTVLNVICETKEGREKVRRNKLVIPILVKKILKISEKK 351

Query: 353 ------------------EAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIF 387
                             E         K+++++Q  C    ++   +LLK+ 
Sbjct: 352 DLVSVMWKVCKSGDGSEVEEALRLGAFKKLVVMLQVGCGEGTKEKVTELLKMM 404

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=2 SV=1

 Score =  104 bits (260), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 131/252 (51%), Gaps = 23/252 (9%)

Query: 5   DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFV 64
           D +ITVP  F CPISLD+M  PV + TG TYDR SI RW++ G+ TCP T Q+L     V
Sbjct: 300 DTFITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIV 359

Query: 65  PNRTLQRLIQIW--SDSVQHRVDSSES-----ATGRPVVLSQDEVKDIIRVAISKNEDFS 117
           PNR L+ LI  W  +  + +  + ++S     A+  P   + +  K  + + I    D S
Sbjct: 360 PNRALKNLIVQWCTASGISYESEFTDSPNESFASALPTKAAVEANKATVSILIKYLADGS 419

Query: 118 ENLTKIVA-----FAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILN 172
           +    + A      AK   EN+ ++A+  G +  L  +L++ N +     V  +L+L + 
Sbjct: 420 QAAQTVAAREIRLLAKTGKENRAYIAE-AGAIPHLCRLLTSENAIAQENSVTAMLNLSIY 478

Query: 173 KIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERD 232
           + +++  +M      + DCL S++ VL    +V+++  +   L  ++   + K +IA   
Sbjct: 479 E-KNKSRIME-----EGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIA--- 529

Query: 233 GLLAETVKSLSL 244
            ++ + V++L+L
Sbjct: 530 -IVDQCVEALAL 540

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6EUK7|PUB04_ORYSJ U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=PUB4 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 83/163 (50%), Gaps = 13/163 (7%)

Query: 4   DDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF 63
           DD   +VP  F CPISLD+M+ PV   TG TYDR SI +W++ G++TCP + Q L     
Sbjct: 291 DDTSFSVPKEFSCPISLDLMRDPVVASTGQTYDRPSIIQWIEEGHSTCPNSGQTLADHRL 350

Query: 64  VPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQ--------DEVKDIIRVAISKNED 115
           VPNR L+ LI  W      + DS ES  G    ++         +  K   R+ +   ED
Sbjct: 351 VPNRALRSLISQWCGVYGLQYDSPESNEGMAECVAASCSSRAAMEANKATARILVRMLED 410

Query: 116 FSENLTKIVA-----FAKESDENKTFLAKFDGLVVMLVEILSN 153
            SEN+  + A      AK   +N+ F+A    + ++   +LSN
Sbjct: 411 GSENVKAVAAKEIRLLAKTGKQNRAFIADLGAIPLLCRLLLSN 453

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FHN9|PUB31_ARATH U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31 PE=2 SV=1

 Score =  102 bits (254), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 183/423 (43%), Gaps = 95/423 (22%)

Query: 10  VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTL 69
           +PS F CPISL+ M+ PV+LCTG TY+R++I +W + G+ TCP TMQ L      PN+TL
Sbjct: 60  IPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNIGHCTCPTTMQELWDDLVTPNKTL 119

Query: 70  QRLIQIW-SDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNEDFSENLTKIVAFAK 128
            +LI  W S         SE   GR +     E+   +R A  K +  + +  K V  A 
Sbjct: 120 HQLIYTWFSQKYVLMKKRSEDVQGRAI-----EILGTLRKAKGKAKVHALSELKQVVMA- 173

Query: 129 ESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRD 188
            +   KT +   +G V ++  +LS      +  + I +             L+NL L  D
Sbjct: 174 HAIAKKTVVD--EGGVFVISSLLSPFTSHAVGSEAIAI-------------LVNLELDSD 218

Query: 189 ------QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSL 242
                 Q    SL++ +    S++++I   RL+           ++ E  G  AE V S 
Sbjct: 219 SKAGLMQPARVSLMVDMLNDGSIETKINCARLIG----------RLVEEKGFRAELVSSH 268

Query: 243 S-------LDSDRRL---IEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNG 292
           S       L  DRR    +  +L+ L ++S  K+ +  L+    + +L  ++        
Sbjct: 269 SLLVGLMRLVKDRRRRNGVSPALTLLKSVSVHKQVRNLLVRIGAVPQLVDVLP------- 321

Query: 293 SGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRM--------------------E 332
                            V   E AL +++ L    +GR+                    E
Sbjct: 322 --------------CLDVECLESALFVLDSLCLESEGRIALKDSVNTIPHTVRLLMKVSE 367

Query: 333 ICQDAALLNGVVQKMLKTAQEAVSSSNV----LTKILLLMQSNCTPAVRQMSADLLKIFR 388
            C + A+   ++  + K A E  SS  V      K+LL++QS C PA++Q SA+LLK+  
Sbjct: 368 KCTNYAI--SILWSVCKLASEECSSLAVEVGLAAKLLLVIQSGCDPALKQRSAELLKLCS 425

Query: 389 VNY 391
           ++Y
Sbjct: 426 LHY 428

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22 PE=1 SV=1

 Score = 99.8 bits (247), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 4/153 (2%)

Query: 5   DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSG-NNTCPATMQVLQSKEF 63
           D  I +PSFF CPISLD+MK PV + TG+TYDR SI++WL SG  N+CP T QV+   + 
Sbjct: 2   DQEIEIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVITETDL 61

Query: 64  VPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNEDFSENLTKI 123
            PN TL+RLIQ W  ++          T +P +  + E++ +I+ + S + +  + L ++
Sbjct: 62  TPNHTLRRLIQSWC-TLNASYGIERIPTPKPPI-CKSEIEKLIKESSSSHLNQVKCLKRL 119

Query: 124 VAFAKESDENKTFLAKFDGLVVMLVEILSNVND 156
                E+  NK  L   + +   L  I+SN  D
Sbjct: 120 RQIVSENTTNKRCLEAAE-VPEFLANIVSNSVD 151

E3 ubiquitin-protein ligase that negatively regulates water stress response. May control in coordination with PUB23 a drought signaling pathway by ubiquitinating cytosolic RPN12a. Acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB23 and PUB24.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
224093334	414	photoperiod-response-like protein [Popul	0.941	0.927	0.557	1e-123
225431543	412	PREDICTED: U-box domain-containing prote	0.950	0.941	0.530	1e-122
224131194	407	predicted protein [Populus trichocarpa]	0.924	0.926	0.543	1e-117
255552356	412	E3 ubiquitin ligase PUB14, putative [Ric	0.938	0.929	0.560	1e-116
357519821	418	U-box domain-containing protein [Medicag	0.943	0.921	0.530	1e-114
356525586	418	PREDICTED: U-box domain-containing prote	0.941	0.918	0.533	1e-113
356512817	418	PREDICTED: U-box domain-containing prote	0.921	0.899	0.511	1e-109
357464565	419	U-box domain-containing protein [Medicag	0.941	0.916	0.494	1e-106
297797485	419	U-box domain-containing protein [Arabido	0.946	0.921	0.507	1e-105
15237755	420	U-box domain-containing protein 27 [Arab	0.943	0.916	0.510	1e-105

>gi|224093334|ref|XP_002309886.1| photoperiod-response-like protein [Populus trichocarpa] gi|224093344|ref|XP_002309891.1| photoperiod-response-like protein [Populus trichocarpa] gi|222852789|gb|EEE90336.1| photoperiod-response-like protein [Populus trichocarpa] gi|222852794|gb|EEE90341.1| photoperiod-response-like protein [Populus trichocarpa]

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/438 (55%), Positives = 310/438 (70%), Gaps = 54/438 (12%)

Query: 1   MVRD-DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59
           MVRD DLY+TVPSFFRCPISLDVMKSPVSLCTGVTYDR SI+RWLDSGNNTCPATMQVL 
Sbjct: 1   MVRDVDLYVTVPSFFRCPISLDVMKSPVSLCTGVTYDRTSIERWLDSGNNTCPATMQVLN 60

Query: 60  SKEFVPNRTLQRLIQIWSDSVQ----HRVDSSESATGRPVVLSQDEVKDIIRVAISKNED 115
           SKEFVPNRTLQRLI+IWSDSVQ    +RVDS+ S+     V+++++++ +++   +K +D
Sbjct: 61  SKEFVPNRTLQRLIKIWSDSVQTQKDNRVDSAASS-----VVTREDIEVLVKEMRAK-KD 114

Query: 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIE 175
            ++ L+K + FAKES+EN  FLAKFDG V MLV  L    D+N L++V++V  LILNK+ 
Sbjct: 115 KTDRLSKFICFAKESEENCEFLAKFDGFVEMLVGFLVGDKDINFLERVVKVFVLILNKVG 174

Query: 176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLL 235
           D + L  LILK++ DCL++LL VLKQ  SV S+I +L+++E I  DA+SK  ++E++G L
Sbjct: 175 DYKALRLLILKQNNDCLSALLAVLKQGRSVSSQIGALKIIEAITLDAESKQMVSEKEGFL 234

Query: 236 AETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGN 295
            E VK +SL++D RLIEASLSCLI IS SKR KT LIN K+I EL KL+T G   + S  
Sbjct: 235 LELVKLISLENDPRLIEASLSCLIAISMSKRVKTNLINFKVIAELRKLLTGGQKASVS-- 292

Query: 296 GNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKT----- 350
                           I EKAL+L+E++++ ++GR E C D A +  V+ K+LK      
Sbjct: 293 ----------------IIEKALKLLEMVTSLREGRAEFCNDTACVEAVMNKVLKVSSEAT 336

Query: 351 ------------------AQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVN-- 390
                             AQ+A+  SN LTKILLLMQSNC+P VRQMS DLLKIFRVN  
Sbjct: 337 EHAVMILWSVCYLFRDGDAQDALVKSNGLTKILLLMQSNCSPVVRQMSGDLLKIFRVNSK 396

Query: 391 YKSCLASYDTKTTHIMPF 408
           + SCL+SYDTKTTHIMPF
Sbjct: 397 FSSCLSSYDTKTTHIMPF 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431543|ref|XP_002281970.1| PREDICTED: U-box domain-containing protein 27 [Vitis vinifera]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/432 (53%), Positives = 311/432 (71%), Gaps = 44/432 (10%)

Query: 1   MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60
           MVRD+L+ITVPS FRCPISLDVMKSPVSLCTGVTYDR+SIQRWLD+GNNTCPATMQVL S
Sbjct: 1   MVRDNLFITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHS 60

Query: 61  KEFVPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNEDFSENL 120
           K+FVPN TLQRLIQIWS+SV+HR +S +S       LS D+ +D+I+   SK ED  E +
Sbjct: 61  KDFVPNHTLQRLIQIWSNSVRHRSNSPDSPIQLVPSLSPDQARDLIKEIESKPEDCLECM 120

Query: 121 TKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQH 179
           +KI+ FA+ES+E++ FLA+ DG V +LV+ L + N +   L+QV+RVLD+I+++ ED + 
Sbjct: 121 SKIICFARESEESRKFLARIDGFVSLLVDFLGSGNANFLALEQVVRVLDMIISEHEDHKQ 180

Query: 180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETV 239
           L N +LK D+DCL+S+LLVL QQ S +SRI S R+LE IA DA+SK+ IAE+DGL +E +
Sbjct: 181 LANSMLKSDRDCLSSILLVL-QQGSAESRIASARVLESIAIDAESKLLIAEKDGLFSELI 239

Query: 240 KSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGN 299
           + +S ++D  +IE++LSCLI +S  +R + K++   ++ +L KL++D             
Sbjct: 240 RIMSTETDPTMIESTLSCLIAVSMPRRIRPKIVRLGVVKQLTKLLSD------------- 286

Query: 300 GNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKT--------- 350
                  N +V +TEKAL+L+E+ S+ K+G+ EIC+++  ++ +VQKMLK          
Sbjct: 287 ------PNWSVSVTEKALKLLEMASSCKEGKSEICENSDCVSAIVQKMLKVSSTATEHAV 340

Query: 351 --------------AQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYKSCLA 396
                         AQ  V+ +N LTKIL+LMQSNC+PAVRQ++ DLLKIFRV+ KSCL+
Sbjct: 341 TILWSVCYLSRDDRAQSTVTQNNGLTKILVLMQSNCSPAVRQLAGDLLKIFRVSSKSCLS 400

Query: 397 SYDTKTTHIMPF 408
           SYDTKTTHIMPF
Sbjct: 401 SYDTKTTHIMPF 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131194|ref|XP_002328478.1| predicted protein [Populus trichocarpa] gi|222838193|gb|EEE76558.1| predicted protein [Populus trichocarpa]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/438 (54%), Positives = 296/438 (67%), Gaps = 61/438 (13%)

Query: 1   MVRD-DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59
           MVRD +LY+TVP+ FRCPISLDVMKSPVSLCTGVTYDR SIQRWLDSGNNTCPATMQVL 
Sbjct: 1   MVRDVNLYVTVPNLFRCPISLDVMKSPVSLCTGVTYDRTSIQRWLDSGNNTCPATMQVLN 60

Query: 60  SKEFVPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNEDFSEN 119
           SKEFVPNRTLQRLIQIWSDSVQ + D  E            EV+ +++  +   +   ++
Sbjct: 61  SKEFVPNRTLQRLIQIWSDSVQTQNDLRE------------EVEVLVK-EMRAQKGKVDH 107

Query: 120 LTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH 179
           L+K + FAKES+EN  FLAKFDG V MLV  L    D++ L++V+RV  +IL K+ D + 
Sbjct: 108 LSKFICFAKESEENCEFLAKFDGFVEMLVGFLDGDKDIDFLERVVRVFAMILKKVGDYKA 167

Query: 180 LMNLILKRD----QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLL 235
           L  LILK++     DCL+SLLLVLKQ  SV+SR+  ++++E I  DA+SK  ++E++G L
Sbjct: 168 LRLLILKQNNGGSHDCLSSLLLVLKQGRSVNSRVGVIKIIEAITLDAESKQMLSEKEGFL 227

Query: 236 AETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGN 295
            E VK +SL+ D  LIEASLSCL  IS SKR K KLIN K+I EL KL+T G        
Sbjct: 228 LELVKLISLEKDPSLIEASLSCLTAISMSKRVKIKLINLKIIAELRKLLTGGQ------- 280

Query: 296 GNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK------ 349
                      N +V I EKAL+L+E++++ ++GR E C DAA +  V+ K+LK      
Sbjct: 281 -----------NASVSIIEKALKLLEMVASFREGRAEFCNDAACVEAVMNKVLKVSSEAT 329

Query: 350 -----------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYK 392
                             A++AV  SN LTKILLLMQSNC+P VRQMS DLLKIFRVN K
Sbjct: 330 EHAVMILWSACYLFRDRVAKDAVVKSNGLTKILLLMQSNCSPGVRQMSGDLLKIFRVNSK 389

Query: 393 S--CLASYDTKTTHIMPF 408
           S  CL+SY+TKTTHIMPF
Sbjct: 390 SDYCLSSYETKTTHIMPF 407

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552356|ref|XP_002517222.1| E3 ubiquitin ligase PUB14, putative [Ricinus communis] gi|223543593|gb|EEF45122.1| E3 ubiquitin ligase PUB14, putative [Ricinus communis]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 245/437 (56%), Positives = 298/437 (68%), Gaps = 54/437 (12%)

Query: 1   MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60
           MVRDDLYI VPS FRCPISLDVMKSPVSL TGVTYDRASIQRWLD+GNNTCPATMQVLQS
Sbjct: 1   MVRDDLYINVPSLFRCPISLDVMKSPVSLSTGVTYDRASIQRWLDNGNNTCPATMQVLQS 60

Query: 61  KEFVPNRTLQRLIQIWSDSVQH-----RVDSSESATGRPVVLSQDEVKDIIRVAISKNED 115
           K+FVPNRTLQRLIQIWSDSV+H     RVD   SA    VV SQDE+K I+   I KN  
Sbjct: 61  KDFVPNRTLQRLIQIWSDSVEHYQSHRRVD---SAVDNSVVPSQDEIKCIVE-DIEKNRC 116

Query: 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSN-VNDVNMLKQVIRVLDLILNKI 174
             ++L KI+ F +ES+EN++FLAK DG V MLV+ L +  +D+N ++QV+RVLDLIL   
Sbjct: 117 CFDDLRKIMCFGEESEENRSFLAKMDGFVEMLVDFLGDKKDDINFIEQVVRVLDLILMYT 176

Query: 175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGL 234
              Q   +   K++    +SLLL+L Q  SV SRI S+R++E ++ DA+SK+ I E D L
Sbjct: 177 AKYQQFTS---KKNL---DSLLLILLQGRSVQSRIGSVRIMESMSNDAESKLLIGENDEL 230

Query: 235 LAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSG 294
           L E +KS  LD+D  LI+ASLSCLI+IS ++R ++KL+N K I EL  ++T   N     
Sbjct: 231 LLELIKSTGLDTDPSLIQASLSCLISISKARRVRSKLVNLKTIPELRNILTAEPNTGVIS 290

Query: 295 NGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK----- 349
           N                +TEKAL+L+E LS+ K+GR EIC D   +  VV K+ K     
Sbjct: 291 NA---------------MTEKALKLLETLSSCKEGRAEICGDLVCIEAVVNKVFKISSEA 335

Query: 350 ------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNY 391
                              A+EAV  SN LTKILLLMQSNC+PAVRQM+ADLLKIFRVN 
Sbjct: 336 TEHAVTILWSLCYLFRDGKAREAVIKSNGLTKILLLMQSNCSPAVRQMAADLLKIFRVNS 395

Query: 392 KSCLASYDTKTTHIMPF 408
           KSCL+SYDTKTTHIMPF
Sbjct: 396 KSCLSSYDTKTTHIMPF 412

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519821|ref|XP_003630199.1| U-box domain-containing protein [Medicago truncatula] gi|357519901|ref|XP_003630239.1| U-box domain-containing protein [Medicago truncatula] gi|355524221|gb|AET04675.1| U-box domain-containing protein [Medicago truncatula] gi|355524261|gb|AET04715.1| U-box domain-containing protein [Medicago truncatula]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/441 (53%), Positives = 302/441 (68%), Gaps = 56/441 (12%)

Query: 1   MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60
           MVRDDL ITVPS FRCPISLDVMKSPVSLCTGVTYDR+SIQRWLD+GNNTCPATMQ+LQ+
Sbjct: 1   MVRDDLCITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQILQT 60

Query: 61  KEFVPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNEDFSEN- 119
           K+FVPNRTLQRLIQIWSDSV+HRVDS ES    P+     + +D + VAI+  E  SEN 
Sbjct: 61  KDFVPNRTLQRLIQIWSDSVRHRVDSPES----PLSTESVDRRDQLIVAITDFESGSENQ 116

Query: 120 ---LTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-----DVNMLKQVIRVLDLIL 171
              L KIV FAK+S+EN  FLAK +G V +LV  L NV+      V +L+QV+  LDL+L
Sbjct: 117 FDSLVKIVRFAKDSEENCVFLAKTEGFVCVLVSFLDNVDGGVERSVELLEQVVIALDLVL 176

Query: 172 NKIEDQQHLMNLILKRD-QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAE 230
            KIE+++ ++    + + +  L+SLLLVL QQ S +S+I S+R+L+FIA DA+SK+ +AE
Sbjct: 177 CKIENRESILKSKKENESKSILDSLLLVL-QQGSCESKIASVRVLKFIAVDAESKLLVAE 235

Query: 231 RDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNG 290
           ++GLL+E +  ++   D+ L+E +LSCL+ IS+ KR K KL++   +     L+T     
Sbjct: 236 KEGLLSELLNQITPKKDQNLMENALSCLVAISTPKRNKAKLVHLGAVKVFSNLLT----- 290

Query: 291 NGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKT 350
                         S +  V +TEK L+L+E +S+TK+GR EIC+  + +  +V K+LK 
Sbjct: 291 -------------ASPSLCVSVTEKVLKLLETVSSTKEGRSEICEAPSCVVAIVNKVLKV 337

Query: 351 -----------------------AQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIF 387
                                  AQEAV+ +N LTKILLLMQSNC+P VRQMS DLLKIF
Sbjct: 338 STVATEHAVTILWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSVDLLKIF 397

Query: 388 RVNYKSCLASYDTKTTHIMPF 408
           RVN KSCL+SYDTKTTHIMPF
Sbjct: 398 RVNSKSCLSSYDTKTTHIMPF 418

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525586|ref|XP_003531405.1| PREDICTED: U-box domain-containing protein 27-like [Glycine max]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/442 (53%), Positives = 304/442 (68%), Gaps = 58/442 (13%)

Query: 1   MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60
           MVRDDL ITVPSFFRCPISLDVMKSPVSLCTGVTYDR+SIQRWLD+GNNTCPATMQVLQ+
Sbjct: 1   MVRDDLCITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQT 60

Query: 61  KEFVPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEV-KDIIRVAISKNEDFSEN 119
            +FVPNRTLQRLIQIWSDSV HRVDS +S T      SQ  + KD I VAIS     S+N
Sbjct: 61  TDFVPNRTLQRLIQIWSDSVTHRVDSPDSPTSTE---SQSLLSKDHILVAISDLHTRSDN 117

Query: 120 ----LTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKI 174
               L+KI  FA++S+EN+ FL + +  V +LV  L NVN  V  L+QV+  LDL+++K+
Sbjct: 118 RFNSLSKIARFAQDSEENRDFLVRTECFVPVLVGFLDNVNGGVEFLQQVVTALDLVISKM 177

Query: 175 EDQQHLMNLILKR----DQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAE 230
           ED++ + NLILKR    ++  ++SLLLVL QQ S  S+I S R+L+ +A DA+SK+ +AE
Sbjct: 178 EDREGMKNLILKRQGEGEKQSVDSLLLVL-QQGSHASKIASARVLKSVAVDAESKLLLAE 236

Query: 231 RDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNG 290
           ++GL++E +  ++ + D  LIE  LSCL++IS+ +R+K KL+    +     L+      
Sbjct: 237 KEGLVSELLNLITPEKDPDLIENCLSCLVSISTPRRSKMKLVRLGAVKVFSNLL------ 290

Query: 291 NGSGNGNGNGNGNGSGNG-TVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK 349
                         S  G +V + EK L+LVE +S+TK+GR EIC+D+A ++ +V K+LK
Sbjct: 291 --------------SAPGLSVSVKEKVLKLVETVSSTKEGRSEICEDSACVSAIVDKVLK 336

Query: 350 T-----------------------AQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKI 386
                                   AQEAV+ +N LTKILLLMQSNC+P VRQMS+DLLKI
Sbjct: 337 VSSVATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSSDLLKI 396

Query: 387 FRVNYKSCLASYDTKTTHIMPF 408
           FRVN KSCL+SYDTKTTHIMPF
Sbjct: 397 FRVNSKSCLSSYDTKTTHIMPF 418

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512817|ref|XP_003525112.1| PREDICTED: U-box domain-containing protein 27-like [Glycine max]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/450 (51%), Positives = 297/450 (66%), Gaps = 74/450 (16%)

Query: 1   MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60
           MVRDDL ITVPSFFRCPISLDVMKSPVSLCTGVTYDR+SIQRWLD+GNNTCPATMQVLQ+
Sbjct: 1   MVRDDLCITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQT 60

Query: 61  KEFVPNRTLQRLIQIWSDSVQHRVDSSESATG--RPVVLSQDEVKDIIRVAISKNEDFSE 118
           ++FVPNRTLQRLIQIWSDSV  RVDS ES T      VLS+D+    I VAIS+ +    
Sbjct: 61  RDFVPNRTLQRLIQIWSDSVTLRVDSPESPTSTQSESVLSKDQ----ILVAISELQTHCA 116

Query: 119 N----LTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVND-VNMLKQVIRVLDLILNK 173
           N    L KI  FA++S+EN  FL + +  V  LV  L NVND V  L+QV+  LDL+++K
Sbjct: 117 NRFDSLAKIARFAQDSEENLDFLVRTECFVPALVGFLDNVNDGVEFLEQVVTALDLVVSK 176

Query: 174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDS------------RIESLRLLEFIAGD 221
           +ED + L NLILKR             +++SVDS            +I S R+L+ +A D
Sbjct: 177 MEDCEGLKNLILKRQGG---------GEKQSVDSLLLLLQQGSHVIKIASARVLKSLAVD 227

Query: 222 ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELG 281
           A+SK+ +AE+DGLL+E +  ++ + D  L+E  LSCL+++S+ +R+K KL+    +    
Sbjct: 228 AESKLLLAEKDGLLSELLNLITPEKDPDLMENCLSCLVSLSTPRRSKMKLVRLGAVKVFS 287

Query: 282 KLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLN 341
            L++                   + + +V +TEK L+LVE +S+TK+GR EIC+D+A ++
Sbjct: 288 NLLS-------------------TPSLSVSVTEKVLKLVETVSSTKEGRSEICEDSACVS 328

Query: 342 GVVQKMLKT-----------------------AQEAVSSSNVLTKILLLMQSNCTPAVRQ 378
            +V K+LK                        AQEAV+ +N LTKILLLMQSNC+P VRQ
Sbjct: 329 AIVNKVLKVSSVATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQ 388

Query: 379 MSADLLKIFRVNYKSCLASYDTKTTHIMPF 408
           MS+DLLKIFRVN KSCL+SYDTKTTHIMPF
Sbjct: 389 MSSDLLKIFRVNSKSCLSSYDTKTTHIMPF 418

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464565|ref|XP_003602564.1| U-box domain-containing protein [Medicago truncatula] gi|355491612|gb|AES72815.1| U-box domain-containing protein [Medicago truncatula]

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/443 (49%), Positives = 295/443 (66%), Gaps = 59/443 (13%)

Query: 1   MVRD---DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQV 57
           MVR+   DL ITVP+FF+CPISLDVMKSPVSLCTGVTYDR+SIQRWLD GNNTCPATMQ+
Sbjct: 1   MVRERVVDLCITVPTFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQI 60

Query: 58  LQSKEFVPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDE----VKDIIRVAISKN 113
           L +K+FVPNRTL  LIQIW+DSV HRV+   S    P VLS  +    + D+    +++ 
Sbjct: 61  LPTKDFVPNRTLHSLIQIWTDSVHHRVEPVVS----PSVLSNQQLLQTITDLASSGLNRT 116

Query: 114 EDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVN----MLKQVIRVLDL 169
            +    + K++ FA++SD+N+TFLAK DG + ++V  L NV +V+     L+Q + VL L
Sbjct: 117 LNRFGLIMKVIHFAQDSDQNRTFLAKLDGFIPLMVSFLDNVENVDKSIEFLEQTLTVLGL 176

Query: 170 ILNKIEDQQHLMNLILK-RDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKI 228
           IL KI+ ++ L NL+LK +++ CL+S++LVL Q+ S +SRI + R+L+FIA DA+S++ I
Sbjct: 177 ILEKIKVREGLKNLVLKGKNKKCLDSMVLVL-QKGSNNSRIATARVLKFIAIDAESELLI 235

Query: 229 AERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGH 288
           AE + LL E +K  S ++D +LIE  LSCLI IS  KR K KL+   ++  L KL+ +  
Sbjct: 236 AENEALLTELLKLSSPENDSKLIENCLSCLIAISKPKRNKQKLVKIGVMKILSKLLKE-- 293

Query: 289 NGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKML 348
                             N +V + EKAL+LVE  S+T +GR E+C+DAA +  ++ K+ 
Sbjct: 294 -----------------SNTSVTVVEKALKLVETASSTSEGRREMCEDAAFVAAILNKIR 336

Query: 349 -----------------------KTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLK 385
                                  + AQEAV+ +N LTKILLL+QSNC+P VRQM  DLLK
Sbjct: 337 NVSNVATEHAVTTLWSVCYLFRDQKAQEAVTMANGLTKILLLIQSNCSPQVRQMCTDLLK 396

Query: 386 IFRVNYKSCLASYDTKTTHIMPF 408
           IFRVN KSCL+SYDTKT+HIMPF
Sbjct: 397 IFRVNSKSCLSSYDTKTSHIMPF 419

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797485|ref|XP_002866627.1| U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297312462|gb|EFH42886.1| U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 224/441 (50%), Positives = 298/441 (67%), Gaps = 55/441 (12%)

Query: 1   MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60
           M +DDL ITVP+FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLD GNNTCPATMQ+LQ+
Sbjct: 1   MRKDDLCITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQN 60

Query: 61  KEFVPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDII-RVAISKNE-DFSE 118
           K+F+PNRTLQRLI+IWSDSV+ RV    +    P   ++DE+ D I RV I K E D  E
Sbjct: 61  KDFIPNRTLQRLIEIWSDSVRRRVCVESAELAAP---TRDEITDAIDRVKIEKEERDDRE 117

Query: 119 NLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVN-------MLKQVIRVLDLIL 171
            L+KIV F +ESD+N+ FLA  D  V +LV++++ V+          ++++ +++L +I 
Sbjct: 118 VLSKIVRFGRESDDNRGFLAGKDDFVRLLVDLINQVDFKTTSAAKSLVVQEAVKILSMIR 177

Query: 172 NKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAER 231
            KI D++   NLIL   +D L ++++ L    +V+ +I+   LLEFIA DA+SK+ IAER
Sbjct: 178 TKISDRRRFSNLILTNGRDRL-TVIVYLFTTGNVELKIDCAGLLEFIAVDAESKLLIAER 236

Query: 232 DGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGN 291
           DG++ E +KS+S DSD  LIE+SLSCLI ISS KR K  LI   LI ++ KL++      
Sbjct: 237 DGVITELMKSISKDSDLSLIESSLSCLIAISSPKRVKLNLIREILIGDVTKLLS------ 290

Query: 292 GSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEIC-QDAALLNGVVQKMLKT 350
                        S + +V +TEK L+L+EIL++TK+GR EIC  D   L  VV+K++K 
Sbjct: 291 ------------DSTSSSVSVTEKCLKLLEILASTKEGRAEICGGDGECLKTVVKKLMKV 338

Query: 351 -----------------------AQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIF 387
                                  A EAV+S+N +TKILLL+QSNC+PAVR+M  DLLK+F
Sbjct: 339 STAATEHAVTVLWSVSYLFKEDKALEAVTSANGVTKILLLLQSNCSPAVRRMLTDLLKVF 398

Query: 388 RVNYKSCLASYDTKTTHIMPF 408
           +VN +SCL++YDTKTTHIMPF
Sbjct: 399 KVNSRSCLSAYDTKTTHIMPF 419

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237755|ref|NP_201271.1| U-box domain-containing protein 27 [Arabidopsis thaliana] gi|75309180|sp|Q9FLF4.1|PUB27_ARATH RecName: Full=U-box domain-containing protein 27; AltName: Full=Plant U-box protein 27 gi|10178069|dbj|BAB11433.1| unnamed protein product [Arabidopsis thaliana] gi|66792616|gb|AAY56410.1| At5g64660 [Arabidopsis thaliana] gi|98961127|gb|ABF59047.1| At5g64660 [Arabidopsis thaliana] gi|332010550|gb|AED97933.1| U-box domain-containing protein 27 [Arabidopsis thaliana]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/443 (51%), Positives = 303/443 (68%), Gaps = 58/443 (13%)

Query: 1   MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60
           M +DDL ITVP+FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLD GNNTCPATMQ+LQ+
Sbjct: 1   MRKDDLCITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQN 60

Query: 61  KEFVPNRTLQRLIQIWSDSVQHR--VDSSESATGRPVVLSQDEVKDII-RVAISKNE-DF 116
           K+F+PNRTLQRLI+IWSDSV+ R  V+S+E A       ++DE+ D I RV I K E D 
Sbjct: 61  KDFIPNRTLQRLIEIWSDSVRRRTCVESAELAAP-----TRDEIADAIDRVKIEKEERDD 115

Query: 117 SENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVN-------MLKQVIRVLDL 169
            E L+KIV F +ESD+N+ FLA  D  V +LV++++ V+          ++++ +++L  
Sbjct: 116 REVLSKIVRFGRESDDNRGFLAGKDDFVKLLVDLINQVDFETTSAAKSLVVQEAVKILST 175

Query: 170 ILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIA 229
           I +K+ D++   NLIL   +D L S+++ L +  +V+ +I+   LLEFIA DA+SK+ IA
Sbjct: 176 IRSKVSDRRRFSNLILTNGRDRL-SVIVYLFKTGNVELKIDCAGLLEFIAVDAESKLLIA 234

Query: 230 ERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHN 289
           ERDGL+ E +KS+S DSD  LIE+SLSCLI ISS KR K  L+  KLI ++ KL++    
Sbjct: 235 ERDGLITELMKSISKDSDLSLIESSLSCLIAISSPKRVKLNLLREKLIGDVTKLLS---- 290

Query: 290 GNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEIC-QDAALLNGVVQKML 348
                        + + + +V +TEK L+L+EIL++TK+GR EIC  D   L  VV+K++
Sbjct: 291 -------------DSTSSLSVSVTEKCLKLLEILASTKEGRSEICGGDGECLKTVVKKLM 337

Query: 349 KT-----------------------AQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLK 385
           K                        A EAV+S N +TKILLL+QSNC+PAVR+M  DLLK
Sbjct: 338 KVSTAATEHAVTVLWSVSYLFKEDKALEAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLK 397

Query: 386 IFRVNYKSCLASYDTKTTHIMPF 408
           +F+VN +SCL++YDTKTTHIMPF
Sbjct: 398 VFKVNSRSCLSAYDTKTTHIMPF 420

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2174814	420	CMPG2 ""CYS, MET, PRO, and GLY	0.943	0.916	0.514	6.4e-99
TAIR|locus:2144846	409	AT5G09800 [Arabidopsis thalian	0.681	0.679	0.530	7.2e-88
TAIR|locus:2093974	415	PUB29 "plant U-box 29" [Arabid	0.681	0.669	0.531	8.2e-85
TAIR|locus:2039265	411	PUB23 "plant U-box 23" [Arabid	0.674	0.669	0.305	3e-33
TAIR|locus:2090604	421	PUB25 "plant U-box 25" [Arabid	0.965	0.935	0.267	3.1e-28
TAIR|locus:2152049	444	AT5G65920 [Arabidopsis thalian	0.625	0.574	0.282	2.4e-23
TAIR|locus:2079964	435	PUB22 "plant U-box 22" [Arabid	0.495	0.464	0.319	4.4e-23
TAIR|locus:2012136	421	PUB26 "plant U-box 26" [Arabid	0.627	0.608	0.255	6.5e-23
TAIR|locus:2013688	729	PUB17 "plant U-box 17" [Arabid	0.674	0.377	0.290	4.3e-21
TAIR|locus:2169861	435	AT5G37490 [Arabidopsis thalian	0.306	0.287	0.386	1.2e-20

TAIR|locus:2174814 CMPG2 ""CYS, MET, PRO, and GLY protein 2"" [Arabidopsis thaliana (taxid:3702)]

 Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
 Identities = 228/443 (51%), Positives = 302/443 (68%)

Query:     1 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60
             M +DDL ITVP+FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLD GNNTCPATMQ+LQ+
Sbjct:     1 MRKDDLCITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQN 60

Query:    61 KEFVPNRTLQRLIQIWSDSVQHR--VDSSESATGRPVVLSQDEVKDII-RVAISKNE-DF 116
             K+F+PNRTLQRLI+IWSDSV+ R  V+S+E A   P   ++DE+ D I RV I K E D 
Sbjct:    61 KDFIPNRTLQRLIEIWSDSVRRRTCVESAELAA--P---TRDEIADAIDRVKIEKEERDD 115

Query:   117 SENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVN-------MLKQVIRVLDL 169
              E L+KIV F +ESD+N+ FLA  D  V +LV++++ V+          ++++ +++L  
Sbjct:   116 REVLSKIVRFGRESDDNRGFLAGKDDFVKLLVDLINQVDFETTSAAKSLVVQEAVKILST 175

Query:   170 ILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIA 229
             I +K+ D++   NLIL   +D L S+++ L +  +V+ +I+   LLEFIA DA+SK+ IA
Sbjct:   176 IRSKVSDRRRFSNLILTNGRDRL-SVIVYLFKTGNVELKIDCAGLLEFIAVDAESKLLIA 234

Query:   230 ERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHX 289
             ERDGL+ E +KS+S DSD  LIE+SLSCLI ISS KR K  L+  KLI ++ KL++D   
Sbjct:   235 ERDGLITELMKSISKDSDLSLIESSLSCLIAISSPKRVKLNLLREKLIGDVTKLLSDS-- 292

Query:   290 XXXXXXXXXXXXXXXXXXXTVLITEKALRLVEILSTTKQGRMEICQ-DAALLNGVVQKML 348
                                +V +TEK L+L+EIL++TK+GR EIC  D   L  VV+K++
Sbjct:   293 ---------------TSSLSVSVTEKCLKLLEILASTKEGRSEICGGDGECLKTVVKKLM 337

Query:   349 KT-----------------------AQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLK 385
             K                        A EAV+S N +TKILLL+QSNC+PAVR+M  DLLK
Sbjct:   338 KVSTAATEHAVTVLWSVSYLFKEDKALEAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLK 397

Query:   386 IFRVNYKSCLASYDTKTTHIMPF 408
             +F+VN +SCL++YDTKTTHIMPF
Sbjct:   398 VFKVNSRSCLSAYDTKTTHIMPF 420

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2144846 AT5G09800 [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 7.2e-88, Sum P(2) = 7.2e-88
 Identities = 155/292 (53%), Positives = 199/292 (68%)

Query:     1 MVRDDLYIT-VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59
             M  DDLYIT VP FF+CPISLDVMKSPVSL TGVTYDR SIQRWLD GNNTCPATMQ+LQ
Sbjct:     1 MRSDDLYITTVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPATMQILQ 60

Query:    60 SKEFVPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNEDFSEN 119
             +KEFVPN TL RLI  WSDS+  R DS    +  P   ++DE    I  AI +    ++ 
Sbjct:    61 NKEFVPNLTLHRLIDHWSDSINRRADSESPESDTP---TRDE----INAAIERFRIENDA 113

Query:   120 LTKIVAFAKESDENKTFLAKFDGLVVMLVEILS---NVNDVNMLK--QVIRVLDLILNKI 174
              +KI+ FA+ESDEN+ FLA  D  V MLV+++S   N +D  +L   + +++L +I  KI
Sbjct:   114 RSKILRFARESDENREFLAGKDDFVAMLVDLISDSRNFSDSQLLLVGEAVKILSMIRRKI 173

Query:   175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGL 234
              D++ L NLIL    DCL S  L++K+      +I+   +LEFIA DA+SK+ IA+ +GL
Sbjct:   174 FDRRRLSNLILTNGGDCLTSFFLLIKRGNP-KLKIDCSAVLEFIAVDAESKLIIAKGEGL 232

Query:   235 LAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITD 286
             + E +K +S DSD  LIEA+LS LI I+SSKR K  LI  KL+T+L  L+TD
Sbjct:   233 VTEIIKLISSDSDSSLIEANLSLLIAIASSKRVKLALIREKLVTKLTSLLTD 284

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2093974 PUB29 "plant U-box 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
 Identities = 154/290 (53%), Positives = 207/290 (71%)

Query:     1 MVRDDL--YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVL 58
             M RD+   YITVPSFF+CPISLDVM+SPVSLCTGVTYDRASIQRWLD GNNTCPATMQ+L
Sbjct:     1 MGRDETETYITVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQLL 60

Query:    59 QSKEFVPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNEDFSE 118
             ++K+FVPN TLQRLI IWSDS+  R  + +S    P    +   K+ + V + +     E
Sbjct:    61 KTKDFVPNLTLQRLINIWSDSIGRR-HNGDSPVLNPPSGREVPTKEEVNVLLERLMSL-E 118

Query:   119 NLTKIVAFAKESDENKTFLAKFDGLVVMLVEIL-SNVNDVNMLKQVIRVLDLILNKIEDQ 177
             NL KIV F K+SD N+ FL+K    V MLV+I+ +    + ++   IR+LD I  K+ D+
Sbjct:   119 NLMKIVRFVKDSDSNREFLSKKMEFVPMLVDIIRTKKTKIELVIMAIRILDSI--KV-DR 175

Query:   178 QHLMNLILKRDQ-DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLA 236
             + L NL+L  D  DCL ++LL + Q+ +++S+IES+R+L++I+ DA SK+ IAERDG+L 
Sbjct:   176 ERLSNLMLANDGGDCLTAILLAI-QRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLT 234

Query:   237 ETVKSLSL--DSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLI 284
             E +KS+S+   SD  LIEASLS LITIS SKR ++KLI  K IT++  ++
Sbjct:   235 EMMKSISITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDIL 284

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2039265 PUB23 "plant U-box 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
 Identities = 87/285 (30%), Positives = 151/285 (52%)

Query:     5 DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGN-NTCPATMQVLQSKEF 63
             D  I +P FF CPISL++MK PV + TG+TYDR SI++WL +G  N+CP T Q +   + 
Sbjct:     7 DEEIEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITDADL 66

Query:    64 VPNRTLQRLIQIWSD-SVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNEDFSENLTK 122
              PN TL+RLIQ W   +  + V+     T RP +  + E++ +IR + S +E+  + L +
Sbjct:    67 TPNHTLRRLIQSWCTLNASYGVE--RIPTPRPPIC-KSEIEKLIRDSASSHENQVKCLKR 123

Query:   123 IVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMN 182
             +     E+  NK  L +  G+   L  I+SN ++   L      L+L+ +    +  L N
Sbjct:   124 LRQIVSENATNKRCL-EAAGVPEFLANIVSNDSENGSLTD--EALNLLYHLETSETVLKN 180

Query:   183 LIL-KRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKS 241
             L+  K+D + + SL  ++ Q+   +SR+ +  LL+ I   AD    +  +  +  E V+ 
Sbjct:   181 LLNNKKDNNIVKSLTKIM-QRGMYESRVYATLLLKNILEVADPMQSMTLKPEVFTEVVQI 239

Query:   242 LSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITD 286
             L     ++  +A++  L+ I    R + K +   +I+ + +L+ D
Sbjct:   240 LDDRISQKATKAAMHILVNICPWGRNRHKAVEAGVISVIIELLMD 284

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=IGI;RCA

GO:0006952 "defense response" evidence=IGI

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2090604 PUB25 "plant U-box 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 113/423 (26%), Positives = 195/423 (46%)

Query:     5 DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNT-CPATMQVLQSKEF 63
             DL I +P  FRCPISL++M+ PV++CTG TYDRASI+ W+  GNNT CP T   L     
Sbjct:     9 DLGIQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTL 68

Query:    64 VPNRTLQRLIQIW-----SDSVQHRVDSSESA--TGRPVVLSQDEVKDIIRVAISKNEDF 116
             +PN TL+RLIQ W     S+ V+      + A  T    +LSQ        V++      
Sbjct:    69 IPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTSVRALLSQASAITGTHVSVRSR--- 125

Query:   117 SENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176
             +  L ++  FA++SD+N+  +A  +   +++  + S      ++ + + +L ++L   E 
Sbjct:   126 AAALRRLRGFARDSDKNRVLIAAHNATEILIKILFSETTSSELVSESLALL-VMLPITEP 184

Query:   177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIA-G--DADSKVKIAERDG 233
              Q +    +  D   +  L  +L    S+++R+ +  L+E ++ G   AD K  I+  + 
Sbjct:   185 NQFVS---ISSDPGRVEFLTRLLFDS-SIETRVNAAALIEIVSTGTKSADLKGSISNSES 240

Query:   234 LLAETVKSLSLD--SDRRLIEASLSCLITISSSKRAKTKLINHKLITEL-GKLITDGHXX 290
             +  E V  L  +  S RR ++  +  L  + S K  +   I       L  +L  D    
Sbjct:   241 VF-EGVLDLLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAADFDRC 299

Query:   291 XXXXXXXXXXXXXXXXXXTVLITEKALRLVEILSTTKQGRMEICQDAA-LLNGVVQKMLK 349
                                    E AL +  ++ T  +      + AA  L  +     +
Sbjct:   300 DTERALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCTAEER 359

Query:   350 TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFR---VNYKSCLASYDTK-TTHI 405
               +EA + + V+ ++LL++QS CT   ++ +  LLK+ R    +Y S   S D   ++ +
Sbjct:   360 WREEA-AGAGVVVQLLLMVQSECTERAKKKAQKLLKLLRDSWPDYNSFANSDDFGCSSQV 418

Query:   406 MPF 408
             +PF
Sbjct:   419 VPF 421

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2152049 AT5G65920 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
 Identities = 77/273 (28%), Positives = 131/273 (47%)

Query:    10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTL 69
             +PS F CPISL+ M+ PV+LCTG TY+R++I +W + G+ TCP TMQ L      PN+TL
Sbjct:    60 IPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNIGHCTCPTTMQELWDDLVTPNKTL 119

Query:    70 QRLIQIW-SDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNEDFSENLTKIVAFAK 128
              +LI  W S         SE   GR +     E+   +R A  K +  + +  K V  A 
Sbjct:   120 HQLIYTWFSQKYVLMKKRSEDVQGRAI-----EILGTLRKAKGKAKVHALSELKQVVMA- 173

Query:   129 ESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRD 188
              +   KT +   +G V ++  +LS      +  + I +L   +N   D      L+    
Sbjct:   174 HAIAKKTVVD--EGGVFVISSLLSPFTSHAVGSEAIAIL---VNLELDSDSKAGLM---- 224

Query:   189 QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDR 248
             Q    SL++ +    S++++I   RL+  +  +   + ++     LL   ++ L  D  R
Sbjct:   225 QPARVSLMVDMLNDGSIETKINCARLIGRLVEEKGFRAELVSSHSLLVGLMR-LVKDRRR 283

Query:   249 RL-IEASLSCLITISSSKRAKTKLINHKLITEL 280
             R  +  +L+ L ++S  K+ +  L+    + +L
Sbjct:   284 RNGVSPALTLLKSVSVHKQVRNLLVRIGAVPQL 316

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2079964 PUB22 "plant U-box 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
 Identities = 67/210 (31%), Positives = 112/210 (53%)

Query:     5 DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGN-NTCPATMQVLQSKEF 63
             D  I +PSFF CPISLD+MK PV + TG+TYDR SI++WL SG  N+CP T QV+   + 
Sbjct:     2 DQEIEIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVITETDL 61

Query:    64 VPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNEDFSENLTKI 123
              PN TL+RLIQ W  ++          T +P +  + E++ +I+ + S + +  + L ++
Sbjct:    62 TPNHTLRRLIQSWC-TLNASYGIERIPTPKPPIC-KSEIEKLIKESSSSHLNQVKCLKRL 119

Query:   124 VAFAKESDENKTFLAKFDGLVVMLVEILSN-VNDVNMLKQVIRVLDLILNKIEDQQHLMN 182
                  E+  NK  L   + +   L  I+SN V+  N     +   +L  N +  Q +++ 
Sbjct:   120 RQIVSENTTNKRCLEAAE-VPEFLANIVSNSVDTYNSPSSSLSSSNL--NDM-CQSNMLE 175

Query:   183 LILKRDQDCLNSLLLVLKQQESVDSRIESL 212
                   +  ++  L VL   ++ ++ ++SL
Sbjct:   176 NRFDSSRSLMDEALSVLYHLDTSETALKSL 205

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=IGI;RCA

GO:0006952 "defense response" evidence=IGI

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2012136 PUB26 "plant U-box 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
 Identities = 71/278 (25%), Positives = 132/278 (47%)

Query:     5 DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFV 64
             DL I +P  FRCPISLD+M  PV++ TG TYDR SI  W+  GN TCP T   L     +
Sbjct:     9 DLGIQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVALSDFTLI 68

Query:    65 PNRTLQRLIQIW-----SDSVQHRVDSSESATGRPV--VLSQDEVKDIIRVAISKNEDFS 117
             PN TL+RLIQ W     S+ V+      + A    V  +LSQ        V++      +
Sbjct:    69 PNHTLRRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAITGTHVSVRSR---A 125

Query:   118 ENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIR---VLDLILNKI 174
               + ++   A++S++N+  +A  +   +++  + +++   ++  +++     L ++L+  
Sbjct:   126 AAIRRLRGLARDSEKNRVLIAGHNAREILVRILFADIETTSLSSELVSESLALLVLLHMT 185

Query:   175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFI---AGDADSKVKIAER 231
             E +   +      D   +  +  +L    S++ R+ +  L+E +   A   D K+ I+  
Sbjct:   186 ETECEAV----ASDPSRVGFMTRLLFDS-SIEIRVNAAALIEMVLTGAKSMDLKLIISGS 240

Query:   232 DGLLAETVKSLSLD-SDRRLIEASLSCLITISSSKRAK 268
             D +    +  L    S RR ++  +  +  +   K+ +
Sbjct:   241 DSIFEGVLDLLKNPISSRRALKIGIKAIFALCLVKQTR 278

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2013688 PUB17 "plant U-box 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 4.3e-21, P = 4.3e-21
 Identities = 86/296 (29%), Positives = 149/296 (50%)

Query:     5 DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFV 64
             D +ITVP  F CPISLD+M  PV + TG TYDR SI RW++ G+ TCP T Q+L     V
Sbjct:   300 DTFITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIV 359

Query:    65 PNRTLQRLIQIW--SDSVQHR---VDS-SES-ATGRPVVLSQDEVKDIIRVAISKNEDFS 117
             PNR L+ LI  W  +  + +     DS +ES A+  P   + +  K  + + I    D S
Sbjct:   360 PNRALKNLIVQWCTASGISYESEFTDSPNESFASALPTKAAVEANKATVSILIKYLADGS 419

Query:   118 ENLTKIVA-----FAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILN 172
             +    + A      AK   EN+ ++A+  G +  L  +L++ N +     V  +L+L + 
Sbjct:   420 QAAQTVAAREIRLLAKTGKENRAYIAEA-GAIPHLCRLLTSENAIAQENSVTAMLNLSIY 478

Query:   173 KIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERD 232
             + +++  +M      + DCL S++ VL    +V+++  +   L  ++   + K +IA  D
Sbjct:   479 E-KNKSRIME-----EGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIAIVD 532

Query:   233 GLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITEL-GKLITDG 287
               + E +  L  +   R  + +++ L  +S+     +++I    ++ L G L  +G
Sbjct:   533 QCV-EALALLLQNGTPRGKKDAVTALYNLSTHPDNCSRMIEGGGVSSLVGALKNEG 587

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0009626 "plant-type hypersensitive response" evidence=IGI

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IGI

TAIR|locus:2169861 AT5G37490 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
 Identities = 51/132 (38%), Positives = 77/132 (58%)

Query:     8 ITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNR 67
             IT+P  F+CPIS+D+MK PV + TG+TYDR SI+ W++SGN TCP T  VL + + +PN 
Sbjct:    29 ITIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWINSGNKTCPVTNTVLTTFDQIPNH 88

Query:    68 TLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAIS--KNEDFSEN---LTK 122
             T++++IQ W   V+      +      V L   EV +I R   S  +  D+ +    + K
Sbjct:    89 TIRKMIQGWC--VEKGSPLIQRIPTPRVPLMPCEVYEISRKLSSATRRGDYEKCGVIIEK 146

Query:   123 IVAFAKESDENK 134
             I     ES++N+
Sbjct:   147 IKKLGDESEKNR 158

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLF4	PUB27_ARATH	6, ., 3, ., 2, ., -	0.5101	0.9436	0.9166	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
smart00504	63	smart00504, Ubox, Modified RING finger domain	9e-21
pfam04564	73	pfam04564, U-box, U-box domain	2e-17
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	1e-04
smart00184	40	smart00184, RING, Ring finger	3e-04
PLN02590	539	PLN02590, PLN02590, probable tyrosine decarboxylas	0.002

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 85.0 bits (211), Expect = 9e-21
 Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLI 73
          F CPISL+VMK PV L +G TY+R++I++WL S + T P T Q L  ++ +PN  L+  I
Sbjct: 2  FLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAI 60

Query: 74 QIW 76
          Q W
Sbjct: 61 QEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 28/67 (41%), Positives = 42/67 (62%)

Query: 10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTL 69
          +P  F  PI+L++MK PV L +G+TYDR++I+R L S + T P T + L   + +PN  L
Sbjct: 1  IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60

Query: 70 QRLIQIW 76
          +  I  W
Sbjct: 61 KEKIDAW 67

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 12 SFFRCPISLDVMKS----PVSLCTGVTYDRASIQRWLDSGNN-TCP 52
          S F CPIS +VM      PV L  G  Y R ++++   +G    CP
Sbjct: 9  SIFVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCP 54

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 16 CPISLDVM-KSPVSLCTGVTYDRASIQRWLDSGNNTCP 52
          CPI L+   K PV L  G T+ R+ I++WL+SGNNTCP
Sbjct: 1  CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCP 38

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 289 NGNGSGNGNGNGNGNGSGNGTVLITEKAL 317
           NGNG+ NGNG+ NGNG  NG  ++  K +
Sbjct: 26  NGNGNYNGNGHVNGNGKANGAKVVKMKPM 54

Length = 539

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.93
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.93
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.92
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.89
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.88
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.88
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.87
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.86
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.84
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.8
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.75
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.69
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.61
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.52
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.51
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.47
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.39
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.37
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.35
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.35
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.31
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.3
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.3
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.29
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.29
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.2
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.18
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.18
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.14
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	99.11
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	99.08
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	99.07
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	99.06
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	99.03
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.98
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.97
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.94
PRK09687	280	putative lyase; Provisional	98.92
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.91
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.89
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.86
PHA02929	238	N1R/p28-like protein; Provisional	98.84
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.83
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.83
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.83
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.81
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	98.79
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.79
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.75
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.73
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.68
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.68
PF14634	44	zf-RING_5: zinc-RING finger domain	98.6
PRK09687	280	putative lyase; Provisional	98.59
PHA02926	242	zinc finger-like protein; Provisional	98.57
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.54
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.53
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.53
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.52
COG5222	427	Uncharacterized conserved protein, contains RING Z	98.5
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.45
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.42
KOG2660	331	consensus Locus-specific chromosome binding protei	98.39
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.39
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.37
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.33
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.32
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.28
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.26
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.23
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.22
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.19
KOG0297	391	consensus TNF receptor-associated factor [Signal t	98.15
PF05536	543	Neurochondrin: Neurochondrin	98.05
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	98.04
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.03
KOG0289	506	consensus mRNA splicing factor [General function p	98.03
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	98.03
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.0
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.98
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.91
KOG4646	173	consensus Uncharacterized conserved protein, conta	97.91
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.82
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.8
COG5152	259	Uncharacterized conserved protein, contains RING a	97.79
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.78
COG5369	743	Uncharacterized conserved protein [Function unknow	97.76
PF05536	543	Neurochondrin: Neurochondrin	97.76
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.72
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.71
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.69
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	97.68
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.68
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.62
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.61
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.61
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.56
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.53
PTZ00429	746	beta-adaptin; Provisional	97.51
KOG3039	303	consensus Uncharacterized conserved protein [Funct	97.51
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.48
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.47
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.44
KOG1002	791	consensus Nucleotide excision repair protein RAD16	97.42
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.4
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.38
PF04641	260	Rtf2: Rtf2 RING-finger	97.38
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.35
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.34
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.33
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.29
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.26
KOG4367	699	consensus Predicted Zn-finger protein [Function un	97.24
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.2
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.14
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	97.12
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	97.12
KOG3039	303	consensus Uncharacterized conserved protein [Funct	97.09
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.04
KOG3036	293	consensus Protein involved in cell differentiation	97.03
KOG2973	353	consensus Uncharacterized conserved protein [Funct	96.97
KOG3678	832	consensus SARM protein (with sterile alpha and arm	96.96
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.95
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	96.95
TIGR02270	410	conserved hypothetical protein. Members are found	96.83
KOG2979	262	consensus Protein involved in DNA repair [General	96.77
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	96.74
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.68
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.66
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	96.62
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.59
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.57
KOG3113	293	consensus Uncharacterized conserved protein [Funct	96.49
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.47
PTZ00429	746	beta-adaptin; Provisional	96.44
TIGR02270	410	conserved hypothetical protein. Members are found	96.42
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	96.41
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.4
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	96.39
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.19
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	96.19
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.15
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	96.07
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.99
KOG2734	536	consensus Uncharacterized conserved protein [Funct	95.98
KOG0825	1134	consensus PHD Zn-finger protein [General function	95.88
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	95.86
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	95.84
KOG1001	674	consensus Helicase-like transcription factor HLTF/	95.79
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	95.75
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.63
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	95.62
COG1413	335	FOG: HEAT repeat [Energy production and conversion	95.61
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.53
KOG1242	569	consensus Protein containing adaptin N-terminal re	95.52
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	95.49
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	95.46
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	95.45
COG5109	396	Uncharacterized conserved protein, contains RING Z	95.4
KOG2259	823	consensus Uncharacterized conserved protein [Funct	95.39
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	95.35
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	95.24
PF05004	309	IFRD: Interferon-related developmental regulator (	95.22
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	95.2
KOG1242	569	consensus Protein containing adaptin N-terminal re	95.16
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	95.15
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	95.12
KOG0212	675	consensus Uncharacterized conserved protein [Funct	95.07
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	95.03
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.01
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	94.88
COG5369	743	Uncharacterized conserved protein [Function unknow	94.87
KOG1824	1233	consensus TATA-binding protein-interacting protein	94.85
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.84
COG5627	275	MMS21 DNA repair protein MMS21 [DNA replication, r	94.82
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	94.77
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.75
KOG4413	524	consensus 26S proteasome regulatory complex, subun	94.52
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.42
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	94.29
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	94.0
KOG4413	524	consensus 26S proteasome regulatory complex, subun	93.98
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	93.84
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	93.83
PF07814	361	WAPL: Wings apart-like protein regulation of heter	93.82
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.71
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	93.64
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	93.64
COG5219	1525	Uncharacterized conserved protein, contains RING Z	93.56
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	93.54
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	93.5
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	93.49
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	93.45
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.44
COG1413	335	FOG: HEAT repeat [Energy production and conversion	93.2
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	93.17
COG5175	480	MOT2 Transcriptional repressor [Transcription]	93.06
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	93.01
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	92.99
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	92.97
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	92.9
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.86
COG5096	757	Vesicle coat complex, various subunits [Intracellu	92.79
PF08045	257	CDC14: Cell division control protein 14, SIN compo	92.78
KOG2025	892	consensus Chromosome condensation complex Condensi	92.58
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	92.55
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	92.51
KOG3036	293	consensus Protein involved in cell differentiation	91.95
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	91.87
KOG0212	675	consensus Uncharacterized conserved protein [Funct	91.63
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	91.52
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	91.41
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	91.21
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	91.14
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	91.04
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	91.01
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	90.78
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	90.73
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	90.66
PF05004	309	IFRD: Interferon-related developmental regulator (	90.25
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	90.11
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	89.92
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	89.9
KOG1940	276	consensus Zn-finger protein [General function pred	89.58
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	89.52
KOG0298	1394	consensus DEAD box-containing helicase-like transc	89.47
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	89.17
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	89.02
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	88.68
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	88.58
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	88.51
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	88.39
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	88.31
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	88.21
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	87.74
PF08045	257	CDC14: Cell division control protein 14, SIN compo	87.7
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	87.67
KOG0396	389	consensus Uncharacterized conserved protein [Funct	87.67
KOG2259	823	consensus Uncharacterized conserved protein [Funct	87.56
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	87.56
KOG0825	1134	consensus PHD Zn-finger protein [General function	87.53
KOG4739	233	consensus Uncharacterized protein involved in syna	87.08
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	87.03
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	86.99
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	86.71
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	86.6
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	86.45
KOG3002	299	consensus Zn finger protein [General function pred	86.4
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	86.35
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	86.27
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	86.24
KOG1824	1233	consensus TATA-binding protein-interacting protein	86.21
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	86.17
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	85.89
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	85.87
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	85.73
PLN02195	977	cellulose synthase A	85.58
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	85.3
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	84.9
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	84.84
PLN02189	1040	cellulose synthase	84.81
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	84.75
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	84.65
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	84.17
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	83.06
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	82.69
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	82.31
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	82.09
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	82.07
PLN02436	1094	cellulose synthase A	82.02
PLN02638	1079	cellulose synthase A (UDP-forming), catalytic subu	81.73
KOG0567	289	consensus HEAT repeat-containing protein [General	81.58
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	81.58
PF04641	260	Rtf2: Rtf2 RING-finger	81.06
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	80.64
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	80.42
KOG0301	745	consensus Phospholipase A2-activating protein (con	80.11

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.93  E-value=3.1e-24  Score=239.61  Aligned_cols=262  Identities=15%  Similarity=0.180  Sum_probs=220.3

Q ss_pred             HHHHHHHHHHHhcC--Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhccccc
Q 036338           99 QDEVKDIIRVAISK--NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIE  175 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~--~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~  175 (408)
                      ...+..+++.|+++  +.+ +..|+..|+.++++++++|..|.+..|+||.|+.+|.+++ ..++++|+.+|.+|+.  +
T Consensus        12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~-~~vk~nAaaaL~nLS~--~   88 (2102)
T PLN03200         12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGT-LGAKVNAAAVLGVLCK--E   88 (2102)
T ss_pred             HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhc--C
Confidence            67899999999977  556 8999999999999999999999975599999999999876 3345999999999997  5


Q ss_pred             chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC---cchhhHHhhhcChHHHHHHhcccCC--CHHH
Q 036338          176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD---ADSKVKIAERDGLLAETVKSLSLDS--DRRL  250 (408)
Q Consensus       176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~---~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~  250 (408)
                      +++  +..|.  ..|+|++|+++|++| +.+.|++|+++|++|+.+   ++++..|+...|+||+|+.+|+++.  +..+
T Consensus        89 e~n--k~~Iv--~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L  163 (2102)
T PLN03200         89 EDL--RVKVL--LGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVV  163 (2102)
T ss_pred             HHH--HHHHH--HcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHH
Confidence            444  67777  799999999999999 999999999999999987   4456566655899999999999862  2235


Q ss_pred             HHHHHHHHHHhccCcchHHH-HHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HH
Q 036338          251 IEASLSCLITISSSKRAKTK-LINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQ  328 (408)
Q Consensus       251 ~~~A~~aL~~Ls~~~~n~~~-~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~  328 (408)
                      ++.|+.+|+|||.+.+|+.. ++++|+||.|+.+|+++                     ++..++.|+.+|.+++.+ ++
T Consensus       164 ~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~---------------------d~~lQ~eAa~aLa~Lass~ee  222 (2102)
T PLN03200        164 EGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG---------------------NSDAQANAASLLARLMMAFES  222 (2102)
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC---------------------CHHHHHHHHHHHHHHHcCChH
Confidence            67788999999999998865 46999999999999864                     789999999999888864 77


Q ss_pred             HHHHHHhhcCchHHHHHHHHH----------------------HHHHHHHhcCcHHHHHHHHhhcC--------CHHHHH
Q 036338          329 GRMEICQDAALLNGVVQKMLK----------------------TAQEAVSSSNVLTKILLLMQSNC--------TPAVRQ  378 (408)
Q Consensus       329 ~~~~~~~~~g~i~~lv~~l~~----------------------~~~~~~~~~g~~~~Ll~ll~~~~--------~~~~k~  378 (408)
                      .+..+++ +|+||.||++|.+                      +.++.+++.||++.|+.++.+..        +...++
T Consensus       223 ~~~aVIe-aGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe  301 (2102)
T PLN03200        223 SISKVLD-AGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQE  301 (2102)
T ss_pred             HHHHHHH-CCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHH
Confidence            8888887 5999999997633                      57778899999999999997432        244588


Q ss_pred             HHHHHHHHHhhc
Q 036338          379 MSADLLKIFRVN  390 (408)
Q Consensus       379 ~A~~lL~~l~~~  390 (408)
                      .|.++|..+..+
T Consensus       302 ~AvwALsNIcgg  313 (2102)
T PLN03200        302 NAMGALANICGG  313 (2102)
T ss_pred             HHHHHHHHHhCC
Confidence            888888887763

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.93  E-value=1.5e-23  Score=234.14  Aligned_cols=259  Identities=15%  Similarity=0.167  Sum_probs=215.4

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      .+.++.|++.|++++.. |..|++.|++++.++++++..|++. |+||+|+++|.+++ .+++++|+++|.||+.  +++
T Consensus       445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIiea-GaIP~LV~LL~s~~-~~iqeeAawAL~NLa~--~~~  520 (2102)
T PLN03200        445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAA-GGIPPLVQLLETGS-QKAKEDSATVLWNLCC--HSE  520 (2102)
T ss_pred             cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhC--CcH
Confidence            34688999999998877 9999999999999999999999999 99999999999876 3455999999999997  444


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh--------------------------------
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK--------------------------------  225 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~--------------------------------  225 (408)
                      + .+..|.  ++|+|++|+++|+++ +.+.|..|+++|.+|+.+.+..                                
T Consensus       521 q-ir~iV~--~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~  596 (2102)
T PLN03200        521 D-IRACVE--SAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVAS  596 (2102)
T ss_pred             H-HHHHHH--HCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Confidence            4 367776  789999999999999 9999999999999997433221                                


Q ss_pred             -----hHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCC
Q 036338          226 -----VKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGN  299 (408)
Q Consensus       226 -----~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~  299 (408)
                           .......|+++.|+++|+++ +...++.|+++|.+++.+. +++..++.+|+||+|+.+|++.            
T Consensus       597 ~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~------------  663 (2102)
T PLN03200        597 LEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN------------  663 (2102)
T ss_pred             hhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC------------
Confidence                 11112368999999999998 8899999999999998854 5678888999999999999863            


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHHHhC--CHHHHHHHHhhcCchHHHHHHHHH--------------------HHHHHHHh
Q 036338          300 GNGNGSGNGTVLITEKALRLVEILST--TKQGRMEICQDAALLNGVVQKMLK--------------------TAQEAVSS  357 (408)
Q Consensus       300 ~~~~~~~~~~~~~~~~a~~~L~~L~~--~~~~~~~~~~~~g~i~~lv~~l~~--------------------~~~~~~~~  357 (408)
                               +..++..|+++|.+|+.  .++++..++. .|+||+|+++|..                    +.+.++.+
T Consensus       664 ---------~~~v~keAA~AL~nL~~~~~~~q~~~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~  733 (2102)
T PLN03200        664 ---------TEAVATQSARALAALSRSIKENRKVSYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALA  733 (2102)
T ss_pred             ---------ChHHHHHHHHHHHHHHhCCCHHHHHHHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHh
Confidence                     67889999999999984  4556667776 5999999996533                    56777888


Q ss_pred             cCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          358 SNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       358 ~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      .|++++|+.+|+++. +..|+.|.++|..|..
T Consensus       734 ~~~I~~Lv~lLr~G~-~~~k~~Aa~AL~~L~~  764 (2102)
T PLN03200        734 EDIILPLTRVLREGT-LEGKRNAARALAQLLK  764 (2102)
T ss_pred             cCcHHHHHHHHHhCC-hHHHHHHHHHHHHHHh
Confidence            999999999998775 6678877777765554

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.1e-23  Score=204.97  Aligned_cols=261  Identities=13%  Similarity=0.204  Sum_probs=220.6

Q ss_pred             HHHHHHHHHHHhcCC-hh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIRVAISKN-ED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~-~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      .+.|+.+|+.|...+ +. +.+|+|+|.+++.+..+.-+.++++ |++|.++.+|.+++ ..+.|.|+++|+|++.   |
T Consensus       108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~a-gavp~fi~Ll~s~~-~~v~eQavWALgNIag---d  182 (514)
T KOG0166|consen  108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDA-GAVPIFIQLLSSPS-ADVREQAVWALGNIAG---D  182 (514)
T ss_pred             cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccC-CchHHHHHHhcCCc-HHHHHHHHHHHhcccc---C
Confidence            377899999998665 55 9999999999999999999999999 99999999999988 3344999999999995   6


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      ...+|..+.  +.|++++|+.++..........+++|+|.|||.+...-..+.....++|.|..+|++. |.++...|+|
T Consensus       183 s~~~Rd~vl--~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~-D~~Vl~Da~W  259 (514)
T KOG0166|consen  183 SPDCRDYVL--SCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST-DEEVLTDACW  259 (514)
T ss_pred             ChHHHHHHH--hhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence            666799998  9999999999999872347889999999999998754444443367899999999996 9999999999


Q ss_pred             HHHHhccCcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHh
Q 036338          257 CLITISSSKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQ  335 (408)
Q Consensus       257 aL~~Ls~~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  335 (408)
                      ||..|+.+...+..++ ++|++|.||++|..+                     +..++..|++++.|++...+.+.+.+.
T Consensus       260 AlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~---------------------~~~v~~PaLRaiGNIvtG~d~QTq~vi  318 (514)
T KOG0166|consen  260 ALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS---------------------SPKVVTPALRAIGNIVTGSDEQTQVVI  318 (514)
T ss_pred             HHHHHhcCChHHHHHHHHccchHHHHHHHcCC---------------------CcccccHHHhhccceeeccHHHHHHHH
Confidence            9999998766555555 999999999999864                     678889999999999998888888888


Q ss_pred             hcCchHHHHHHHHH----------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036338          336 DAALLNGVVQKMLK----------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFR  388 (408)
Q Consensus       336 ~~g~i~~lv~~l~~----------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~  388 (408)
                      ..|++|.|..+|.+                      +..++++++|.+|.|+.+|++......||+|+.+-.+.+
T Consensus       319 ~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts  393 (514)
T KOG0166|consen  319 NSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS  393 (514)
T ss_pred             hcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence            78999999987763                      477888999999999999998876666666655544443

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=4e-22  Score=185.86  Aligned_cols=254  Identities=19%  Similarity=0.245  Sum_probs=214.7

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchH
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQ  178 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~  178 (408)
                      .+..+.+.-++.+.- |..+...|.++.. ..++|+.++.+ |++|.||.++++++ +.|  +.+..++.|++.   +.-
T Consensus       168 aL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~a-G~lpvLVsll~s~d~dvq--yycttaisnIaV---d~~  240 (550)
T KOG4224|consen  168 ALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHA-GGLPVLVSLLKSGDLDVQ--YYCTTAISNIAV---DRR  240 (550)
T ss_pred             chhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhcc-CCchhhhhhhccCChhHH--HHHHHHhhhhhh---hHH
Confidence            344555544444444 8889999999976 47899999999 99999999999998 666  999999999987   433


Q ss_pred             HHHHHHhccCcc--cHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          179 HLMNLILKRDQD--CLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       179 ~~~~~i~~~~~g--~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      . |+.++  +.+  .++.||.+++++ +..+|..|..+|.+|+.+.++...|++ .|.+|.+|++|+++ .....-+.+.
T Consensus       241 ~-Rk~La--qaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~-~~plilasVa  314 (550)
T KOG4224|consen  241 A-RKILA--QAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSP-MGPLILASVA  314 (550)
T ss_pred             H-HHHHH--hcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCc-chhHHHHHHH
Confidence            3 66666  555  999999999999 999999999999999999999999998 89999999999987 6677788899


Q ss_pred             HHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHh
Q 036338          257 CLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQ  335 (408)
Q Consensus       257 aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~  335 (408)
                      +++|++.++.|-..|+++|.+.|||.+|+-                    .++.+++-.|..+|++|+. .+.++..|..
T Consensus       315 CIrnisihplNe~lI~dagfl~pLVrlL~~--------------------~dnEeiqchAvstLrnLAasse~n~~~i~e  374 (550)
T KOG4224|consen  315 CIRNISIHPLNEVLIADAGFLRPLVRLLRA--------------------GDNEEIQCHAVSTLRNLAASSEHNVSVIRE  374 (550)
T ss_pred             HHhhcccccCcccceecccchhHHHHHHhc--------------------CCchhhhhhHHHHHHHHhhhhhhhhHHHhh
Confidence            999999999999999999999999999985                    2456799999999999997 6778888877


Q ss_pred             hcCchHHHHHHHHH--------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          336 DAALLNGVVQKMLK--------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       336 ~~g~i~~lv~~l~~--------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      . |+||.+.++++.                    ..++...+.|.++.|+..+-+. +..+|.+|+.+|-.|+.
T Consensus       375 s-gAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss  446 (550)
T KOG4224|consen  375 S-GAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSS  446 (550)
T ss_pred             c-CchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhh
Confidence            5 999999997766                    3445567899999998877655 46689999888888887

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=4.7e-21  Score=189.61  Aligned_cols=260  Identities=14%  Similarity=0.171  Sum_probs=210.7

Q ss_pred             HHHHHHHHhcCChh-HHHHHHHHHHHhhh-ChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338          102 VKDIIRVAISKNED-FSENLTKIVAFAKE-SDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH  179 (408)
Q Consensus       102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~-~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~  179 (408)
                      ...+++.+.+.+.+ +..+...++.+... ....-..+... |+||.+|.+|...+....+.+|+++|.|++.  ++.++
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAs--gtse~  144 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIAS--GTSEQ  144 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhc--Cchhh
Confidence            56778888888887 88999998888543 22334566667 9999999999876645556999999999998  77776


Q ss_pred             HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338          180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI  259 (408)
Q Consensus       180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~  259 (408)
                      . +.++  ++|++|.|+.+|.++ +..+++.|+|+|+|++.+......++...|++++|+.++.........+.++|+|.
T Consensus       145 T-~~vv--~agavp~fi~Ll~s~-~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~Ls  220 (514)
T KOG0166|consen  145 T-KVVV--DAGAVPIFIQLLSSP-SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLS  220 (514)
T ss_pred             c-cccc--cCCchHHHHHHhcCC-cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHH
Confidence            3 4455  999999999999999 99999999999999999876555555559999999999998633478999999999


Q ss_pred             HhccCcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcC
Q 036338          260 TISSSKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAA  338 (408)
Q Consensus       260 ~Ls~~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g  338 (408)
                      |||.+..-...+. -..++|.|..+|.+.                     |..+...|+++|.+|++.+..+.+++.++|
T Consensus       221 Nlcrgk~P~P~~~~v~~iLp~L~~ll~~~---------------------D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~g  279 (514)
T KOG0166|consen  221 NLCRGKNPSPPFDVVAPILPALLRLLHST---------------------DEEVLTDACWALSYLTDGSNEKIQMVIDAG  279 (514)
T ss_pred             HHHcCCCCCCcHHHHHHHHHHHHHHHhcC---------------------CHHHHHHHHHHHHHHhcCChHHHHHHHHcc
Confidence            9999875333333 467899999999864                     999999999999999988777888877789


Q ss_pred             chHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          339 LLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       339 ~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      .+|.||.+|..                     ...+.+++.|+++.|..+|.....+.+|+.|.+++-.+..
T Consensus       280 vv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA  351 (514)
T KOG0166|consen  280 VVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA  351 (514)
T ss_pred             chHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence            99999997655                     4667889999999999999866666566656555555433

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=6.9e-22  Score=184.28  Aligned_cols=257  Identities=14%  Similarity=0.157  Sum_probs=223.0

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      .+.++..+..+++.++. +..|-.++.+++-. .+++..|++. +++.+|+.-.-++. ..|  ..++..+.||+.  .+
T Consensus        84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn-~enk~liv~l-~Gl~~Li~qmmtd~vevq--cnaVgCitnLaT--~d  157 (550)
T KOG4224|consen   84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVN-MENKGLIVSL-LGLDLLILQMMTDGVEVQ--CNAVGCITNLAT--FD  157 (550)
T ss_pred             hhhhhHHHHHHhCcchhhhhhhhhhhccceec-cCCceEEEec-cChHHHHHHhcCCCcEEE--eeehhhhhhhhc--cc
Confidence            45566777788888888 88888999999874 6888899999 77777665554444 444  999999999998  77


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      ++  |.-|.  ..|++.+|+++-++. +..+|.++..+|.+|....++|..++. .|++|.||.+++++ +++++..++.
T Consensus       158 ~n--k~kiA--~sGaL~pltrLaksk-dirvqrnatgaLlnmThs~EnRr~LV~-aG~lpvLVsll~s~-d~dvqyyctt  230 (550)
T KOG4224|consen  158 SN--KVKIA--RSGALEPLTRLAKSK-DIRVQRNATGALLNMTHSRENRRVLVH-AGGLPVLVSLLKSG-DLDVQYYCTT  230 (550)
T ss_pred             cc--hhhhh--hccchhhhHhhcccc-hhhHHHHHHHHHHHhhhhhhhhhhhhc-cCCchhhhhhhccC-ChhHHHHHHH
Confidence            77  56676  899999999977777 999999999999999999999999998 89999999999998 9999999999


Q ss_pred             HHHHhccCcchHHHHHhcC--cHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHH
Q 036338          257 CLITISSSKRAKTKLINHK--LITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEIC  334 (408)
Q Consensus       257 aL~~Ls~~~~n~~~~~~~G--~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~  334 (408)
                      ++.|++-...+|+.++++|  .||.||+|+.++                     ++.++-.|.-+|.||+.+.+-+..++
T Consensus       231 aisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~---------------------s~kvkcqA~lALrnlasdt~Yq~eiv  289 (550)
T KOG4224|consen  231 AISNIAVDRRARKILAQAEPKLVPALVDLMDDG---------------------SDKVKCQAGLALRNLASDTEYQREIV  289 (550)
T ss_pred             HhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC---------------------ChHHHHHHHHHHhhhcccchhhhHHH
Confidence            9999999999999999988  999999999864                     88999999999999999999999999


Q ss_pred             hhcCchHHHHHHHHH----------HHH----------HHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhhc
Q 036338          335 QDAALLNGVVQKMLK----------TAQ----------EAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVN  390 (408)
Q Consensus       335 ~~~g~i~~lv~~l~~----------~~~----------~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  390 (408)
                      + +|++|.+|++|..          .+.          ..|+++|.+.+|+.+|....++..|=.|...|+.|...
T Consensus       290 ~-ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas  364 (550)
T KOG4224|consen  290 E-AGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS  364 (550)
T ss_pred             h-cCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence            8 5999999996644          121          12468999999999999888888999999999999873

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.87  E-value=2.9e-21  Score=178.78  Aligned_cols=260  Identities=15%  Similarity=0.162  Sum_probs=215.8

Q ss_pred             CHHHHHHHHHHHhcCChh--HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccc
Q 036338           98 SQDEVKDIIRVAISKNED--FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKI  174 (408)
Q Consensus        98 ~~~~i~~Lv~~L~s~~~~--~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~  174 (408)
                      ..+.++.+|+.+.....+  +.+|+|+|-+++++...-.+.+++. |+||.++.+|.++. +++  +.++++|+|++-  
T Consensus       112 daGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~-~AVPlfiqlL~s~~~~V~--eQavWALGNiAG--  186 (526)
T COG5064         112 DAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDA-GAVPLFIQLLSSTEDDVR--EQAVWALGNIAG--  186 (526)
T ss_pred             hccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeC-CchHHHHHHHcCchHHHH--HHHHHHhccccC--
Confidence            467789999999766555  8999999999999877777788999 99999999999987 555  999999999995  


Q ss_pred             cchHHHHHHHhccCcccHHHHHHHHhcCC-ChHHHHHHHHHHHHhhcCc--chhhHHhhhcChHHHHHHhcccCCCHHHH
Q 036338          175 EDQQHLMNLILKRDQDCLNSLLLVLKQQE-SVDSRIESLRLLEFIAGDA--DSKVKIAERDGLLAETVKSLSLDSDRRLI  251 (408)
Q Consensus       175 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~-~~~~~~~Aa~~L~~La~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  251 (408)
                       |++.+|..+.  +.|++++++.+|.+.. +.....++.|.|.||+...  ...+.-.  ..++|.|.+++.+. |+++.
T Consensus       187 -DS~~~RD~vL--~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~-D~evl  260 (526)
T COG5064         187 -DSEGCRDYVL--QCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSR-DPEVL  260 (526)
T ss_pred             -CchhHHHHHH--hcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhc-CHHHH
Confidence             6666799998  9999999999998761 3477789999999999753  2223322  34699999999997 99999


Q ss_pred             HHHHHHHHHhccCcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHH
Q 036338          252 EASLSCLITISSSKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGR  330 (408)
Q Consensus       252 ~~A~~aL~~Ls~~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~  330 (408)
                      -.|.|||..|+..+..+..++ +.|.-+.||++|.++                     +..++.-|++.+.|+....+.+
T Consensus       261 vDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~---------------------sa~iqtPalR~vGNIVTG~D~Q  319 (526)
T COG5064         261 VDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE---------------------SAKIQTPALRSVGNIVTGSDDQ  319 (526)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc---------------------cccccCHHHHhhcCeeecCccc
Confidence            999999999999876655555 999999999999865                     7788999999999999888888


Q ss_pred             HHHHhhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          331 MEICQDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       331 ~~~~~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      .+++...|.++.+-.+|..                     +..+++++++.+|+|+.+|.+..-.-.|+++|.+..+.+.
T Consensus       320 TqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg  399 (526)
T COG5064         320 TQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG  399 (526)
T ss_pred             eehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            8887777999988775533                     6788899999999999999876656667777776665543

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.86  E-value=2.4e-22  Score=150.97  Aligned_cols=72  Identities=39%  Similarity=0.782  Sum_probs=63.0

Q ss_pred             CCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338           10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      +|++|+||||+++|+|||+++|||||||+||++|+..++.+||.|+++++..+++||..||+.|++|+.+|.
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~   72 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK   72 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence            589999999999999999999999999999999999878899999999999999999999999999999875

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.84  E-value=6e-20  Score=170.08  Aligned_cols=264  Identities=14%  Similarity=0.215  Sum_probs=218.0

Q ss_pred             CCccCHHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhc
Q 036338           94 PVVLSQDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLIL  171 (408)
Q Consensus        94 ~~~~~~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~  171 (408)
                      .++++.+.++.++++|.+++.+ +.+++|+|.+++.+++..|..+.+. |++++|+.+|.+.. +...++++.++|.||+
T Consensus       151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~-galeplL~ll~ss~~~ismlRn~TWtLSNlc  229 (526)
T COG5064         151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQC-GALEPLLGLLLSSAIHISMLRNATWTLSNLC  229 (526)
T ss_pred             EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhc-CchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence            4666788999999999999888 9999999999999999999999999 99999999999877 6778899999999999


Q ss_pred             ccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHH
Q 036338          172 NKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLI  251 (408)
Q Consensus       172 ~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  251 (408)
                      ..-...+. -..|    .-++|.|.+|+.+- ++++...|+|+|.+|+..+..+..+....|..+.||++|.++ +..++
T Consensus       230 RGknP~P~-w~~i----sqalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-sa~iq  302 (526)
T COG5064         230 RGKNPPPD-WSNI----SQALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQ  302 (526)
T ss_pred             CCCCCCCc-hHHH----HHHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-ccccc
Confidence            73222221 1223    25689999999998 999999999999999998866666555589999999999997 88899


Q ss_pred             HHHHHHHHHhccCcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHH
Q 036338          252 EASLSCLITISSSKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGR  330 (408)
Q Consensus       252 ~~A~~aL~~Ls~~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~  330 (408)
                      ..|++.+.|+..+.+....++ +.|+++++..+|+++                     ...++..|++++.|+......+
T Consensus       303 tPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~---------------------ke~irKEaCWTiSNITAGnteq  361 (526)
T COG5064         303 TPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP---------------------KENIRKEACWTISNITAGNTEQ  361 (526)
T ss_pred             CHHHHhhcCeeecCccceehheecccHHHHHHHhcCh---------------------hhhhhhhhheeecccccCCHHH
Confidence            999999999999877665555 999999999999876                     6699999999999998655555


Q ss_pred             HHHHhhcCchHHHHHHHHH------------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 036338          331 MEICQDAALLNGVVQKMLK------------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKI  386 (408)
Q Consensus       331 ~~~~~~~g~i~~lv~~l~~------------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~  386 (408)
                      .+.+.+++.+|+|+++|..                        +..+-.++.|.+.+|..+|....+ ++-+.+.+.++.
T Consensus       362 iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN-kiiev~LD~~en  440 (526)
T COG5064         362 IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN-KIIEVALDAIEN  440 (526)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc-cchhhhHHHHHH
Confidence            5555567999999997654                        455666889999999999865543 356666665554


Q ss_pred             H
Q 036338          387 F  387 (408)
Q Consensus       387 l  387 (408)
                      +
T Consensus       441 i  441 (526)
T COG5064         441 I  441 (526)
T ss_pred             H
Confidence            3

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.80  E-value=7.9e-18  Score=175.09  Aligned_cols=261  Identities=18%  Similarity=0.255  Sum_probs=208.5

Q ss_pred             CHHHHHHHHHHHhcCChhHHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc--ch------------------
Q 036338           98 SQDEVKDIIRVAISKNEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN--DV------------------  157 (408)
Q Consensus        98 ~~~~i~~Lv~~L~s~~~~~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~--~~------------------  157 (408)
                      +.+.+...++.|-...+++.++...|..+++. ++|-+.+++.+-.+..|.+.|+..-  +.                  
T Consensus       121 ~~~~~d~yiE~lYe~~~ek~~~~~~il~La~~-~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~  199 (708)
T PF05804_consen  121 SINDLDEYIELLYEDIPEKIRGTSLILQLARN-PENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQ  199 (708)
T ss_pred             CHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHH
Confidence            35677888888887656688899999999874 7777777766566677777764310  00                  


Q ss_pred             ----------------------------------------------------------------hhHHHHHHHHHHhccc
Q 036338          158 ----------------------------------------------------------------NMLKQVIRVLDLILNK  173 (408)
Q Consensus       158 ----------------------------------------------------------------~~~e~A~~~L~~L~~~  173 (408)
                                                                                      +.+..++.+|.||+. 
T Consensus       200 fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQeqLlrv~~~lLlNLAe-  278 (708)
T PF05804_consen  200 FHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQEQLLRVAFYLLLNLAE-  278 (708)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence                                                                            112235567888875 


Q ss_pred             ccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHH
Q 036338          174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEA  253 (408)
Q Consensus       174 ~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  253 (408)
                       +...  +..+.  +.|+|+.|+++|.++ +.+....++..|.+||...+||..|++ .|++++|++++.++ +.+++..
T Consensus       279 -d~~v--e~kM~--~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~ENK~~m~~-~giV~kL~kLl~s~-~~~l~~~  350 (708)
T PF05804_consen  279 -DPRV--ELKMV--NKGIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKENKDEMAE-SGIVEKLLKLLPSE-NEDLVNV  350 (708)
T ss_pred             -ChHH--HHHHH--hcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHhcCC-CHHHHHH
Confidence             2222  45555  899999999999999 999999999999999999999999998 89999999999987 8899999


Q ss_pred             HHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHH
Q 036338          254 SLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEI  333 (408)
Q Consensus       254 A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~  333 (408)
                      ++++|+|||.++++|..|++.|+||.|+.+|.++                       ..+..++.+|.+|+.++++|..+
T Consensus       351 aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~-----------------------~~~~val~iLy~LS~dd~~r~~f  407 (708)
T PF05804_consen  351 ALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP-----------------------NFREVALKILYNLSMDDEARSMF  407 (708)
T ss_pred             HHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC-----------------------chHHHHHHHHHHhccCHhhHHHH
Confidence            9999999999999999999999999999999753                       56678999999999999999988


Q ss_pred             HhhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhhcCc
Q 036338          334 CQDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYK  392 (408)
Q Consensus       334 ~~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~  392 (408)
                      ... +++|.++++|+.                     ...+.+.+.||++.|+.......       -.-+++++++   
T Consensus       408 ~~T-dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~-------D~lLlKlIRN---  476 (708)
T PF05804_consen  408 AYT-DCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTR-------DPLLLKLIRN---  476 (708)
T ss_pred             hhc-chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcc-------cHHHHHHHHH---
Confidence            875 899999998877                     56778888899999986654332       2346677777   


Q ss_pred             cccccccCcccc
Q 036338          393 SCLASYDTKTTH  404 (408)
Q Consensus       393 ~c~~~~~~~~~~  404 (408)
                        ++.++.++..
T Consensus       477 --iS~h~~~~k~  486 (708)
T PF05804_consen  477 --ISQHDGPLKE  486 (708)
T ss_pred             --HHhcCchHHH
Confidence              5566655443

>smart00504 Ubox Modified RING finger domain

Probab=99.75  E-value=1e-18  Score=127.88  Aligned_cols=63  Identities=49%  Similarity=0.832  Sum_probs=59.7

Q ss_pred             cccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHH
Q 036338           13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIW   76 (408)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~   76 (408)
                      +|.||||+++|+|||+++|||+||++||.+|+.. +.+||.|+++++..++++|..+++.|++|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            5789999999999999999999999999999986 66899999999999999999999999987

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.69  E-value=5.5e-15  Score=154.04  Aligned_cols=196  Identities=18%  Similarity=0.260  Sum_probs=170.2

Q ss_pred             HHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHH
Q 036338          119 NLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLV  198 (408)
Q Consensus       119 Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~l  198 (408)
                      +...|.+++.+ ..+...+++. |+|+.|+++|++.+ ...+..++..|.+|+.  ..++  +..+.  +.|+|++|+++
T Consensus       269 ~~~lLlNLAed-~~ve~kM~~~-~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi--~~EN--K~~m~--~~giV~kL~kL  339 (708)
T PF05804_consen  269 AFYLLLNLAED-PRVELKMVNK-GIVSLLVKCLDREN-EELLILAVTFLKKLSI--FKEN--KDEMA--ESGIVEKLLKL  339 (708)
T ss_pred             HHHHHHHHhcC-hHHHHHHHhc-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC--CHHH--HHHHH--HcCCHHHHHHH
Confidence            55567788764 7888889998 99999999998876 4455889999999987  6666  67777  89999999999


Q ss_pred             HhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHH
Q 036338          199 LKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLIT  278 (408)
Q Consensus       199 L~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~  278 (408)
                      +.++ +.+.+..+.++|.|||.+++.|..|.. .|++|.|+.+|.++   ..+..++.+|++||..+++|..+...++||
T Consensus       340 l~s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~-~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~TdcIp  414 (708)
T PF05804_consen  340 LPSE-NEDLVNVALRLLFNLSFDPELRSQMVS-LGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAYTDCIP  414 (708)
T ss_pred             hcCC-CHHHHHHHHHHHHHhCcCHHHHHHHHH-CCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhhcchHH
Confidence            9999 999999999999999999999999998 89999999999865   456779999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH
Q 036338          279 ELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK  349 (408)
Q Consensus       279 ~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~  349 (408)
                      .|+++|.+.                    .+..+...+++++.||+.++.+.+.+++ ++|++.|++..++
T Consensus       415 ~L~~~Ll~~--------------------~~~~v~~eliaL~iNLa~~~rnaqlm~~-g~gL~~L~~ra~~  464 (708)
T PF05804_consen  415 QLMQMLLEN--------------------SEEEVQLELIALLINLALNKRNAQLMCE-GNGLQSLMKRALK  464 (708)
T ss_pred             HHHHHHHhC--------------------CCccccHHHHHHHHHHhcCHHHHHHHHh-cCcHHHHHHHHHh
Confidence            999998652                    3556667789999999999999988887 5889999887665

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=4.7e-13  Score=124.51  Aligned_cols=261  Identities=15%  Similarity=0.229  Sum_probs=200.9

Q ss_pred             HHHHHHHHHHHhc--CChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhccccc
Q 036338           99 QDEVKDIIRVAIS--KNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIE  175 (408)
Q Consensus        99 ~~~i~~Lv~~L~s--~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~  175 (408)
                      ......++..|..  .+.+ -...+..++.-+-.++.||..+++. ++.+.+...|......+..++..+++..|..  +
T Consensus       144 a~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~-~il~Li~~~l~~~gk~~~VRel~~a~r~l~~--d  220 (461)
T KOG4199|consen  144 AEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMEL-KILELILQVLNREGKTRTVRELYDAIRALLT--D  220 (461)
T ss_pred             cccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHh-hHHHHHHHHHcccCccHHHHHHHHHHHHhcC--C
Confidence            3444455666543  3344 6677888888888899999999999 9999999888765522456777888887765  3


Q ss_pred             ch---------HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCC
Q 036338          176 DQ---------QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDS  246 (408)
Q Consensus       176 ~~---------~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~  246 (408)
                      |+         ++ .+.|.  +.|++..|++.|+-+-++.+...+..+|..|+..++.+..|.+ .|++..|++++.+..
T Consensus       221 DDiRV~fg~ah~h-Ar~ia--~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e-~GGl~tl~~~i~d~n  296 (461)
T KOG4199|consen  221 DDIRVVFGQAHGH-ARTIA--KEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAE-SGGLDTLLRCIDDSN  296 (461)
T ss_pred             CceeeecchhhHH-HHHHH--HhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhhc
Confidence            32         22 33455  7889999999999876889999999999999999999999999 899999999998742


Q ss_pred             CH---HHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q 036338          247 DR---RLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEIL  323 (408)
Q Consensus       247 ~~---~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L  323 (408)
                      +.   .+.+.++..|+.|+.++.++..|++.|+.+.++.++...                   ..++.+.+.++.++..|
T Consensus       297 ~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h-------------------~~~p~Vi~~~~a~i~~l  357 (461)
T KOG4199|consen  297 EQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH-------------------SDDPLVIQEVMAIISIL  357 (461)
T ss_pred             hhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc-------------------CCChHHHHHHHHHHHHH
Confidence            33   355778888999999999999999999999999998754                   56899999999999999


Q ss_pred             h-CCHHHHHHHHhhcCchHHHHHHHHH-----H--------HH---------HHHHhcCcHHHHHHHHhhcCCHHHHHHH
Q 036338          324 S-TTKQGRMEICQDAALLNGVVQKMLK-----T--------AQ---------EAVSSSNVLTKILLLMQSNCTPAVRQMS  380 (408)
Q Consensus       324 ~-~~~~~~~~~~~~~g~i~~lv~~l~~-----~--------~~---------~~~~~~g~~~~Ll~ll~~~~~~~~k~~A  380 (408)
                      + +.|++-+.+++ +|+-...|+.|-+     .        .+         ..+.=..|+..|+..-.+.. +..+..|
T Consensus       358 ~LR~pdhsa~~ie-~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h-~tce~~a  435 (461)
T KOG4199|consen  358 CLRSPDHSAKAIE-AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANH-ETCEAAA  435 (461)
T ss_pred             HhcCcchHHHHHh-cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcC-ccHHHHH
Confidence            8 58999999988 4777777887655     0        11         11222456788877666553 4457777


Q ss_pred             HHHHHHH
Q 036338          381 ADLLKIF  387 (408)
Q Consensus       381 ~~lL~~l  387 (408)
                      ..+||-|
T Consensus       436 kaALRDL  442 (461)
T KOG4199|consen  436 KAALRDL  442 (461)
T ss_pred             HHHHHhc
Confidence            7777765

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.52  E-value=3.1e-13  Score=138.37  Aligned_cols=205  Identities=16%  Similarity=0.184  Sum_probs=170.0

Q ss_pred             CHHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338           98 SQDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        98 ~~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      ...+++..+++|.+.++. |..|+.-|..++.++.+.|..+.+. |+|+.||.+|.+.. .+++..|+++|.||..+..+
T Consensus       231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrql-ggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~  308 (717)
T KOG1048|consen  231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQL-GGIPKLVALLDHRN-DEVQRQACGALRNLVFGKST  308 (717)
T ss_pred             cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHh-ccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCC
Confidence            345678889999988888 9999999999999999999999999 99999999999987 23449999999999863222


Q ss_pred             -hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCC---------
Q 036338          177 -QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDS---------  246 (408)
Q Consensus       177 -~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~---------  246 (408)
                       ++  +-.|.  +.++|+.++++|+...|.++++..+.+|+||+.++..|..|..  .+++.|..-+-.+.         
T Consensus       309 ~~N--Klai~--~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~  382 (717)
T KOG1048|consen  309 DSN--KLAIK--ELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT--SALSTLTDNVIIPHSGWEEEPAP  382 (717)
T ss_pred             ccc--chhhh--hcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHhhcccccccCCCCcc
Confidence             33  56676  8999999999999733999999999999999999888888875  36788877663221         


Q ss_pred             ----CHHHHHHHHHHHHHhcc-CcchHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 036338          247 ----DRRLIEASLSCLITISS-SKRAKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLV  320 (408)
Q Consensus       247 ----~~~~~~~A~~aL~~Ls~-~~~n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L  320 (408)
                          +..+...++++|+|+++ ..+.|++|.+ .|.|+.|+..++..               .+....+...+|+++.+|
T Consensus       383 ~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~---------------i~~~~~d~K~VENcvCil  447 (717)
T KOG1048|consen  383 RKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTA---------------IQKSDLDSKSVENCVCIL  447 (717)
T ss_pred             cccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHH---------------HHhccccchhHHHHHHHH
Confidence                25688999999999998 6779999995 89999999999852               122255889999999999


Q ss_pred             HHHhC
Q 036338          321 EILST  325 (408)
Q Consensus       321 ~~L~~  325 (408)
                      +||+.
T Consensus       448 RNLSY  452 (717)
T KOG1048|consen  448 RNLSY  452 (717)
T ss_pred             hhcCc
Confidence            99985

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.51  E-value=8.7e-15  Score=97.01  Aligned_cols=39  Identities=38%  Similarity=0.780  Sum_probs=31.4

Q ss_pred             ccCccccCCCceecCCCCcccHhhHHHHHhcCC---CCCCCc
Q 036338           16 CPISLDVMKSPVSLCTGVTYDRASIQRWLDSGN---NTCPAT   54 (408)
Q Consensus        16 Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~---~~CP~~   54 (408)
                      ||||+++|+|||+++|||+||++||++||+...   ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999999999999999999999998642   469987

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.47  E-value=4.4e-12  Score=117.95  Aligned_cols=195  Identities=14%  Similarity=0.189  Sum_probs=165.1

Q ss_pred             cCHHHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccc
Q 036338           97 LSQDEVKDIIRVAISK-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKI  174 (408)
Q Consensus        97 ~~~~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~  174 (408)
                      |+++.++.|+..|+.. ++. +..++.++.+.+. .+.++..|.+. |+++.+..+|.+++ .++.+.|+.+|.|++.  
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~-Ggi~lI~~lL~~p~-~~vr~~AL~aL~Nls~--   83 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDL-GGISLIGSLLNDPN-PSVREKALNALNNLSV--   83 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHc-CCHHHHHHHcCCCC-hHHHHHHHHHHHhcCC--
Confidence            5688999999999976 556 8899999999865 58999999999 99999999999987 3445999999999997  


Q ss_pred             cchHHHHHHHhccCcccHHHHHHHHhcC-CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHH
Q 036338          175 EDQQHLMNLILKRDQDCLNSLLLVLKQQ-ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEA  253 (408)
Q Consensus       175 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~-~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  253 (408)
                      ..++  +..|.    ..++.+++.+.+. .+.+.+..+.++|.+|+..++....+..   .++.|+.+|..| +..++..
T Consensus        84 ~~en--~~~Ik----~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~~G-~~~~k~~  153 (254)
T PF04826_consen   84 NDEN--QEQIK----MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLSSG-SEKTKVQ  153 (254)
T ss_pred             Chhh--HHHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHHcC-ChHHHHH
Confidence            4545  55563    3577777766553 2668889999999999999888888754   599999999998 8899999


Q ss_pred             HHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338          254 SLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT  326 (408)
Q Consensus       254 A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~  326 (408)
                      ++++|.|||.++.+...++.+.++..++.++..                    +.+..+...++....||..+
T Consensus       154 vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~--------------------~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  154 VLKVLVNLSENPDMTRELLSAQVLSSFLSLFNS--------------------SESKENLLRVLTFFENINEN  206 (254)
T ss_pred             HHHHHHHhccCHHHHHHHHhccchhHHHHHHcc--------------------CCccHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999976                    34678899999999999764

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.39  E-value=3.6e-11  Score=111.91  Aligned_cols=178  Identities=13%  Similarity=0.154  Sum_probs=149.0

Q ss_pred             hhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHH
Q 036338          137 LAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLE  216 (408)
Q Consensus       137 i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~  216 (408)
                      +.+. +-++.|+.+|++..++-.++.|+.++.+.+.  ...+  +..|.  +.|+++.+..+|.++ +..+|+.|..+|.
T Consensus         8 ~l~~-~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa--f~~n--q~~Ir--~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~   79 (254)
T PF04826_consen    8 ILEA-QELQKLLCLLESTEDPFIQEKALIALGNSAA--FPFN--QDIIR--DLGGISLIGSLLNDP-NPSVREKALNALN   79 (254)
T ss_pred             CcCH-HHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChhH--HHHHH--HcCCHHHHHHHcCCC-ChHHHHHHHHHHH
Confidence            3555 7789999999987655566999999999886  5555  78888  999999999999999 9999999999999


Q ss_pred             HhhcCcchhhHHhhhcChHHHHHHhccc-CCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCC
Q 036338          217 FIAGDADSKVKIAERDGLLAETVKSLSL-DSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGN  295 (408)
Q Consensus       217 ~La~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~  295 (408)
                      |++.+.+++..|-.   .++.+.+...+ ..+.+++.+++++|.||+..++.+..+.  +.|+.|+.+|.+.        
T Consensus        80 Nls~~~en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G--------  146 (254)
T PF04826_consen   80 NLSVNDENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSG--------  146 (254)
T ss_pred             hcCCChhhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcC--------
Confidence            99999999998853   47777775543 3467899999999999998887777665  4799999999863        


Q ss_pred             CCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH
Q 036338          296 GNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK  349 (408)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~  349 (408)
                                   +..++..++.+|.||+.++.....+... .+.+.++.++-+
T Consensus       147 -------------~~~~k~~vLk~L~nLS~np~~~~~Ll~~-q~~~~~~~Lf~~  186 (254)
T PF04826_consen  147 -------------SEKTKVQVLKVLVNLSENPDMTRELLSA-QVLSSFLSLFNS  186 (254)
T ss_pred             -------------ChHHHHHHHHHHHHhccCHHHHHHHHhc-cchhHHHHHHcc
Confidence                         6789999999999999999998888875 778888875433

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.37  E-value=3.1e-10  Score=105.96  Aligned_cols=245  Identities=13%  Similarity=0.209  Sum_probs=186.6

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHH
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNS  194 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~  194 (408)
                      -.+++..|..+...-++    +.+. -+...++.+|.... +..+....+..+..-+. -++-+  |+.+.  +.++++.
T Consensus       124 l~ksL~al~~lt~~qpd----l~da-~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~-~hE~n--rQ~~m--~~~il~L  193 (461)
T KOG4199|consen  124 LKKSLEAINSLTHKQPD----LFDA-EAMAVVLKLLALKVESEEVTLLTLQWLQKACI-MHEVN--RQLFM--ELKILEL  193 (461)
T ss_pred             HHHHHHHHHHhhcCCcc----hhcc-ccHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HhHHH--HHHHH--HhhHHHH
Confidence            66778888777665554    4455 67788888886655 33333444444444333 03444  67776  8999999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHhhcCcchh----------hHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccC
Q 036338          195 LLLVLKQQESVDSRIESLRLLEFIAGDADSK----------VKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSS  264 (408)
Q Consensus       195 Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~----------~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~  264 (408)
                      +...|...+...+-..+.+++..|..+++.|          ..|+. .|++..|++.++.+.+|.....+..+|..|+..
T Consensus       194 i~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  194 ILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH-hhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            9966654325667788899999998777655          34444 678899999999888899999999999999999


Q ss_pred             cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHH
Q 036338          265 KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVV  344 (408)
Q Consensus       265 ~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv  344 (408)
                      ++-.+.+++.|++..|+.++.+..       .          .....+...++..|+.|+.+++.+..|++. ||.+.++
T Consensus       273 ~E~C~~I~e~GGl~tl~~~i~d~n-------~----------~~~r~l~k~~lslLralAG~DsvKs~IV~~-gg~~~ii  334 (461)
T KOG4199|consen  273 DEICKSIAESGGLDTLLRCIDDSN-------E----------QGNRTLAKTCLSLLRALAGSDSVKSTIVEK-GGLDKII  334 (461)
T ss_pred             HHHHHHHHHccCHHHHHHHHhhhc-------h----------hhHHHHHHHHHHHHHHHhCCCchHHHHHHh-cChHHHH
Confidence            999999999999999999998740       0          123467788999999999999999999996 8999999


Q ss_pred             HHHHH-----------------------HHHHHHHhcCcHHHHHHHHhhcCC-HHHHHHHHHHHHHHhh
Q 036338          345 QKMLK-----------------------TAQEAVSSSNVLTKILLLMQSNCT-PAVRQMSADLLKIFRV  389 (408)
Q Consensus       345 ~~l~~-----------------------~~~~~~~~~g~~~~Ll~ll~~~~~-~~~k~~A~~lL~~l~~  389 (408)
                      .++++                       +....+++.|+-...++.|+.... ..+++.|..++|.+..
T Consensus       335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~  403 (461)
T KOG4199|consen  335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV  403 (461)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            98888                       455667889999999999987643 3556677778887765

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.35  E-value=4.7e-13  Score=116.69  Aligned_cols=61  Identities=23%  Similarity=0.448  Sum_probs=52.3

Q ss_pred             CCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhc---------------CCCCCCCcccccCCCCCcccH
Q 036338            7 YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS---------------GNNTCPATMQVLQSKEFVPNR   67 (408)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~---------------~~~~CP~~~~~l~~~~l~~n~   67 (408)
                      ..+..++|.||||.+.++|||+++|||.||+.||.+|+..               +...||.|+.+++..+++|.+
T Consensus        12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY   87 (193)
T ss_pred             eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence            3456788999999999999999999999999999999852               235799999999888888864

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.35  E-value=9.1e-13  Score=128.39  Aligned_cols=73  Identities=19%  Similarity=0.332  Sum_probs=65.4

Q ss_pred             CCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338            8 ITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      ..+...+.||||+++|.+||+++|||+||..||..|+.. ...||.|+.++....+.+|..+..+|+.|.....
T Consensus        21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R~   93 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLRP   93 (397)
T ss_pred             cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhhH
Confidence            457788999999999999999999999999999999985 4579999999888889999999999999976544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.31  E-value=8e-11  Score=120.87  Aligned_cols=186  Identities=14%  Similarity=0.158  Sum_probs=147.1

Q ss_pred             HHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-
Q 036338          144 VVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD-  221 (408)
Q Consensus       144 i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~-  221 (408)
                      +|-.+.+|.+.+ ..+  -+|..-|-.++.  .+ +..|..+.  +-|+|+.||.+|.+. +.+++.+|+++|.||... 
T Consensus       235 lpe~i~mL~~q~~~~q--snaaaylQHlcf--gd-~~ik~~vr--qlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~  306 (717)
T KOG1048|consen  235 LPEVISMLMSQDPSVQ--SNAAAYLQHLCF--GD-NKIKSRVR--QLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGK  306 (717)
T ss_pred             cHHHHHHHhccChhhh--HHHHHHHHHHHh--hh-HHHHHHHH--HhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhccc
Confidence            566788888766 444  888888999997  44 44577787  899999999999999 999999999999999864 


Q ss_pred             --cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCC
Q 036338          222 --ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGN  299 (408)
Q Consensus       222 --~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~  299 (408)
                        ++||..|.+ .++|+.|+++|+.-.|.++++..+++||||++++.-+..|+.. ++..|-+.+-.++.|=+.    +.
T Consensus       307 ~~~~NKlai~~-~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~----~~  380 (717)
T KOG1048|consen  307 STDSNKLAIKE-LNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEE----EP  380 (717)
T ss_pred             CCcccchhhhh-cCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCC----CC
Confidence              368888988 8899999999996448899999999999999997777777655 667777665444211111    10


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhhcCchHHHHHH
Q 036338          300 GNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQDAALLNGVVQK  346 (408)
Q Consensus       300 ~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g~i~~lv~~  346 (408)
                      ..   -...+..+...+.++|+|++. ..+.|+++.+..|.|..|+..
T Consensus       381 ~~---~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~  425 (717)
T KOG1048|consen  381 AP---RKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFS  425 (717)
T ss_pred             cc---cccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHH
Confidence            00   112357788999999999987 899999999988999999885

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.30  E-value=3.8e-11  Score=128.36  Aligned_cols=225  Identities=16%  Similarity=0.157  Sum_probs=180.7

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHH
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSL  195 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~L  195 (408)
                      |..|+.+|-+|..++..||..+-...|+++.+|.-|.+..+ .++.-...+|.||+. ..|.+ +++++.  +.|-+..|
T Consensus       368 RrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pe-eL~QV~AsvLRNLSW-RAD~n-mKkvLr--E~GsVtaL  442 (2195)
T KOG2122|consen  368 RRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPE-ELLQVYASVLRNLSW-RADSN-MKKVLR--ETGSVTAL  442 (2195)
T ss_pred             HHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChH-HHHHHHHHHHHhccc-ccccc-HHHHHH--hhhhHHHH
Confidence            67788899999999888999988777999999999988761 223556789999996 34544 488887  88988888


Q ss_pred             HHHHh-cCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccC---CCHHHHHHHHHHHHHhcc----Ccc
Q 036338          196 LLVLK-QQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLD---SDRRLIEASLSCLITISS----SKR  266 (408)
Q Consensus       196 v~lL~-~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~A~~aL~~Ls~----~~~  266 (408)
                      +..-- .. ...+......+|+||+.+. +||..|....|++..||.+|.-.   ......+.|-+.|+|.++    ...
T Consensus       443 a~~al~~~-kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~  521 (2195)
T KOG2122|consen  443 AACALRNK-KESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCED  521 (2195)
T ss_pred             HHHHHHhc-ccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccch
Confidence            76544 44 5567788899999998764 89999998899999999999742   245788999999999876    445


Q ss_pred             hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh-CCHHHHHHHHhhcCchHHHHH
Q 036338          267 AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILS-TTKQGRMEICQDAALLNGVVQ  345 (408)
Q Consensus       267 n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~-~~~~~~~~~~~~~g~i~~lv~  345 (408)
                      .|+.+.+...+..|+++|.+.                     +..++-+++++|+||+ ++++.++.+.++ |+++.|-.
T Consensus       522 yRQILR~~NCLq~LLQ~LKS~---------------------SLTiVSNaCGTLWNLSAR~p~DQq~LwD~-gAv~mLrn  579 (2195)
T KOG2122|consen  522 YRQILRRHNCLQTLLQHLKSH---------------------SLTIVSNACGTLWNLSARSPEDQQMLWDD-GAVPMLRN  579 (2195)
T ss_pred             HHHHHHHhhHHHHHHHHhhhc---------------------ceEEeecchhhhhhhhcCCHHHHHHHHhc-ccHHHHHH
Confidence            788888999999999999986                     7899999999999997 589888888886 99997777


Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHhh
Q 036338          346 KMLKTAQEAVSSSNVLTKILLLMQS  370 (408)
Q Consensus       346 ~l~~~~~~~~~~~g~~~~Ll~ll~~  370 (408)
                      ++.  .+..|+..|....|..+|..
T Consensus       580 LIh--SKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  580 LIH--SKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             HHh--hhhhhhhhhHHHHHHHHhcC
Confidence            443  44556666777777777643

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.30  E-value=4.6e-11  Score=97.95  Aligned_cols=114  Identities=18%  Similarity=0.235  Sum_probs=102.7

Q ss_pred             CcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc
Q 036338          188 DQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD-ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR  266 (408)
Q Consensus       188 ~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~  266 (408)
                      +.|+++.|+++|.++ +...+..++++|.+++.. ++.+..+.. .|+++.|+++|.++ ++.+++.|+++|++|+.+..
T Consensus         5 ~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           5 QAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            789999999999999 999999999999999998 677777776 79999999999997 89999999999999999874


Q ss_pred             -hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          267 -AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       267 -n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                       .+..+++.|+++.|+.+|.+.                     +..+++.++++|.+|+.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~---------------------~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSS---------------------NEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcC---------------------CHHHHHHHHHHHHHhhC
Confidence             566677899999999999863                     78999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=3.2e-11  Score=117.00  Aligned_cols=206  Identities=15%  Similarity=0.243  Sum_probs=161.5

Q ss_pred             hhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHH
Q 036338          158 NMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAE  237 (408)
Q Consensus       158 ~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~  237 (408)
                      +.+..|+..|.||+.   + -.+...+.  ....+..||+.|... +.+........|..|+...+||..+++ .|.++.
T Consensus       278 qLLrva~ylLlNlAe---d-~~~ElKMr--rkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~eNK~~M~~-~~iveK  349 (791)
T KOG1222|consen  278 QLLRVAVYLLLNLAE---D-ISVELKMR--RKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDENKIVMEQ-NGIVEK  349 (791)
T ss_pred             HHHHHHHHHHHHHhh---h-hhHHHHHH--HHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhccchHHHHh-ccHHHH
Confidence            345567888999985   2 21122233  778899999999998 899999999999999999999999998 899999


Q ss_pred             HHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Q 036338          238 TVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKAL  317 (408)
Q Consensus       238 Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  317 (408)
                      |++++... +++.+...+..|+||+....+|.+|++.|.+|.|+.+|.++                       .-..-|+
T Consensus       350 L~klfp~~-h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d-----------------------~~~~iA~  405 (791)
T KOG1222|consen  350 LLKLFPIQ-HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD-----------------------TKHGIAL  405 (791)
T ss_pred             HHHhcCCC-CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc-----------------------ccchhhh
Confidence            99999987 99999999999999999999999999999999999999864                       3446789


Q ss_pred             HHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHH
Q 036338          318 RLVEILSTTKQGRMEICQDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAV  376 (408)
Q Consensus       318 ~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~  376 (408)
                      .+|..++.++..+..+.-. .+|+.+.+.++.                     ...+-+.+..|+..|+..       ..
T Consensus       406 ~~lYh~S~dD~~K~MfayT-dci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~r-------a~  477 (791)
T KOG1222|consen  406 NMLYHLSCDDDAKAMFAYT-DCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMER-------AI  477 (791)
T ss_pred             hhhhhhccCcHHHHHHHHH-HHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHH-------Hh
Confidence            9999999888777777654 789988887766                     122333445555555422       23


Q ss_pred             HHHHHHHHHHHhhcCccccccccCcccc-cccC
Q 036338          377 RQMSADLLKIFRVNYKSCLASYDTKTTH-IMPF  408 (408)
Q Consensus       377 k~~A~~lL~~l~~~~~~c~~~~~~~~~~-~~~~  408 (408)
                      +-+-.-+++++++     +++++.+|+. |++|
T Consensus       478 k~~D~lLmK~vRn-----iSqHeg~tqn~Fidy  505 (791)
T KOG1222|consen  478 KSRDLLLMKVVRN-----ISQHEGATQNMFIDY  505 (791)
T ss_pred             cccchHHHHHHHH-----hhhccchHHHHHHHH
Confidence            4445567888888     7788888876 5554

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.29  E-value=1.6e-10  Score=123.63  Aligned_cols=247  Identities=13%  Similarity=0.120  Sum_probs=187.4

Q ss_pred             HH-HHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-----------chhhHHHHHHHHHHhcccccchHHHHHH
Q 036338          116 FS-ENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-----------DVNMLKQVIRVLDLILNKIEDQQHLMNL  183 (408)
Q Consensus       116 ~~-~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-----------~~~~~e~A~~~L~~L~~~~~~~~~~~~~  183 (408)
                      ++ .|+..|-.+..+ +++|..+-+. |++..+.+||.-..           ...+...|..+|.||..  +|.+. |..
T Consensus       314 ~lcaA~~~lMK~SFD-EEhR~aM~EL-G~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTF--GDv~N-Ka~  388 (2195)
T KOG2122|consen  314 QLCAALCTLMKLSFD-EEHRHAMNEL-GGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTF--GDVAN-KAT  388 (2195)
T ss_pred             hhHHHHHHHHHhhcc-HHHHHHHHHh-hhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccc--ccccc-hhh
Confidence            55 677777777764 8999999999 99999999885321           11244789999999998  66654 554


Q ss_pred             HhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 036338          184 ILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI  261 (408)
Q Consensus       184 i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L  261 (408)
                      + +...|+|+.+|..|.+. ..+...--+.+|.||+=..|  .|+.+-+ .|-+..|+...-........++.+.|||||
T Consensus       389 L-Cs~rgfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE-~GsVtaLa~~al~~~kEsTLKavLSALWNL  465 (2195)
T KOG2122|consen  389 L-CSQRGFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRE-TGSVTALAACALRNKKESTLKAVLSALWNL  465 (2195)
T ss_pred             h-hhhhhHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHh-hhhHHHHHHHHHHhcccchHHHHHHHHhhh
Confidence            4 34779999999999998 88888889999999996543  4455545 888888888654322546788999999999


Q ss_pred             ccC-cchHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC----CHHHHHHHHh
Q 036338          262 SSS-KRAKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST----TKQGRMEICQ  335 (408)
Q Consensus       262 s~~-~~n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~----~~~~~~~~~~  335 (408)
                      +.+ .+|+..|-. .|++..||.+|.-.-       +          .....+.|.|-+||.|.+.    ++..|+-+.+
T Consensus       466 SAHcteNKA~iCaVDGALaFLVg~LSY~~-------q----------s~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~  528 (2195)
T KOG2122|consen  466 SAHCTENKAEICAVDGALAFLVGTLSYEG-------Q----------SNTLAIIESAGGILRNVSSLIATCEDYRQILRR  528 (2195)
T ss_pred             hhcccccchhhhcccchHHHHHhhccccC-------C----------cchhhhhhcCccHHHHHHhHhhccchHHHHHHH
Confidence            885 579999995 899999999997530       0          2356889999999999764    5666666666


Q ss_pred             hcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          336 DAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       336 ~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      + +.+..|+++|-.                     +.++.+.+.|+++.|..++++...-...-.| .+|+.|-+
T Consensus       529 ~-NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSa-aALrNLln  601 (2195)
T KOG2122|consen  529 H-NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSA-AALRNLLN  601 (2195)
T ss_pred             h-hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHH-HHHHHHhc
Confidence            5 899999987644                     6788889999999999999876655444444 44554444

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.20  E-value=8.4e-12  Score=81.66  Aligned_cols=38  Identities=34%  Similarity=0.815  Sum_probs=33.0

Q ss_pred             ccCccccCCCc-eecCCCCcccHhhHHHHHhcCCCCCCCc
Q 036338           16 CPISLDVMKSP-VSLCTGVTYDRASIQRWLDSGNNTCPAT   54 (408)
Q Consensus        16 Cpi~~~~~~dP-v~~~cgh~f~r~cI~~~~~~~~~~CP~~   54 (408)
                      ||||.+.++|| |+++|||+||++||++|++. ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            89999999999 56799999999999999997 6789986

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.18  E-value=3.9e-10  Score=92.38  Aligned_cols=118  Identities=18%  Similarity=0.271  Sum_probs=99.1

Q ss_pred             hhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHH
Q 036338          136 FLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLL  215 (408)
Q Consensus       136 ~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L  215 (408)
                      .+++. |+++.|+.+|.+.+ ....+.++.+|.+++.  ..++. ...+.  +.|+++.|+.+|.++ +..++..++++|
T Consensus         2 ~~~~~-~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~--~~~~~-~~~~~--~~~~i~~l~~~l~~~-~~~v~~~a~~~L   73 (120)
T cd00020           2 AVIQA-GGLPALVSLLSSSD-ENVQREAAWALSNLSA--GNNDN-IQAVV--EAGGLPALVQLLKSE-DEEVVKAALWAL   73 (120)
T ss_pred             hHHHc-CChHHHHHHHHcCC-HHHHHHHHHHHHHHhc--CCHHH-HHHHH--HCCChHHHHHHHhCC-CHHHHHHHHHHH
Confidence            35677 99999999999876 3455999999999997  43343 45555  789999999999998 999999999999


Q ss_pred             HHhhcCcc-hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338          216 EFIAGDAD-SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS  263 (408)
Q Consensus       216 ~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~  263 (408)
                      .+|+.+.. .+..+.. .|+++.|++++.++ +..+++.++++|.+|+.
T Consensus        74 ~~l~~~~~~~~~~~~~-~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          74 RNLAAGPEDNKLIVLE-AGGVPKLVNLLDSS-NEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHccCcHHHHHHHHH-CCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence            99998875 4455555 89999999999987 88999999999999974

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.18  E-value=4.6e-08  Score=100.60  Aligned_cols=236  Identities=17%  Similarity=0.200  Sum_probs=184.5

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      +...+.|...|.++++. |.-+++.|..++..++.....+.+. +.++.++.+|.+++ ..+.+.|+.+|.+|+.  +..
T Consensus        76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~-~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~--~~~  151 (503)
T PF10508_consen   76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN-ELLPLIIQCLRDPD-LSVAKAAIKALKKLAS--HPE  151 (503)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc-cHHHHHHHHHcCCc-HHHHHHHHHHHHHHhC--Cch
Confidence            45566777788888887 8889999999998877777788888 99999999998877 3445999999999997  444


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                      .  -+.+.  +.+.+..|..++... +...|.++..++.+++...+.-..+....|+++.+++.|+++ |.-++.+++..
T Consensus       152 ~--~~~l~--~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-DiLvqlnalel  225 (503)
T PF10508_consen  152 G--LEQLF--DSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-DILVQLNALEL  225 (503)
T ss_pred             h--HHHHh--CcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc-cHHHHHHHHHH
Confidence            4  33454  778899999999987 888999999999999876554444444489999999999995 99999999999


Q ss_pred             HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCC-CC--CCCCC----------------------------CCC
Q 036338          258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNG-NG--NGNGN----------------------------GSG  306 (408)
Q Consensus       258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~-~~--~~~~~----------------------------~~~  306 (408)
                      |..|+..+.+...+.+.|+++.|+.++.+.     ..+. .+  ...|.                            -..
T Consensus       226 l~~La~~~~g~~yL~~~gi~~~L~~~l~~~-----~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~  300 (503)
T PF10508_consen  226 LSELAETPHGLQYLEQQGIFDKLSNLLQDS-----EEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLE  300 (503)
T ss_pred             HHHHHcChhHHHHHHhCCHHHHHHHHHhcc-----ccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhC
Confidence            999999989999999999999999999763     1111 11  00000                            122


Q ss_pred             CCCcchHHHHHHHHHHHhCCHHHHHHH-HhhcCchHHHHHHHHH
Q 036338          307 NGTVLITEKALRLVEILSTTKQGRMEI-CQDAALLNGVVQKMLK  349 (408)
Q Consensus       307 ~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~g~i~~lv~~l~~  349 (408)
                      +.|......|..+|..++.+.+|+..+ ...++.+..+++.+..
T Consensus       301 s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~  344 (503)
T PF10508_consen  301 SQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGD  344 (503)
T ss_pred             CCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHH
Confidence            456778899999999999999999999 5554566666665544

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.14  E-value=1e-08  Score=98.79  Aligned_cols=255  Identities=18%  Similarity=0.179  Sum_probs=180.2

Q ss_pred             HHHHHHHHhcC-ChhHHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhc-Cc-----chh-hHHHHHHHHHHhccc
Q 036338          102 VKDIIRVAISK-NEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSN-VN-----DVN-MLKQVIRVLDLILNK  173 (408)
Q Consensus       102 i~~Lv~~L~s~-~~~~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s-~~-----~~~-~~e~A~~~L~~L~~~  173 (408)
                      +..+++.+.+. .++..+-...+..-+.+++..+-.+++. |.++.++++++. .+     +.. ....+......|.. 
T Consensus       225 ~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~-gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlllt-  302 (604)
T KOG4500|consen  225 VFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQN-GLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLT-  302 (604)
T ss_pred             HHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhc-chHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhc-
Confidence            33455555443 2333344444444555688999999999 999999999977 22     111 12223333333443 


Q ss_pred             ccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhccc----CCCHH
Q 036338          174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSL----DSDRR  249 (408)
Q Consensus       174 ~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~  249 (408)
                       +| ++++.+..  +...+..++..+++. +......++.+|+|++..++++..+++ .|++..|+++|..    +.+.+
T Consensus       303 -GD-eSMq~L~~--~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~  376 (604)
T KOG4500|consen  303 -GD-ESMQKLHA--DPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVE  376 (604)
T ss_pred             -Cc-hHHHHHhc--CcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccch
Confidence             34 44456554  455899999999999 999999999999999999999999998 8999999999853    13778


Q ss_pred             HHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHH
Q 036338          250 LIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQG  329 (408)
Q Consensus       250 ~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~  329 (408)
                      .+.+++.||+||.....|+..++.+|++.+++..+...                     .+.++.+-++.|+.+....+ 
T Consensus       377 ~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~---------------------~ppv~fkllgTlrM~~d~qe-  434 (604)
T KOG4500|consen  377 RQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLA---------------------SPPVTFKLLGTLRMIRDSQE-  434 (604)
T ss_pred             hHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhc---------------------CCcchHHHHHHHHHHHhchH-
Confidence            99999999999999999999999999999999999864                     78999999999999866443 


Q ss_pred             HHHHHhhcCchHHHHHHHHH----------------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHH
Q 036338          330 RMEICQDAALLNGVVQKMLK----------------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSA  381 (408)
Q Consensus       330 ~~~~~~~~g~i~~lv~~l~~----------------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~  381 (408)
                        .+..+-+--|.+++.|..                            ++...+.+.|++..++.++.+..-. .+..|-
T Consensus       435 --~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~-mqnEal  511 (604)
T KOG4500|consen  435 --YIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHIN-MQNEAL  511 (604)
T ss_pred             --HHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHH-HhHHHH
Confidence              222222333445554444                            3445566889888888877665433 344444


Q ss_pred             HHHHHHhh
Q 036338          382 DLLKIFRV  389 (408)
Q Consensus       382 ~lL~~l~~  389 (408)
                      .+|-.+..
T Consensus       512 Val~~~~~  519 (604)
T KOG4500|consen  512 VALLSTES  519 (604)
T ss_pred             HHHHHHHH
Confidence            44444443

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=99.11  E-value=3e-11  Score=79.94  Aligned_cols=36  Identities=25%  Similarity=0.624  Sum_probs=23.4

Q ss_pred             ccCccccCCC----ceecCCCCcccHhhHHHHHhcC---CCCCC
Q 036338           16 CPISLDVMKS----PVSLCTGVTYDRASIQRWLDSG---NNTCP   52 (408)
Q Consensus        16 Cpi~~~~~~d----Pv~~~cgh~f~r~cI~~~~~~~---~~~CP   52 (408)
                      ||||.+ |.+    |++++|||+||++||+++++.+   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 999    9999999999999999999864   35687

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=99.08  E-value=4.9e-11  Score=110.38  Aligned_cols=69  Identities=17%  Similarity=0.384  Sum_probs=62.0

Q ss_pred             CCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhc
Q 036338           11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSV   80 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~   80 (408)
                      ..-++|-||.++|+-||+++||||||.-||.+++.. ++.||.|..+++..+|+.|+.+..+|+.|....
T Consensus        21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R   89 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNFAR   89 (442)
T ss_pred             HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHHHH
Confidence            345899999999999999999999999999999984 677999999999999999999999999885543

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.07  E-value=9.5e-11  Score=77.61  Aligned_cols=39  Identities=38%  Similarity=0.906  Sum_probs=35.8

Q ss_pred             ccCccccCCCce-ecCCCCcccHhhHHHHHh-cCCCCCCCc
Q 036338           16 CPISLDVMKSPV-SLCTGVTYDRASIQRWLD-SGNNTCPAT   54 (408)
Q Consensus        16 Cpi~~~~~~dPv-~~~cgh~f~r~cI~~~~~-~~~~~CP~~   54 (408)
                      ||||.+.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 889999999999999998 456779987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=99.06  E-value=6.4e-11  Score=83.63  Aligned_cols=59  Identities=27%  Similarity=0.527  Sum_probs=33.7

Q ss_pred             CcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHH
Q 036338           12 SFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLI   73 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I   73 (408)
                      +-+.|++|.++|++||.+ .|.|.||+.||.+.+..   .||+|+.|-...|++-|+.|.++|
T Consensus         6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred             HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence            457899999999999976 79999999999886653   399999988788999999988765

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=99.03  E-value=9.1e-11  Score=82.88  Aligned_cols=45  Identities=27%  Similarity=0.678  Sum_probs=32.0

Q ss_pred             CCcccccCccccCCCceec-CCCCcccHhhHHHHHhc-CCCCCCCcc
Q 036338           11 PSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDS-GNNTCPATM   55 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~-~~~~CP~~~   55 (408)
                      ...++||||++.|+|||+. .|||+|+|++|.+|+.+ +...||+.+
T Consensus         9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen    9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            3458999999999999986 79999999999999954 345799954

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.98  E-value=2.3e-07  Score=95.45  Aligned_cols=210  Identities=15%  Similarity=0.188  Sum_probs=167.1

Q ss_pred             HHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHH
Q 036338          105 IIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNL  183 (408)
Q Consensus       105 Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~  183 (408)
                      +...|.+.+.+ -..+...|..+.... ... .+ .. +..+.|...|.+++ ..+++.++..|.++..  +.+.. ...
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~-~l-~~-~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~--~~~~~-~~~  114 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSAL-SPD-SL-LP-QYQPFLQRGLTHPS-PKVRRLALKQLGRIAR--HSEGA-AQL  114 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhcc-CHH-HH-HH-HHHHHHHHHhcCCC-HHHHHHHHHHHHHHhc--CCHHH-HHH
Confidence            66777777666 334555666665532 222 22 23 77888999998877 3445999999999876  44442 455


Q ss_pred             HhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338          184 ILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS  263 (408)
Q Consensus       184 i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~  263 (408)
                      +.  +.+.++.++..|.++ +.++...|+.+|.+|+..+.....+.. .+.+..|..++... +..++-.+..++.+++.
T Consensus       115 ~~--~~~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l~~-~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~  189 (503)
T PF10508_consen  115 LV--DNELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQLFD-SNLLSKLKSLMSQS-SDIVRCRVYELLVEIAS  189 (503)
T ss_pred             hc--CccHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHHhC-cchHHHHHHHHhcc-CHHHHHHHHHHHHHHHh
Confidence            65  899999999999999 999999999999999999888887876 67799999999885 66788889999999987


Q ss_pred             Ccc-hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHH
Q 036338          264 SKR-AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNG  342 (408)
Q Consensus       264 ~~~-n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~  342 (408)
                      ..+ ......+.|.++.++..|.++                     |.-++..++.+|..|+.++.+...+... |.++.
T Consensus       190 ~S~~~~~~~~~sgll~~ll~eL~~d---------------------DiLvqlnalell~~La~~~~g~~yL~~~-gi~~~  247 (503)
T PF10508_consen  190 HSPEAAEAVVNSGLLDLLLKELDSD---------------------DILVQLNALELLSELAETPHGLQYLEQQ-GIFDK  247 (503)
T ss_pred             cCHHHHHHHHhccHHHHHHHHhcCc---------------------cHHHHHHHHHHHHHHHcChhHHHHHHhC-CHHHH
Confidence            655 555555899999999999854                     8899999999999999999999988885 99999


Q ss_pred             HHHHHHH
Q 036338          343 VVQKMLK  349 (408)
Q Consensus       343 lv~~l~~  349 (408)
                      |++++.+
T Consensus       248 L~~~l~~  254 (503)
T PF10508_consen  248 LSNLLQD  254 (503)
T ss_pred             HHHHHhc
Confidence            9997655

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=2e-07  Score=95.62  Aligned_cols=247  Identities=14%  Similarity=0.199  Sum_probs=195.7

Q ss_pred             HHHHHHHHHHHhcCCh-h-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccccc
Q 036338           99 QDEVKDIIRVAISKNE-D-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIE  175 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~-~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~  175 (408)
                      .+.|+.|+.++.++.. + |..|+..|..+++   .+|..+..  -|.++|+..|..+. +......++.++.++..  +
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga--~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~--~   93 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA--QGMKPLIQVLQRDYMDPEIIKYALDTLLILTS--H   93 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH--cccHHHHHHHhhccCCHHHHHHHHHHHHHHHh--c
Confidence            6789999999987753 4 9999999999976   57877776  46899999999877 77778899999999876  4


Q ss_pred             ch------HH----------HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC--cchhhHHhhhcChHHH
Q 036338          176 DQ------QH----------LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD--ADSKVKIAERDGLLAE  237 (408)
Q Consensus       176 ~~------~~----------~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~--~~~~~~i~~~~g~i~~  237 (408)
                      ++      +.          ....|.  ..+.|..|+..+..- +-.+|..+..+|..+-..  .+.+..+...+-+|..
T Consensus        94 dd~~~v~dds~qsdd~g~~iae~fik--~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~  170 (970)
T KOG0946|consen   94 DDSPEVMDDSTQSDDLGLWIAEQFIK--NQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISK  170 (970)
T ss_pred             CcchhhcccchhhhHHHHHHHHHHHc--CchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHH
Confidence            42      11          122455  789999999999998 999999999999988554  4677777777889999


Q ss_pred             HHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHH
Q 036338          238 TVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKA  316 (408)
Q Consensus       238 Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  316 (408)
                      |+.+|.+. -...|..|.-.|..|.....+..+++. ..++..|..++...    |.             .+...+++.+
T Consensus       171 lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE----Gg-------------~dGgIVveDC  232 (970)
T KOG0946|consen  171 LMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE----GG-------------LDGGIVVEDC  232 (970)
T ss_pred             HHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc----CC-------------CCCcchHHHH
Confidence            99999985 556888899999999999999999996 78999999999864    10             1133899999


Q ss_pred             HHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHH----------------------------------------HHHHHH
Q 036338          317 LRLVEILSTT-KQGRMEICQDAALLNGVVQKMLK----------------------------------------TAQEAV  355 (408)
Q Consensus       317 ~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~----------------------------------------~~~~~~  355 (408)
                      +-.|.||-.. ..|+.-+.+ ++-||.|.++|.-                                        .++..+
T Consensus       233 L~ll~NLLK~N~SNQ~~FrE-~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l  311 (970)
T KOG0946|consen  233 LILLNNLLKNNISNQNFFRE-GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKAL  311 (970)
T ss_pred             HHHHHHHHhhCcchhhHHhc-cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            9999999874 556665554 5889988864422                                        456678


Q ss_pred             HhcCcHHHHHHHHhhcCCH
Q 036338          356 SSSNVLTKILLLMQSNCTP  374 (408)
Q Consensus       356 ~~~g~~~~Ll~ll~~~~~~  374 (408)
                      .+.+++..|+.++.+.+.|
T Consensus       312 ~ss~ll~~Lc~il~~~~vp  330 (970)
T KOG0946|consen  312 VSSHLLDVLCTILMHPGVP  330 (970)
T ss_pred             HHcchHHHHHHHHcCCCCc
Confidence            8899999999988776433

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.94  E-value=6e-10  Score=77.12  Aligned_cols=47  Identities=23%  Similarity=0.398  Sum_probs=40.6

Q ss_pred             CcccccCccccCCCceecCCCCc-ccHhhHHHHHhcCCCCCCCcccccC
Q 036338           12 SFFRCPISLDVMKSPVSLCTGVT-YDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      +++.|+||.+.+.++++.+|||. ||..|+.+|+. ....||.|++++.
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence            46789999999999999999999 99999999998 5678999998864

...

>PRK09687 putative lyase; Provisional

Probab=98.92  E-value=7.4e-08  Score=91.48  Aligned_cols=217  Identities=12%  Similarity=0.072  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      +..+..+...+++.++. |..|++.|..+......      .. -+++.|..++..+.+..+...|+.+|+++..  ...
T Consensus        53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~~-~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~--~~~  123 (280)
T PRK09687         53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------QD-NVFNILNNLALEDKSACVRASAINATGHRCK--KNP  123 (280)
T ss_pred             chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------hH-HHHHHHHHHHhcCCCHHHHHHHHHHHhcccc--ccc
Confidence            34455666667777776 88888888887432110      11 3577777775444334455889999988754  121


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                      .      .  ...+++.+...+.+. +..+|..|+.+|..+.          . ..+++.|+.+|++. ++.++..|+.+
T Consensus       124 ~------~--~~~a~~~l~~~~~D~-~~~VR~~a~~aLg~~~----------~-~~ai~~L~~~L~d~-~~~VR~~A~~a  182 (280)
T PRK09687        124 L------Y--SPKIVEQSQITAFDK-STNVRFAVAFALSVIN----------D-EAAIPLLINLLKDP-NGDVRNWAAFA  182 (280)
T ss_pred             c------c--chHHHHHHHHHhhCC-CHHHHHHHHHHHhccC----------C-HHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence            1      0  223456677777777 8899999999986542          2 45789999999987 88999999999


Q ss_pred             HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhc
Q 036338          258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDA  337 (408)
Q Consensus       258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~  337 (408)
                      |..+....        ..+++.|+.+|.++                     +..++..|+.+|..+-.           .
T Consensus       183 Lg~~~~~~--------~~~~~~L~~~L~D~---------------------~~~VR~~A~~aLg~~~~-----------~  222 (280)
T PRK09687        183 LNSNKYDN--------PDIREAFVAMLQDK---------------------NEEIRIEAIIGLALRKD-----------K  222 (280)
T ss_pred             HhcCCCCC--------HHHHHHHHHHhcCC---------------------ChHHHHHHHHHHHccCC-----------h
Confidence            99984322        24778899999754                     88999999999988643           2


Q ss_pred             CchHHHHHHHHH-----HHHHHHH---hcCcHHHHHHHHhhcCCHHHHHHHHHHHH
Q 036338          338 ALLNGVVQKMLK-----TAQEAVS---SSNVLTKILLLMQSNCTPAVRQMSADLLK  385 (408)
Q Consensus       338 g~i~~lv~~l~~-----~~~~~~~---~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~  385 (408)
                      .++|.|++.|-.     .+.+++-   ..-+++.|..++....++.++.+|.+.|+
T Consensus       223 ~av~~Li~~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        223 RVLSVLIKELKKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             hHHHHHHHHHcCCchHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence            456767765432     2333332   34567888888876668888999866654

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=6.8e-10  Score=106.88  Aligned_cols=76  Identities=25%  Similarity=0.433  Sum_probs=63.2

Q ss_pred             CCCcCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338            3 RDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus         3 ~~~~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      .........+++.||||.+.|++|++++|||+||+.||..+|. ....||.|+. .. ..+.+|..+..+++.+...+.
T Consensus         3 ~~~~~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~-~~~~~n~~l~~~~~~~~~~~~   78 (386)
T KOG2177|consen    3 SAALLEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PS-RNLRPNVLLANLVERLRQLRL   78 (386)
T ss_pred             chhhhhhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-ch-hccCccHHHHHHHHHHHhcCC
Confidence            3444556778999999999999999999999999999999998 6678999995 22 277799999998888876544

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=6.2e-10  Score=94.63  Aligned_cols=53  Identities=30%  Similarity=0.581  Sum_probs=44.6

Q ss_pred             CcccccCccccCCC--ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc
Q 036338           12 SFFRCPISLDVMKS--PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP   65 (408)
Q Consensus        12 ~~~~Cpi~~~~~~d--Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~   65 (408)
                      .-|.||||++-++.  ||.+.|||.||+.||++.++.+ ..||.|++.++.+.+.+
T Consensus       130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~r  184 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFHR  184 (187)
T ss_pred             cccCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhee
Confidence            34899999999987  6778999999999999999864 46999999887766543

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1.1e-09  Score=97.37  Aligned_cols=56  Identities=29%  Similarity=0.597  Sum_probs=49.8

Q ss_pred             CcccccCccccCCCceecCCCCcccHhhHHHHHhc--CCCCCCCcccccCCCCCcccH
Q 036338           12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS--GNNTCPATMQVLQSKEFVPNR   67 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~--~~~~CP~~~~~l~~~~l~~n~   67 (408)
                      ..|-|-||++.-+|||++.|||-||=.||.+|+..  +...||+|+..++.+.++|-+
T Consensus        46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY  103 (230)
T KOG0823|consen   46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY  103 (230)
T ss_pred             CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence            56999999999999999999999999999999875  345699999999888888854

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.84  E-value=2.2e-09  Score=97.90  Aligned_cols=49  Identities=16%  Similarity=0.291  Sum_probs=40.8

Q ss_pred             CCCcccccCccccCCCc--------eecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338           10 VPSFFRCPISLDVMKSP--------VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dP--------v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      ..++..||||++.+.+|        ++.+|||.||+.||.+|... ..+||.||.++.
T Consensus       171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~  227 (238)
T PHA02929        171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence            34567899999988764        55689999999999999874 668999998764

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.83  E-value=2.8e-09  Score=71.55  Aligned_cols=43  Identities=42%  Similarity=0.879  Sum_probs=38.7

Q ss_pred             cccCccccCCCceecC-CCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338           15 RCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSGNNTCPATMQV   57 (408)
Q Consensus        15 ~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~~~~CP~~~~~   57 (408)
                      .|+||.+.+.+|+.+. |||.||..|+.+|+..+...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            4999999999999886 999999999999998767789999864

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.83  E-value=1.4e-09  Score=73.18  Aligned_cols=40  Identities=38%  Similarity=0.832  Sum_probs=33.9

Q ss_pred             cccCccccCC---CceecCCCCcccHhhHHHHHhcCCCCCCCcc
Q 036338           15 RCPISLDVMK---SPVSLCTGVTYDRASIQRWLDSGNNTCPATM   55 (408)
Q Consensus        15 ~Cpi~~~~~~---dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~   55 (408)
                      .||||++.|.   .++.++|||.|+++||.+|++. +.+||.||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            5999999994   4667799999999999999987 46899996

...

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.83  E-value=1.9e-09  Score=98.01  Aligned_cols=70  Identities=17%  Similarity=0.246  Sum_probs=60.0

Q ss_pred             CCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338           11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      ..-+.|-||.+.++-|+.++||||||.-||..++.+ .+.||.|+.+.+..-++.+.-++..++.+.....
T Consensus        23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r~   92 (391)
T COG5432          23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHARNRD   92 (391)
T ss_pred             hhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhhccH
Confidence            345789999999999999999999999999999985 6679999998877778888888888887766544

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.81  E-value=6.1e-07  Score=86.71  Aligned_cols=261  Identities=14%  Similarity=0.197  Sum_probs=181.2

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc------chhhHHHHHHHHHHhc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN------DVNMLKQVIRVLDLIL  171 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~------~~~~~e~A~~~L~~L~  171 (408)
                      .+.++.|.+...|.+.+ -.+.-+.|.+++.++.++|..+-+. |+-..++++|+.-.      ..+...-+.+.|.|..
T Consensus        86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~l-gGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~  164 (604)
T KOG4500|consen   86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNL-GGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI  164 (604)
T ss_pred             HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhc-CCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence            44556666666666666 7788899999999999999999999 99888888887643      2244445667888876


Q ss_pred             ccccchHHHHHHHhccCcccHHHHHHHHhc---------------------------------------------CCChH
Q 036338          172 NKIEDQQHLMNLILKRDQDCLNSLLLVLKQ---------------------------------------------QESVD  206 (408)
Q Consensus       172 ~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~---------------------------------------------~~~~~  206 (408)
                      .   +...++..+.  +.|+++.|+.++.-                                             .-+++
T Consensus       165 l---~~~~l~aq~~--~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d  239 (604)
T KOG4500|consen  165 L---DSRELRAQVA--DAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVRED  239 (604)
T ss_pred             C---CcHHHHHHHH--hcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccc
Confidence            5   3333455555  78888766544421                                             11222


Q ss_pred             HHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCC-------HHHHHHHHHHHHHhccCcchHHHHHhcC-cHH
Q 036338          207 SRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSD-------RRLIEASLSCLITISSSKRAKTKLINHK-LIT  278 (408)
Q Consensus       207 ~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-------~~~~~~A~~aL~~Ls~~~~n~~~~~~~G-~i~  278 (408)
                      .++-...+|...+.++..|..+++ .|.++.++.+++.-.+       ....+.++....-|..+++.-..+.+.| .+.
T Consensus       240 ~~eM~feila~~aend~Vkl~la~-~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~  318 (604)
T KOG4500|consen  240 IDEMIFEILAKAAENDLVKLSLAQ-NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLD  318 (604)
T ss_pred             hhhHHHHHHHHHhcCcceeeehhh-cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHH
Confidence            223334445555666777777777 7889999999876212       1223334444444566777777777666 778


Q ss_pred             HHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH---------
Q 036338          279 ELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK---------  349 (408)
Q Consensus       279 ~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~---------  349 (408)
                      .++.-+.|.                     +......+.-++.|+++.+++...+++. +.+..|++.|.+         
T Consensus       319 ~~~sw~~S~---------------------d~~l~t~g~LaigNfaR~D~~ci~~v~~-~~~nkL~~~l~~~~~vdgnV~  376 (604)
T KOG4500|consen  319 FLESWFRSD---------------------DSNLITMGSLAIGNFARRDDICIQLVQK-DFLNKLISCLMQEKDVDGNVE  376 (604)
T ss_pred             HHHHHhcCC---------------------chhHHHHHHHHHHhhhccchHHHHHHHH-HHHHHHHHHHHHhcCCCccch
Confidence            888888753                     7788899999999999999999999997 888888888777         


Q ss_pred             ----------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          350 ----------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       350 ----------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                                      ..+..++.+|....++..+.....| +..+--..||+++.
T Consensus       377 ~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~pp-v~fkllgTlrM~~d  431 (604)
T KOG4500|consen  377 RQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPP-VTFKLLGTLRMIRD  431 (604)
T ss_pred             hHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCc-chHHHHHHHHHHHh
Confidence                            2445567899999998888877655 45555555665554

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=8.4e-08  Score=93.61  Aligned_cols=260  Identities=14%  Similarity=0.152  Sum_probs=180.0

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      ..-+.-||+.|..++.+ -.-...-|..++- -.+|+..+.+. |.|+.|+++..... +......+..|.|++.   |.
T Consensus       303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~-~iveKL~klfp~~h-~dL~~~tl~LlfNlSF---D~  376 (791)
T KOG1222|consen  303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQN-GIVEKLLKLFPIQH-PDLRKATLMLLFNLSF---DS  376 (791)
T ss_pred             HhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhc-cHHHHHHHhcCCCC-HHHHHHHHHHhhhccc---cc
Confidence            34455677777766655 3334444555554 36889999999 99999999998766 2234778899999986   54


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                      .. +..++  ..|.+|.|+.+|.+.   .-+.-|...|+.++.+++.|..+.- ..+|+.|.+.+-.+.+.++-.+-...
T Consensus       377 gl-r~KMv--~~GllP~l~~ll~~d---~~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~  449 (791)
T KOG1222|consen  377 GL-RPKMV--NGGLLPHLASLLDSD---TKHGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIAL  449 (791)
T ss_pred             cc-cHHHh--hccchHHHHHHhCCc---ccchhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHH
Confidence            43 55555  899999999999865   2334588999999999999999987 68999999988766455554444444


Q ss_pred             HHHhccCcchHHHHHhcCcHHHHHH------------HhccCCCCCCCCCCCC------CCCCCCCCCCCcchHHHHHHH
Q 036338          258 LITISSSKRAKTKLINHKLITELGK------------LITDGHNGNGSGNGNG------NGNGNGSGNGTVLITEKALRL  319 (408)
Q Consensus       258 L~~Ls~~~~n~~~~~~~G~i~~Lv~------------lL~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~a~~~  319 (408)
                      -.|||.+..|.+.+.+..++..|.+            +++.- -++++..++-      ...+....+.+....-.++++
T Consensus       450 ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRni-SqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGt  528 (791)
T KOG1222|consen  450 CINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNI-SQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGT  528 (791)
T ss_pred             HHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHh-hhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHH
Confidence            4689988888777776555554443            33221 1112212211      111112224456788899999


Q ss_pred             HHHHhCCHHHHHHHHhhcCchHHHHHHHHH----------------------HHHHHHHhcCcHHHHHHHHhhcC
Q 036338          320 VEILSTTKQGRMEICQDAALLNGVVQKMLK----------------------TAQEAVSSSNVLTKILLLMQSNC  372 (408)
Q Consensus       320 L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~----------------------~~~~~~~~~g~~~~Ll~ll~~~~  372 (408)
                      |.||...+-.+.++..+...||.+-..|.-                      .+......+|.++.|+++|++..
T Consensus       529 lanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~Q  603 (791)
T KOG1222|consen  529 LANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQ  603 (791)
T ss_pred             HhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhc
Confidence            999999888899999887888876654433                      34444567899999999998643

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.79  E-value=1.6e-07  Score=90.81  Aligned_cols=203  Identities=15%  Similarity=0.159  Sum_probs=144.7

Q ss_pred             HHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcC-----ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338          104 DIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFD-----GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus       104 ~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~-----G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      .+++.+ +++.+ ....+..+..+..+++.....+.+..     ....+++.++.+++ ..+...|+.+|..|..  ...
T Consensus        62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~--~~~  137 (312)
T PF03224_consen   62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLS--QGP  137 (312)
T ss_dssp             HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHT--STT
T ss_pred             HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHH--cCC
Confidence            344444 34455 77788888888888776666665521     25778888887775 4455889999998875  333


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCC---ChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhc------ccCCCH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQE---SVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSL------SLDSDR  248 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~---~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL------~~~~~~  248 (408)
                      .. ....   ..+.++.++..|++..   +.+.+.-++.+|.+|...++.|..+.. .|+++.|+.+|      .+..+.
T Consensus       138 ~~-~~~~---~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~  212 (312)
T PF03224_consen  138 KR-SEKL---VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGI  212 (312)
T ss_dssp             T---HHH---HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HH
T ss_pred             cc-ccch---HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCch
Confidence            31 1111   2367888888887521   345568899999999999999999998 89999999999      444467


Q ss_pred             HHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHH
Q 036338          249 RLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQ  328 (408)
Q Consensus       249 ~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~  328 (408)
                      +.+=.++-++|-|+.+++....+.+.+.|+.|+++++.                    .....+..-++++|.||...+.
T Consensus       213 Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~--------------------~~KEKvvRv~la~l~Nl~~~~~  272 (312)
T PF03224_consen  213 QLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKD--------------------SIKEKVVRVSLAILRNLLSKAP  272 (312)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----------------------SHHHHHHHHHHHHHTTSSSS
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHh--------------------cccchHHHHHHHHHHHHHhccH
Confidence            89999999999999999999999999999999999987                    3478999999999999997544


Q ss_pred             --HHHHHHh
Q 036338          329 --GRMEICQ  335 (408)
Q Consensus       329 --~~~~~~~  335 (408)
                        ....++.
T Consensus       273 ~~~~~~mv~  281 (312)
T PF03224_consen  273 KSNIELMVL  281 (312)
T ss_dssp             TTHHHHHHH
T ss_pred             HHHHHHHHH
Confidence              5555555

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>smart00184 RING Ring finger

Probab=98.75  E-value=7.7e-09  Score=66.94  Aligned_cols=39  Identities=54%  Similarity=1.054  Sum_probs=35.9

Q ss_pred             ccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCc
Q 036338           16 CPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPAT   54 (408)
Q Consensus        16 Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~   54 (408)
                      ||||.+..++|++++|||.||..|+.+|+..+...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            899999999999999999999999999998666779986

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=6.9e-09  Score=95.02  Aligned_cols=52  Identities=17%  Similarity=0.409  Sum_probs=45.7

Q ss_pred             CCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCC
Q 036338           11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF   63 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l   63 (408)
                      +..+.|.||++-++||--++|||.||=+||.+|..+ ...||.||+.+++.++
T Consensus       237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV  288 (293)
T ss_pred             CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence            455899999999999999999999999999999986 4459999998877654

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.68  E-value=2.3e-08  Score=93.91  Aligned_cols=96  Identities=16%  Similarity=0.225  Sum_probs=59.7

Q ss_pred             CcccccCcccc-CCCce----ecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCC----CcccHHH------HHHHHHH
Q 036338           12 SFFRCPISLDV-MKSPV----SLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE----FVPNRTL------QRLIQIW   76 (408)
Q Consensus        12 ~~~~Cpi~~~~-~~dPv----~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~----l~~n~~l------~~~I~~~   76 (408)
                      ++..||+|+.- +.+|-    +.+|||+||++||..+|..+...||.|+.++....    +.++..+      |+.|...
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~iRkrv~~i   81 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDIRKRVLKI   81 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHHHHHHHHH
Confidence            45689999983 34553    33699999999999998877788999999887755    4445443      4444444


Q ss_pred             HHhcCCCCCCCCCCCCCCCccCHHHHHHHHHHHhcC
Q 036338           77 SDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISK  112 (408)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~  112 (408)
                      +.+....+++..   .+..  .-+.++.+|-.|-.+
T Consensus        82 ~Nk~e~dF~~l~---~yNd--YLE~vEdii~nL~~~  112 (309)
T TIGR00570        82 YNKREEDFPSLR---EYND--YLEEVEDIVYNLTNN  112 (309)
T ss_pred             HccchhccCCHH---HHHH--HHHHHHHHHHHhhcC
Confidence            443332232211   1000  135566666666554

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.68  E-value=1.4e-06  Score=84.35  Aligned_cols=176  Identities=11%  Similarity=0.134  Sum_probs=131.1

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc---chhhHHHHHHHHHHhcccccc
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN---DVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~---~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      .+..+++.+.+++.. +..|+..|..+....+....... . +.++.++..|++..   +.+.+..++.+|.+|..  .+
T Consensus       106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~-~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~--~~  181 (312)
T PF03224_consen  106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-K-EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR--SK  181 (312)
T ss_dssp             -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-H-HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT--SH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-H-HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC--cc
Confidence            467788888877766 88899999999776554444333 3 67888999988743   23445888999999986  34


Q ss_pred             hHHHHHHHhccCcccHHHHHHHH------hcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVL------KQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRL  250 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL------~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  250 (408)
                      ..  |..+.  +.|+++.|+.+|      .++.+...+-+++.+++.|+.+++....+.. .+.|+.|+++++......+
T Consensus       182 ~~--R~~f~--~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKv  256 (312)
T PF03224_consen  182 EY--RQVFW--KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKV  256 (312)
T ss_dssp             HH--HHHHH--THHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHH
T ss_pred             hh--HHHHH--hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchH
Confidence            33  78887  899999999999      3332567778999999999999999999987 6799999999997667789


Q ss_pred             HHHHHHHHHHhccCcc--hHHHHHhcCcHHHHHHHhc
Q 036338          251 IEASLSCLITISSSKR--AKTKLINHKLITELGKLIT  285 (408)
Q Consensus       251 ~~~A~~aL~~Ls~~~~--n~~~~~~~G~i~~Lv~lL~  285 (408)
                      .+-++.+|+||.....  +...|+..|+++.|-.|..
T Consensus       257 vRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  257 VRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            9999999999998776  8899998877666655554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.60  E-value=3.3e-08  Score=66.34  Aligned_cols=41  Identities=15%  Similarity=0.394  Sum_probs=34.9

Q ss_pred             cccCccccC---CCceecCCCCcccHhhHHHHHhcCCCCCCCccc
Q 036338           15 RCPISLDVM---KSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQ   56 (408)
Q Consensus        15 ~Cpi~~~~~---~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~   56 (408)
                      .|++|.+.+   +.|++++|||+||.+||.++. .....||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            399999999   348888999999999999998 34567999974

>PRK09687 putative lyase; Provisional

Probab=98.59  E-value=3.8e-06  Score=79.82  Aligned_cols=213  Identities=11%  Similarity=0.040  Sum_probs=145.1

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH  179 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~  179 (408)
                      .+..|+..|...+.. +..|++.|..+-.           . .+++.+..++.+.+ ..+...|+.+|+.|-.  .+.. 
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~-~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~--~~~~-   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------Q-DVFRLAIELCSSKN-PIERDIGADILSQLGM--AKRC-   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------c-hHHHHHHHHHhCCC-HHHHHHHHHHHHhcCC--Cccc-
Confidence            355678888888777 8889999886642           2 67788888887776 3344999999998753  1110 


Q ss_pred             HHHHHhccCcccHHHHHHH-HhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHH
Q 036338          180 LMNLILKRDQDCLNSLLLV-LKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCL  258 (408)
Q Consensus       180 ~~~~i~~~~~g~i~~Lv~l-L~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL  258 (408)
                              ..-+++.|..+ ++.. +..+|..|+.+|+++.......    . ..+++.|...+.++ +..++..|+.+|
T Consensus        88 --------~~~a~~~L~~l~~~D~-d~~VR~~A~~aLG~~~~~~~~~----~-~~a~~~l~~~~~D~-~~~VR~~a~~aL  152 (280)
T PRK09687         88 --------QDNVFNILNNLALEDK-SACVRASAINATGHRCKKNPLY----S-PKIVEQSQITAFDK-STNVRFAVAFAL  152 (280)
T ss_pred             --------hHHHHHHHHHHHhcCC-CHHHHHHHHHHHhccccccccc----c-hHHHHHHHHHhhCC-CHHHHHHHHHHH
Confidence                    12346777777 4556 8999999999999986433211    1 23567788888887 889999999999


Q ss_pred             HHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcC
Q 036338          259 ITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAA  338 (408)
Q Consensus       259 ~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g  338 (408)
                      ..+..          ..+|+.|+.+|.++                     +..+...|+.+|..+....         ..
T Consensus       153 g~~~~----------~~ai~~L~~~L~d~---------------------~~~VR~~A~~aLg~~~~~~---------~~  192 (280)
T PRK09687        153 SVIND----------EAAIPLLINLLKDP---------------------NGDVRNWAAFALNSNKYDN---------PD  192 (280)
T ss_pred             hccCC----------HHHHHHHHHHhcCC---------------------CHHHHHHHHHHHhcCCCCC---------HH
Confidence            76532          23889999999864                     7789999999999984311         13


Q ss_pred             chHHHHHHHHH---HHHHHHH-------hcCcHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 036338          339 LLNGVVQKMLK---TAQEAVS-------SSNVLTKILLLMQSNCTPAVRQMSADLLKIF  387 (408)
Q Consensus       339 ~i~~lv~~l~~---~~~~~~~-------~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l  387 (408)
                      .++.|+..|..   +++..++       ..-+++.|+..|+.+.   .+..|..+|..+
T Consensus       193 ~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~---~~~~a~~ALg~i  248 (280)
T PRK09687        193 IREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT---VGDLIIEAAGEL  248 (280)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc---hHHHHHHHHHhc
Confidence            45556664433   3333332       3567888888887643   344554444443

>PHA02926 zinc finger-like protein; Provisional

Probab=98.57  E-value=3.4e-08  Score=87.22  Aligned_cols=51  Identities=18%  Similarity=0.305  Sum_probs=40.6

Q ss_pred             CCCCcccccCccccCCC---------ceecCCCCcccHhhHHHHHhcC-----CCCCCCcccccC
Q 036338            9 TVPSFFRCPISLDVMKS---------PVSLCTGVTYDRASIQRWLDSG-----NNTCPATMQVLQ   59 (408)
Q Consensus         9 ~~~~~~~Cpi~~~~~~d---------Pv~~~cgh~f~r~cI~~~~~~~-----~~~CP~~~~~l~   59 (408)
                      ...++..|+||.+...+         ++..+|+|+||..||.+|.+..     ...||.||+.+.
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            34667899999998644         4666899999999999998742     246999998764

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.54  E-value=4.9e-05  Score=75.73  Aligned_cols=222  Identities=14%  Similarity=0.129  Sum_probs=156.6

Q ss_pred             HHHHHHHHHHHhcCCh-h-HHHHHHHHHHHhhhChhhhhhhhhc----CChHHHHHHHhhcCcchhhHHHHHHHHHHhcc
Q 036338           99 QDEVKDIIRVAISKNE-D-FSENLTKIVAFAKESDENKTFLAKF----DGLVVMLVEILSNVNDVNMLKQVIRVLDLILN  172 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~-~-~~~Al~~L~~la~~~~~~r~~i~~~----~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~  172 (408)
                      +..+..++..++..+. + ....+.-+..+..+++.....+.+.    +....+++.+|...+ .-+...|..+|..+..
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~  130 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLAC  130 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHh
Confidence            4567778888876654 4 6667777888877776666666654    356778888887655 2234778888877764


Q ss_pred             cccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCC-CHHHH
Q 036338          173 KIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDS-DRRLI  251 (408)
Q Consensus       173 ~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~  251 (408)
                        ..........   ..-.+..|...|+++.+...+.-++..|..|...++.|..+.. .+++++|+.+|+... +.+.+
T Consensus       131 --~~~~~~~~~~---l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~-~~~v~~L~~~L~~~~~~~Ql~  204 (429)
T cd00256         131 --FGLAKMEGSD---LDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL-ADGVPTLVKLLSNATLGFQLQ  204 (429)
T ss_pred             --cCccccchhH---HHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH-ccCHHHHHHHHhhccccHHHH
Confidence              1111000000   0113345566666542567788888999999999999998887 668999999998643 56888


Q ss_pred             HHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCH----
Q 036338          252 EASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTK----  327 (408)
Q Consensus       252 ~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~----  327 (408)
                      =.++-++|-|+..++....+.+.+.|+.|+++++.                    .....+...++++|.||...+    
T Consensus       205 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~--------------------s~KEKvvRv~l~~l~Nll~~~~~~~  264 (429)
T cd00256         205 YQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKE--------------------STKEKVIRIVLAIFRNLISKRVDRE  264 (429)
T ss_pred             HHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHh--------------------hhhHHHHHHHHHHHHHHhhcccccc
Confidence            89999999999998877777789999999999986                    347899999999999998743    


Q ss_pred             ---HHHHHHHhhcCchHHHHHHHHH
Q 036338          328 ---QGRMEICQDAALLNGVVQKMLK  349 (408)
Q Consensus       328 ---~~~~~~~~~~g~i~~lv~~l~~  349 (408)
                         .....++.  .+++.+++.|..
T Consensus       265 ~~~~~~~~mv~--~~l~~~l~~L~~  287 (429)
T cd00256         265 VKKTAALQMVQ--CKVLKTLQSLEQ  287 (429)
T ss_pred             hhhhHHHHHHH--cChHHHHHHHhc
Confidence               12234443  245556665544

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=1.4e-08  Score=95.21  Aligned_cols=69  Identities=25%  Similarity=0.327  Sum_probs=58.8

Q ss_pred             CCCCcccccCccccCCCceecC-CCCcccHhhHHHHHhcCCCCCCCcccccCC-CCCcccHHHHHHHHHHH
Q 036338            9 TVPSFFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSGNNTCPATMQVLQS-KEFVPNRTLQRLIQIWS   77 (408)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~-~~l~~n~~l~~~I~~~~   77 (408)
                      .+-.+|.||||+.+++..++++ |+|.||+.||-.-+..++..||.|++.+.. ..|.++.....+|.+..
T Consensus        39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~  109 (381)
T KOG0311|consen   39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY  109 (381)
T ss_pred             HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence            4566799999999999999985 999999999999999888899999998755 67888877777776554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=6.6e-08  Score=86.78  Aligned_cols=76  Identities=29%  Similarity=0.461  Sum_probs=70.0

Q ss_pred             cCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338            6 LYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      ...++|+.++|.|+.++|++||+.+.|-||+|.-|++.+..-....|+|+.+++...++||..|+..|..|...+.
T Consensus       204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~  279 (284)
T KOG4642|consen  204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENE  279 (284)
T ss_pred             ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcc
Confidence            3467899999999999999999999999999999999998866679999999999999999999999999998765

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=1e-05  Score=84.07  Aligned_cols=234  Identities=17%  Similarity=0.215  Sum_probs=168.8

Q ss_pred             HHHHHHHHHHHhcC-Chh-HHHHHHHHHHHh-hhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhccccc
Q 036338           99 QDEVKDIIRVAISK-NED-FSENLTKIVAFA-KESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIE  175 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la-~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~  175 (408)
                      ...+..|++-|+.. ++. |.+|+..|..+. ..+++.-.-+--- -.||.|+.+|+......++-.|+.+|.+|+.  -
T Consensus       166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~-slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e--v  242 (1051)
T KOG0168|consen  166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVK-SLVPVLVALLSHEHNFDIMLLACRALTYLCE--V  242 (1051)
T ss_pred             hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHh--h
Confidence            45677888888876 444 899999988764 4455444333222 6899999999887744455899999999974  1


Q ss_pred             chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHH
Q 036338          176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASL  255 (408)
Q Consensus       176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~  255 (408)
                      =+.. -.+++  +.++||.|+.-|..=.-.++-+.+..+|..++..+. + .|.. .|++-..+.+|.-- +..+++.|+
T Consensus       243 lP~S-~a~vV--~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~-~-AiL~-AG~l~a~LsylDFF-Si~aQR~Al  315 (1051)
T KOG0168|consen  243 LPRS-SAIVV--DEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP-K-AILQ-AGALSAVLSYLDFF-SIHAQRVAL  315 (1051)
T ss_pred             ccch-hheee--cccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc-H-HHHh-cccHHHHHHHHHHH-HHHHHHHHH
Confidence            1222 35566  899999999888754367888999999999997653 3 4445 78899999998865 778999999


Q ss_pred             HHHHHhccC--cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC----CHHH
Q 036338          256 SCLITISSS--KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST----TKQG  329 (408)
Q Consensus       256 ~aL~~Ls~~--~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~----~~~~  329 (408)
                      ....|.|..  ++.-..+++  ++|.|-.+|+..                     +....|.++-.+..++.    .++-
T Consensus       316 aiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~---------------------D~k~ies~~ic~~ri~d~f~h~~~k  372 (1051)
T KOG0168|consen  316 AIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQ---------------------DKKPIESVCICLTRIADGFQHGPDK  372 (1051)
T ss_pred             HHHHHHHhcCCCccchHHHH--HHHHHHHHHhhc---------------------cchhHHHHHHHHHHHHHhcccChHH
Confidence            999999984  333333333  689999999864                     88888988888888875    4677


Q ss_pred             HHHHHhhcCchHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 036338          330 RMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLM  368 (408)
Q Consensus       330 ~~~~~~~~g~i~~lv~~l~~~~~~~~~~~g~~~~Ll~ll  368 (408)
                      -.+++.+ +.|.-.+++|.  +...+++.|....++.+|
T Consensus       373 Ldql~s~-dLi~~~~qLls--vt~t~Ls~~~~~~vIrml  408 (1051)
T KOG0168|consen  373 LDQLCSH-DLITNIQQLLS--VTPTILSNGTYTGVIRML  408 (1051)
T ss_pred             HHHHhch-hHHHHHHHHHh--cCcccccccchhHHHHHH
Confidence            7788876 77777777433  335566665555554444

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.50  E-value=1.2e-07  Score=86.69  Aligned_cols=70  Identities=16%  Similarity=0.364  Sum_probs=58.5

Q ss_pred             ccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccc-cCCCCCcccHHHHHHHHHHHHhcCCC
Q 036338           14 FRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQV-LQSKEFVPNRTLQRLIQIWSDSVQHR   83 (408)
Q Consensus        14 ~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~-l~~~~l~~n~~l~~~I~~~~~~~~~~   83 (408)
                      +.||+|+.++++|+-+ +|||+||.+||+..+-...+.||.|... +-.+.|.|+...+..|+.+...+.+.
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq~~~  346 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQRKK  346 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHHHHh
Confidence            8999999999999988 6999999999999877678899999642 33466889998888888887755533

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=3.7e-05  Score=73.43  Aligned_cols=166  Identities=18%  Similarity=0.265  Sum_probs=126.8

Q ss_pred             chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcCh
Q 036338          156 DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGL  234 (408)
Q Consensus       156 ~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~  234 (408)
                      +.+-.+.|+.-|..++.   +-.....++   +.|++.+++..|.++ +.+.|+.|+++|...+.+. .....+.+ .|+
T Consensus        96 ~le~ke~ald~Le~lve---~iDnAndl~---~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~  167 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVE---DIDNANDLI---SLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIE-LGA  167 (342)
T ss_pred             CHHHHHHHHHHHHHHHH---hhhhHHhHh---hccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHH-ccc
Confidence            44555888888877774   333223444   789999999999999 9999999999999998764 57777777 789


Q ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchH
Q 036338          235 LAETVKSLSLDSDRRLIEASLSCLITISSSKR-AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLIT  313 (408)
Q Consensus       235 i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
                      ++.|+.+|....+..++..|+.|+++|-.+.. ....+...++...|...|.+.                   +.+...+
T Consensus       168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-------------------~~~~~lk  228 (342)
T KOG2160|consen  168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-------------------NTSVKLK  228 (342)
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-------------------CcchHHH
Confidence            99999999976567888999999999998755 566667888999999999974                   4588999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH
Q 036338          314 EKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK  349 (408)
Q Consensus       314 ~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~  349 (408)
                      .+++..+..|......-..++.. -+.+.++..+..
T Consensus       229 rK~~~Ll~~Ll~~~~s~~d~~~~-~~f~~~~~~l~~  263 (342)
T KOG2160|consen  229 RKALFLLSLLLQEDKSDEDIASS-LGFQRVLENLIS  263 (342)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHH-hhhhHHHHHHhh
Confidence            99999999998643333335543 334444443333

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=3.4e-05  Score=73.69  Aligned_cols=183  Identities=15%  Similarity=0.197  Sum_probs=139.5

Q ss_pred             CChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCc
Q 036338          112 KNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQ  189 (408)
Q Consensus       112 ~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~  189 (408)
                      .+.+ +..|+..|..++.. =.|-..+... |+..+++..|.+.+ ..+  +.|+++|+..+.  +... .++.+.  +.
T Consensus        95 ~~le~ke~ald~Le~lve~-iDnAndl~~~-ggl~~ll~~l~~~~~~lR--~~Aa~Vigt~~q--NNP~-~Qe~v~--E~  165 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVED-IDNANDLISL-GGLVPLLGYLENSDAELR--ELAARVIGTAVQ--NNPK-SQEQVI--EL  165 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHh-hhhHHhHhhc-cCHHHHHHHhcCCcHHHH--HHHHHHHHHHHh--cCHH-HHHHHH--Hc
Confidence            3455 88999999999875 5677889999 99999999998877 555  999999999886  3333 366665  88


Q ss_pred             ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc-hhhHHhhhcChHHHHHHhcccC-CCHHHHHHHHHHHHHhccCcch
Q 036338          190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD-SKVKIAERDGLLAETVKSLSLD-SDRRLIEASLSCLITISSSKRA  267 (408)
Q Consensus       190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~A~~aL~~Ls~~~~n  267 (408)
                      |+++.|+..|.+..+..+|..|..++..|-.+.. ....+.. .++...|.++|+++ .+...++.++..+..|......
T Consensus       166 ~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s  244 (342)
T KOG2160|consen  166 GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS  244 (342)
T ss_pred             ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence            9999999999876477888999999999988754 4555555 55689999999974 4788999999999998876554


Q ss_pred             HHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          268 KTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       268 ~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      ...++. .|....++.+..+                     .+..+.+.++.++-.+..
T Consensus       245 ~~d~~~~~~f~~~~~~l~~~---------------------l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  245 DEDIASSLGFQRVLENLISS---------------------LDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hhhHHHHhhhhHHHHHHhhc---------------------cchhhhHHHHHHHHHHHH
Confidence            444554 5554555555543                     367788888877777654

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=98.39  E-value=1.2e-07  Score=88.60  Aligned_cols=67  Identities=16%  Similarity=0.349  Sum_probs=54.6

Q ss_pred             CCCCcccccCccccCCCceecC-CCCcccHhhHHHHHhcCCCCCCCcccccCC----CCCcccHHHHHHHHHH
Q 036338            9 TVPSFFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSGNNTCPATMQVLQS----KEFVPNRTLQRLIQIW   76 (408)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~----~~l~~n~~l~~~I~~~   76 (408)
                      ++-...+|++|..+|.|+-|+. |=|||||+||-+++.. ..+||.|...+..    ..+..+..|+.++.+.
T Consensus        11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL   82 (331)
T KOG2660|consen   11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL   82 (331)
T ss_pred             hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence            4567789999999999999885 9999999999999987 6689999876543    3466777777776543

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=1.8e-07  Score=92.18  Aligned_cols=69  Identities=19%  Similarity=0.373  Sum_probs=54.7

Q ss_pred             cccccCccccCCCceecCCCCcccHhhHHHHHhcC----CCCCCCcccccCCCCCcccH----HHHHHHHHHHHhcC
Q 036338           13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSG----NNTCPATMQVLQSKEFVPNR----TLQRLIQIWSDSVQ   81 (408)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~----~~~CP~~~~~l~~~~l~~n~----~l~~~I~~~~~~~~   81 (408)
                      +..||||++...-|+.+.|||.||-.||.+||..+    ...||.|+..+..+++.|-+    .-++.++.....++
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng  262 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG  262 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence            78899999999999999999999999999998764    35799999998887776643    22333555555555

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.37  E-value=3.2e-06  Score=69.56  Aligned_cols=132  Identities=14%  Similarity=0.146  Sum_probs=109.4

Q ss_pred             ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHH
Q 036338          190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKT  269 (408)
Q Consensus       190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~  269 (408)
                      +.+..||.-.....+.+.|+....-|.|++-++-|-..+.+ ..+++.+|+.|..+ +...++-+.+.|.|||..+.|.+
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq-l~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ-LDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH-hhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHHH
Confidence            45667777666544899999999999999999988888877 88999999999987 88999999999999999999999


Q ss_pred             HHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHH
Q 036338          270 KLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQGRMEICQDAALLNGVVQKML  348 (408)
Q Consensus       270 ~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~  348 (408)
                      .|++++++|.++..++|+                     ....+..|+..|..|+.. ...|..+.     -|.+|+.+.
T Consensus        94 ~I~ea~g~plii~~lssp---------------------~e~tv~sa~~~l~~l~~~~Rt~r~ell-----~p~Vv~~v~  147 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSP---------------------PEITVHSAALFLQLLEFGERTERDELL-----SPAVVRTVQ  147 (173)
T ss_pred             HHHHhcCCceEEeecCCC---------------------hHHHHHHHHHHHHHhcCcccchhHHhc-----cHHHHHHHH
Confidence            999999999999999876                     678889999999999863 33344333     345666544


Q ss_pred             H
Q 036338          349 K  349 (408)
Q Consensus       349 ~  349 (408)
                      |
T Consensus       148 r  148 (173)
T KOG4646|consen  148 R  148 (173)
T ss_pred             H
Confidence            4

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=1.5e-07  Score=96.99  Aligned_cols=56  Identities=13%  Similarity=0.295  Sum_probs=50.2

Q ss_pred             CCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc
Q 036338           10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP   65 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~   65 (408)
                      +..-++||.|..-.+|-|++.|||-||..||+..+..-...||.|+..|...|+.+
T Consensus       640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~  695 (698)
T KOG0978|consen  640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR  695 (698)
T ss_pred             HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence            34558999999999999999999999999999999877788999999998887755

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=2.5e-07  Score=83.84  Aligned_cols=52  Identities=15%  Similarity=0.312  Sum_probs=45.2

Q ss_pred             CCcccccCccccCCCceecCCCCcccHhhHHH-HHhcCCCCCCCcccccCCCC
Q 036338           11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQR-WLDSGNNTCPATMQVLQSKE   62 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~-~~~~~~~~CP~~~~~l~~~~   62 (408)
                      ..++.|+||.+.+.+|+-++|||.||-.||.. |-......||.||+...+.+
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            36799999999999999999999999999999 87766667999998765543

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=0.00019  Score=74.87  Aligned_cols=215  Identities=16%  Similarity=0.189  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIRVAISK-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      ..-++.|+.+|+.. +.+ ...|.++|..++.--|+....+++. |+||.|+.-|..-.-..+.|.++.+|-.|+.   +
T Consensus       210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~-~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR---~  285 (1051)
T KOG0168|consen  210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDE-HAIPVLLEKLLTIEYIDVAEQSLQALEKISR---R  285 (1051)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecc-cchHHHHHhhhhhhhhHHHHHHHHHHHHHHh---h
Confidence            45688999999865 456 8999999999999999999999999 9999999988765422344999999999986   4


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC--cchhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD--ADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS  254 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A  254 (408)
                      .+  +. |.  ++|++...+..|..- +..+|..|..+..|+|..  .|.-..+.+   ++|.|..+|... +.+..+.+
T Consensus       286 H~--~A-iL--~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~e---alPlL~~lLs~~-D~k~ies~  355 (1051)
T KOG0168|consen  286 HP--KA-IL--QAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVME---ALPLLTPLLSYQ-DKKPIESV  355 (1051)
T ss_pred             cc--HH-HH--hcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHHH---HHHHHHHHHhhc-cchhHHHH
Confidence            44  44 44  899999999999988 899999999999999975  344444444   599999999987 77888988


Q ss_pred             HHHHHHhccC----cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHH
Q 036338          255 LSCLITISSS----KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQG  329 (408)
Q Consensus       255 ~~aL~~Ls~~----~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~  329 (408)
                      +-++..++..    ++--.++...|.|....+||.-.+                 ..-+..+.......|..++. ++-.
T Consensus       356 ~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~-----------------t~Ls~~~~~~vIrmls~msS~~pl~  418 (1051)
T KOG0168|consen  356 CICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTP-----------------TILSNGTYTGVIRMLSLMSSGSPLL  418 (1051)
T ss_pred             HHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCc-----------------ccccccchhHHHHHHHHHccCChHH
Confidence            8888887643    234466668999999999986410                 01123444555666777765 4888


Q ss_pred             HHHHHhhcCchHHHHH
Q 036338          330 RMEICQDAALLNGVVQ  345 (408)
Q Consensus       330 ~~~~~~~~g~i~~lv~  345 (408)
                      ++.+... +....|-.
T Consensus       419 ~~tl~k~-~I~~~L~~  433 (1051)
T KOG0168|consen  419 FRTLLKL-DIADTLKR  433 (1051)
T ss_pred             HHHHHHh-hHHHHHHH
Confidence            8877764 44443444

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.26  E-value=0.00023  Score=71.02  Aligned_cols=224  Identities=13%  Similarity=0.157  Sum_probs=153.1

Q ss_pred             ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhc---cCcccHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 036338          142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILK---RDQDCLNSLLLVLKQQESVDSRIESLRLLEFI  218 (408)
Q Consensus       142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~---~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~L  218 (408)
                      ..+..++.+|............+..+..|..  .++.. -..+..   .+.....+++.+|..+ +.-+...|+.+|..+
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~--~~~~~-~~~f~~~~~~~~~~~~~fl~lL~~~-d~~i~~~a~~iLt~l  128 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQ--EDDTR-VKLFHDDALLKKKTWEPFFNLLNRQ-DQFIVHMSFSILAKL  128 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHH--hchHH-HHHHHHHhhccccchHHHHHHHcCC-chhHHHHHHHHHHHH
Confidence            5678889988776544455777777777765  33332 233320   1246788889999888 888999999999988


Q ss_pred             hcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCC
Q 036338          219 AGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNG  298 (408)
Q Consensus       219 a~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~  298 (408)
                      ......+..-....-.+.-|...|+++.+...+..++.+|.+|...++.|..+.+.+++++|+.+|+..           
T Consensus       129 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~-----------  197 (429)
T cd00256         129 ACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNA-----------  197 (429)
T ss_pred             HhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhc-----------
Confidence            754321111001011344566666654456788889999999999999999999999999999999852           


Q ss_pred             CCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHHH----------------------------
Q 036338          299 NGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKT----------------------------  350 (408)
Q Consensus       299 ~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~~----------------------------  350 (408)
                              .....++-.++-++..|+-+++....+.. .+.|+.+++.+-..                            
T Consensus       198 --------~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~  268 (429)
T cd00256         198 --------TLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKT  268 (429)
T ss_pred             --------cccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhh
Confidence                    12567889999999999998886666655 48899988854331                            


Q ss_pred             HHHHHHhcCcHHHHHHHHhhc--CCHHHHHHHHHHHHHHhhc
Q 036338          351 AQEAVSSSNVLTKILLLMQSN--CTPAVRQMSADLLKIFRVN  390 (408)
Q Consensus       351 ~~~~~~~~g~~~~Ll~ll~~~--~~~~~k~~A~~lL~~l~~~  390 (408)
                      ....|+..| +++++..|+..  ..+...+.-..+-..|.++
T Consensus       269 ~~~~mv~~~-l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~  309 (429)
T cd00256         269 AALQMVQCK-VLKTLQSLEQRKYDDEDLTDDLKFLTEELKNS  309 (429)
T ss_pred             HHHHHHHcC-hHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence            223344445 45666777543  4666777666666666663

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.23  E-value=0.00046  Score=76.18  Aligned_cols=133  Identities=14%  Similarity=0.108  Sum_probs=66.4

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccc----
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKI----  174 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~----  174 (408)
                      .++.|++.|.+.++. |..|+..|..+..           . ++++.|+.+|++++ +++  ..|+.+|..+....    
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~-~~~~~L~~aL~D~d~~VR--~~Aa~aL~~l~~~~~~~~  687 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------P-GFGPALVAALGDGAAAVR--RAAAEGLRELVEVLPPAP  687 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------h-hHHHHHHHHHcCCCHHHH--HHHHHHHHHHHhccCchH
Confidence            345666667666666 6666666665431           1 55666666665444 233  45555554432100    


Q ss_pred             -------cchHHHHHHHh----ccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc
Q 036338          175 -------EDQQHLMNLIL----KRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS  243 (408)
Q Consensus       175 -------~~~~~~~~~i~----~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~  243 (408)
                             +++..+|....    ....+-...|+..|.+. +..+|..|+.+|..+.              ..+.|..++.
T Consensus       688 ~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~-d~~VR~~Av~aL~~~~--------------~~~~l~~~l~  752 (897)
T PRK13800        688 ALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDP-DHRVRIEAVRALVSVD--------------DVESVAGAAT  752 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCC-CHHHHHHHHHHHhccc--------------CcHHHHHHhc
Confidence                   11111111111    00123345566677776 7777777777776541              0123444555


Q ss_pred             cCCCHHHHHHHHHHHHHhcc
Q 036338          244 LDSDRRLIEASLSCLITISS  263 (408)
Q Consensus       244 ~~~~~~~~~~A~~aL~~Ls~  263 (408)
                      ++ ++.++..++.+|..+..
T Consensus       753 D~-~~~VR~~aa~aL~~~~~  771 (897)
T PRK13800        753 DE-NREVRIAVAKGLATLGA  771 (897)
T ss_pred             CC-CHHHHHHHHHHHHHhcc
Confidence            54 55555555555555543

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.22  E-value=1.1e-06  Score=65.84  Aligned_cols=40  Identities=28%  Similarity=0.615  Sum_probs=31.8

Q ss_pred             cccCccccCCC------------cee-cCCCCcccHhhHHHHHhcCCCCCCCcc
Q 036338           15 RCPISLDVMKS------------PVS-LCTGVTYDRASIQRWLDSGNNTCPATM   55 (408)
Q Consensus        15 ~Cpi~~~~~~d------------Pv~-~~cgh~f~r~cI~~~~~~~~~~CP~~~   55 (408)
                      .|+||++.|.+            |+. .+|||.|-..||++|++.+. +||.||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence            39999999944            333 47999999999999998644 899996

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.19  E-value=0.00017  Score=79.67  Aligned_cols=199  Identities=14%  Similarity=0.128  Sum_probs=106.6

Q ss_pred             ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338          142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD  221 (408)
Q Consensus       142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~  221 (408)
                      +.++.|+..|.+++ ..+...|+.+|..+.                ..++++.|+..|.+. +..+|..|+.+|..+...
T Consensus       621 ~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~----------------~~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~  682 (897)
T PRK13800        621 PSVAELAPYLADPD-PGVRRTAVAVLTETT----------------PPGFGPALVAALGDG-AAAVRRAAAEGLRELVEV  682 (897)
T ss_pred             hhHHHHHHHhcCCC-HHHHHHHHHHHhhhc----------------chhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhc
Confidence            56777888887666 333377777775532                122345555566555 666666666666554211


Q ss_pred             ---------------cchhhHHhh-----hcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc---------C--cchHHH
Q 036338          222 ---------------ADSKVKIAE-----RDGLLAETVKSLSLDSDRRLIEASLSCLITISS---------S--KRAKTK  270 (408)
Q Consensus       222 ---------------~~~~~~i~~-----~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~---------~--~~n~~~  270 (408)
                                     +..|.....     ..+-...|++.|++. ++.++..|+.+|..+-.         +  ...|..
T Consensus       683 ~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~-d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~  761 (897)
T PRK13800        683 LPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDP-DHRVRIEAVRALVSVDDVESVAGAATDENREVRIA  761 (897)
T ss_pred             cCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCC-CHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHH
Confidence                           001111110     012345677888886 88899999888886521         1  112322


Q ss_pred             HHh---------cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHH---HHHHHhhcC
Q 036338          271 LIN---------HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQG---RMEICQDAA  338 (408)
Q Consensus       271 ~~~---------~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~~g  338 (408)
                      .++         .+.++.|+.++.++                     ++.++..|+.+|..+-..+..   ......+. 
T Consensus       762 aa~aL~~~~~~~~~~~~~L~~ll~D~---------------------d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~-  819 (897)
T PRK13800        762 VAKGLATLGAGGAPAGDAVRALTGDP---------------------DPLVRAAALAALAELGCPPDDVAAATAALRAS-  819 (897)
T ss_pred             HHHHHHHhccccchhHHHHHHHhcCC---------------------CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCC-
Confidence            221         11356777777653                     678888888888777543211   11111110 


Q ss_pred             chHHHHHHHHHHHHHHHH---hcCcHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 036338          339 LLNGVVQKMLKTAQEAVS---SSNVLTKILLLMQSNCTPAVRQMSADLLKIF  387 (408)
Q Consensus       339 ~i~~lv~~l~~~~~~~~~---~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l  387 (408)
                        ...|+.   .+.+.+.   ....++.|+.+|. +.+..+|..|...|..+
T Consensus       820 --d~~VR~---~Aa~aL~~l~~~~a~~~L~~~L~-D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        820 --AWQVRQ---GAARALAGAAADVAVPALVEALT-DPHLDVRKAAVLALTRW  865 (897)
T ss_pred             --ChHHHH---HHHHHHHhccccchHHHHHHHhc-CCCHHHHHHHHHHHhcc
Confidence              112221   2222222   2345677777775 44577888887777655

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=98.15  E-value=1.8e-06  Score=85.76  Aligned_cols=68  Identities=25%  Similarity=0.472  Sum_probs=54.7

Q ss_pred             CCCCcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc-cHHHHHHHHHHH
Q 036338            9 TVPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP-NRTLQRLIQIWS   77 (408)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~-n~~l~~~I~~~~   77 (408)
                      .+.+++.||+|..+++||+.. .|||.||+.||.+|... +..||.|+..+......+ ....++.+..|.
T Consensus        17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~   86 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLP   86 (391)
T ss_pred             CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcc
Confidence            467789999999999999995 99999999999999987 778999988876655554 344555555553

>PF05536 Neurochondrin: Neurochondrin

Probab=98.05  E-value=0.0003  Score=72.90  Aligned_cols=154  Identities=17%  Similarity=0.237  Sum_probs=116.0

Q ss_pred             hHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH--HHHHHHhccCcccHHHHHHHHhcCC------ChHHHHHHHHH
Q 036338          143 LVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ--HLMNLILKRDQDCLNSLLLVLKQQE------SVDSRIESLRL  214 (408)
Q Consensus       143 ~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~--~~~~~i~~~~~g~i~~Lv~lL~~~~------~~~~~~~Aa~~  214 (408)
                      .+...+.+|++.+|.+ +-.++..+.++..  +++.  ..++.|.  ++=+.+.|-++|+++.      ....+.-|..+
T Consensus         6 ~l~~c~~lL~~~~D~~-rfagL~lvtk~~~--~~~~~~~~~~~v~--~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv   80 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTE-RFAGLLLVTKLLD--ADDEDSQTRRRVF--EAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV   80 (543)
T ss_pred             HHHHHHHHhccCCcHH-HHHHHHHHHHcCC--CchhhHHHHHHHH--HhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence            3556678888777432 2556666667765  3331  1233454  6666899999998731      35567778999


Q ss_pred             HHHhhcCcchh--hHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCC
Q 036338          215 LEFIAGDADSK--VKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNG  292 (408)
Q Consensus       215 L~~La~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~  292 (408)
                      |..++..++..  ..+.   +-||.|++++....+......+..+|..++.+++.+..+++.|+|+.|.+.+.+      
T Consensus        81 L~~f~~~~~~a~~~~~~---~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~------  151 (543)
T PF05536_consen   81 LAAFCRDPELASSPQMV---SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN------  151 (543)
T ss_pred             HHHHcCChhhhcCHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh------
Confidence            99999877643  3443   359999999988734489999999999999999999999999999999999975      


Q ss_pred             CCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338          293 SGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT  326 (408)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~  326 (408)
                                      .+...+.|+.+|.++...
T Consensus       152 ----------------~~~~~E~Al~lL~~Lls~  169 (543)
T PF05536_consen  152 ----------------QSFQMEIALNLLLNLLSR  169 (543)
T ss_pred             ----------------CcchHHHHHHHHHHHHHh
Confidence                            557789999999998763

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=5.4e-06  Score=88.19  Aligned_cols=74  Identities=32%  Similarity=0.432  Sum_probs=67.9

Q ss_pred             CCCCCCcccccCccccCCCceecC-CCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338            7 YITVPSFFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      ..++|++|.-|+..-+|+|||++| .|++.||+.|+.++-+ ..+.|.||++++.+.+.||..++..|+.|..++.
T Consensus       864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~  938 (943)
T KOG2042|consen  864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR  938 (943)
T ss_pred             hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence            346899999999999999999998 9999999999999874 5679999999999999999999999999988754

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.03  E-value=7.7e-06  Score=53.84  Aligned_cols=41  Identities=22%  Similarity=0.250  Sum_probs=36.8

Q ss_pred             CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338          221 DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS  263 (408)
Q Consensus       221 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~  263 (408)
                      +++++..+.+ .|++|+|+++|+++ ++++++.|++||+||+.
T Consensus         1 ~~~~~~~i~~-~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVE-AGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHH-TTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHH-cccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence            3567888888 89999999999987 99999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=98.03  E-value=1.3e-05  Score=77.41  Aligned_cols=51  Identities=25%  Similarity=0.445  Sum_probs=45.7

Q ss_pred             ccccCccccCCCceecC-CCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc
Q 036338           14 FRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP   65 (408)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~   65 (408)
                      +.|.|++++-++||+.+ +||.|+|+-|++++.+ ..+||+++++++.+++++
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~   52 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE   52 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence            57999999999999986 9999999999999985 557999999998877766

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=3.6e-06  Score=82.62  Aligned_cols=72  Identities=24%  Similarity=0.339  Sum_probs=55.6

Q ss_pred             CCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCC-----CcccHHHHHHHHHHHHh
Q 036338            7 YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE-----FVPNRTLQRLIQIWSDS   79 (408)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~-----l~~n~~l~~~I~~~~~~   79 (408)
                      ...++.+|-|.||...+-+||+++|||+||..||.+... ....||.|+.++....     ..+|+.+...|..|+..
T Consensus        78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~  154 (398)
T KOG4159|consen   78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG  154 (398)
T ss_pred             CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            345688999999999999999999999999999999766 4567999998875411     22355666777766543

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.00  E-value=9.4e-06  Score=53.43  Aligned_cols=41  Identities=20%  Similarity=0.182  Sum_probs=37.1

Q ss_pred             CcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          264 SKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       264 ~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      +++++..+++.|+||+|+.+|.++                     +..+++.|+++|.||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~---------------------~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSP---------------------DPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSS---------------------SHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCC---------------------CHHHHHHHHHHHHHHhC
Confidence            357899999999999999999865                     89999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=0.00057  Score=73.79  Aligned_cols=211  Identities=10%  Similarity=0.125  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338          100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ  178 (408)
Q Consensus       100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~  178 (408)
                      -..+.+-..++|.+-. |..|+.+|..++.+..+.-...  .+.+++.++..|.++. ++++-.|+.+++.++..  =.+
T Consensus       348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~--l~~Il~~Vl~~l~Dph-prVr~AA~naigQ~std--l~p  422 (1075)
T KOG2171|consen  348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGN--LPKILPIVLNGLNDPH-PRVRYAALNAIGQMSTD--LQP  422 (1075)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH--HHHHHHHHHhhcCCCC-HHHHHHHHHHHHhhhhh--hcH
Confidence            3445556677887766 9999999999998866554443  3367788888888776 55669999999999862  112


Q ss_pred             HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHH
Q 036338          179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCL  258 (408)
Q Consensus       179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL  258 (408)
                      .+.+.-   ..-.++.|+..+.+..+..++.+|+.+|.|++.........---.+.+.+++.+|.....+.+++.++.||
T Consensus       423 ~iqk~~---~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaI  499 (1075)
T KOG2171|consen  423 EIQKKH---HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAI  499 (1075)
T ss_pred             HHHHHH---HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            222322   34557788888887658899999999999998776543333222345554444555444889999999999


Q ss_pred             HHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhh
Q 036338          259 ITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQD  336 (408)
Q Consensus       259 ~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  336 (408)
                      ...+...+..-.=-=.-.+|.|...|.+.     .            ..+...++.+....+..++. .-|++++...
T Consensus       500 asvA~AA~~~F~pY~d~~Mp~L~~~L~n~-----~------------~~d~r~LrgktmEcisli~~-AVGke~F~~~  559 (1075)
T KOG2171|consen  500 ASVADAAQEKFIPYFDRLMPLLKNFLQNA-----D------------DKDLRELRGKTMECLSLIAR-AVGKEKFLPL  559 (1075)
T ss_pred             HHHHHHHhhhhHhHHHHHHHHHHHHHhCC-----C------------chhhHHHHhhHHHHHHHHHH-HhhhhhhhHh
Confidence            99987543222111234678888888753     0            01234555555444444433 4566666543

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=4.6e-06  Score=76.98  Aligned_cols=47  Identities=19%  Similarity=0.275  Sum_probs=43.0

Q ss_pred             cccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCC
Q 036338           15 RCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSK   61 (408)
Q Consensus        15 ~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~   61 (408)
                      -|+||+.-+.-||.+.|+|.||..||+--.+++..+||.|+.+++++
T Consensus         9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            49999999999999999999999999997777788899999998764

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=97.91  E-value=0.00012  Score=60.43  Aligned_cols=131  Identities=15%  Similarity=0.082  Sum_probs=103.1

Q ss_pred             ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338          142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD  221 (408)
Q Consensus       142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~  221 (408)
                      +.+..||.=.....+.+.++..++-|.|++.  +..|  -..+.  +..++..++.-|... +....+.+...|.|+|.+
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY--DP~N--ys~Lr--ql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d   88 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY--DPIN--YSHLR--QLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLD   88 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc--Ccch--HHHHH--HhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccC
Confidence            4556666666555545556889999999987  3444  45555  788999999999998 999999999999999999


Q ss_pred             cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hHHHHHhcCcHHHHHHHhc
Q 036338          222 ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR-AKTKLINHKLITELGKLIT  285 (408)
Q Consensus       222 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~G~i~~Lv~lL~  285 (408)
                      ..+++.|.+ .+++|..+..+.++ .......|+.+|.-|+.... .|..+..    |+.|+.+.
T Consensus        89 ~~n~~~I~e-a~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v~  147 (173)
T KOG4646|consen   89 KTNAKFIRE-ALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELLS----PAVVRTVQ  147 (173)
T ss_pred             hHHHHHHHH-hcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHHH
Confidence            999999998 88999999999987 77888999999999998765 4444433    44555543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.82  E-value=0.00012  Score=56.46  Aligned_cols=87  Identities=22%  Similarity=0.273  Sum_probs=69.1

Q ss_pred             HHHHHHHH-hcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHH
Q 036338          192 LNSLLLVL-KQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTK  270 (408)
Q Consensus       192 i~~Lv~lL-~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~  270 (408)
                      |+.|++.| ++. +..+|..|+.+|.++          .. ..+++.|+.+++++ ++.++..|+.+|..+-        
T Consensus         1 i~~L~~~l~~~~-~~~vr~~a~~~L~~~----------~~-~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~--------   59 (88)
T PF13646_consen    1 IPALLQLLQNDP-DPQVRAEAARALGEL----------GD-PEAIPALIELLKDE-DPMVRRAAARALGRIG--------   59 (88)
T ss_dssp             HHHHHHHHHTSS-SHHHHHHHHHHHHCC----------TH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH--------
T ss_pred             CHHHHHHHhcCC-CHHHHHHHHHHHHHc----------CC-HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--------
Confidence            67899999 666 999999999998833          22 35699999999886 9999999999999883        


Q ss_pred             HHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 036338          271 LINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVE  321 (408)
Q Consensus       271 ~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~  321 (408)
                        ...+++.|.+++.++                    .+..++..|+.+|.
T Consensus        60 --~~~~~~~L~~~l~~~--------------------~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDD--------------------DDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC---------------------SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCC--------------------CcHHHHHHHHhhcC
Confidence              344899999999863                    35566788877763

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.0035  Score=65.38  Aligned_cols=234  Identities=18%  Similarity=0.216  Sum_probs=161.9

Q ss_pred             HHHHHHHHHhcC--Chh-HHHHHHHHHHHhhhCh----------------hhhhhhhhcCChHHHHHHHhhcCc-chhhH
Q 036338          101 EVKDIIRVAISK--NED-FSENLTKIVAFAKESD----------------ENKTFLAKFDGLVVMLVEILSNVN-DVNML  160 (408)
Q Consensus       101 ~i~~Lv~~L~s~--~~~-~~~Al~~L~~la~~~~----------------~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~  160 (408)
                      ..+.++..|+.+  +++ -..++..+..+....+                ...+.+++..+.|..|+.++...+ .++  
T Consensus        62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR--  139 (970)
T KOG0946|consen   62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVR--  139 (970)
T ss_pred             ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhh--
Confidence            345677777765  455 6678888888865432                123445555589999999998776 555  


Q ss_pred             HHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHH
Q 036338          161 KQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVK  240 (408)
Q Consensus       161 e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~  240 (408)
                      ..++..|.++..  .....++..+. ..+.+|..|+.+|+.. ..-+|-.|...|..|..+...-..++.-..+++.|..
T Consensus       140 ~~aIqLlsalls--~r~~e~q~~ll-~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfs  215 (970)
T KOG0946|consen  140 LYAIQLLSALLS--CRPTELQDALL-VSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFS  215 (970)
T ss_pred             hHHHHHHHHHHh--cCCHHHHHHHH-HCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHH
Confidence            888888888765  33333455442 3788999999999987 7788888999999999988877777766789999999


Q ss_pred             hcccCC---CHHHHHHHHHHHHHhccC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHH
Q 036338          241 SLSLDS---DRRLIEASLSCLITISSS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKA  316 (408)
Q Consensus       241 lL~~~~---~~~~~~~A~~aL~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  316 (408)
                      +++...   ..-+.+.++..|.||-.+ ..|...+.+.+.||.|..+|..+.-|.|.+-+        =+.........|
T Consensus       216 IIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~--------W~~Qrv~Nv~~~  287 (970)
T KOG0946|consen  216 IIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFG--------WSTQRVQNVIEA  287 (970)
T ss_pred             HHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCccccc--------ccHHHHHHHHHH
Confidence            998642   225789999999999885 45888888999999999999875222110000        000122344677


Q ss_pred             HHHHHHHhC--C-----HHHHHHHHhhcCchHHHHHHHHH
Q 036338          317 LRLVEILST--T-----KQGRMEICQDAALLNGVVQKMLK  349 (408)
Q Consensus       317 ~~~L~~L~~--~-----~~~~~~~~~~~g~i~~lv~~l~~  349 (408)
                      +.+++.|..  .     ..+++.+... +++..|-..++.
T Consensus       288 Lqivr~lVsP~Nt~~~~~q~qk~l~ss-~ll~~Lc~il~~  326 (970)
T KOG0946|consen  288 LQIVRSLVSPGNTSSITHQNQKALVSS-HLLDVLCTILMH  326 (970)
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHHc-chHHHHHHHHcC
Confidence            788888765  1     2233444443 666666665554

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.79  E-value=1e-05  Score=70.04  Aligned_cols=44  Identities=20%  Similarity=0.287  Sum_probs=37.7

Q ss_pred             ccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338           14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVL   58 (408)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l   58 (408)
                      |.|-||.+-++.||++.|||.||..|-.+-... ...|-+|++..
T Consensus       197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t  240 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT  240 (259)
T ss_pred             eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence            899999999999999999999999997765553 45699998753

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=1.3e-05  Score=73.98  Aligned_cols=55  Identities=18%  Similarity=0.249  Sum_probs=42.6

Q ss_pred             ccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHH
Q 036338           14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQ   70 (408)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~   70 (408)
                      |-|-||.+.|.+||+..|||+||..|-..-+.. ...|++|++... ..+.+...|.
T Consensus       242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~-g~~~~akeL~  296 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH-GSFNVAKELL  296 (313)
T ss_pred             ccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc-cccchHHHHH
Confidence            679999999999999999999999998777664 356999998642 2333444443

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=0.0014  Score=65.57  Aligned_cols=240  Identities=12%  Similarity=0.083  Sum_probs=169.0

Q ss_pred             HHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHH
Q 036338          118 ENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLL  197 (408)
Q Consensus       118 ~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~  197 (408)
                      .++..|..+++.--..|.-+.+. .++++|+.+|+.++ ..+.-.++..+.|+..  .=++ ++..+.  ..|+|..|+.
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~-~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv--~fsn-L~~~fL--~~~iIdvl~~  480 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDY-PIVELLIDALSNPE-IMIEFPDTIDICNKVV--PFSN-LGAGFL--EKSIIDVLVN  480 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhcccc-chHHHHHHHhcCcc-ceeeccchhhhhheee--eccc-hHHHHH--HhhHHHHHHH
Confidence            34455666665545567778888 89999999999876 2222556677777765  2233 356565  8899999999


Q ss_pred             HHhcCCChHHHHHHHHHHHHhhcCcchh--hHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc-ch---HH--
Q 036338          198 VLKQQESVDSRIESLRLLEFIAGDADSK--VKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK-RA---KT--  269 (408)
Q Consensus       198 lL~~~~~~~~~~~Aa~~L~~La~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~-~n---~~--  269 (408)
                      ++.+. +...|.+..|+|..+-.+.++.  ..... .-++..++.+..++ .-.+++..+..|+|+.-+. .|   +.  
T Consensus       481 ~v~sK-DdaLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~  557 (743)
T COG5369         481 LVMSK-DDALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVF  557 (743)
T ss_pred             Hhhcc-hhhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeE
Confidence            99988 8899999999999998776544  23333 33578899999887 7889999999999985522 22   11  


Q ss_pred             -HHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhh-cCchHHHHHH
Q 036338          270 -KLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQD-AALLNGVVQK  346 (408)
Q Consensus       270 -~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~g~i~~lv~~  346 (408)
                       ++.- .=....|++.+.+-                     .+...+..+.+|.+++.++++...++.. ...+..+-+.
T Consensus       558 ~K~~p~~ylfk~l~~k~e~~---------------------np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~ei  616 (743)
T COG5369         558 IKATPRRYLFKRLIDKYEEN---------------------NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEI  616 (743)
T ss_pred             EecChHHHHHHHHHHHHHhc---------------------CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHH
Confidence             1111 11445677777653                     5566666789999998888888777753 3444444443


Q ss_pred             HHH-----------------------------------------------------------------------------
Q 036338          347 MLK-----------------------------------------------------------------------------  349 (408)
Q Consensus       347 l~~-----------------------------------------------------------------------------  349 (408)
                      |..                                                                             
T Consensus       617 l~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~  696 (743)
T COG5369         617 LDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSE  696 (743)
T ss_pred             HHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCc
Confidence            333                                                                             


Q ss_pred             ---H--HHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036338          350 ---T--AQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFR  388 (408)
Q Consensus       350 ---~--~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~  388 (408)
                         +  -+-.+..+.|+..++..+|.+.++.+|+++..+|..++
T Consensus       697 vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         697 VTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENLR  740 (743)
T ss_pred             cchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence               1  22234567889999999999999999999999998775

>PF05536 Neurochondrin: Neurochondrin

Probab=97.76  E-value=0.0017  Score=67.48  Aligned_cols=156  Identities=15%  Similarity=0.162  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhh---hhhhhhcCChHHHHHHHhhcCc------chhhHHHHHHHHH
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDEN---KTFLAKFDGLVVMLVEILSNVN------DVNMLKQVIRVLD  168 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~---r~~i~~~~G~i~~Lv~lL~s~~------~~~~~e~A~~~L~  168 (408)
                      ...+...+..|++.+.+ |..++--+..+.+.++..   ++.|.++ =+...|-++|.++.      ....+.-|+.+|.
T Consensus         4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~a-ig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~   82 (543)
T PF05536_consen    4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEA-IGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA   82 (543)
T ss_pred             hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHh-cChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence            45678888999988744 889999999998876643   4457777 45799999998844      1224567888999


Q ss_pred             HhcccccchHH-HHHHHhccCcccHHHHHHHHhcCCCh-HHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCC
Q 036338          169 LILNKIEDQQH-LMNLILKRDQDCLNSLLLVLKQQESV-DSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDS  246 (408)
Q Consensus       169 ~L~~~~~~~~~-~~~~i~~~~~g~i~~Lv~lL~~~~~~-~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~  246 (408)
                      .++.   +++- ....+.    +.||.|++.+.++ +. ++...+..+|..++..++++..+.. .|+++.|++.+.+  
T Consensus        83 ~f~~---~~~~a~~~~~~----~~IP~Lle~l~~~-s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~--  151 (543)
T PF05536_consen   83 AFCR---DPELASSPQMV----SRIPLLLEILSSS-SDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN--  151 (543)
T ss_pred             HHcC---ChhhhcCHHHH----HHHHHHHHHHHcC-CchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh--
Confidence            8886   3331 012222    6799999999988 55 9999999999999999999999998 8999999999987  


Q ss_pred             CHHHHHHHHHHHHHhccCcc
Q 036338          247 DRRLIEASLSCLITISSSKR  266 (408)
Q Consensus       247 ~~~~~~~A~~aL~~Ls~~~~  266 (408)
                      .+...+.|+.+|.+++....
T Consensus       152 ~~~~~E~Al~lL~~Lls~~~  171 (543)
T PF05536_consen  152 QSFQMEIALNLLLNLLSRLG  171 (543)
T ss_pred             CcchHHHHHHHHHHHHHhcc
Confidence            45788999999999876443

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.72  E-value=0.0024  Score=65.34  Aligned_cols=120  Identities=16%  Similarity=0.096  Sum_probs=96.2

Q ss_pred             CcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc
Q 036338          188 DQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD-ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR  266 (408)
Q Consensus       188 ~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~  266 (408)
                      ...++.+||.+|..+ +..++..+..+|.|+... .+.|..+.. .|+|+.|.+++.+. ++..+..++|+|+++..+.+
T Consensus       417 ~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~-~ngId~l~s~~~~~-~~n~r~~~~~~Lr~l~f~~d  493 (678)
T KOG1293|consen  417 RNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLR-NNGIDILESMLTDP-DFNSRANSLWVLRHLMFNCD  493 (678)
T ss_pred             cchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHH-cCcHHHHHHHhcCC-CchHHHHHHHHHHHHHhcch
Confidence            567899999999888 889999999999999875 467777777 79999999999997 88999999999999999877


Q ss_pred             hHHHHH-hcCcHH-HHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHH
Q 036338          267 AKTKLI-NHKLIT-ELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQGRM  331 (408)
Q Consensus       267 n~~~~~-~~G~i~-~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~  331 (408)
                      +..+.. -+..-. -++.+..+                     ++..++|.+...|+||..+ .+.-.
T Consensus       494 e~~k~~~~~ki~a~~i~~l~nd---------------------~d~~Vqeq~fqllRNl~c~~~~svd  540 (678)
T KOG1293|consen  494 EEEKFQLLAKIPANLILDLIND---------------------PDWAVQEQCFQLLRNLTCNSRKSVD  540 (678)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhC---------------------CCHHHHHHHHHHHHHhhcCcHHHHH
Confidence            655444 333333 45555554                     4999999999999999754 34333

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.71  E-value=3.5e-05  Score=58.37  Aligned_cols=46  Identities=20%  Similarity=0.341  Sum_probs=35.6

Q ss_pred             ccccCccccCCC-ceec-CCCCcccHhhHHHHHhcC--CCCCCCcccccC
Q 036338           14 FRCPISLDVMKS-PVSL-CTGVTYDRASIQRWLDSG--NNTCPATMQVLQ   59 (408)
Q Consensus        14 ~~Cpi~~~~~~d-Pv~~-~cgh~f~r~cI~~~~~~~--~~~CP~~~~~l~   59 (408)
                      -.||.|...-.| |++. .|||.|-..||.+|+++.  ...||.||++..
T Consensus        33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            346666555555 7766 699999999999999863  468999998764

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.69  E-value=0.0079  Score=56.56  Aligned_cols=256  Identities=12%  Similarity=0.124  Sum_probs=161.9

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH  179 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~  179 (408)
                      ....+++.+++.++. +..|+..+..+...  ..+.......-.++.+..++.....   .+.|+.+|.|++.   +.. 
T Consensus         4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~---~~~a~~alVnlsq---~~~-   74 (353)
T KOG2973|consen    4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP---AEPAATALVNLSQ---KEE-   74 (353)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc---ccHHHHHHHHHHh---hHH-
Confidence            355788999999988 88899888888765  4444444332567778888876552   3789999999985   333 


Q ss_pred             HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhh--h----cChHHHHHHhcccCCC-HHHHH
Q 036338          180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAE--R----DGLLAETVKSLSLDSD-RRLIE  252 (408)
Q Consensus       180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~--~----~g~i~~Lv~lL~~~~~-~~~~~  252 (408)
                      +++.+.  +. .+..++..+.+. ....-...+.+|.||+..++....+..  .    .|.+...+.+...+.+ ..-..
T Consensus        75 l~~~ll--~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~  150 (353)
T KOG2973|consen   75 LRKKLL--QD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFH  150 (353)
T ss_pred             HHHHHH--HH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchh
Confidence            355554  33 788888888776 556667788899999998875555432  1    3445544445544322 13445


Q ss_pred             HHHHHHHHhccCcchHHHHHhcCcHHHHHHH-hccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHH
Q 036338          253 ASLSCLITISSSKRAKTKLINHKLITELGKL-ITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRM  331 (408)
Q Consensus       253 ~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~l-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~  331 (408)
                      .-+-.+.||++....|..+.+...+|.=.-+ +.++                    ++..=+.-.+++|.|.|-....+.
T Consensus       151 ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~--------------------~s~vRr~GvagtlkN~cFd~~~h~  210 (353)
T KOG2973|consen  151 YLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSE--------------------DSQVRRGGVAGTLKNCCFDAKLHE  210 (353)
T ss_pred             HHHHHHHHHhhhhhhhhHhcchhhhhHhhhhccccc--------------------chhhhccchHHHHHhhhccchhHH
Confidence            6677888999999999888866544322222 2221                    111223455678888777666666


Q ss_pred             HHHhhc-CchHHHHHHHHH---------------------------------------------HHHHHHHhcCcHHHHH
Q 036338          332 EICQDA-ALLNGVVQKMLK---------------------------------------------TAQEAVSSSNVLTKIL  365 (408)
Q Consensus       332 ~~~~~~-g~i~~lv~~l~~---------------------------------------------~~~~~~~~~g~~~~Ll  365 (408)
                      .+.... ..+|.++--|..                                             ..-+++++.-++.+++
T Consensus       211 ~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpil  290 (353)
T KOG2973|consen  211 VLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPIL  290 (353)
T ss_pred             HHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHH
Confidence            665421 233333322211                                             2333344444456666


Q ss_pred             HHHhh-cCCHHHHHHHHHHHHHHhh
Q 036338          366 LLMQS-NCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       366 ~ll~~-~~~~~~k~~A~~lL~~l~~  389 (408)
                      ..+.. ...+..++++-.+..++..
T Consensus       291 RElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  291 RELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            77754 5678899999888888776

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=5.6e-05  Score=76.24  Aligned_cols=75  Identities=29%  Similarity=0.371  Sum_probs=67.5

Q ss_pred             cCCCCCCcccccCccccCCCceecC-CCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338            6 LYITVPSFFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      ..-++|++|.-|+...+|+|||+++ +|-+.+|+.|...+-. ..+.|.-|.|++.++.+||-.||+.|-.|....+
T Consensus       847 D~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~  922 (929)
T COG5113         847 DMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKG  922 (929)
T ss_pred             hccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence            4557999999999999999999997 8999999999998774 4579999999999999999999999999977655

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.68  E-value=0.0035  Score=64.96  Aligned_cols=210  Identities=19%  Similarity=0.160  Sum_probs=136.2

Q ss_pred             cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccCHHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCC
Q 036338           64 VPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDG  142 (408)
Q Consensus        64 ~~n~~l~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G  142 (408)
                      ..|+.+|++.--+...-...-+.    .      ..-.+..+.+.|.++++. +..|++.|.++..  ++...      -
T Consensus        53 s~~~~~Krl~yl~l~~~~~~~~~----~------~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~------~  114 (526)
T PF01602_consen   53 SKDLELKRLGYLYLSLYLHEDPE----L------LILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAE------P  114 (526)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTSHH----H------HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHH------H
T ss_pred             CCCHHHHHHHHHHHHHHhhcchh----H------HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhh------H
Confidence            56677777766555543210000    0      022456777888888877 8889999998863  33332      3


Q ss_pred             hHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc
Q 036338          143 LVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA  222 (408)
Q Consensus       143 ~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~  222 (408)
                      .++.+..+|.++. .-++..|+.++..+..  .+++    .+.  .. .++.+..+|.+. +..++..|+.++..+..++
T Consensus       115 l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~--~~p~----~~~--~~-~~~~l~~lL~d~-~~~V~~~a~~~l~~i~~~~  183 (526)
T PF01602_consen  115 LIPDVIKLLSDPS-PYVRKKAALALLKIYR--KDPD----LVE--DE-LIPKLKQLLSDK-DPSVVSAALSLLSEIKCND  183 (526)
T ss_dssp             HHHHHHHHHHSSS-HHHHHHHHHHHHHHHH--HCHC----CHH--GG-HHHHHHHHTTHS-SHHHHHHHHHHHHHHHCTH
T ss_pred             HHHHHHHHhcCCc-hHHHHHHHHHHHHHhc--cCHH----HHH--HH-HHHHHhhhccCC-cchhHHHHHHHHHHHccCc
Confidence            4666888888776 3344889888888875  2222    232  33 789999999888 9999999999999992222


Q ss_pred             chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCC
Q 036338          223 DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNG  302 (408)
Q Consensus       223 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~  302 (408)
                      +.-..+.  ...+..|.+++... ++-.+...++.|..++........-  ...++.+..+|++.               
T Consensus       184 ~~~~~~~--~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~---------------  243 (526)
T PF01602_consen  184 DSYKSLI--PKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSS---------------  243 (526)
T ss_dssp             HHHTTHH--HHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHH---------------
T ss_pred             chhhhhH--HHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhcc---------------
Confidence            2111221  23566666666665 8888888889888888754422211  45677777777753               


Q ss_pred             CCCCCCCcchHHHHHHHHHHHhCCHH
Q 036338          303 NGSGNGTVLITEKALRLVEILSTTKQ  328 (408)
Q Consensus       303 ~~~~~~~~~~~~~a~~~L~~L~~~~~  328 (408)
                            ++.+.-.+..++..+...+.
T Consensus       244 ------~~~V~~e~~~~i~~l~~~~~  263 (526)
T PF01602_consen  244 ------SPSVVYEAIRLIIKLSPSPE  263 (526)
T ss_dssp             ------HHHHHHHHHHHHHHHSSSHH
T ss_pred             ------ccHHHHHHHHHHHHhhcchH
Confidence                  66777777777777776655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.62  E-value=0.0033  Score=64.36  Aligned_cols=148  Identities=16%  Similarity=0.192  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHH
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSL  195 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~L  195 (408)
                      ..+|+-.+..++..-...|.-+... .++.+||.+|..++ ..+...++++|.|+..   +-...|..+.  ..|+|..+
T Consensus       394 ~aaa~l~~~s~srsV~aL~tg~~~~-dv~~plvqll~dp~-~~i~~~~lgai~NlVm---efs~~kskfl--~~ngId~l  466 (678)
T KOG1293|consen  394 VAAALLCLKSFSRSVSALRTGLKRN-DVAQPLVQLLMDPE-IMIMGITLGAICNLVM---EFSNLKSKFL--RNNGIDIL  466 (678)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccc-hhHHHHHHHhhCcc-hhHHHHHHHHHHHHHh---hcccHHHHHH--HcCcHHHH
Confidence            5566777777766555666667777 89999999997666 3344889999999986   2222355555  89999999


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcC-hHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hHHHHH
Q 036338          196 LLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDG-LLAETVKSLSLDSDRRLIEASLSCLITISSSKR-AKTKLI  272 (408)
Q Consensus       196 v~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g-~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~  272 (408)
                      ...+.+. +..+|..+.|+|.++..+.+......--.. ....++.+..++ +..+++.+...|+||.-+.. ....++
T Consensus       467 ~s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fqllRNl~c~~~~svdfll  543 (678)
T KOG1293|consen  467 ESMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP-DWAVQEQCFQLLRNLTCNSRKSVDFLL  543 (678)
T ss_pred             HHHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC-CHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence            9999998 999999999999999988776555442122 234566667776 99999999999999976643 333344

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.0039  Score=67.56  Aligned_cols=211  Identities=11%  Similarity=0.144  Sum_probs=130.0

Q ss_pred             HHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc
Q 036338          144 VVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA  222 (408)
Q Consensus       144 i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~  222 (408)
                      .+.+-.+|.|.+ ..+  ..|+.+|..++.  +....++..+    ..+++.++..|+.+ ++.+|..|+.+|+.++.+-
T Consensus       350 ~~~l~~~l~S~~w~~R--~AaL~Als~i~E--Gc~~~m~~~l----~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl  420 (1075)
T KOG2171|consen  350 FEALEAMLQSTEWKER--HAALLALSVIAE--GCSDVMIGNL----PKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDL  420 (1075)
T ss_pred             HHHHHHHhcCCCHHHH--HHHHHHHHHHHc--ccHHHHHHHH----HHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhh
Confidence            344555556665 444  788888888875  4444333322    46778888888888 9999999999999999863


Q ss_pred             --chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHH--hcCcHHHHHHHhccCCCCCCCCCCCC
Q 036338          223 --DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLI--NHKLITELGKLITDGHNGNGSGNGNG  298 (408)
Q Consensus       223 --~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~--~~G~i~~Lv~lL~~~~~~~~~~~~~~  298 (408)
                        +....-.  .-.++.|+..+.+..+++++..|+.||.|++..-.. ..+.  =.+.+..++.+|..            
T Consensus       421 ~p~iqk~~~--e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~~------------  485 (1075)
T KOG2171|consen  421 QPEIQKKHH--ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLLQ------------  485 (1075)
T ss_pred             cHHHHHHHH--HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHhc------------
Confidence              3333332  356778999998877889999999999999875331 1111  23455534444443            


Q ss_pred             CCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHHHHHHH--HHhcCcHHHHHHHH-hhcCCH
Q 036338          299 NGNGNGSGNGTVLITEKALRLVEILSTT-KQGRMEICQDAALLNGVVQKMLKTAQEA--VSSSNVLTKILLLM-QSNCTP  374 (408)
Q Consensus       299 ~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~~~~~~--~~~~g~~~~Ll~ll-~~~~~~  374 (408)
                              ++.+.+++.++.++...|.. .+.......  ..+|.|.+.|.+...++  .++...+.-+ .++ ..-+.+
T Consensus       486 --------~~~~~v~e~vvtaIasvA~AA~~~F~pY~d--~~Mp~L~~~L~n~~~~d~r~LrgktmEci-sli~~AVGke  554 (1075)
T KOG2171|consen  486 --------SSKPYVQEQAVTAIASVADAAQEKFIPYFD--RLMPLLKNFLQNADDKDLRELRGKTMECL-SLIARAVGKE  554 (1075)
T ss_pred             --------CCchhHHHHHHHHHHHHHHHHhhhhHhHHH--HHHHHHHHHHhCCCchhhHHHHhhHHHHH-HHHHHHhhhh
Confidence                    34889999999999999863 222222322  45666666554411011  1111111111 222 223445


Q ss_pred             HHHHHHHHHHHHHhh
Q 036338          375 AVRQMSADLLKIFRV  389 (408)
Q Consensus       375 ~~k~~A~~lL~~l~~  389 (408)
                      +-.+-|..++.++..
T Consensus       555 ~F~~~a~eliqll~~  569 (1075)
T KOG2171|consen  555 KFLPLAEELIQLLLE  569 (1075)
T ss_pred             hhhHhHHHHHHHHHh
Confidence            566667777777666

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.61  E-value=0.0039  Score=61.51  Aligned_cols=183  Identities=16%  Similarity=0.181  Sum_probs=131.5

Q ss_pred             hhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHH
Q 036338          132 ENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIE  210 (408)
Q Consensus       132 ~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~  210 (408)
                      ...+.|..- |++..|++++.++. ..++.-++...|-.+..   ..|  +..++  ..| +..++.+-+....++....
T Consensus       171 ~LCD~iR~~-~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~---aeN--~d~va--~~~-~~~Il~lAK~~e~~e~aR~  241 (832)
T KOG3678|consen  171 GLCDAIRLD-GGLDLLLRMFQAPNLETSVRVEAARLLEQILV---AEN--RDRVA--RIG-LGVILNLAKEREPVELARS  241 (832)
T ss_pred             hhhhHhhcc-chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh---hhh--hhHHh--hcc-chhhhhhhhhcCcHHHHHH
Confidence            345667776 99999999999988 55556788888887764   334  55554  333 4444444443337888899


Q ss_pred             HHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc--chHHHHHhcCcHHHHHHHhccC
Q 036338          211 SLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK--RAKTKLINHKLITELGKLITDG  287 (408)
Q Consensus       211 Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~--~n~~~~~~~G~i~~Lv~lL~~~  287 (408)
                      .+.+|.+|-.+. +.+..+.. .|++..++-..+.. +|...+.++-||.|...+.  ..+.+|++..+-.-|.-|-.+.
T Consensus       242 ~~~il~~mFKHSeet~~~Lva-a~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk  319 (832)
T KOG3678|consen  242 VAGILEHMFKHSEETCQRLVA-AGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK  319 (832)
T ss_pred             HHHHHHHHhhhhHHHHHHHHh-hcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch
Confidence            999999998764 57777777 78899888888775 8999999999999988754  5788999887777777666543


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHH
Q 036338          288 HNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKML  348 (408)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~  348 (408)
                                           |....-.|+-+...|+...+--..+..+ |.+. ||+-++
T Consensus       320 ---------------------Del~R~~AClAV~vlat~KE~E~~VrkS-~Tla-LVEPlv  357 (832)
T KOG3678|consen  320 ---------------------DELLRLHACLAVAVLATNKEVEREVRKS-GTLA-LVEPLV  357 (832)
T ss_pred             ---------------------HHHHHHHHHHHHhhhhhhhhhhHHHhhc-cchh-hhhhhh
Confidence                                 7778888888888888765544444333 4333 444443

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=4.4e-05  Score=73.22  Aligned_cols=46  Identities=20%  Similarity=0.380  Sum_probs=39.9

Q ss_pred             ccccCccccCCC---ceecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338           14 FRCPISLDVMKS---PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        14 ~~Cpi~~~~~~d---Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      ++|-||+|-|..   =+++||+|.|=..||..|+......||+|++...
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~  278 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR  278 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence            599999999987   4568999999999999999877667999998643

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=8.3e-05  Score=67.94  Aligned_cols=48  Identities=21%  Similarity=0.184  Sum_probs=40.4

Q ss_pred             CCcccccCccccCCCceec-CCCCcccHhhHHHHHhc-CCCCCCCccccc
Q 036338           11 PSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDS-GNNTCPATMQVL   58 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~-~~~~CP~~~~~l   58 (408)
                      ..+..||+|++.-..|.++ +|||.||.-||..-+.. -..+||.|+.+.
T Consensus       237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~  286 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV  286 (298)
T ss_pred             cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence            4567899999999999988 59999999999986543 367899999764

>PTZ00429 beta-adaptin; Provisional

Probab=97.51  E-value=0.033  Score=59.81  Aligned_cols=177  Identities=14%  Similarity=0.115  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      .+.+..|-+.|.+.+.. +.++++.+-.........-       -+.+.++.++.+.+ .+...-.--.|.+++.  .+.
T Consensus        31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS-------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~--~~p  100 (746)
T PTZ00429         31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS-------YLFVDVVKLAPSTD-LELKKLVYLYVLSTAR--LQP  100 (746)
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch-------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcc--cCh
Confidence            45677777888887766 8889987766653332222       34555677777766 2222444445555554  232


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                      +  ..++      ++..|.+=+.+. ++..|..|.+.|..+-.     ..+.+  -.++++.+.|.+. ++-+|+.|+-+
T Consensus       101 e--lalL------aINtl~KDl~d~-Np~IRaLALRtLs~Ir~-----~~i~e--~l~~~lkk~L~D~-~pYVRKtAala  163 (746)
T PTZ00429        101 E--KALL------AVNTFLQDTTNS-SPVVRALAVRTMMCIRV-----SSVLE--YTLEPLRRAVADP-DPYVRKTAAMG  163 (746)
T ss_pred             H--HHHH------HHHHHHHHcCCC-CHHHHHHHHHHHHcCCc-----HHHHH--HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence            2  1223      377777777888 88899888888777652     22332  3567788888886 89999999999


Q ss_pred             HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      +..+-....  ..+.+.|.++.|.++|.+.                     ++.++..|+.+|..+..
T Consensus       164 i~Kly~~~p--elv~~~~~~~~L~~LL~D~---------------------dp~Vv~nAl~aL~eI~~  208 (746)
T PTZ00429        164 LGKLFHDDM--QLFYQQDFKKDLVELLNDN---------------------NPVVASNAAAIVCEVND  208 (746)
T ss_pred             HHHHHhhCc--ccccccchHHHHHHHhcCC---------------------CccHHHHHHHHHHHHHH
Confidence            999866433  2334678888999988753                     88999999999999875

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=6.8e-05  Score=67.26  Aligned_cols=53  Identities=13%  Similarity=0.353  Sum_probs=46.1

Q ss_pred             CcccccCccccCCCce----ecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc
Q 036338           12 SFFRCPISLDVMKSPV----SLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP   65 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dPv----~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~   65 (408)
                      ..|.||+|.+.+.+.+    .-+|||.|+.+|.++++. +...||+|+.++..+++++
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~  276 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIG  276 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEe
Confidence            6799999999999954    348999999999999987 4668999999999988765

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.48  E-value=0.00062  Score=52.35  Aligned_cols=88  Identities=24%  Similarity=0.283  Sum_probs=66.5

Q ss_pred             HHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc
Q 036338          144 VVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD  223 (408)
Q Consensus       144 i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~  223 (408)
                      ||.|++.|.++.+..+...|+.+|..+-    +            ..+++.|+.++++. +..+|..|+.+|..+.    
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----~------------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~----   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----D------------PEAIPALIELLKDE-DPMVRRAAARALGRIG----   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----H------------HHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH----
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----C------------HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----
Confidence            6889999944443445588888887542    1            13478899999888 9999999999999872    


Q ss_pred             hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338          224 SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI  259 (408)
Q Consensus       224 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~  259 (408)
                            . ...++.|.+++.++.+..++..|+.+|.
T Consensus        60 ------~-~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 ------D-PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ------H-HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ------C-HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                  3 5579999999988656677898988874

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=4.3e-05  Score=79.41  Aligned_cols=44  Identities=27%  Similarity=0.583  Sum_probs=40.1

Q ss_pred             cccccCccccCCC-----ceecCCCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338           13 FFRCPISLDVMKS-----PVSLCTGVTYDRASIQRWLDSGNNTCPATMQV   57 (408)
Q Consensus        13 ~~~Cpi~~~~~~d-----Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~   57 (408)
                      +-.|+||.+.|..     |-.++|||.|+..|+.+|+++ ..+||.||..
T Consensus       291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~  339 (543)
T KOG0802|consen  291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTV  339 (543)
T ss_pred             CCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhh
Confidence            6789999999999     778899999999999999997 5679999974

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.44  E-value=0.042  Score=53.82  Aligned_cols=221  Identities=14%  Similarity=0.115  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHhcCChh--HHHHHHHHHHHhhhChhhhhhhh-hc-----CChHHHHHHHhhcCcchhhHHHHHHHHHHh
Q 036338           99 QDEVKDIIRVAISKNED--FSENLTKIVAFAKESDENKTFLA-KF-----DGLVVMLVEILSNVNDVNMLKQVIRVLDLI  170 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~--~~~Al~~L~~la~~~~~~r~~i~-~~-----~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L  170 (408)
                      +..+..++..++..+.+  ....+..+..+..++. .|..+. ..     .-.-++.+.+|...+. -..+....+|..+
T Consensus        64 ~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~-sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~-~iv~~~~~Ils~l  141 (442)
T KOG2759|consen   64 AQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDR-SRVDLFHDYAHKLKRTEWLSFLNLLNRQDT-FIVEMSFRILSKL  141 (442)
T ss_pred             HHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCc-hHHHHHHHHHHhhhccchHHHHHHHhcCCh-HHHHHHHHHHHHH
Confidence            34566777777765544  5556666666665533 232221 11     0224566777766551 1224456666666


Q ss_pred             cccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhc-ccCCCHH
Q 036338          171 LNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSL-SLDSDRR  249 (408)
Q Consensus       171 ~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~  249 (408)
                      +.  .....+....   ..=....|-..++++.+.+...-|+++|..+...++.|..+.. ..++..|+..+ .+..+.+
T Consensus       142 a~--~g~~~~~~~e---~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~-adg~~~l~~~l~s~~~~~Q  215 (442)
T KOG2759|consen  142 AC--FGNCKMELSE---LDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVI-ADGVSLLIRILASTKCGFQ  215 (442)
T ss_pred             HH--hccccccchH---HHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeee-cCcchhhHHHHhccCcchh
Confidence            53  1111000000   0112445556666644778889999999999999999999998 66788899988 5545789


Q ss_pred             HHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCH--
Q 036338          250 LIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTK--  327 (408)
Q Consensus       250 ~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~--  327 (408)
                      ++=...-++|-|..++.-...+...+.|+.|.+.+++.                    ....+..-.++++.|+....  
T Consensus       216 lQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~--------------------~KEKV~Rivlai~~Nll~k~~~  275 (442)
T KOG2759|consen  216 LQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKES--------------------TKEKVTRIVLAIFRNLLDKGPD  275 (442)
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhccCch
Confidence            99999999999999988888887899999999999873                    46789999999999998765  


Q ss_pred             -----HHHHHHHhhcCchHHHHHHHHH
Q 036338          328 -----QGRMEICQDAALLNGVVQKMLK  349 (408)
Q Consensus       328 -----~~~~~~~~~~g~i~~lv~~l~~  349 (408)
                           +...+++.  +.++.-++.|..
T Consensus       276 ~~~~k~~~~~mv~--~~v~k~l~~L~~  300 (442)
T KOG2759|consen  276 RETKKDIASQMVL--CKVLKTLQSLEE  300 (442)
T ss_pred             hhHHHHHHHHHHh--cCchHHHHHHHh
Confidence                 33344554  456666665544

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=97.42  E-value=7e-05  Score=73.96  Aligned_cols=51  Identities=20%  Similarity=0.311  Sum_probs=43.3

Q ss_pred             CCcccccCccccCCCceecCCCCcccHhhHHHHHhc----CCCCCCCcccccCCC
Q 036338           11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS----GNNTCPATMQVLQSK   61 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~----~~~~CP~~~~~l~~~   61 (408)
                      ..+..|-+|.+.-.||+..+|-|+|||-||.+|+..    .+.+||.|...++-+
T Consensus       534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            345789999999999999999999999999998753    346899999887654

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.0072  Score=62.09  Aligned_cols=176  Identities=12%  Similarity=0.089  Sum_probs=122.6

Q ss_pred             CChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHH-HhccC--cccHHHHHHHHhcCCChHHHHHHHHHHH
Q 036338          141 DGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNL-ILKRD--QDCLNSLLLVLKQQESVDSRIESLRLLE  216 (408)
Q Consensus       141 ~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~-i~~~~--~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~  216 (408)
                      +.++|.|..+|.+++ ...  |-|..+|..++.   |+.+.-.. .. ..  .-.||.++.+.++. ++..|.+|...+.
T Consensus       127 pelLp~L~~~L~s~d~n~~--EgA~~AL~KIcE---Dsa~~lds~~~-~rpl~~mipkfl~f~~h~-spkiRs~A~~cvN  199 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTC--EGAFGALQKICE---DSAQFLDSDVL-TRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVN  199 (885)
T ss_pred             hhHHHHHHHHhcCCccccc--chhHHHHHHHHh---hhHHHHhhhcc-cCchHHhHHHHHHHHhCC-ChhHHHHHHhhhh
Confidence            457899999999987 444  999999999985   33321111 00 01  24589999999999 9999999999998


Q ss_pred             HhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCC
Q 036338          217 FIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNG  296 (408)
Q Consensus       217 ~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~  296 (408)
                      ..-......-.... ..+++.|..+-.+. ++++++..+.+|.-|-.....|-.=-=.++|..++..-+++         
T Consensus       200 q~i~~~~qal~~~i-D~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~---------  268 (885)
T KOG2023|consen  200 QFIIIQTQALYVHI-DKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV---------  268 (885)
T ss_pred             heeecCcHHHHHHH-HHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCc---------
Confidence            77655433333322 45788888888775 99999999999999876544332222356777777777754         


Q ss_pred             CCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhh-cCchHHHHHH
Q 036338          297 NGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQD-AALLNGVVQK  346 (408)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~g~i~~lv~~  346 (408)
                                  +..+.-+|+.....+|..+.-+..+..+ ...||.|++-
T Consensus       269 ------------dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~  307 (885)
T KOG2023|consen  269 ------------DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSG  307 (885)
T ss_pred             ------------chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHcc
Confidence                        6778899999999999877544444433 1456666554

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.38  E-value=7.7e-05  Score=72.52  Aligned_cols=48  Identities=21%  Similarity=0.543  Sum_probs=39.1

Q ss_pred             CCCCCCcccccCccccCCCce----ecCCCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338            7 YITVPSFFRCPISLDVMKSPV----SLCTGVTYDRASIQRWLDSGNNTCPATMQV   57 (408)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv----~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~   57 (408)
                      +..+.+-.+||+|++-|.+-|    ++.|.|+|--.|+.+||..   +||+||--
T Consensus       169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~  220 (493)
T KOG0804|consen  169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYC  220 (493)
T ss_pred             CCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhh
Confidence            334455668999999999876    4579999999999999875   79998754

>PF04641 Rtf2: Rtf2 RING-finger

Probab=97.38  E-value=0.00014  Score=68.49  Aligned_cols=54  Identities=15%  Similarity=0.418  Sum_probs=43.3

Q ss_pred             CCCcccccCccccCCC--ce-ec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc
Q 036338           10 VPSFFRCPISLDVMKS--PV-SL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP   65 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~d--Pv-~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~   65 (408)
                      -...|.||||+..|..  +. .+ +|||.|+..+|.+.-  ....||+|+++|...|+++
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~  167 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP  167 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence            3567999999999954  33 33 899999999999983  3456999999999877654

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.35  E-value=0.03  Score=55.38  Aligned_cols=165  Identities=16%  Similarity=0.158  Sum_probs=121.7

Q ss_pred             HHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHh
Q 036338          108 VAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLIL  185 (408)
Q Consensus       108 ~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~  185 (408)
                      .+=+.+.+ +..+.+.+|.+..+ ...-..+.+. +.--.++..|.... ...-.++|++.+..+..  ....  .+.+ 
T Consensus        33 ~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l-~id~~ii~SL~~~~~~~~ER~QALkliR~~l~--~~~~--~~~~-  105 (371)
T PF14664_consen   33 MLLSDSKEVRAAGYRILRYLISD-EESLQILLKL-HIDIFIIRSLDRDNKNDVEREQALKLIRAFLE--IKKG--PKEI-  105 (371)
T ss_pred             HHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHc-CCchhhHhhhcccCCChHHHHHHHHHHHHHHH--hcCC--cccC-
Confidence            33344466 88888889888775 5667777777 77777888887655 21113789988877653  2111  1223 


Q ss_pred             ccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc
Q 036338          186 KRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK  265 (408)
Q Consensus       186 ~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~  265 (408)
                        ..|++..++.+..+. +...|.-+..+|..++..+.  +.+.. .|++..|++.+-++ ..+..+..+.++..+-..+
T Consensus       106 --~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P--~lv~~-~gG~~~L~~~l~d~-~~~~~~~l~~~lL~lLd~p  178 (371)
T PF14664_consen  106 --PRGVVRALVAIAEHE-DDRLRRICLETLCELALLNP--ELVAE-CGGIRVLLRALIDG-SFSISESLLDTLLYLLDSP  178 (371)
T ss_pred             --CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCH--HHHHH-cCCHHHHHHHHHhc-cHhHHHHHHHHHHHHhCCc
Confidence              568899999999988 88999999999999987653  33444 78999999999886 6678899999999999999


Q ss_pred             chHHHHHhcCcHHHHHHHhcc
Q 036338          266 RAKTKLINHKLITELGKLITD  286 (408)
Q Consensus       266 ~n~~~~~~~G~i~~Lv~lL~~  286 (408)
                      ..|..+...--+..++.-+.+
T Consensus       179 ~tR~yl~~~~dL~~l~apftd  199 (371)
T PF14664_consen  179 RTRKYLRPGFDLESLLAPFTD  199 (371)
T ss_pred             chhhhhcCCccHHHHHHhhhh
Confidence            988877765556666666654

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.34  E-value=0.00039  Score=45.20  Aligned_cols=40  Identities=23%  Similarity=0.339  Sum_probs=34.9

Q ss_pred             cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338          222 ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS  263 (408)
Q Consensus       222 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~  263 (408)
                      ++++..+.+ .|++++|+++|+++ +.++++.|+++|+||+.
T Consensus         2 ~~~~~~i~~-~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVD-AGGLPALVELLKSE-DEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHH-CCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence            346777777 89999999999976 89999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.33  E-value=0.022  Score=58.92  Aligned_cols=235  Identities=19%  Similarity=0.226  Sum_probs=144.6

Q ss_pred             HHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHH
Q 036338          103 KDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLM  181 (408)
Q Consensus       103 ~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~  181 (408)
                      ..+++.+.+.+.. |.-+--.+..+...+++....      ++..+.+=|.+++ ...+..|+.+|.++..    .+   
T Consensus        45 ~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l------~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~----~~---  110 (526)
T PF01602_consen   45 MEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL------IINSLQKDLNSPN-PYIRGLALRTLSNIRT----PE---  110 (526)
T ss_dssp             HHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH------HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S----HH---
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH------HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc----cc---
Confidence            3455556655555 444444555555555542222      2444566666655 3344889999999864    22   


Q ss_pred             HHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 036338          182 NLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI  261 (408)
Q Consensus       182 ~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L  261 (408)
                       .+    .-.++.+.++|.++ ++.+|..|+.++..+......   ..... .++.|.++|.+. ++.++.+|+.++..+
T Consensus       111 -~~----~~l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~-~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  111 -MA----EPLIPDVIKLLSDP-SPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDK-DPSVVSAALSLLSEI  179 (526)
T ss_dssp             -HH----HHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHS-SHHHHHHHHHHHHHH
T ss_pred             -hh----hHHHHHHHHHhcCC-chHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCC-cchhHHHHHHHHHHH
Confidence             11    23478889999998 999999999999999765322   22213 689999999886 899999999999999


Q ss_pred             ccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHHHHHhhcCch
Q 036338          262 SSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQGRMEICQDAALL  340 (408)
Q Consensus       262 s~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~g~i  340 (408)
                       ...+....-.-...+..|..++..                     .++..+..++.+|..++.. +.....    ...+
T Consensus       180 -~~~~~~~~~~~~~~~~~L~~~l~~---------------------~~~~~q~~il~~l~~~~~~~~~~~~~----~~~i  233 (526)
T PF01602_consen  180 -KCNDDSYKSLIPKLIRILCQLLSD---------------------PDPWLQIKILRLLRRYAPMEPEDADK----NRII  233 (526)
T ss_dssp             -HCTHHHHTTHHHHHHHHHHHHHTC---------------------CSHHHHHHHHHHHTTSTSSSHHHHHH----HHHH
T ss_pred             -ccCcchhhhhHHHHHHHhhhcccc---------------------cchHHHHHHHHHHHhcccCChhhhhH----HHHH
Confidence             211111011112234455555543                     4889999999999999874 333311    1233


Q ss_pred             HHHHHHHHH-------HHHHHH--------HhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          341 NGVVQKMLK-------TAQEAV--------SSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       341 ~~lv~~l~~-------~~~~~~--------~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      +.+..+|..       ++...+        .-..++..|..+|. +..+..|-.+-..|..+..
T Consensus       234 ~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~  296 (526)
T PF01602_consen  234 EPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQ  296 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh-cccchhehhHHHHHHHhhc
Confidence            334443322       222222        22456788888887 5567688888777776665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.068  Score=52.69  Aligned_cols=221  Identities=11%  Similarity=0.185  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhC---------hhhhhhhhhcCChHHHHHHHhhcCc-----chhhHHHH
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKES---------DENKTFLAKFDGLVVMLVEILSNVN-----DVNMLKQV  163 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~---------~~~r~~i~~~~G~i~~Lv~lL~s~~-----~~~~~e~A  163 (408)
                      -+.++.|+++|...+.+ ....+.-|..+...+         +..-..+++. ++++.|+.-+..-+     +....+.+
T Consensus       124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg-~vlaLLvqnveRLdEsvkeea~gv~~~  202 (536)
T KOG2734|consen  124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDG-QVLALLVQNVERLDESVKEEADGVHNT  202 (536)
T ss_pred             hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhc-cHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence            46678899999988888 777777788776432         1346678888 99999999987644     22345778


Q ss_pred             HHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcC-CChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHh
Q 036338          164 IRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQ-ESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKS  241 (408)
Q Consensus       164 ~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~-~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~l  241 (408)
                      ++++-|+..  .++.- -..++  +.|.+..|+..+... +-..-+.+|..+|.-+-.+. +++..++. -.+|..|++-
T Consensus       203 L~vveNlv~--~r~~~-~~~~~--e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~-l~GiD~lL~~  276 (536)
T KOG2734|consen  203 LAVVENLVE--VRPAI-CTEIV--EQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP-LDGIDVLLRQ  276 (536)
T ss_pred             HHHHHHHHh--ccHHH-HHHHH--HhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC-cccHHHHHhh
Confidence            888888875  44442 34444  668888877765532 13456788888888776665 48888887 6778888887


Q ss_pred             cc-----cCC---CHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchH
Q 036338          242 LS-----LDS---DRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLIT  313 (408)
Q Consensus       242 L~-----~~~---~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
                      +.     ++.   ..+..++--..|..+-..+.||..++...++....-+++.                      .....
T Consensus       277 la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~----------------------Kk~sr  334 (536)
T KOG2734|consen  277 LAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE----------------------KKVSR  334 (536)
T ss_pred             cchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH----------------------HHHhh
Confidence            74     221   2355666666777777788999999998888888877774                      44666


Q ss_pred             HHHHHHHHHHhCCH---HHHHHHHhhcCchHHHHHHHHH
Q 036338          314 EKALRLVEILSTTK---QGRMEICQDAALLNGVVQKMLK  349 (408)
Q Consensus       314 ~~a~~~L~~L~~~~---~~~~~~~~~~g~i~~lv~~l~~  349 (408)
                      ..|+.+|-.+...+   .+...+++ .+|...+....++
T Consensus       335 ~SalkvLd~am~g~~gt~~C~kfVe-~lGLrtiF~~FMk  372 (536)
T KOG2734|consen  335 GSALKVLDHAMFGPEGTPNCNKFVE-ILGLRTIFPLFMK  372 (536)
T ss_pred             hhHHHHHHHHHhCCCchHHHHHHHH-HHhHHHHHHHHhh
Confidence            78888888877543   57788887 4778777776664

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.00017  Score=68.47  Aligned_cols=47  Identities=28%  Similarity=0.496  Sum_probs=39.8

Q ss_pred             CCcccccCccccCCC-------------ceecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338           11 PSFFRCPISLDVMKS-------------PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVL   58 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~d-------------Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l   58 (408)
                      ..+-+|-||.+-|-+             |--++|||.|--+|+..|.++ ..+||.||.++
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~  344 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV  344 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence            356789999999654             367899999999999999996 55799999884

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=97.24  E-value=0.0001  Score=71.09  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=31.6

Q ss_pred             CCcccccCccccCCCceecCCCCcccHhhHHHHHh
Q 036338           11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLD   45 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~   45 (408)
                      .+++.||||...|+||++++|||+.|+.|-..-..
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV   36 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence            57899999999999999999999999999876543

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.20  E-value=0.00075  Score=43.80  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=35.2

Q ss_pred             cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          265 KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       265 ~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      ++++..+++.|++++|+.+|.+.                     +..++..|+++|.||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~---------------------~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSE---------------------DEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCC---------------------CHHHHHHHHHHHHHHcC
Confidence            34788889999999999999853                     88999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.14  E-value=0.034  Score=59.98  Aligned_cols=138  Identities=15%  Similarity=0.189  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHhhhChhhhhhh----hhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccH
Q 036338          117 SENLTKIVAFAKESDENKTFL----AKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCL  192 (408)
Q Consensus       117 ~~Al~~L~~la~~~~~~r~~i----~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i  192 (408)
                      .-++.+|+++.+.++.....+    .-. |-.+.+..+|....+.+++..|+.++..+..   ..++ -.-++  ..|.+
T Consensus      1743 ~m~LtAL~Nli~~nPdlasvfgSe~~li-g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta---n~~C-v~~~a--~~~vL 1815 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLI-GNFPLLITYLRCRKHPKLQILALQVILLATA---NKEC-VTDLA--TCNVL 1815 (2235)
T ss_pred             HHHHHHHHHHHhhCcchhhhccchhhhh-cccHHHHHHHHHcCCchHHHHHHHHHHHHhc---ccHH-HHHHH--hhhHH
Confidence            348889999998888443222    223 6788888888876655666888888876654   3444 34455  78899


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccC
Q 036338          193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSS  264 (408)
Q Consensus       193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~  264 (408)
                      ..|+.+|.+.  +..|+.+..+|+.|+++.+-.+.... .|++..+.+++-..++++.+.+|+..|..|...
T Consensus      1816 ~~LL~lLHS~--PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1816 TTLLTLLHSQ--PSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred             HHHHHHHhcC--hHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence            9999999874  78999999999999999886555556 688888888887666889999999999998653

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.00027  Score=65.38  Aligned_cols=46  Identities=17%  Similarity=0.409  Sum_probs=37.5

Q ss_pred             cccCccccCCC---ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           15 RCPISLDVMKS---PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        15 ~Cpi~~~~~~d---Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      -|.||..-|..   =+++||.|.|-+.||++|+..-...||+|+.++++
T Consensus       325 eCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         325 ECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             eEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            49999876642   34679999999999999998656679999987654

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.00032  Score=65.77  Aligned_cols=53  Identities=21%  Similarity=0.327  Sum_probs=44.2

Q ss_pred             cCCCCCCcccccCccccCCCceecC-CCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338            6 LYITVPSFFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      .....|+.-.||+|.+--.+|-++. +|+.||..||..+.. +...||+|+.+..
T Consensus       293 ~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~  346 (357)
T KOG0826|consen  293 SELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS  346 (357)
T ss_pred             cccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence            3344567778999999999998876 799999999999998 5678999998753

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.09  E-value=0.00031  Score=63.16  Aligned_cols=36  Identities=25%  Similarity=0.511  Sum_probs=32.5

Q ss_pred             CCCcccccCccccCCCceecCCCCcccHhhHHHHHh
Q 036338           10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLD   45 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~   45 (408)
                      +.+.-+|.+|++.++|||+.+.||.|||+||.+++-
T Consensus        40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il   75 (303)
T KOG3039|consen   40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL   75 (303)
T ss_pred             cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence            445568999999999999999999999999999875

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.04  E-value=0.0013  Score=45.97  Aligned_cols=55  Identities=18%  Similarity=0.070  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 036338          205 VDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI  261 (408)
Q Consensus       205 ~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L  261 (408)
                      +.+|..|+++|.+++........-.. ..+++.|+.+|+++ ++.++.+|++||.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            36789999999998866543333333 56899999999987 779999999999875

...

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.03  E-value=0.024  Score=51.74  Aligned_cols=149  Identities=17%  Similarity=0.227  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc----chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccH
Q 036338          117 SENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN----DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCL  192 (408)
Q Consensus       117 ~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~----~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i  192 (408)
                      ..|+.-|.-++. +++.|..+.++ ..=-.|-.+|...+    .+-..-.++++++.|..  .++..+...+.  ..++|
T Consensus        97 cnaL~LlQcvAS-HpdTr~~FL~A-~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk--~dd~eVi~fLl--~TeIV  170 (293)
T KOG3036|consen   97 CNALALLQCVAS-HPDTRRAFLRA-HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVK--NDDQEVIRFLL--TTEIV  170 (293)
T ss_pred             HHHHHHHHHHhc-CcchHHHHHHc-cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHh--cCcHHHHHHHH--HhhhH
Confidence            345555555555 58888888877 65555666665443    23334678899999887  44444455565  88999


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcCh-------HHHHHHhcccCCCHHHHHHHHHHHHHhccCc
Q 036338          193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGL-------LAETVKSLSLDSDRRLIEASLSCLITISSSK  265 (408)
Q Consensus       193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~-------i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~  265 (408)
                      |..++.+.+| +..+|.-|+.++..+-.++.+-.-|.....=       +..+|.-|.+..++++.+.+.++..+|+.++
T Consensus       171 PlCLrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  171 PLCLRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            9999999999 9999999999999988887665555432222       2233332323338899999999999999999


Q ss_pred             chHHHHH
Q 036338          266 RAKTKLI  272 (408)
Q Consensus       266 ~n~~~~~  272 (408)
                      ..|..+.
T Consensus       250 rar~aL~  256 (293)
T KOG3036|consen  250 RARAALR  256 (293)
T ss_pred             HHHHHHH
Confidence            8777665

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.0058  Score=57.44  Aligned_cols=115  Identities=19%  Similarity=0.210  Sum_probs=91.5

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 036338          193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLI  272 (408)
Q Consensus       193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~  272 (408)
                      .-++.+|.+. ++.+|..|...|..++.. ..+.....+.-.++.|.+++... .+  .+.|+.||.|++....-|..+.
T Consensus         6 ~elv~ll~~~-sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~l~~~ll   80 (353)
T KOG2973|consen    6 VELVELLHSL-SPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEELRKKLL   80 (353)
T ss_pred             HHHHHHhccC-ChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHHHHHHHH
Confidence            4578889998 999999999888888766 34443333456788899999875 44  7889999999999999999999


Q ss_pred             hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHH
Q 036338          273 NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEIC  334 (408)
Q Consensus       273 ~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~  334 (408)
                      .. .+..++..+.++                     ...+.+.++.+|.||++.++....+.
T Consensus        81 ~~-~~k~l~~~~~~p---------------------~~~lad~~cmlL~NLs~~~~~~~~ll  120 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDP---------------------QSPLADLICMLLSNLSRDDDEVAALL  120 (353)
T ss_pred             HH-HHHHHHHHhcCc---------------------ccchHHHHHHHHHHhccCchHHHHHH
Confidence            87 777777777654                     56888999999999999777666554

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=96.96  E-value=0.013  Score=57.86  Aligned_cols=174  Identities=12%  Similarity=0.134  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHhcCChh---HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338          100 DEVKDIIRVAISKNED---FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus       100 ~~i~~Lv~~L~s~~~~---~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      +.+..|++++++++.+   +.++.+.|..+..  .+|++.++.. | ...++.+-+....++.....+.+|.++.+  +.
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~-~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK--HS  253 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARI-G-LGVILNLAKEREPVELARSVAGILEHMFK--HS  253 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhc-c-chhhhhhhhhcCcHHHHHHHHHHHHHHhh--hh
Confidence            3455788999988765   7788888888764  4788888887 6 55566665544433444788899999988  77


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc--chhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA--DSKVKIAERDGLLAETVKSLSLDSDRRLIEAS  254 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A  254 (408)
                      ++..+.++   ..|++..++-..+.. ++....+++.+|.|++...  +.+..|.+ ..+-+-|.-+-.+. |.-.+-.|
T Consensus       254 eet~~~Lv---aa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~sk-Del~R~~A  327 (832)
T KOG3678|consen  254 EETCQRLV---AAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSK-DELLRLHA  327 (832)
T ss_pred             HHHHHHHH---hhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcch-HHHHHHHH
Confidence            66556666   789999888777777 8999999999999998764  56777776 45555566655554 77788899


Q ss_pred             HHHHHHhccCcchHHHHHhcC---cHHHHHHHhc
Q 036338          255 LSCLITISSSKRAKTKLINHK---LITELGKLIT  285 (408)
Q Consensus       255 ~~aL~~Ls~~~~n~~~~~~~G---~i~~Lv~lL~  285 (408)
                      +-|..-|+++.+.-......|   .|.+|+..+.
T Consensus       328 ClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~D  361 (832)
T KOG3678|consen  328 CLAVAVLATNKEVEREVRKSGTLALVEPLVASLD  361 (832)
T ss_pred             HHHHhhhhhhhhhhHHHhhccchhhhhhhhhccC
Confidence            999999999887655555554   4567777665

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.95  E-value=0.0096  Score=54.64  Aligned_cols=175  Identities=18%  Similarity=0.162  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHhhhC--hhhhhhhhh-cCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccH
Q 036338          116 FSENLTKIVAFAKES--DENKTFLAK-FDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCL  192 (408)
Q Consensus       116 ~~~Al~~L~~la~~~--~~~r~~i~~-~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i  192 (408)
                      |.+|+..|+.+..++  ......+.+ ....+..+...+.+.. ..+...|+.++..|+.  .-...+...+    ...+
T Consensus        24 r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~--~l~~~~~~~~----~~~l   96 (228)
T PF12348_consen   24 RVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLAR--QLGSHFEPYA----DILL   96 (228)
T ss_dssp             HHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHH--HHGGGGHHHH----HHHH
T ss_pred             HHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHH--HHhHhHHHHH----HHHH
Confidence            899999999999876  223333222 1122334444444322 3355778888777765  2212122222    3568


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcCh-HHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hHHH
Q 036338          193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGL-LAETVKSLSLDSDRRLIEASLSCLITISSSKR-AKTK  270 (408)
Q Consensus       193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~  270 (408)
                      |.|++.+.++ +.-++..|..+|..+...-...      ..+ ++.+...+.+. ++.++..++..|..+..... +...
T Consensus        97 ~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   97 PPLLKKLGDS-KKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhh
Confidence            9999999888 8899999999999998764411      122 45566667775 99999999999998866433 1222


Q ss_pred             HHh----cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338          271 LIN----HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT  326 (408)
Q Consensus       271 ~~~----~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~  326 (408)
                      +-.    ...++.+...+.++                     ++.+++.|-.++..+...
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~---------------------~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDA---------------------DPEVREAARECLWALYSH  207 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS----------------------HHHHHHHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHHCCCC---------------------CHHHHHHHHHHHHHHHHH
Confidence            212    34667778888754                     899999999999999654

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=96.95  E-value=0.048  Score=53.95  Aligned_cols=229  Identities=17%  Similarity=0.150  Sum_probs=152.5

Q ss_pred             HHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhc
Q 036338          122 KIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQ  201 (408)
Q Consensus       122 ~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~  201 (408)
                      .|..+.+.++..|..+.-. -..+.+..++-+++ .++...+..++..+..   +...++.+.   +.+.=-.++.-|..
T Consensus         6 ~Lv~l~~~~p~l~~~~~~~-~~~~~i~~~lL~~~-~~vraa~yRilRy~i~---d~~~l~~~~---~l~id~~ii~SL~~   77 (371)
T PF14664_consen    6 DLVDLLKRHPTLKYDLVLS-FFGERIQCMLLSDS-KEVRAAGYRILRYLIS---DEESLQILL---KLHIDIFIIRSLDR   77 (371)
T ss_pred             HHHHHHHhCchhhhhhhHH-HHHHHHHHHHCCCc-HHHHHHHHHHHHHHHc---CHHHHHHHH---HcCCchhhHhhhcc
Confidence            4445555666666665544 45555655554444 3344778888888875   444434433   55555556666654


Q ss_pred             C-CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHH
Q 036338          202 Q-ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITEL  280 (408)
Q Consensus       202 ~-~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~L  280 (408)
                      . .+...|+.|.+.+..+...+.+...+  ..|++..+|.+..+. +...+..++.+|..|+..+  -..++++||+..|
T Consensus        78 ~~~~~~ER~QALkliR~~l~~~~~~~~~--~~~vvralvaiae~~-~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L  152 (371)
T PF14664_consen   78 DNKNDVEREQALKLIRAFLEIKKGPKEI--PRGVVRALVAIAEHE-DDRLRRICLETLCELALLN--PELVAECGGIRVL  152 (371)
T ss_pred             cCCChHHHHHHHHHHHHHHHhcCCcccC--CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHH
Confidence            3 25678899999999888765554444  268999999999986 7789999999999999853  3456699999999


Q ss_pred             HHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH-----------
Q 036338          281 GKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK-----------  349 (408)
Q Consensus       281 v~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~-----------  349 (408)
                      ++.+.++                     ...+.+..+.++-.+-.+|..|..+... --+..++.-+..           
T Consensus       153 ~~~l~d~---------------------~~~~~~~l~~~lL~lLd~p~tR~yl~~~-~dL~~l~apftd~~~~~~~~~~~  210 (371)
T PF14664_consen  153 LRALIDG---------------------SFSISESLLDTLLYLLDSPRTRKYLRPG-FDLESLLAPFTDFHYRKIKDDRE  210 (371)
T ss_pred             HHHHHhc---------------------cHhHHHHHHHHHHHHhCCcchhhhhcCC-ccHHHHHHhhhhhhccccccchH
Confidence            9999753                     3348889999999999999998866542 223333332222           


Q ss_pred             -----HHHHHH---H------------hcCcHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 036338          350 -----TAQEAV---S------------SSNVLTKILLLMQSNCTPAVRQMSADLLKI  386 (408)
Q Consensus       350 -----~~~~~~---~------------~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~  386 (408)
                           ..+..+   .            +..++..|+..|+... +..|+..-+++--
T Consensus       211 ~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~-~~ir~~Ildll~d  266 (371)
T PF14664_consen  211 LERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN-PEIRKAILDLLFD  266 (371)
T ss_pred             HHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence                 111111   1            1367888888887654 5577777665553

>TIGR02270 conserved hypothetical protein

Probab=96.83  E-value=0.51  Score=47.35  Aligned_cols=88  Identities=14%  Similarity=0.062  Sum_probs=47.0

Q ss_pred             HHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc
Q 036338          144 VVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA  222 (408)
Q Consensus       144 i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~  222 (408)
                      +..|+..|.+.+ .++  ..++.+|..+-                ..+..+.|+.+|.+. +..+|..++.++..     
T Consensus        88 ~~~L~~~L~d~~~~vr--~aaa~ALg~i~----------------~~~a~~~L~~~L~~~-~p~vR~aal~al~~-----  143 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLC--AGIQAALGWLG----------------GRQAEPWLEPLLAAS-EPPGRAIGLAALGA-----  143 (410)
T ss_pred             HHHHHHHhcCCCHHHH--HHHHHHHhcCC----------------chHHHHHHHHHhcCC-ChHHHHHHHHHHHh-----
Confidence            566677776554 232  55555554321                223345556666655 66666555544443     


Q ss_pred             chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338          223 DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS  263 (408)
Q Consensus       223 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~  263 (408)
                           ..  ....++|..+|++. ++.++..|+++|..+..
T Consensus       144 -----r~--~~~~~~L~~~L~d~-d~~Vra~A~raLG~l~~  176 (410)
T TIGR02270       144 -----HR--HDPGPALEAALTHE-DALVRAAALRALGELPR  176 (410)
T ss_pred             -----hc--cChHHHHHHHhcCC-CHHHHHHHHHHHHhhcc
Confidence                 11  22345666666654 66666666666666543

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=96.77  E-value=0.0012  Score=60.17  Aligned_cols=63  Identities=30%  Similarity=0.342  Sum_probs=45.5

Q ss_pred             cccccCccccCCCceec-CCCCcccHhhHHHHHhcC-CCCCCCcccc----cCCCCCcccHHHHHHHHH
Q 036338           13 FFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSG-NNTCPATMQV----LQSKEFVPNRTLQRLIQI   75 (408)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~-~~~CP~~~~~----l~~~~l~~n~~l~~~I~~   75 (408)
                      +++|||+.....+||+. .|||.|+|..|..++... ...||+-+..    +.+..+.+...+++.|.+
T Consensus       176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~  244 (262)
T KOG2979|consen  176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQ  244 (262)
T ss_pred             cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHH
Confidence            47899999999999987 599999999999998742 3569996654    222334444445444443

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.00092  Score=64.55  Aligned_cols=43  Identities=23%  Similarity=0.522  Sum_probs=39.2

Q ss_pred             cccccCccccCCC---ceecCCCCcccHhhHHHHHhcCC--CCCCCcc
Q 036338           13 FFRCPISLDVMKS---PVSLCTGVTYDRASIQRWLDSGN--NTCPATM   55 (408)
Q Consensus        13 ~~~Cpi~~~~~~d---Pv~~~cgh~f~r~cI~~~~~~~~--~~CP~~~   55 (408)
                      -|.|||.++--.|   |+.+.|||..++.+|.+...+|.  +.||.|-
T Consensus       334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP  381 (394)
T KOG2817|consen  334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP  381 (394)
T ss_pred             eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence            3799999999888   99999999999999999999887  7899994

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.00081  Score=64.82  Aligned_cols=60  Identities=25%  Similarity=0.458  Sum_probs=45.7

Q ss_pred             cccccCccccCCCce-----ecCCCCcccHhhHHHHHhcC-CCCCCCcccccCCCCCcccHHHHHH
Q 036338           13 FFRCPISLDVMKSPV-----SLCTGVTYDRASIQRWLDSG-NNTCPATMQVLQSKEFVPNRTLQRL   72 (408)
Q Consensus        13 ~~~Cpi~~~~~~dPv-----~~~cgh~f~r~cI~~~~~~~-~~~CP~~~~~l~~~~l~~n~~l~~~   72 (408)
                      -.+||||.+-+.-|+     ++.|||-|-..||++|+... .-.||.|.-.-...++++-..+|..
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q   69 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ   69 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence            358999999988875     56799999999999999532 2469999766555667776666553

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.66  E-value=0.057  Score=50.07  Aligned_cols=150  Identities=17%  Similarity=0.247  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-c---hhhHHHHHHHHHHhcccccchHHHHHHHhccCcccH
Q 036338          117 SENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-D---VNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCL  192 (408)
Q Consensus       117 ~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~---~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i  192 (408)
                      ..|+.-+..+|. +++.|..+.++ ...-.|..+|...+ .   +...-..+++++.|.+  .|+...-..+.  +..++
T Consensus        68 cnaLaLlQ~vAs-hpetr~~Fl~a-~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK--~d~~evi~fLl--~tEii  141 (262)
T PF04078_consen   68 CNALALLQCVAS-HPETRMPFLKA-HIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVK--TDDPEVISFLL--QTEII  141 (262)
T ss_dssp             HHHHHHHHHHHH--TTTHHHHHHT-TGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHT--T--HHHHHHHH--CTTHH
T ss_pred             HHHHHHHHHHHc-ChHHHHHHHHc-CchhhehhhhhccccccccchhhHhHHHHHHHHHc--CCcHHHHHHHH--hhchH
Confidence            356666666666 68999999999 88888888887655 1   2233567888888887  44444456666  88999


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcC-------hHHHHHHhcccCCCHHHHHHHHHHHHHhccCc
Q 036338          193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDG-------LLAETVKSLSLDSDRRLIEASLSCLITISSSK  265 (408)
Q Consensus       193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g-------~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~  265 (408)
                      |..++.+..| +.-.|.-|..++..+-.++.+-..+..+..       ++..+|.-+....+++..+...++-..|+.++
T Consensus       142 plcLr~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  142 PLCLRIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHHHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HHHHHHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            9999999999 999999999999999877766555543333       33333333333338999999999999999999


Q ss_pred             chHHHHHh
Q 036338          266 RAKTKLIN  273 (408)
Q Consensus       266 ~n~~~~~~  273 (408)
                      ..|..+..
T Consensus       221 rar~aL~~  228 (262)
T PF04078_consen  221 RAREALRQ  228 (262)
T ss_dssp             THHHHHHH
T ss_pred             HHHHHHHH
Confidence            98887664

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.0013  Score=60.06  Aligned_cols=50  Identities=22%  Similarity=0.377  Sum_probs=41.0

Q ss_pred             CcccccCccccCCCce----------ecCCCCcccHhhHHHHHhcC-CCCCCCcccccCCC
Q 036338           12 SFFRCPISLDVMKSPV----------SLCTGVTYDRASIQRWLDSG-NNTCPATMQVLQSK   61 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dPv----------~~~cgh~f~r~cI~~~~~~~-~~~CP~~~~~l~~~   61 (408)
                      ++-.|.+|++-+-+.|          .++|+|.|-.-||.-|.--| ..+||.|++.+...
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK  283 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence            4568999999887766          78999999999999997655 57899998875443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.59  E-value=0.32  Score=52.84  Aligned_cols=237  Identities=15%  Similarity=0.154  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHH-H-hcccccchHHHHHHHhccCcccH
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLD-L-ILNKIEDQQHLMNLILKRDQDCL  192 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~-~-L~~~~~~~~~~~~~i~~~~~g~i  192 (408)
                      |.+|+.-|..+..-.+=....-... |+.|-+++||+++. +.+   ..+..+. . |+.   |..+ +.-++  +.++-
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsV-GIFPYVLKLLQS~a~ELr---piLVFIWAKILAv---D~SC-Q~dLv--Ke~g~  556 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSV-GIFPYVLKLLQSSARELR---PILVFIWAKILAV---DPSC-QADLV--KENGY  556 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhcc-chHHHHHHHhccchHhhh---hhHHHHHHHHHhc---Cchh-HHHHH--hccCc
Confidence            6778888777765434333444556 99999999999987 333   2222221 1 333   4332 44343  45555


Q ss_pred             HHHHHHHhc-C-CChHHHHHHHHHHHHhhcCcc-hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc-CcchH
Q 036338          193 NSLLLVLKQ-Q-ESVDSRIESLRLLEFIAGDAD-SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS-SKRAK  268 (408)
Q Consensus       193 ~~Lv~lL~~-~-~~~~~~~~Aa~~L~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~-~~~n~  268 (408)
                      ..++..|.. + -+.|.|.-||.+|..+..+.. ..+...+ .+.|..=...|.++..+-.+...+-+|..|=. .+++|
T Consensus       557 ~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Ar  635 (1387)
T KOG1517|consen  557 KYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEAR  635 (1387)
T ss_pred             eeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhh
Confidence            555556654 2 145888899999999987743 5555555 67777777777774357788888888888865 45677


Q ss_pred             HHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCH----HHHHHHHhhcCchHHHH
Q 036338          269 TKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTK----QGRMEICQDAALLNGVV  344 (408)
Q Consensus       269 ~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~----~~~~~~~~~~g~i~~lv  344 (408)
                      ..=++.++...|+.+|+++                     -++++..|+-+|..+.+..    +.+...+++      .+
T Consensus       636 w~G~r~~AhekL~~~LsD~---------------------vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~------~~  688 (1387)
T KOG1517|consen  636 WSGRRDNAHEKLILLLSDP---------------------VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEE------EI  688 (1387)
T ss_pred             hccccccHHHHHHHHhcCc---------------------cHHHHHHHHHHHHHHhcccccccchhhhhhhh------hh
Confidence            7777999999999999864                     7899999999999997731    222222211      12


Q ss_pred             HH-HHHHHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhhcCc
Q 036338          345 QK-MLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYK  392 (408)
Q Consensus       345 ~~-l~~~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~  392 (408)
                      .+ ..+...+.++..|- ..++.++ +.+++-+|......|..+...|+
T Consensus       689 ~l~~~~~~~E~~i~~~~-~~ll~~v-sdgsplvr~ev~v~ls~~~~g~~  735 (1387)
T KOG1517|consen  689 DLDDERTSIEDLIIKGL-MSLLALV-SDGSPLVRTEVVVALSHFVVGYV  735 (1387)
T ss_pred             cchhhhhhHHHHHHhhH-HHHHHHH-hccchHHHHHHHHHHHHHHHhhH
Confidence            10 01123444444443 3444444 45567677666666666555443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.57  E-value=0.0051  Score=42.93  Aligned_cols=55  Identities=16%  Similarity=0.068  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q 036338          248 RRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEIL  323 (408)
Q Consensus       248 ~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L  323 (408)
                      +.+++.|+++|.+++........-....+++.|+.+|.++                     +..++..|+.+|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~---------------------~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD---------------------DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS---------------------SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC---------------------CHHHHHHHHHHHhcC
Confidence            4689999999999988776666666778999999999864                     669999999999875

...

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.0018  Score=58.55  Aligned_cols=52  Identities=15%  Similarity=0.347  Sum_probs=42.5

Q ss_pred             CCcccccCccccCCCce----ecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc
Q 036338           11 PSFFRCPISLDVMKSPV----SLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP   65 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv----~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~   65 (408)
                      ...|+|||++-.|.+-.    +-+|||.|..+.+.+.-.   ..|++|++.++.++.++
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika---s~C~~C~a~y~~~dvIv  164 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA---SVCHVCGAAYQEDDVIV  164 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHhhh---ccccccCCcccccCeEe
Confidence            35699999999999954    458999999999887753   47999999998877543

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.043  Score=59.24  Aligned_cols=140  Identities=12%  Similarity=0.152  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHhcccccchHHHHHHHhcc--CcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHH
Q 036338          160 LKQVIRVLDLILNKIEDQQHLMNLILKR--DQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAE  237 (408)
Q Consensus       160 ~e~A~~~L~~L~~~~~~~~~~~~~i~~~--~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~  237 (408)
                      ++-++.+|.|+..  ...+ +..++..+  --|-.+.+..+|+...+..++.-|..++..+..+.+.-..++. .|.+..
T Consensus      1742 v~m~LtAL~Nli~--~nPd-lasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~-~~vL~~ 1817 (2235)
T KOG1789|consen 1742 VLMTLTALANLVS--ANPD-LASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLAT-CNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHh--hCcc-hhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHh-hhHHHH
Confidence            4668889999875  2221 11111100  1377888888888643778999999999999999998888887 789999


Q ss_pred             HHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Q 036338          238 TVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKAL  317 (408)
Q Consensus       238 Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  317 (408)
                      |+.+|.+  -|..++-++..||.|+++++-.+...+.|++..+.+++-.                    ..++..+..|+
T Consensus      1818 LL~lLHS--~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~--------------------~~~~QqRAqaA 1875 (2235)
T KOG1789|consen 1818 LLTLLHS--QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCL--------------------TNSDQQRAQAA 1875 (2235)
T ss_pred             HHHHHhc--ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhc--------------------cCcHHHHHHHH
Confidence            9999987  4789999999999999999999999999999999988854                    23566677777


Q ss_pred             HHHHHHhC
Q 036338          318 RLVEILST  325 (408)
Q Consensus       318 ~~L~~L~~  325 (408)
                      ..|..|..
T Consensus      1876 eLlaKl~A 1883 (2235)
T KOG1789|consen 1876 ELLAKLQA 1883 (2235)
T ss_pred             HHHHHhhh
Confidence            77777643

>PTZ00429 beta-adaptin; Provisional

Probab=96.44  E-value=1.4  Score=47.62  Aligned_cols=179  Identities=12%  Similarity=0.110  Sum_probs=110.7

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH  179 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~  179 (408)
                      .+..+.+.+.+.++. |.-|++.|..+-.  +.    +.+  -.++.+.+.|.+.+ +-+...|+.++..+-.  .+.  
T Consensus       106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~----i~e--~l~~~lkk~L~D~~-pYVRKtAalai~Kly~--~~p--  172 (746)
T PTZ00429        106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SS----VLE--YTLEPLRRAVADPD-PYVRKTAAMGLGKLFH--DDM--  172 (746)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HH----HHH--HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHh--hCc--
Confidence            456667777777766 7777777765532  12    222  13444566665544 3344888888888754  232  


Q ss_pred             HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338          180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI  259 (408)
Q Consensus       180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~  259 (408)
                        ..+.  +.|.++.|.++|... +..+..+|..+|..+.........+.  .+.+..|+..|.+- ++-.+-..+.+|.
T Consensus       173 --elv~--~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~~~~~~~l~l~--~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~  244 (746)
T PTZ00429        173 --QLFY--QQDFKKDLVELLNDN-NPVVASNAAAIVCEVNDYGSEKIESS--NEWVNRLVYHLPEC-NEWGQLYILELLA  244 (746)
T ss_pred             --cccc--ccchHHHHHHHhcCC-CccHHHHHHHHHHHHHHhCchhhHHH--HHHHHHHHHHhhcC-ChHHHHHHHHHHH
Confidence              2343  678899999999988 99999999999999976543332222  45567777777654 5555555566654


Q ss_pred             HhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          260 TISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       260 ~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      .....  +...  ....+..+...|++.                     ++.++-.|+.++.++..
T Consensus       245 ~y~P~--~~~e--~~~il~~l~~~Lq~~---------------------N~AVVl~Aik~il~l~~  285 (746)
T PTZ00429        245 AQRPS--DKES--AETLLTRVLPRMSHQ---------------------NPAVVMGAIKVVANLAS  285 (746)
T ss_pred             hcCCC--CcHH--HHHHHHHHHHHhcCC---------------------CHHHHHHHHHHHHHhcC
Confidence            43221  1111  124556666666643                     56777777777777764

>TIGR02270 conserved hypothetical protein

Probab=96.42  E-value=0.22  Score=49.92  Aligned_cols=90  Identities=16%  Similarity=0.082  Sum_probs=61.9

Q ss_pred             ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338          142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD  221 (408)
Q Consensus       142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~  221 (408)
                      .+++.|+..|....+..+...++.+|  ...   +           +..++..|+..|.+. +..++..++.+|..    
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al--~~~---~-----------~~~~~~~L~~~L~d~-~~~vr~aaa~ALg~----  112 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALAL--LAQ---E-----------DALDLRSVLAVLQAG-PEGLCAGIQAALGW----  112 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHH--hcc---C-----------ChHHHHHHHHHhcCC-CHHHHHHHHHHHhc----
Confidence            56888888886544233223232222  211   1           122378889999988 88899999999874    


Q ss_pred             cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHH
Q 036338          222 ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLIT  260 (408)
Q Consensus       222 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~  260 (408)
                            +.. .+..+.|+.+|++. ++.++..++.++..
T Consensus       113 ------i~~-~~a~~~L~~~L~~~-~p~vR~aal~al~~  143 (410)
T TIGR02270       113 ------LGG-RQAEPWLEPLLAAS-EPPGRAIGLAALGA  143 (410)
T ss_pred             ------CCc-hHHHHHHHHHhcCC-ChHHHHHHHHHHHh
Confidence                  333 56789999999887 88899888877765

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=96.41  E-value=0.26  Score=50.15  Aligned_cols=248  Identities=17%  Similarity=0.112  Sum_probs=142.0

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc----chhhHHHHHHHHHHhcccccchHHHHHHHhccCccc
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN----DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDC  191 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~----~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~  191 (408)
                      ..+|+++|.++.-.++..|..+.+. |..+.++..|+...    ......-...+|+.++.  ......+.++.  +.++
T Consensus        49 ~~EALKCL~N~lf~s~~aR~~~~~~-~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa--~~~~~~~~L~~--e~~~  123 (446)
T PF10165_consen   49 SREALKCLCNALFLSPSARQIFVDL-GLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTA--LRPDDRKKLIE--EHHG  123 (446)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHc-CcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc--CChhHHHHHHH--Hhhh
Confidence            7889999999999999999999999 99999999998862    12233556777776664  23333245554  6677


Q ss_pred             HHHHHHHHhc--------C--------CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccC--------CC
Q 036338          192 LNSLLLVLKQ--------Q--------ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLD--------SD  247 (408)
Q Consensus       192 i~~Lv~lL~~--------~--------~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~--------~~  247 (408)
                      +..++..|..        .        .+.+....+.++++|+......... -.....++.|+.+|..-        ..
T Consensus       124 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l  202 (446)
T PF10165_consen  124 VELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPL  202 (446)
T ss_pred             HHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence            8777776642        1        0223446678888899765443322 11134566666665421        12


Q ss_pred             HHHHHHHHHHHHHhccCcchH------------HHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHH
Q 036338          248 RRLIEASLSCLITISSSKRAK------------TKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEK  315 (408)
Q Consensus       248 ~~~~~~A~~aL~~Ls~~~~n~------------~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (408)
                      ......+..+|.|+-......            ..-.....+..|+++|..... ..            ....-.....-
T Consensus       203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~-~~------------~~~~l~~~l~P  269 (446)
T PF10165_consen  203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLD-KY------------EALKLDELLTP  269 (446)
T ss_pred             hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHH-hc------------CcccchhhHhh
Confidence            356777888888873211100            001123456666666653100 00            00001234444


Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHHHHHHHHH-hcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          316 ALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVS-SSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       316 a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~~~~~~~~-~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      .+.+|.+++.....-++..+. ..+|..-+     .....- ....-.+|+.+|.+.. +..|..++.+|..|.+
T Consensus       270 lL~lL~~~~~~~~~~Rk~lr~-~lLP~~~D-----r~~~~e~~~tL~~rLlrLmt~~~-~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  270 LLTLLTRLARAAREVRKYLRA-RLLPPDKD-----RKKPPEKGDTLRSRLLRLMTSPD-PQLKDAVAELLFVLCK  337 (446)
T ss_pred             HHHHHHHHHHhcHHHHHHHHH-HhCCChhh-----cccCCCCCcchHHHHHHHhCCCC-chHHHHHHHHHHHHHh
Confidence            555666665542222223232 34554422     122111 2344567777777665 7789999999988776

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.40  E-value=0.13  Score=44.27  Aligned_cols=129  Identities=16%  Similarity=0.192  Sum_probs=100.4

Q ss_pred             HHHHhccCcccHHHHHHHHhcCCC------hHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCC-CHHHHHH
Q 036338          181 MNLILKRDQDCLNSLLLVLKQQES------VDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDS-DRRLIEA  253 (408)
Q Consensus       181 ~~~i~~~~~g~i~~Lv~lL~~~~~------~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~~  253 (408)
                      .+.|   +.|++..|++++.+| +      .+....+..+..+|-.+.-.-+.... ..+|...+.++.... +..+.+.
T Consensus         5 ~EFI---~~~Gl~~L~~~iE~g-~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~   79 (160)
T PF11841_consen    5 QEFI---SRDGLTLLIKMIEEG-TEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQR   79 (160)
T ss_pred             HHHH---hccCHHHHHHHHHcC-CccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccccccchHHHH
Confidence            3456   678999999999998 5      36667777788887776655666665 678999999998543 6789999


Q ss_pred             HHHHHHHhccCcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC--CHHHH
Q 036338          254 SLSCLITISSSKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST--TKQGR  330 (408)
Q Consensus       254 A~~aL~~Ls~~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~--~~~~~  330 (408)
                      |+..|-++..+.......| +.=-++.|+.+|+..                     +..++.+|.+.+..|-.  +++.|
T Consensus        80 sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~---------------------~~~iq~naiaLinAL~~kA~~~~r  138 (160)
T PF11841_consen   80 SLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVS---------------------NQEIQTNAIALINALFLKADDSKR  138 (160)
T ss_pred             HHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC---------------------CHHHHHHHHHHHHHHHhcCChHHH
Confidence            9999999999888877777 466679999999864                     78999999999998864  35555


Q ss_pred             HHHHh
Q 036338          331 MEICQ  335 (408)
Q Consensus       331 ~~~~~  335 (408)
                      +.+.+
T Consensus       139 ~~i~~  143 (160)
T PF11841_consen  139 KEIAE  143 (160)
T ss_pred             HHHHH
Confidence            55544

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=96.39  E-value=0.0029  Score=46.76  Aligned_cols=44  Identities=30%  Similarity=0.556  Sum_probs=35.7

Q ss_pred             cccCccccCCC----ceec-CCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338           15 RCPISLDVMKS----PVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        15 ~Cpi~~~~~~d----Pv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      +||-|+--|..    ||+. .|.|.|--.||.+|++. ...||.+++++.
T Consensus        33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~   81 (88)
T COG5194          33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV   81 (88)
T ss_pred             cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence            58888776633    7776 59999999999999996 667999998754

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.19  E-value=0.084  Score=45.40  Aligned_cols=129  Identities=9%  Similarity=0.186  Sum_probs=93.6

Q ss_pred             cChHHHHHHhcccCCC-----HHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCC
Q 036338          232 DGLLAETVKSLSLDSD-----RRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSG  306 (408)
Q Consensus       232 ~g~i~~Lv~lL~~~~~-----~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~  306 (408)
                      .|++..|++++.++..     ......++.|+.+|-.++-........--|..++..+..+                   
T Consensus        10 ~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~-------------------   70 (160)
T PF11841_consen   10 RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSS-------------------   70 (160)
T ss_pred             ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccc-------------------
Confidence            6789999999998743     4778889999999998877666777777888888888753                   


Q ss_pred             CCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHH
Q 036338          307 NGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSA  381 (408)
Q Consensus       307 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~  381 (408)
                      ..+..+.+.|+++|+++..+....-..+..+=-++.|+.+|..  ...-++..++..+..++......+.|+.+.
T Consensus        71 ~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~--~~~~iq~naiaLinAL~~kA~~~~r~~i~~  143 (160)
T PF11841_consen   71 AMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQV--SNQEIQTNAIALINALFLKADDSKRKEIAE  143 (160)
T ss_pred             cccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHc--CCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            3378999999999999998766655555544667778876553  222345566677766666554444444443

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.19  E-value=0.0046  Score=42.43  Aligned_cols=45  Identities=22%  Similarity=0.363  Sum_probs=24.3

Q ss_pred             cccccCccccCCCceec-CCCCc--ccHhhHHHH-HhcCCCCCCCcccc
Q 036338           13 FFRCPISLDVMKSPVSL-CTGVT--YDRASIQRW-LDSGNNTCPATMQV   57 (408)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~-~cgh~--f~r~cI~~~-~~~~~~~CP~~~~~   57 (408)
                      .+.|||+...|+-||-. .|-|.  |+-...-+. ...+...||.|+++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            36899999999999976 59997  555433333 33355789999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.15  E-value=0.028  Score=44.67  Aligned_cols=66  Identities=12%  Similarity=0.029  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhccC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHH
Q 036338          251 IEASLSCLITISSS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQ  328 (408)
Q Consensus       251 ~~~A~~aL~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~  328 (408)
                      +..-++.|.||+.. +.+...+.+.|+||.++..-.-+                   +.+|-++|.|..++++|+. +++
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD-------------------~~nP~irEwai~aiRnL~e~n~e   63 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID-------------------DHNPFIREWAIFAIRNLCEGNPE   63 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC-------------------cccHHHHHHHHHHHHHHHhCCHH
Confidence            55678899999984 56888888999999999987543                   4579999999999999996 688


Q ss_pred             HHHHHHh
Q 036338          329 GRMEICQ  335 (408)
Q Consensus       329 ~~~~~~~  335 (408)
                      |++.+..
T Consensus        64 NQ~~I~~   70 (102)
T PF09759_consen   64 NQEFIAQ   70 (102)
T ss_pred             HHHHHHh
Confidence            8887765

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.07  E-value=0.0051  Score=59.01  Aligned_cols=63  Identities=22%  Similarity=0.279  Sum_probs=51.4

Q ss_pred             ccccCccccCCC------ceecCCCCcccHhhHHHHHhcCCCCCCCcccc--cCC---CCCcccHHHHHHHHHH
Q 036338           14 FRCPISLDVMKS------PVSLCTGVTYDRASIQRWLDSGNNTCPATMQV--LQS---KEFVPNRTLQRLIQIW   76 (408)
Q Consensus        14 ~~Cpi~~~~~~d------Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~--l~~---~~l~~n~~l~~~I~~~   76 (408)
                      +.|-||.+.|+.      |-++.|||+||..|+......+...||.||.+  +..   ..+..|+.+-..++..
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            469999998876      88899999999999998888777789999987  332   4467788887777765

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.99  E-value=0.0056  Score=41.26  Aligned_cols=43  Identities=16%  Similarity=0.321  Sum_probs=22.2

Q ss_pred             ccCccccCC--Cceec--CCCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338           16 CPISLDVMK--SPVSL--CTGVTYDRASIQRWLDSGNNTCPATMQVL   58 (408)
Q Consensus        16 Cpi~~~~~~--dPv~~--~cgh~f~r~cI~~~~~~~~~~CP~~~~~l   58 (408)
                      ||+|-+.|.  |--..  +||+.+|+.|..+-.+++...||-|++++
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789988882  22223  59999999998888776678899999875

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.98  E-value=1.6  Score=43.35  Aligned_cols=210  Identities=16%  Similarity=0.167  Sum_probs=137.6

Q ss_pred             HHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccc----cch--HHHHHHHhccCcc
Q 036338          118 ENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKI----EDQ--QHLMNLILKRDQD  190 (408)
Q Consensus       118 ~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~----~~~--~~~~~~i~~~~~g  190 (408)
                      ..++.+..+|. -|...-.+++. ++|+.|+.+|.... ++.  -..+..|-.|.-.+    +++  +.+-..++  +.+
T Consensus       103 d~IQ~mhvlAt-~PdLYp~lvel-n~V~slL~LLgHeNtDI~--iavvdLLqELTD~Dv~~es~egAevLidaLv--dg~  176 (536)
T KOG2734|consen  103 DIIQEMHVLAT-MPDLYPILVEL-NAVQSLLELLGHENTDIA--IAVVDLLQELTDEDVLYESEEGAEVLIDALV--DGQ  176 (536)
T ss_pred             HHHHHHHhhhc-ChHHHHHHHHh-ccHHHHHHHhcCCCchhH--HHHHHHHHHhhhhcccccccccHHHHHHHHH--hcc
Confidence            45666666665 47788889999 99999999998876 443  44555666654210    111  11223444  788


Q ss_pred             cHHHHHHHHhcCCChHHH------HHHHHHHHHhhcC-cchhhHHhhhcChHHHHHHhcccC-CCHHHHHHHHHHHHHhc
Q 036338          191 CLNSLLLVLKQQESVDSR------IESLRLLEFIAGD-ADSKVKIAERDGLLAETVKSLSLD-SDRRLIEASLSCLITIS  262 (408)
Q Consensus       191 ~i~~Lv~lL~~~~~~~~~------~~Aa~~L~~La~~-~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~A~~aL~~Ls  262 (408)
                      +++.|+.-+..- +..++      .+...++.|+... ++.+..+++ .|.+.-|++-+... .-..-+..|...|.-+-
T Consensus       177 vlaLLvqnveRL-dEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaill  254 (536)
T KOG2734|consen  177 VLALLVQNVERL-DESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILL  254 (536)
T ss_pred             HHHHHHHHHHHh-hhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHh
Confidence            899998877654 44443      4456777787765 456777777 58777777755432 12346677777777766


Q ss_pred             cC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchH
Q 036338          263 SS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLN  341 (408)
Q Consensus       263 ~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~  341 (408)
                      .+ ++|+.....-.+|..|++-+.-- ..++           -+..+.....++---.|..+...++||..+... .|+.
T Consensus       255 q~s~e~~~~~~~l~GiD~lL~~la~y-k~~d-----------P~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~-EGlq  321 (536)
T KOG2734|consen  255 QNSDENRKLLGPLDGIDVLLRQLAVY-KRHD-----------PATVDEEEMMENLFDCLCSLLMAPANRERFLKG-EGLQ  321 (536)
T ss_pred             ccCchhhhhhcCcccHHHHHhhcchh-hccC-----------CCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcc-ccHH
Confidence            64 45888888999999999887421 0000           000123466677777788888899999999984 6777


Q ss_pred             HHHHHHHH
Q 036338          342 GVVQKMLK  349 (408)
Q Consensus       342 ~lv~~l~~  349 (408)
                       +..+|++
T Consensus       322 -Lm~Lmlr  328 (536)
T KOG2734|consen  322 -LMNLMLR  328 (536)
T ss_pred             -HHHHHHH
Confidence             5566666

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=95.88  E-value=0.0016  Score=67.54  Aligned_cols=46  Identities=17%  Similarity=0.351  Sum_probs=35.1

Q ss_pred             ccccCccccCCCceec---CCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           14 FRCPISLDVMKSPVSL---CTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        14 ~~Cpi~~~~~~dPv~~---~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      -.||+|..-+.|-.+.   +|+|.||..||..|-. ...+||+|+..|..
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhe
Confidence            4577887777776543   5999999999998876 35679999987654

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.0055  Score=56.78  Aligned_cols=46  Identities=24%  Similarity=0.417  Sum_probs=37.1

Q ss_pred             cccCcc-ccCCCcee----cCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           15 RCPISL-DVMKSPVS----LCTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        15 ~Cpi~~-~~~~dPv~----~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      .||.|+ +.+.+|-+    -+|||+.|.+|....|..|...||.|+..+..
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk   52 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK   52 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence            488887 34555542    27999999999999999999999999987654

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.84  E-value=0.0049  Score=59.65  Aligned_cols=48  Identities=15%  Similarity=0.306  Sum_probs=39.4

Q ss_pred             CCcccccCccccCCCce-----e---cCCCCcccHhhHHHHHhcC------CCCCCCccccc
Q 036338           11 PSFFRCPISLDVMKSPV-----S---LCTGVTYDRASIQRWLDSG------NNTCPATMQVL   58 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv-----~---~~cgh~f~r~cI~~~~~~~------~~~CP~~~~~l   58 (408)
                      ..+..|-||.+...+++     .   .+|-|+||..||.+|-...      ...||+||.+.
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS  220 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence            45789999999999988     3   4599999999999997432      35799999764

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=95.79  E-value=0.0019  Score=68.21  Aligned_cols=46  Identities=22%  Similarity=0.390  Sum_probs=39.1

Q ss_pred             ccccCccccCCCceecCCCCcccHhhHHHHHhcC-CCCCCCcccccCC
Q 036338           14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSG-NNTCPATMQVLQS   60 (408)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~-~~~CP~~~~~l~~   60 (408)
                      +.|++|.+ ..+||++.|||.||++|+.+.+... ...||.|+..+..
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence            79999999 8889999999999999999987653 3469999866543

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.75  E-value=0.0027  Score=43.35  Aligned_cols=44  Identities=18%  Similarity=0.200  Sum_probs=37.1

Q ss_pred             cccCccccCCCceecCCCCc-ccHhhHHHHHhcCCCCCCCccccc
Q 036338           15 RCPISLDVMKSPVSLCTGVT-YDRASIQRWLDSGNNTCPATMQVL   58 (408)
Q Consensus        15 ~Cpi~~~~~~dPv~~~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l   58 (408)
                      -|-||.+--.|.|+-.|||- .|..|=.+.|..++..||.||.++
T Consensus         9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi   53 (62)
T KOG4172|consen    9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI   53 (62)
T ss_pred             ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence            49999998888888899984 688887777776788999999875

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=95.63  E-value=0.13  Score=47.03  Aligned_cols=139  Identities=19%  Similarity=0.161  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHH
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSL  195 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~L  195 (408)
                      ...|+..+..++..-...-+...+  ..+|.|+..+.+.. ..+.+.|..+|..+..  .-... ..++       ++.+
T Consensus        70 ~~~A~~~l~~l~~~l~~~~~~~~~--~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~--~~~~~-~~~~-------~~~l  136 (228)
T PF12348_consen   70 SKTACQLLSDLARQLGSHFEPYAD--ILLPPLLKKLGDSK-KFIREAANNALDAIIE--SCSYS-PKIL-------LEIL  136 (228)
T ss_dssp             HHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHGGG----HHHHHHHHHHHHHHHT--TS-H---HHH-------HHHH
T ss_pred             HHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHcccc-HHHHHHHHHHHHHHHH--HCCcH-HHHH-------HHHH
Confidence            456777777777653333333333  57888888887765 1233667777777664  22100 1111       3445


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHhhcCcc-hhhHHhh---hcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHH
Q 036338          196 LLVLKQQESVDSRIESLRLLEFIAGDAD-SKVKIAE---RDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKT  269 (408)
Q Consensus       196 v~lL~~~~~~~~~~~Aa~~L~~La~~~~-~~~~i~~---~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~  269 (408)
                      ...+.+. +..+|..++..|..+...-. ....+..   ....++.+.+.+.++ ++++|++|-.+++.+...-+.+.
T Consensus       137 ~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a  212 (228)
T PF12348_consen  137 SQGLKSK-NPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERA  212 (228)
T ss_dssp             HHHTT-S--HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHhCC-CHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhh
Confidence            5566677 99999999999998865433 2222221   134788888999997 99999999999999977544443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=95.62  E-value=0.013  Score=40.05  Aligned_cols=41  Identities=22%  Similarity=0.432  Sum_probs=32.2

Q ss_pred             cccCccc--cCCCceecCCC-----CcccHhhHHHHHhcC-CCCCCCcc
Q 036338           15 RCPISLD--VMKSPVSLCTG-----VTYDRASIQRWLDSG-NNTCPATM   55 (408)
Q Consensus        15 ~Cpi~~~--~~~dPv~~~cg-----h~f~r~cI~~~~~~~-~~~CP~~~   55 (408)
                      .|-||++  .-.+|.+.||.     |.|=++|+.+|+... ..+||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4888886  44568888885     778899999999754 56799985

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=95.61  E-value=0.31  Score=47.34  Aligned_cols=64  Identities=17%  Similarity=0.158  Sum_probs=44.3

Q ss_pred             cChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcc
Q 036338          232 DGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVL  311 (408)
Q Consensus       232 ~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
                      .-.++.|...+.+. +..++.+|+.+|..+....        ..+++.+...+.++                     +..
T Consensus       179 ~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~---------------------~~~  228 (335)
T COG1413         179 PEAIPLLIELLEDE-DADVRRAAASALGQLGSEN--------VEAADLLVKALSDE---------------------SLE  228 (335)
T ss_pred             hhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC---------------------CHH
Confidence            44677888888876 6688888888888887764        33556666666643                     666


Q ss_pred             hHHHHHHHHHHHhC
Q 036338          312 ITEKALRLVEILST  325 (408)
Q Consensus       312 ~~~~a~~~L~~L~~  325 (408)
                      +...++.+|..+-.
T Consensus       229 vr~~~~~~l~~~~~  242 (335)
T COG1413         229 VRKAALLALGEIGD  242 (335)
T ss_pred             HHHHHHHHhcccCc
Confidence            66666666666543

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.53  E-value=0.7  Score=49.41  Aligned_cols=167  Identities=16%  Similarity=0.180  Sum_probs=105.8

Q ss_pred             HhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhcc
Q 036338          109 AISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKR  187 (408)
Q Consensus       109 L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~  187 (408)
                      +.+.+.. |.+|++.+-.-....+..-       -..+-+++...+.+ .++.+-.-.=|.+.+.  ..++  ..++   
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~dms-------sLf~dViK~~~trd-~ElKrL~ylYl~~yak--~~P~--~~lL---   92 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGEDMS-------SLFPDVIKNVATRD-VELKRLLYLYLERYAK--LKPE--LALL---   92 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCChH-------HHHHHHHHHHHhcC-HHHHHHHHHHHHHHhc--cCHH--HHHH---
Confidence            3343443 7788876554433322222       23444566665443 3222333233334443  2222  2333   


Q ss_pred             CcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcch
Q 036338          188 DQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRA  267 (408)
Q Consensus       188 ~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n  267 (408)
                         ++..+.+=|++. ++..|..|.+.+..|=.    .+.++   -+++++.+++.++ ++.+|+.|+-|+.++=.-+  
T Consensus        93 ---avNti~kDl~d~-N~~iR~~AlR~ls~l~~----~el~~---~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld--  158 (757)
T COG5096          93 ---AVNTIQKDLQDP-NEEIRGFALRTLSLLRV----KELLG---NIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD--  158 (757)
T ss_pred             ---HHHHHHhhccCC-CHHHHHHHHHHHHhcCh----HHHHH---HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC--
Confidence               367777778888 99999987777765531    23332   3689999999987 8899999999999886543  


Q ss_pred             HHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          268 KTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       268 ~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      +....+.|.+..+..++.+.                     ++.++..|+.+|..+-.
T Consensus       159 ~~l~~~~g~~~~l~~l~~D~---------------------dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         159 KDLYHELGLIDILKELVADS---------------------DPIVIANALASLAEIDP  195 (757)
T ss_pred             HhhhhcccHHHHHHHHhhCC---------------------CchHHHHHHHHHHHhch
Confidence            34455788899999988753                     88999999999988754

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=95.52  E-value=2  Score=44.34  Aligned_cols=185  Identities=12%  Similarity=0.121  Sum_probs=106.0

Q ss_pred             hHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHH
Q 036338          159 MLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAET  238 (408)
Q Consensus       159 ~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~L  238 (408)
                      ....++..|..++.  ..+.+ ....   -...+|.+.+.|.+. .+++|..+-.+|..++..-+|..+..    .+|.|
T Consensus       270 tK~aslellg~m~~--~ap~q-Ls~~---lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~dI~~----~ip~L  338 (569)
T KOG1242|consen  270 TKMASLELLGAMAD--CAPKQ-LSLC---LPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPDIQK----IIPTL  338 (569)
T ss_pred             hHHHHHHHHHHHHH--hchHH-HHHH---HhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHHHHH----HHHHH
Confidence            34777788887765  33332 2222   468899999999998 99999999999999987766666332    36667


Q ss_pred             HHhcccCC--------------------------------------CHHHHHHHHHHHHHhccCcchHHHHHh--cCcHH
Q 036338          239 VKSLSLDS--------------------------------------DRRLIEASLSCLITISSSKRAKTKLIN--HKLIT  278 (408)
Q Consensus       239 v~lL~~~~--------------------------------------~~~~~~~A~~aL~~Ls~~~~n~~~~~~--~G~i~  278 (408)
                      ++.+.++.                                      +...++.++.++.|+|.--++...+..  .-.+|
T Consensus       339 ld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp  418 (569)
T KOG1242|consen  339 LDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLP  418 (569)
T ss_pred             HHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhh
Confidence            66665432                                      234556666777777664433333221  11223


Q ss_pred             HHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhc
Q 036338          279 ELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSS  358 (408)
Q Consensus       279 ~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~~~~~~~~~~  358 (408)
                      .|=..+.                     +..+++++.++.+|..+-..- +...+   ...+|.+.+.+ +......-+.
T Consensus       419 ~lk~~~~---------------------d~~PEvR~vaarAL~~l~e~~-g~~~f---~d~~p~l~e~~-~~~k~~~~~~  472 (569)
T KOG1242|consen  419 GLKENLD---------------------DAVPEVRAVAARALGALLERL-GEVSF---DDLIPELSETL-TSEKSLVDRS  472 (569)
T ss_pred             HHHHHhc---------------------CCChhHHHHHHHHHHHHHHHH-Hhhcc---cccccHHHHhh-ccchhhhhhH
Confidence            3333332                     236899999999997765422 22222   36677766643 2222222233


Q ss_pred             CcHHHHHHHHhhcCCHHHHHHH
Q 036338          359 NVLTKILLLMQSNCTPAVRQMS  380 (408)
Q Consensus       359 g~~~~Ll~ll~~~~~~~~k~~A  380 (408)
                      |....|..++...+.+...+.-
T Consensus       473 g~aq~l~evl~~~~v~~~~~~~  494 (569)
T KOG1242|consen  473 GAAQDLSEVLAGLGVEKVEDIL  494 (569)
T ss_pred             HHhhhHHHHHhcccchHHHHHH
Confidence            3334444444444434333333

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=95.49  E-value=0.0045  Score=45.79  Aligned_cols=47  Identities=17%  Similarity=0.393  Sum_probs=23.1

Q ss_pred             cccccCccccCC-C---ceec----CCCCcccHhhHHHHHhc--CC--------CCCCCcccccC
Q 036338           13 FFRCPISLDVMK-S---PVSL----CTGVTYDRASIQRWLDS--GN--------NTCPATMQVLQ   59 (408)
Q Consensus        13 ~~~Cpi~~~~~~-d---Pv~~----~cgh~f~r~cI~~~~~~--~~--------~~CP~~~~~l~   59 (408)
                      +.-|+||...+. +   |+++    .|+++|=..|+.+||..  +.        +.||.|+.+++
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            467999999865 3   5554    49999999999999863  11        25999998764

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=95.46  E-value=1  Score=44.45  Aligned_cols=132  Identities=11%  Similarity=0.164  Sum_probs=93.6

Q ss_pred             HHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHH-hcCCChHHHHHHHHHHHHhhcCcchh
Q 036338          147 LVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVL-KQQESVDSRIESLRLLEFIAGDADSK  225 (408)
Q Consensus       147 Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL-~~~~~~~~~~~Aa~~L~~La~~~~~~  225 (408)
                      |-..+.+....+..--++.+|-.+..  .++.  |-.++  .+.++..++..| .+..+...+-+...+++.|+.++...
T Consensus       161 l~~~l~~~~~~~~~~~~~rcLQ~ll~--~~ey--R~~~v--~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a  234 (442)
T KOG2759|consen  161 LKEQLQSSTNNDYIQFAARCLQTLLR--VDEY--RYAFV--IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA  234 (442)
T ss_pred             HHHHHhccCCCchHHHHHHHHHHHhc--Ccch--hheee--ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH
Confidence            33344443322333556667776665  4444  66666  778888999988 43337788899999999999999988


Q ss_pred             hHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-------hHHHHHhcCcHHHHHHHhcc
Q 036338          226 VKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR-------AKTKLINHKLITELGKLITD  286 (408)
Q Consensus       226 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-------n~~~~~~~G~i~~Lv~lL~~  286 (408)
                      +.+.. .+.|+.|++++++..-..+.+-.+.+++||....+       ....|+..+ ++.-++.|..
T Consensus       235 e~~~~-~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~  300 (442)
T KOG2759|consen  235 EKLKR-FDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEE  300 (442)
T ss_pred             HHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHh
Confidence            88854 89999999999986566899999999999988662       334455544 5555666653

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.45  E-value=0.01  Score=57.03  Aligned_cols=48  Identities=19%  Similarity=0.414  Sum_probs=34.2

Q ss_pred             cccccCccccCCCc----eecCCCCcccHhhHHHHHhcCC--CCCCCcccccCC
Q 036338           13 FFRCPISLDVMKSP----VSLCTGVTYDRASIQRWLDSGN--NTCPATMQVLQS   60 (408)
Q Consensus        13 ~~~Cpi~~~~~~dP----v~~~cgh~f~r~cI~~~~~~~~--~~CP~~~~~l~~   60 (408)
                      .-.|.||-+.+-+-    -+-.|||+|.-.|+.+||+...  ..||+|+-.++.
T Consensus         4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~   57 (465)
T KOG0827|consen    4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE   57 (465)
T ss_pred             cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence            45699996554331    1234999999999999998642  579999844443

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.40  E-value=0.0094  Score=55.70  Aligned_cols=44  Identities=25%  Similarity=0.491  Sum_probs=38.4

Q ss_pred             CcccccCccccCCC---ceecCCCCcccHhhHHHHHhcCC--CCCCCcc
Q 036338           12 SFFRCPISLDVMKS---PVSLCTGVTYDRASIQRWLDSGN--NTCPATM   55 (408)
Q Consensus        12 ~~~~Cpi~~~~~~d---Pv~~~cgh~f~r~cI~~~~~~~~--~~CP~~~   55 (408)
                      .-|+||+.++.-.|   ||.+.|||...++.+...-++|.  +.||.|-
T Consensus       335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP  383 (396)
T COG5109         335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP  383 (396)
T ss_pred             ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence            34899999999888   99999999999999999887774  6799994

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.39  E-value=0.075  Score=54.86  Aligned_cols=184  Identities=15%  Similarity=0.179  Sum_probs=111.2

Q ss_pred             HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHH---HHHHhcccccc
Q 036338          102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIR---VLDLILNKIED  176 (408)
Q Consensus       102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~---~L~~L~~~~~~  176 (408)
                      ++.++....+.+.. +..|+..|..|.....-.+.+       ....++.++... +++  ..|+.   ..+|...--.+
T Consensus       200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~-------Y~~A~~~lsD~~e~VR--~aAvqlv~v~gn~~p~~~e  270 (823)
T KOG2259|consen  200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKAC-------YSRAVKHLSDDYEDVR--KAAVQLVSVWGNRCPAPLE  270 (823)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHH-------HHHHHHHhcchHHHHH--HHHHHHHHHHHhcCCCccc
Confidence            33355555555555 777888887776643222222       233477777665 444  55644   44454410011


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc----------------------------------
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA----------------------------------  222 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~----------------------------------  222 (408)
                      .+.-...+   ...++..+.+.++.. +..+|..|+++|+.+-...                                  
T Consensus       271 ~e~~e~kl---~D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~Ge  346 (823)
T KOG2259|consen  271 RESEEEKL---KDAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGE  346 (823)
T ss_pred             chhhhhhh---HHHHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCC
Confidence            11101112   235677788888888 8888888888887653211                                  


Q ss_pred             -----------------chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hHHHHHhcCcHHHHHHHh
Q 036338          223 -----------------DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR-AKTKLINHKLITELGKLI  284 (408)
Q Consensus       223 -----------------~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~G~i~~Lv~lL  284 (408)
                                       +....|.. .|+-..+|.=|.++ --+++++|+..++.|+.+.. -..     .++..|++++
T Consensus       347 wSsGk~~~advpsee~d~~~~siI~-sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMf  419 (823)
T KOG2259|consen  347 WSSGKEWNADVPSEEDDEEEESIIP-SGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMF  419 (823)
T ss_pred             cccCccccccCchhhcccccccccc-ccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHh
Confidence                             01112222 34455666666654 56899999999999987533 222     2678899999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338          285 TDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT  326 (408)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~  326 (408)
                      .+.                     ...+..+|..+|..++.+
T Consensus       420 NDE---------------------~~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  420 NDE---------------------IEVVRLKAIFALTMISVH  440 (823)
T ss_pred             ccH---------------------HHHHHHHHHHHHHHHHHH
Confidence            753                     788999999999998875

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=95.35  E-value=0.011  Score=40.81  Aligned_cols=47  Identities=15%  Similarity=0.050  Sum_probs=35.0

Q ss_pred             cccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCC
Q 036338           13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE   62 (408)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~   62 (408)
                      +..|=.|...=...++++|||..|+.|-.-   +.-.-||.|+.++...+
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~---~rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG---ERYNGCPFCGTPFEFDD   53 (55)
T ss_pred             ceeEEEccccccccccccccceeeccccCh---hhccCCCCCCCcccCCC
Confidence            445777888878889999999999998321   12235999999886644

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.24  E-value=1.7  Score=45.79  Aligned_cols=187  Identities=13%  Similarity=0.166  Sum_probs=103.2

Q ss_pred             HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHH
Q 036338          102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHL  180 (408)
Q Consensus       102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~  180 (408)
                      ++.|++.|..+++. +..|+..+..|+..+|.|.-.+      -|.+..+|...+.-=++-..+...++|+.  -+ +. 
T Consensus       183 FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L------AP~ffkllttSsNNWmLIKiiKLF~aLtp--lE-PR-  252 (877)
T KOG1059|consen  183 FPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL------APLFYKLLVTSSNNWVLIKLLKLFAALTP--LE-PR-  252 (877)
T ss_pred             HHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc------cHHHHHHHhccCCCeehHHHHHHHhhccc--cC-ch-
Confidence            44566666666665 6666666777766666654322      24455665544311123445555555553  12 21 


Q ss_pred             HHHHhccCcccHHHHHHHHhcCCChHH-HHHHHHHHH--HhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          181 MNLILKRDQDCLNSLLLVLKQQESVDS-RIESLRLLE--FIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       181 ~~~i~~~~~g~i~~Lv~lL~~~~~~~~-~~~Aa~~L~--~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                         +   ....+++|..++++. .... .-....++-  +++... +.-..+-   -++..|-.++.+. |+.++=-++-
T Consensus       253 ---L---gKKLieplt~li~sT-~AmSLlYECvNTVVa~s~s~g~~d~~asiq---LCvqKLr~fieds-DqNLKYlgLl  321 (877)
T KOG1059|consen  253 ---L---GKKLIEPITELMEST-VAMSLLYECVNTVVAVSMSSGMSDHSASIQ---LCVQKLRIFIEDS-DQNLKYLGLL  321 (877)
T ss_pred             ---h---hhhhhhHHHHHHHhh-HHHHHHHHHHHHheeehhccCCCCcHHHHH---HHHHHHhhhhhcC-CccHHHHHHH
Confidence               1   345578888888875 2211 111222111  222221 2222221   2567777777775 8888888888


Q ss_pred             HHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHh
Q 036338          257 CLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQ  335 (408)
Q Consensus       257 aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  335 (408)
                      |++.+...+.   ..|.+ --+.++..|.+                     .|..++-.|+..|..+.. .+|-..|+.
T Consensus       322 am~KI~ktHp---~~Vqa-~kdlIlrcL~D---------------------kD~SIRlrALdLl~gmVs-kkNl~eIVk  374 (877)
T KOG1059|consen  322 AMSKILKTHP---KAVQA-HKDLILRCLDD---------------------KDESIRLRALDLLYGMVS-KKNLMEIVK  374 (877)
T ss_pred             HHHHHhhhCH---HHHHH-hHHHHHHHhcc---------------------CCchhHHHHHHHHHHHhh-hhhHHHHHH
Confidence            8888877443   12211 12456777764                     388888889988888765 444444443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.22  E-value=2.7  Score=40.55  Aligned_cols=193  Identities=17%  Similarity=0.195  Sum_probs=103.2

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhh-cCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccccc--
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAK-FDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIE--  175 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~-~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~--  175 (408)
                      .+...+..+...... |..++..|..+...+- ..+++.+ ..-.+..+.+.++.+. ..+  ..|+.++..++...+  
T Consensus        44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~--~lA~~~l~Ll~ltlg~g  120 (309)
T PF05004_consen   44 KLKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQ--ALAARALALLALTLGAG  120 (309)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHH--HHHHHHHHHHhhhcCCC
Confidence            355566666665666 8899999888875432 2233322 1134666777777766 333  455566665554212  


Q ss_pred             chHHHHHHHhccCcccHHHHHHHHhcCC-ChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHH--HHHhcccC------
Q 036338          176 DQQHLMNLILKRDQDCLNSLLLVLKQQE-SVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAE--TVKSLSLD------  245 (408)
Q Consensus       176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~-~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~--Lv~lL~~~------  245 (408)
                      ++.  ..++    ....|.|.+.+..+. +...|..++.+|.-++... ..-..+......+..  ....++.+      
T Consensus       121 ~~~--~ei~----~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~  194 (309)
T PF05004_consen  121 EDS--EEIF----EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVV  194 (309)
T ss_pred             ccH--HHHH----HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccc
Confidence            222  3333    356788888888761 3345556665666554321 111222111123342  22223322      


Q ss_pred             ---CCHHHHHHHHHHHHHhccC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 036338          246 ---SDRRLIEASLSCLITISSS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVE  321 (408)
Q Consensus       246 ---~~~~~~~~A~~aL~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~  321 (408)
                         .++.+..+|+.+-.-|... +.....-.-...+|.|+.+|.++                     +..++-.|..+|.
T Consensus       195 ~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~---------------------d~~VRiAAGEaiA  253 (309)
T PF05004_consen  195 AAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSD---------------------DVDVRIAAGEAIA  253 (309)
T ss_pred             cCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC---------------------CHHHHHHHHHHHH
Confidence               1246777777776655543 33222222245799999999874                     6677766665555


Q ss_pred             HH
Q 036338          322 IL  323 (408)
Q Consensus       322 ~L  323 (408)
                      -|
T Consensus       254 ll  255 (309)
T PF05004_consen  254 LL  255 (309)
T ss_pred             HH
Confidence            54

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=95.20  E-value=0.0092  Score=57.47  Aligned_cols=47  Identities=21%  Similarity=0.297  Sum_probs=39.4

Q ss_pred             cccCccccCCCceecCCCCcccHhhHHHHHhc-CCCCCCCcccccCCC
Q 036338           15 RCPISLDVMKSPVSLCTGVTYDRASIQRWLDS-GNNTCPATMQVLQSK   61 (408)
Q Consensus        15 ~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~-~~~~CP~~~~~l~~~   61 (408)
                      .|-||-+-=+|=-+=+|||-.|-.|+..|... +..+||.||..+..+
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            59999998888666689999999999999865 467899999876543

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=95.16  E-value=1.3  Score=45.68  Aligned_cols=90  Identities=21%  Similarity=0.194  Sum_probs=71.7

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHH
Q 036338          192 LNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKL  271 (408)
Q Consensus       192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~  271 (408)
                      ++.++.-+... ...++..++.+|..|+......-.... ..+||.|.+.|.+. .+++++++..+|.++++.-+|....
T Consensus       256 lpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~dI~  332 (569)
T KOG1242|consen  256 LPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPDIQ  332 (569)
T ss_pred             hhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHHHH
Confidence            45555555555 678899999999999887766666666 67999999999986 9999999999999999977766522


Q ss_pred             HhcCcHHHHHHHhccC
Q 036338          272 INHKLITELGKLITDG  287 (408)
Q Consensus       272 ~~~G~i~~Lv~lL~~~  287 (408)
                      -   .+|.|++-+.++
T Consensus       333 ~---~ip~Lld~l~dp  345 (569)
T KOG1242|consen  333 K---IIPTLLDALADP  345 (569)
T ss_pred             H---HHHHHHHHhcCc
Confidence            2   678899999865

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.15  E-value=0.65  Score=50.62  Aligned_cols=158  Identities=16%  Similarity=0.031  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHH--HHHhhhChhhhhhhhhcCChHHHHHHHhhcCc--chhhHHHHHHHHHHhcccc
Q 036338           99 QDEVKDIIRVAISKNEDFSENLTKI--VAFAKESDENKTFLAKFDGLVVMLVEILSNVN--DVNMLKQVIRVLDLILNKI  174 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~~~~Al~~L--~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~--~~~~~e~A~~~L~~L~~~~  174 (408)
                      .+-.+..+++|+++..|-.-.+.-|  +.|+- ++.....+++. ++-...+..|....  +.+-..-|+.+|..+..+ 
T Consensus       511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv-D~SCQ~dLvKe-~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n-  587 (1387)
T KOG1517|consen  511 VGIFPYVLKLLQSSARELRPILVFIWAKILAV-DPSCQADLVKE-NGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN-  587 (1387)
T ss_pred             cchHHHHHHHhccchHhhhhhHHHHHHHHHhc-CchhHHHHHhc-cCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc-
Confidence            4556788889998876622222222  22333 36666677776 66666677776633  323234566677777651 


Q ss_pred             cchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338          175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS  254 (408)
Q Consensus       175 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A  254 (408)
                      ..-.  ++...  +.+.|..-+..|.++...-.|.-.+-.|+.|=.+.+...-.+...++.+.|+.+|+++ .++++.+|
T Consensus       588 f~lG--Q~acl--~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAA  662 (1387)
T KOG1517|consen  588 FKLG--QKACL--NGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAA  662 (1387)
T ss_pred             cchh--HHHhc--cccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHH
Confidence            2222  33344  7788888888888752466788899999999777665555565589999999999997 89999999


Q ss_pred             HHHHHHhccC
Q 036338          255 LSCLITISSS  264 (408)
Q Consensus       255 ~~aL~~Ls~~  264 (408)
                      +-||..+-.+
T Consensus       663 VFALgtfl~~  672 (1387)
T KOG1517|consen  663 VFALGTFLSN  672 (1387)
T ss_pred             HHHHHHHhcc
Confidence            9999998764

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=95.12  E-value=0.39  Score=48.85  Aligned_cols=121  Identities=13%  Similarity=0.155  Sum_probs=94.1

Q ss_pred             HHHHHHhhcCcchhhHHhhhcChHHHHHHhc---------ccCCCHHHHHHHHHHHHHhccC-cchHHHHHhcCcHHHHH
Q 036338          212 LRLLEFIAGDADSKVKIAERDGLLAETVKSL---------SLDSDRRLIEASLSCLITISSS-KRAKTKLINHKLITELG  281 (408)
Q Consensus       212 a~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL---------~~~~~~~~~~~A~~aL~~Ls~~-~~n~~~~~~~G~i~~Lv  281 (408)
                      ..+|..++.++.+...+.. ..++..|.++-         ....+..+...|+++|.|+... +..|..+++.|..+.++
T Consensus         2 L~~LRiLsRd~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    2 LETLRILSRDPTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             HHHHHHHccCcccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            4567788888888888876 55688888877         3334789999999999998775 45788888999999999


Q ss_pred             HHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhhcCchHHHHHHHHH
Q 036338          282 KLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQDAALLNGVVQKMLK  349 (408)
Q Consensus       282 ~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g~i~~lv~~l~~  349 (408)
                      ..|....                ....+..+.-...++|.-+.. .++.+.+++.+.+++..++..|.+
T Consensus        81 ~~Lk~~~----------------~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~  133 (446)
T PF10165_consen   81 ERLKNYS----------------DSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALER  133 (446)
T ss_pred             HHHHccc----------------ccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHH
Confidence            9998630                001256777888899988874 788899998877888888887665

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.07  E-value=0.23  Score=50.57  Aligned_cols=192  Identities=19%  Similarity=0.230  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHH---HHHHhcccc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIR---VLDLILNKI  174 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~---~L~~L~~~~  174 (408)
                      .+.++.++..+++++++ |..|+.=|..+.+-.+  +..+.-.+|++..++.++.+.......+.+..   .|..+.   
T Consensus       249 ~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g--~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~---  323 (675)
T KOG0212|consen  249 DDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG--RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV---  323 (675)
T ss_pred             ccchhhccccccCCcHHHHHHHHHHHHHHhcCCC--cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH---
Confidence            55677888899999988 9999988888876533  23344344777777887776652111132222   222232   


Q ss_pred             cchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338          175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS  254 (408)
Q Consensus       175 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A  254 (408)
                       +.+..+.-|-  -...|..|.+.|.+. ..++|..+..-+..|-....++..... ...++.|++-|.+. +.++...+
T Consensus       324 -s~~~~~~~id--~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~~h~-~~if~tLL~tLsd~-sd~vvl~~  397 (675)
T KOG0212|consen  324 -SSERLKEEID--YGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLLVHN-DSIFLTLLKTLSDR-SDEVVLLA  397 (675)
T ss_pred             -hhhhhccccc--hHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhhhhc-cHHHHHHHHhhcCc-hhHHHHHH
Confidence             2221122231  124578888888888 999999999888888777666666655 67999999999987 77999999


Q ss_pred             HHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          255 LSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       255 ~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      +..|.++|.++...      +.++.+..||.--.                  .+..-+...+.-+++.||.
T Consensus       398 L~lla~i~~s~~~~------~~~~fl~sLL~~f~------------------e~~~~l~~Rg~lIIRqlC~  444 (675)
T KOG0212|consen  398 LSLLASICSSSNSP------NLRKFLLSLLEMFK------------------EDTKLLEVRGNLIIRQLCL  444 (675)
T ss_pred             HHHHHHHhcCcccc------cHHHHHHHHHHHHh------------------hhhHHHHhhhhHHHHHHHH
Confidence            99999999987654      34555555553210                  1134455666666666664

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.03  E-value=0.0074  Score=44.27  Aligned_cols=49  Identities=22%  Similarity=0.344  Sum_probs=37.9

Q ss_pred             CCcccccCccccCCC-ceec-CCCCcccHhhHHHHHhcC--CCCCCCcccccC
Q 036338           11 PSFFRCPISLDVMKS-PVSL-CTGVTYDRASIQRWLDSG--NNTCPATMQVLQ   59 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~d-Pv~~-~cgh~f~r~cI~~~~~~~--~~~CP~~~~~l~   59 (408)
                      |-+-.||-|+-.=.| |.++ -|-|.|-..||.+|+...  ...||-|||.++
T Consensus        29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            445567777766555 8777 499999999999999753  367999998754

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=95.01  E-value=0.12  Score=41.12  Aligned_cols=66  Identities=8%  Similarity=0.130  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHh
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLIL  185 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~  185 (408)
                      |..-++.|.+++.+++.++..+++. |+||.++..-.-++ .+-..|.|+.++.||+.  +..+. +++|.
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~-~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e--~n~eN-Q~~I~   69 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVREL-GGIPLILSCCNIDDHNPFIREWAIFAIRNLCE--GNPEN-QEFIA   69 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHhcCCCcccHHHHHHHHHHHHHHHh--CCHHH-HHHHH
Confidence            3456788999999999999999999 99999998875544 45566999999999997  44332 56554

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.88  E-value=0.016  Score=55.47  Aligned_cols=48  Identities=23%  Similarity=0.222  Sum_probs=38.5

Q ss_pred             CCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338            7 YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVL   58 (408)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l   58 (408)
                      ..+.|....|-||.+-..+-+.++|||.-|  |+.....  ...||+|++.+
T Consensus       299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI  346 (355)
T KOG1571|consen  299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRI  346 (355)
T ss_pred             ccccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHH
Confidence            345677778999999999999999999988  7665543  34599999864

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=94.87  E-value=0.19  Score=50.90  Aligned_cols=174  Identities=10%  Similarity=0.097  Sum_probs=116.7

Q ss_pred             HHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHH
Q 036338          103 KDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLM  181 (408)
Q Consensus       103 ~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~  181 (408)
                      +.|++.|+.++.- ..-+...+.++.-.-...+..+.+. |.|..|+.++.+.++ ..+.+..++|.++..  ++++..+
T Consensus       434 elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~-~iIdvl~~~v~sKDd-aLqans~wvlrHlmy--ncq~~ek  509 (743)
T COG5369         434 ELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEK-SIIDVLVNLVMSKDD-ALQANSEWVLRHLMY--NCQKNEK  509 (743)
T ss_pred             HHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHh-hHHHHHHHHhhcchh-hhhhcchhhhhhhhh--cCcchhh
Confidence            3444444443221 2335556666666666778888888 999999999997762 234888999999886  4433212


Q ss_pred             -HHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC----cchhhHHhh---hcChHHHHHHhcccCCCHHHHHH
Q 036338          182 -NLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD----ADSKVKIAE---RDGLLAETVKSLSLDSDRRLIEA  253 (408)
Q Consensus       182 -~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~----~~~~~~i~~---~~g~i~~Lv~lL~~~~~~~~~~~  253 (408)
                       +.+   ..-++..++.+...+ ...+++....+|.|+..+    ++.+.....   ..-.+..|++.++.. +|-..+.
T Consensus       510 f~~L---akig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~-np~~i~~  584 (743)
T COG5369         510 FKFL---AKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEEN-NPMEILE  584 (743)
T ss_pred             hhhH---HhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhc-Cchhhhh
Confidence             334   456689999998888 899999999999999763    223333221   122456677777765 6667777


Q ss_pred             HHHHHHHhccCcchHHHHH--hcCcHHHHHHHhc
Q 036338          254 SLSCLITISSSKRAKTKLI--NHKLITELGKLIT  285 (408)
Q Consensus       254 A~~aL~~Ls~~~~n~~~~~--~~G~i~~Lv~lL~  285 (408)
                      .+-.|.+++..+++...++  ....+..+-+.|.
T Consensus       585 ~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~  618 (743)
T COG5369         585 GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILD  618 (743)
T ss_pred             hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHH
Confidence            7888888888877777766  3555555555554

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=94.85  E-value=1.2  Score=48.18  Aligned_cols=231  Identities=14%  Similarity=0.123  Sum_probs=143.1

Q ss_pred             HHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHH-HHHHhcccccchHHH
Q 036338          104 DIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIR-VLDLILNKIEDQQHL  180 (408)
Q Consensus       104 ~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~-~L~~L~~~~~~~~~~  180 (408)
                      .+++.+.+++.+ +..|..+|.+++.++-.         ..+|.++....+.. ..-.+-+++. +|...+.   +  . 
T Consensus       861 ~iieaf~sp~edvksAAs~ALGsl~vgnl~---------~yLpfil~qi~sqpk~QyLLLhSlkevi~~~sv---d--~-  925 (1233)
T KOG1824|consen  861 TIIEAFNSPSEDVKSAASYALGSLAVGNLP---------KYLPFILEQIESQPKRQYLLLHSLKEVIVSASV---D--G-  925 (1233)
T ss_pred             HHHHHcCCChHHHHHHHHHHhhhhhcCchH---------hHHHHHHHHHhcchHhHHHHHHHHHHHHHHhcc---c--h-
Confidence            456677777777 77788888888776432         56777777776644 1111122221 1111110   1  0 


Q ss_pred             HHHHhccCcccHHHHHHHHhc---CCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          181 MNLILKRDQDCLNSLLLVLKQ---QESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       181 ~~~i~~~~~g~i~~Lv~lL~~---~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                             -...++.+-.+|-.   +....+|.-.+..|+.|+..+.        ...+|.|=..++++ ++..+..++.|
T Consensus       926 -------~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep--------esLlpkL~~~~~S~-a~~~rs~vvsa  989 (1233)
T KOG1824|consen  926 -------LKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP--------ESLLPKLKLLLRSE-ASNTRSSVVSA  989 (1233)
T ss_pred             -------hhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh--------HHHHHHHHHHhcCC-Ccchhhhhhhe
Confidence                   01223334444421   2144567778888888876543        34678888888887 77788888888


Q ss_pred             HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhc
Q 036338          258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDA  337 (408)
Q Consensus       258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~  337 (408)
                      +.-.-+............-|.-.+.+++++                     |..+...|+.++...+.   |+...++  
T Consensus       990 vKfsisd~p~~id~~lk~~ig~fl~~~~dp---------------------Dl~VrrvaLvv~nSaah---NKpslIr-- 1043 (1233)
T KOG1824|consen  990 VKFSISDQPQPIDPLLKQQIGDFLKLLRDP---------------------DLEVRRVALVVLNSAAH---NKPSLIR-- 1043 (1233)
T ss_pred             eeeeecCCCCccCHHHHHHHHHHHHHHhCC---------------------chhHHHHHHHHHHHHHc---cCHhHHH--
Confidence            876555444444444444566778888865                     99999999999988866   5555555  


Q ss_pred             CchHHHHHHHHH--HHHHHH---HhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhhcCcccccccc
Q 036338          338 ALLNGVVQKMLK--TAQEAV---SSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYKSCLASYD  399 (408)
Q Consensus       338 g~i~~lv~~l~~--~~~~~~---~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~c~~~~~  399 (408)
                      +..|-|+..|-.  .++.+.   ++.|-|.+.+     +.+-.+|+.|.+-+--|-.   +|++..|
T Consensus      1044 DllpeLLp~Ly~eTkvrkelIreVeMGPFKH~V-----DdgLd~RKaaFEcmytLLd---scld~~d 1102 (1233)
T KOG1824|consen 1044 DLLPELLPLLYSETKVRKELIREVEMGPFKHTV-----DDGLDLRKAAFECMYTLLD---SCLDRLD 1102 (1233)
T ss_pred             HHHHHHHHHHHHhhhhhHhhhhhhcccCccccc-----cchHHHHHHHHHHHHHHHH---hhhhhcc
Confidence            356666665555  455554   4667777765     3345689999888887777   6776543

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=94.84  E-value=0.24  Score=39.11  Aligned_cols=53  Identities=25%  Similarity=0.330  Sum_probs=41.8

Q ss_pred             cChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHH--hcCcHHHHHHHhccC
Q 036338          232 DGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLI--NHKLITELGKLITDG  287 (408)
Q Consensus       232 ~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~--~~G~i~~Lv~lL~~~  287 (408)
                      .-++++++..+.+. +.++|..|+.+|+|++....  ..+.  =..+++.|..++.++
T Consensus        26 ~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~   80 (97)
T PF12755_consen   26 DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADP   80 (97)
T ss_pred             HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC
Confidence            34899999999997 99999999999999987543  3444  256778888888753

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]

Probab=94.82  E-value=0.017  Score=51.86  Aligned_cols=56  Identities=23%  Similarity=0.300  Sum_probs=45.7

Q ss_pred             ccccCccccCCCceec-CCCCcccHhhHHHHHhc-CCCCCCC--cccccCCCCCcccHHH
Q 036338           14 FRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDS-GNNTCPA--TMQVLQSKEFVPNRTL   69 (408)
Q Consensus        14 ~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~-~~~~CP~--~~~~l~~~~l~~n~~l   69 (408)
                      .+|||+.+....|++. .|.|.|++..|.++++. ....||.  |.+....++++.++.|
T Consensus       190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il  249 (275)
T COG5627         190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL  249 (275)
T ss_pred             ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence            5899999999999876 59999999999999873 2456997  7777777777776655

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.77  E-value=0.27  Score=51.67  Aligned_cols=151  Identities=14%  Similarity=0.054  Sum_probs=99.3

Q ss_pred             ChHHHHHHHhhcCc-----ch-hhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHH
Q 036338          142 GLVVMLVEILSNVN-----DV-NMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLL  215 (408)
Q Consensus       142 G~i~~Lv~lL~s~~-----~~-~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L  215 (408)
                      +++|.|+++|...+     |. .....|-..|..++.     . .+..|+  . -++|.+-.-++++ +..-|+.|+.+.
T Consensus       319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-----~-~~D~Iv--~-~Vl~Fiee~i~~p-dwr~reaavmAF  388 (859)
T KOG1241|consen  319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-----C-VGDDIV--P-HVLPFIEENIQNP-DWRNREAAVMAF  388 (859)
T ss_pred             HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH-----H-hcccch--h-hhHHHHHHhcCCc-chhhhhHHHHHH
Confidence            67899999997632     11 111333334444332     1 123343  1 3344444477788 999999999999


Q ss_pred             HHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hH-HHHHhcCcHHHHHHHhccCCCCCCC
Q 036338          216 EFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR-AK-TKLINHKLITELGKLITDGHNGNGS  293 (408)
Q Consensus       216 ~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~-~~~~~~G~i~~Lv~lL~~~~~~~~~  293 (408)
                      +.+-..++.....-...+++|.++.++.++ +.-+++.++|+|..++..-. .+ ......+.++.|+.=|.+       
T Consensus       389 GSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-------  460 (859)
T KOG1241|consen  389 GSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-------  460 (859)
T ss_pred             HhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-------
Confidence            988877653333222367899999999976 88899999999999987533 11 112234566666666653       


Q ss_pred             CCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          294 GNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                                     .+.+..++++++.+|+.
T Consensus       461 ---------------ePrva~N~CWAf~~Lae  477 (859)
T KOG1241|consen  461 ---------------EPRVASNVCWAFISLAE  477 (859)
T ss_pred             ---------------CchHHHHHHHHHHHHHH
Confidence                           68999999999999984

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.75  E-value=0.37  Score=43.10  Aligned_cols=121  Identities=9%  Similarity=-0.004  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhcccccchHHHHHHHhcc-------------CcccHHHHHHHHhcCC-----ChHHHHHHHHHHHHhhcCc
Q 036338          161 KQVIRVLDLILNKIEDQQHLMNLILKR-------------DQDCLNSLLLVLKQQE-----SVDSRIESLRLLEFIAGDA  222 (408)
Q Consensus       161 e~A~~~L~~L~~~~~~~~~~~~~i~~~-------------~~g~i~~Lv~lL~~~~-----~~~~~~~Aa~~L~~La~~~  222 (408)
                      ..++.+|.||+.  .+... +.++...             +...+..|+..+..|.     ......+.+.++.|++..+
T Consensus        13 dl~~MLLsNlT~--~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~   89 (192)
T PF04063_consen   13 DLACMLLSNLTR--SDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP   89 (192)
T ss_pred             HHHHHHHHHhcc--chHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence            566777778876  33332 3232211             2346788888887621     3345578999999999999


Q ss_pred             chhhHHhhhc-Ch--HHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHh---cCcHHHHHHHhc
Q 036338          223 DSKVKIAERD-GL--LAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLIN---HKLITELGKLIT  285 (408)
Q Consensus       223 ~~~~~i~~~~-g~--i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~---~G~i~~Lv~lL~  285 (408)
                      +.|..+.... +.  +..|+.+.... +..=++-++++|.|+|...+....+..   .+++|.|+--|.
T Consensus        90 ~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   90 EGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            9999998533 33  56666677776 777888899999999999988888885   366666666664

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=94.52  E-value=2.9  Score=40.16  Aligned_cols=219  Identities=15%  Similarity=0.086  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHH--HHHhhcCcchhhHHHHHHHHHHhccccc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVML--VEILSNVNDVNMLKQVIRVLDLILNKIE  175 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~L--v~lL~s~~~~~~~e~A~~~L~~L~~~~~  175 (408)
                      .+-++.++..+...+.+ ...|...|..++.- +..-+.|-+. .....+  ..+--..++. +....+..+..+..  -
T Consensus       127 aeilklildcIggeddeVAkAAiesikrialf-paaleaiFeS-ellDdlhlrnlaakcndi-aRvRVleLIieifS--i  201 (524)
T KOG4413|consen  127 AEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFES-ELLDDLHLRNLAAKCNDI-ARVRVLELIIEIFS--I  201 (524)
T ss_pred             hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhccc-ccCChHHHhHHHhhhhhH-HHHHHHHHHHHHHh--c
Confidence            44556666677777766 77788888888764 4444444444 333222  2221111111 11223333333332  1


Q ss_pred             chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccC-CCHHHHHHH
Q 036338          176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLD-SDRRLIEAS  254 (408)
Q Consensus       176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~A  254 (408)
                      ..+. .+...  ++|.+..|..-|+...+.-++.+.......|+..+..++.+.. .|.|..+-.++... ++|--+-.+
T Consensus       202 Spes-aneck--kSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfra  277 (524)
T KOG4413|consen  202 SPES-ANECK--KSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRA  277 (524)
T ss_pred             CHHH-HhHhh--hhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHH
Confidence            2222 33444  7898888888887643777888899999999999999999987 89999988888632 244333223


Q ss_pred             HHHHH----HhccCcchHHHHHhc--CcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHH
Q 036338          255 LSCLI----TISSSKRAKTKLINH--KLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQ  328 (408)
Q Consensus       255 ~~aL~----~Ls~~~~n~~~~~~~--G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~  328 (408)
                      +.-..    ++...+-.-..+.++  -+|+-..+++..                     .|+..++.|..+|..|-++.+
T Consensus       278 lmgfgkffgkeaimdvseeaicealiiaidgsfEmiEm---------------------nDpdaieaAiDalGilGSnte  336 (524)
T KOG4413|consen  278 LMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEM---------------------NDPDAIEAAIDALGILGSNTE  336 (524)
T ss_pred             HHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhc---------------------CCchHHHHHHHHHHhccCCcc
Confidence            32222    222222122222221  123333444443                     388999999999999998888


Q ss_pred             HHHHHHhhcCchHHHHHHHHH
Q 036338          329 GRMEICQDAALLNGVVQKMLK  349 (408)
Q Consensus       329 ~~~~~~~~~g~i~~lv~~l~~  349 (408)
                      +..-+...  +-|..-.++.+
T Consensus       337 GadlllkT--gppaaehllar  355 (524)
T KOG4413|consen  337 GADLLLKT--GPPAAEHLLAR  355 (524)
T ss_pred             hhHHHhcc--CChHHHHHHHH
Confidence            88766653  34444444444

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.42  E-value=8.7  Score=41.89  Aligned_cols=262  Identities=13%  Similarity=0.198  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHhcC-----ChhHHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-------chhhHHHHHHHH
Q 036338          100 DEVKDIIRVAISK-----NEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-------DVNMLKQVIRVL  167 (408)
Q Consensus       100 ~~i~~Lv~~L~s~-----~~~~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-------~~~~~e~A~~~L  167 (408)
                      +.+..++..+.+-     ..+....+-.|...+-.-..||+.+.+. |+++.|++.|...-       .....|..+.++
T Consensus       117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~-~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii  195 (802)
T PF13764_consen  117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLEL-NALNRLLSVLNRALQANQNSSQAEIAEQLLEII  195 (802)
T ss_pred             CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHc-CCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence            3455566666542     1223444444444444458999999999 99999999995311       123345555555


Q ss_pred             HHhcccccchHH--HH---HHHhc-----cCcccHHHHHHHHhcC---CChHHHHHHHHHHHHhhcCcchhhHHhhhcCh
Q 036338          168 DLILNKIEDQQH--LM---NLILK-----RDQDCLNSLLLVLKQQ---ESVDSRIESLRLLEFIAGDADSKVKIAERDGL  234 (408)
Q Consensus       168 ~~L~~~~~~~~~--~~---~~i~~-----~~~g~i~~Lv~lL~~~---~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~  234 (408)
                      -.+..   +.+.  ..   ....-     ++...|..|++.+.+.   .+.......+++|-+|+...+.+.....  ..
T Consensus       196 E~ll~---ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv--~~  270 (802)
T PF13764_consen  196 ESLLS---EANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV--EH  270 (802)
T ss_pred             HHHHH---HHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH--HH
Confidence            44432   1110  00   00100     0112266666666643   1567788899999999987754444332  12


Q ss_pred             HHHHHHhcccC--CCHHHHHHHHHHHHHhcc----C---cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCC
Q 036338          235 LAETVKSLSLD--SDRRLIEASLSCLITISS----S---KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGS  305 (408)
Q Consensus       235 i~~Lv~lL~~~--~~~~~~~~A~~aL~~Ls~----~---~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~  305 (408)
                      +.+.+++=+-+  ...+. +..+..+..++.    +   ..-|..+++.|++...++.|....-        .. ....+
T Consensus       271 F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P--------~~-~~~~s  340 (802)
T PF13764_consen  271 FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFP--------SL-KNTDS  340 (802)
T ss_pred             HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCc--------cc-ccCCC
Confidence            44444432211  01111 222444444432    2   2357888899999999998875310        00 00000


Q ss_pred             CCC----CcchHHHHHHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHH------------HHHHHHHhcCcHHHHHHHH
Q 036338          306 GNG----TVLITEKALRLVEILSTT-KQGRMEICQDAALLNGVVQKMLK------------TAQEAVSSSNVLTKILLLM  368 (408)
Q Consensus       306 ~~~----~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~------------~~~~~~~~~g~~~~Ll~ll  368 (408)
                      ...    .......++..|.-|+.. ...+.. ... ..++ ++..|-.            ...+++.+...+...+.-+
T Consensus       341 ~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ~~-~~~-~~l~-~lH~LEqvss~~~IGslAEnlLeal~~~~~v~~~I~~l  417 (802)
T PF13764_consen  341 PEWKEFLSRPSLPYILRLLRGLARGHEPTQLL-IAE-QLLP-LLHRLEQVSSEEHIGSLAENLLEALAENEDVAKKIQNL  417 (802)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHhcCHHHHHH-HHh-hHHH-HHHHhhcCCCccchHHHHHHHHHHHhcChhHHHHHHHH
Confidence            000    134446788888888864 444444 332 5665 3332332            2334444444456666666


Q ss_pred             hhcCCHHHHHHH
Q 036338          369 QSNCTPAVRQMS  380 (408)
Q Consensus       369 ~~~~~~~~k~~A  380 (408)
                      +.......|++|
T Consensus       418 R~~Tr~ekk~~A  429 (802)
T PF13764_consen  418 RKETRQEKKRLA  429 (802)
T ss_pred             HHHHHHHHHHHH
Confidence            544333333333

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.29  E-value=0.016  Score=59.03  Aligned_cols=62  Identities=29%  Similarity=0.360  Sum_probs=41.0

Q ss_pred             CCCCcccccCccccCC----CceecCCCCcccHhhHHHHHhcCCCCCC--Ccccc--cCCCCCcccHHHHHHH
Q 036338            9 TVPSFFRCPISLDVMK----SPVSLCTGVTYDRASIQRWLDSGNNTCP--ATMQV--LQSKEFVPNRTLQRLI   73 (408)
Q Consensus         9 ~~~~~~~Cpi~~~~~~----dPv~~~cgh~f~r~cI~~~~~~~~~~CP--~~~~~--l~~~~l~~n~~l~~~I   73 (408)
                      +..+-+.|+||...|.    .||.+-||||.|+.|.+.....   +||  ...-.  .+.++..-|+++-+.+
T Consensus         7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp~~~De~~~~~~~~e~p~n~alL~~~   76 (861)
T KOG3161|consen    7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCPTKRDEDSSLMQLKEEPRNYALLRRE   76 (861)
T ss_pred             hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCCCCccccchhcChhhcchhHHHHHhh
Confidence            3445689999966664    3999999999999999987653   566  22111  2224444566654443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=94.00  E-value=8.7  Score=39.74  Aligned_cols=51  Identities=18%  Similarity=0.239  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcc
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILN  172 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~  172 (408)
                      +.++++.+..++.++  .-..+.+  -+|..|-.+|+++. ..+  -.|+.+|..|+.
T Consensus       281 ~lE~Ar~v~~~~~~n--v~~~~~~--~~vs~L~~fL~s~rv~~r--FsA~Riln~lam  332 (898)
T COG5240         281 FLEAARAVCALSEEN--VGSQFVD--QTVSSLRTFLKSTRVVLR--FSAMRILNQLAM  332 (898)
T ss_pred             hHHHHHHHHHHHHhc--cCHHHHH--HHHHHHHHHHhcchHHHH--HHHHHHHHHHHh
Confidence            788999988887765  1223333  24666777777766 334  788889888875

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=93.98  E-value=6.2  Score=37.99  Aligned_cols=181  Identities=14%  Similarity=0.172  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHhhhChhhh----hhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCccc
Q 036338          116 FSENLTKIVAFAKESDENK----TFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDC  191 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r----~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~  191 (408)
                      +.-+.+.+..+..+++.|-    ..++.. |..+.++.++...+ ..+...|...+..++.  ....  ...|-  .+..
T Consensus        99 KiLackqigcilEdcDtnaVseillvvNa-eilklildcIgged-deVAkAAiesikrial--fpaa--leaiF--eSel  170 (524)
T KOG4413|consen   99 KILACKQIGCILEDCDTNAVSEILLVVNA-EILKLILDCIGGED-DEVAKAAIESIKRIAL--FPAA--LEAIF--ESEL  170 (524)
T ss_pred             hhhhHhhhhHHHhcCchhhHHHHHHHhhh-hHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh--cHHH--HHHhc--cccc
Confidence            6667777777777766442    235577 99999999998776 2234677777777775  3333  33343  4444


Q ss_pred             HHHHH--HHHhcCCChHHHHHHHHHHHHhhc-CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchH
Q 036338          192 LNSLL--LVLKQQESVDSRIESLRLLEFIAG-DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAK  268 (408)
Q Consensus       192 i~~Lv--~lL~~~~~~~~~~~Aa~~L~~La~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~  268 (408)
                      +..+-  .+--.- +.-.|.+...+|-.+.+ .++.....-. .|.+..|..=|+...|.-++.......+.|......|
T Consensus       171 lDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckk-SGLldlLeaElkGteDtLVianciElvteLaeteHgr  248 (524)
T KOG4413|consen  171 LDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKK-SGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGR  248 (524)
T ss_pred             CChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhh-hhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhh
Confidence            44332  222223 56677777777777755 4444444444 7888888887775347778888888899999988888


Q ss_pred             HHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          269 TKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       269 ~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      ..+.+.|.|+.+-..+...                   +.++--+-.++.....+-.
T Consensus       249 eflaQeglIdlicnIIsGa-------------------dsdPfekfralmgfgkffg  286 (524)
T KOG4413|consen  249 EFLAQEGLIDLICNIISGA-------------------DSDPFEKFRALMGFGKFFG  286 (524)
T ss_pred             hhcchhhHHHHHHHHhhCC-------------------CCCcHHHHHHHHHHHHHhc
Confidence            8888999999998888642                   3455555556666555543

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.84  E-value=0.036  Score=52.66  Aligned_cols=46  Identities=15%  Similarity=0.039  Sum_probs=37.9

Q ss_pred             CcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338           12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVL   58 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l   58 (408)
                      ++-+||||-.---+.|..||||.-|+.||.+.+-+ ...|=.|+...
T Consensus       421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv  466 (489)
T KOG4692|consen  421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTV  466 (489)
T ss_pred             ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEeccee
Confidence            67899999998888899999999999999999874 34466665443

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=93.83  E-value=0.47  Score=35.29  Aligned_cols=66  Identities=17%  Similarity=0.233  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHH
Q 036338          250 LIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQG  329 (408)
Q Consensus       250 ~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~  329 (408)
                      -.++|++|+.++++.+.....+-+.++|+.++++...                    .+...++.-|..+|..++.+.++
T Consensus         3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~--------------------s~v~siRGT~fy~Lglis~T~~G   62 (73)
T PF14668_consen    3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAEN--------------------SPVLSIRGTCFYVLGLISSTEEG   62 (73)
T ss_pred             HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHh--------------------CCccchHHHHHHHHHHHhCCHHH
Confidence            3678999999999988877777789999999999975                    34778999999999999999999


Q ss_pred             HHHHHh
Q 036338          330 RMEICQ  335 (408)
Q Consensus       330 ~~~~~~  335 (408)
                      .+.+.+
T Consensus        63 ~~~L~~   68 (73)
T PF14668_consen   63 AEILDE   68 (73)
T ss_pred             HHHHHH
Confidence            887765

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=93.82  E-value=4.5  Score=39.94  Aligned_cols=229  Identities=18%  Similarity=0.210  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHhcCChh--HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccccc
Q 036338           99 QDEVKDIIRVAISKNED--FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIE  175 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~--~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~  175 (408)
                      .+.+..++..+.++.+.  |..++-.|..-+. ++..|..+..+ |.+..+++.+.... +...--.++.+++-++.   
T Consensus        20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~-g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~---   94 (361)
T PF07814_consen   20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAH-GLVKRLFKALSDAPDDDILALATAAILYVLSR---   94 (361)
T ss_pred             HHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHc-CcHHHHHHHhccccchHHHHHHHHHHHHHHcc---
Confidence            57888999999855443  7778888887777 48999999999 99999999996544 32222233444444543   


Q ss_pred             chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHH-HHHHHhhcCcchhhHHhhhcChHHHHHHhc---c---c--CC
Q 036338          176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESL-RLLEFIAGDADSKVKIAERDGLLAETVKSL---S---L--DS  246 (408)
Q Consensus       176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa-~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL---~---~--~~  246 (408)
                      +... -.++.  +.+.+..++++|............- .-=.++++       +.+  +.+...-+++   .   .  ..
T Consensus        95 d~~~-~~l~~--~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk-------~~~--~~~~~~~~~~~~~~~~~~~~~~  162 (361)
T PF07814_consen   95 DGLN-MHLLL--DRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK-------VQQ--KSRSLCKELLSSGSSWKSPKPP  162 (361)
T ss_pred             CCcc-hhhhh--chhHHHHHHHHhccccccccccchhhhhhhhhhH-------HHH--HHHHHHHHHHhccccccccCCc
Confidence            3221 23333  6677777788887110000000000 00001110       000  0111111111   0   0  00


Q ss_pred             CHHHHHHHHHHHHHhc--------------c-CcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcc
Q 036338          247 DRRLIEASLSCLITIS--------------S-SKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVL  311 (408)
Q Consensus       247 ~~~~~~~A~~aL~~Ls--------------~-~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
                      ...-+-.|+.+|-.++              . .+.-+..+.+.|++..+++.+.+... ..    ............+..
T Consensus       163 ~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~-~~----~~~~~~~~~~~~~l~  237 (361)
T PF07814_consen  163 ELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHS-SL----SSADAWDDPSLQSLI  237 (361)
T ss_pred             ccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhh-hh----hhhhhccccchHHHH
Confidence            1223344555555553              0 11245667788999999999863100 00    000001111122345


Q ss_pred             hHHHHHHHHHHHhC-CHHHHHHHHhhc-CchHHHHHHHHH
Q 036338          312 ITEKALRLVEILST-TKQGRMEICQDA-ALLNGVVQKMLK  349 (408)
Q Consensus       312 ~~~~a~~~L~~L~~-~~~~~~~~~~~~-g~i~~lv~~l~~  349 (408)
                      ..+.++.+|++-+. +++++....... +..+.+...+++
T Consensus       238 ~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~  277 (361)
T PF07814_consen  238 DLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLR  277 (361)
T ss_pred             HHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHH
Confidence            67889999999874 566777776542 333444443443

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=93.71  E-value=0.1  Score=31.70  Aligned_cols=29  Identities=24%  Similarity=0.303  Sum_probs=25.3

Q ss_pred             hHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338          234 LLAETVKSLSLDSDRRLIEASLSCLITISS  263 (408)
Q Consensus       234 ~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~  263 (408)
                      .+|.++++++++ ++++|.+|+.+|.+++.
T Consensus         1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence            478999999997 99999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.64  E-value=2.2  Score=44.60  Aligned_cols=176  Identities=11%  Similarity=0.122  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhh--h-hhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTF--L-AKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKI  174 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~--i-~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~  174 (408)
                      ++-++.|.+.|.+.+.. +..|..+|..+++++.+.-+.  . .-..-.+|.++.+.++++ ++...+|+..+-....  
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~--  203 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFII--  203 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheee--
Confidence            77888999999988755 777888888888776543221  1 001135888899998886 3344888887755443  


Q ss_pred             cchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338          175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS  254 (408)
Q Consensus       175 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A  254 (408)
                      ...   +.++. .-...++.+..+-... ++++|.+.+.++..|......|-.=-- .++++..+..-++. +..+.-.|
T Consensus       204 ~~~---qal~~-~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~-dE~VALEA  276 (885)
T KOG2023|consen  204 IQT---QALYV-HIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDV-DENVALEA  276 (885)
T ss_pred             cCc---HHHHH-HHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCc-chhHHHHH
Confidence            121   22222 0124566666665556 999999999999998866543333222 56788888877776 77788889


Q ss_pred             HHHHHHhccCcchHHHHHh--cCcHHHHHHHh
Q 036338          255 LSCLITISSSKRAKTKLIN--HKLITELGKLI  284 (408)
Q Consensus       255 ~~aL~~Ls~~~~n~~~~~~--~G~i~~Lv~lL  284 (408)
                      +.....++..+-.+..+..  ...||.|+.-+
T Consensus       277 CEFwla~aeqpi~~~~L~p~l~kliPvLl~~M  308 (885)
T KOG2023|consen  277 CEFWLALAEQPICKEVLQPYLDKLIPVLLSGM  308 (885)
T ss_pred             HHHHHHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence            9999999998865555553  56788887544

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=93.64  E-value=1.6  Score=46.18  Aligned_cols=172  Identities=13%  Similarity=0.180  Sum_probs=108.4

Q ss_pred             HHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHH-hcccccchH----H---HHHHHhc----cCccc
Q 036338          125 AFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDL-ILNKIEDQQ----H---LMNLILK----RDQDC  191 (408)
Q Consensus       125 ~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~-L~~~~~~~~----~---~~~~i~~----~~~g~  191 (408)
                      .+=.+++.+|...+   +.+..++..|...+ +.+..|.-+..+.+ +.....++.    .   +-+.+..    .-+-+
T Consensus       724 ~lkde~e~yrkm~~---etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi  800 (1172)
T KOG0213|consen  724 DLKDEPEQYRKMVA---ETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQI  800 (1172)
T ss_pred             hhccccHHHHHHHH---HHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHH
Confidence            33345667777766   55888888887666 54433443333222 221000110    0   0011110    01233


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh---hHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchH
Q 036338          192 LNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK---VKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAK  268 (408)
Q Consensus       192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~---~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~  268 (408)
                      +..++.+|++. +..+|++|+.++..++..-..|   +.++. .|.|  |...|... .+++.-.-++||..+......-
T Consensus       801 ~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~-lGvv--LyEylgee-ypEvLgsILgAikaI~nvigm~  875 (1172)
T KOG0213|consen  801 CSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGH-LGVV--LYEYLGEE-YPEVLGSILGAIKAIVNVIGMT  875 (1172)
T ss_pred             HHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHH-hhHH--HHHhcCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence            55667888998 9999999999999998643322   34444 5655  78888876 8999998888888887654322


Q ss_pred             HHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          269 TKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       269 ~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      +..- -.|.+|.|.-.|.+.                     ...++++....+..++.
T Consensus       876 km~pPi~dllPrltPILknr---------------------heKVqen~IdLvg~Iad  912 (1172)
T KOG0213|consen  876 KMTPPIKDLLPRLTPILKNR---------------------HEKVQENCIDLVGTIAD  912 (1172)
T ss_pred             ccCCChhhhcccchHhhhhh---------------------HHHHHHHHHHHHHHHHh
Confidence            1111 467889999999864                     78999999999999986

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.56  E-value=0.026  Score=60.04  Aligned_cols=46  Identities=17%  Similarity=0.479  Sum_probs=36.1

Q ss_pred             cccccCccccCC--C---ceec--CCCCcccHhhHHHHHhc-CCCCCCCccccc
Q 036338           13 FFRCPISLDVMK--S---PVSL--CTGVTYDRASIQRWLDS-GNNTCPATMQVL   58 (408)
Q Consensus        13 ~~~Cpi~~~~~~--d---Pv~~--~cgh~f~r~cI~~~~~~-~~~~CP~~~~~l   58 (408)
                      .--|+||--++.  |   |-..  .|.|.|--+|+.+|+.. ++.+||.||..+
T Consensus      1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219        1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred             cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence            335999998876  2   5544  38899999999999987 456899999654

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.54  E-value=4.3  Score=43.09  Aligned_cols=147  Identities=14%  Similarity=0.147  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHhcCC-----hh---HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhh----cCcchhhHHHHHHH
Q 036338           99 QDEVKDIIRVAISKN-----ED---FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILS----NVNDVNMLKQVIRV  166 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~-----~~---~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~----s~~~~~~~e~A~~~  166 (408)
                      +..+|.|++.|...+     .+   ...|-.+|..++.-   .++      ..+|.++.+++    +++ -+-.+.|+.+
T Consensus       318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D------~Iv~~Vl~Fiee~i~~pd-wr~reaavmA  387 (859)
T KOG1241|consen  318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGD------DIVPHVLPFIEENIQNPD-WRNREAAVMA  387 (859)
T ss_pred             hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcc------cchhhhHHHHHHhcCCcc-hhhhhHHHHH
Confidence            456788888876521     11   33344445444321   111      45555566654    444 2333888888


Q ss_pred             HHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc-hhhHHhhhcChHHHHHHhcccC
Q 036338          167 LDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD-SKVKIAERDGLLAETVKSLSLD  245 (408)
Q Consensus       167 L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~  245 (408)
                      ++.+..  +.+.....-+   -.+++|.++.++... +.-+|..++|.|+.++..-. .+.--..-.+.+..|+.-|.+ 
T Consensus       388 FGSIl~--gp~~~~Lt~i---V~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-  460 (859)
T KOG1241|consen  388 FGSILE--GPEPDKLTPI---VIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-  460 (859)
T ss_pred             HHhhhc--CCchhhhhHH---HhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-
Confidence            887764  3322212233   368999999999987 89999999999999987532 111111113456777777765 


Q ss_pred             CCHHHHHHHHHHHHHhcc
Q 036338          246 SDRRLIEASLSCLITISS  263 (408)
Q Consensus       246 ~~~~~~~~A~~aL~~Ls~  263 (408)
                       .|.+..++.||+.+|+.
T Consensus       461 -ePrva~N~CWAf~~Lae  477 (859)
T KOG1241|consen  461 -EPRVASNVCWAFISLAE  477 (859)
T ss_pred             -CchHHHHHHHHHHHHHH
Confidence             68999999999999973

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=93.50  E-value=0.53  Score=42.09  Aligned_cols=118  Identities=9%  Similarity=0.034  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHhhcCcchhhHHhh---------------hcChHHHHHHhcccC-----CCHHHHHHHHHHHHHhccCcch
Q 036338          208 RIESLRLLEFIAGDADSKVKIAE---------------RDGLLAETVKSLSLD-----SDRRLIEASLSCLITISSSKRA  267 (408)
Q Consensus       208 ~~~Aa~~L~~La~~~~~~~~i~~---------------~~g~i~~Lv~lL~~~-----~~~~~~~~A~~aL~~Ls~~~~n  267 (408)
                      -..++.+|.||+..++.+..+..               ....+..|++++..|     ....-....+..|.|++..++.
T Consensus        12 adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~g   91 (192)
T PF04063_consen   12 ADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEG   91 (192)
T ss_pred             HHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHH
Confidence            34556666666666655553321               133678888877652     2345677889999999999999


Q ss_pred             HHHHHh--cCc--HHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhc--CchH
Q 036338          268 KTKLIN--HKL--ITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDA--ALLN  341 (408)
Q Consensus       268 ~~~~~~--~G~--i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~--g~i~  341 (408)
                      |..+.+  .+.  |..|+-.+.+.                     +..=+.-+++++.|+|-+.+....+....  +.+|
T Consensus        92 R~~~l~~~~~~~~l~kLl~ft~~~---------------------s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp  150 (192)
T PF04063_consen   92 RQFFLDPQRYDGPLQKLLPFTEHK---------------------SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILP  150 (192)
T ss_pred             HHHHhCchhhhhHHHHHHHHhccC---------------------cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHH
Confidence            999994  344  55666666542                     56667889999999999888888887642  4455


Q ss_pred             HHHHH
Q 036338          342 GVVQK  346 (408)
Q Consensus       342 ~lv~~  346 (408)
                      .|+--
T Consensus       151 ~LLlP  155 (192)
T PF04063_consen  151 YLLLP  155 (192)
T ss_pred             HHHhh
Confidence            44443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.49  E-value=0.58  Score=42.38  Aligned_cols=148  Identities=19%  Similarity=0.280  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc----chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccH
Q 036338          117 SENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN----DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCL  192 (408)
Q Consensus       117 ~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~----~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i  192 (408)
                      ..|+.-|.-+++ +++.|..+.++ ..--.|-.+|...+    -+-..-.++.+++.|..  +++..+.+.+.  ...++
T Consensus       118 cnaL~lLQclaS-hPetk~~Fl~A-hiplflypfLntss~~~~fEyLRltsLGVIgaLvk--Ndsq~vi~fLl--tTeiv  191 (315)
T COG5209         118 CNALNLLQCLAS-HPETKKVFLDA-HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVK--NDSQYVIKFLL--TTEIV  191 (315)
T ss_pred             HHHHHHHHHHhc-Ccchheeeeec-ccceeeHhhhhccccCCccceeeehHHHHHHHHHh--CCCHHHHHHHH--hhhHH
Confidence            356666666666 58899888887 65444555554332    11122568888888887  55554455665  78999


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcC-------hHHHHHHhc-ccCCCHHHHHHHHHHHHHhccC
Q 036338          193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDG-------LLAETVKSL-SLDSDRRLIEASLSCLITISSS  264 (408)
Q Consensus       193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g-------~i~~Lv~lL-~~~~~~~~~~~A~~aL~~Ls~~  264 (408)
                      |.+++++..| +.-.|.-|+.++..+-.++..-..|..+-.       ++..++.-+ ..+ +.+..+.+.++-..||..
T Consensus       192 PLcLrIme~g-SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~-~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         192 PLCLRIMELG-SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLG-STRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             HHHHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHheeecCC
Confidence            9999999999 999999999999988888766655543222       222233322 234 678999999999999998


Q ss_pred             cchHHHHH
Q 036338          265 KRAKTKLI  272 (408)
Q Consensus       265 ~~n~~~~~  272 (408)
                      +..|..+-
T Consensus       270 p~aR~lL~  277 (315)
T COG5209         270 PHARALLS  277 (315)
T ss_pred             HhHHHHHh
Confidence            87776554

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=93.45  E-value=9  Score=38.13  Aligned_cols=99  Identities=14%  Similarity=0.207  Sum_probs=77.2

Q ss_pred             cccHHHHHHHHhcCC--ChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc-cC--CCHHHHHHHHHHHHHhcc
Q 036338          189 QDCLNSLLLVLKQQE--SVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS-LD--SDRRLIEASLSCLITISS  263 (408)
Q Consensus       189 ~g~i~~Lv~lL~~~~--~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~-~~--~~~~~~~~A~~aL~~Ls~  263 (408)
                      ...+..|-.++++..  ...+-..|+.++..+-.++.....+....|.++.+++.+. .+  .+.++...--.+|..||.
T Consensus       105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL  184 (379)
T PF06025_consen  105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL  184 (379)
T ss_pred             hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence            455666666666531  2456677888888888777666666555999999999888 43  356888888889999999


Q ss_pred             CcchHHHHHhcCcHHHHHHHhccC
Q 036338          264 SKRAKTKLINHKLITELGKLITDG  287 (408)
Q Consensus       264 ~~~n~~~~~~~G~i~~Lv~lL~~~  287 (408)
                      +....+.+.+.+.++.+++.+.++
T Consensus       185 N~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  185 NNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             CHHHHHHHHhcChHHHHHHHhCCH
Confidence            999999999999999999999874

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.44  E-value=1.1  Score=44.96  Aligned_cols=133  Identities=17%  Similarity=0.224  Sum_probs=95.7

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHhhcCcc----hhhHHhhhcChHHHHHHhcccCC------CHHHHHHHHHHHHHhccC
Q 036338          195 LLLVLKQQESVDSRIESLRLLEFIAGDAD----SKVKIAERDGLLAETVKSLSLDS------DRRLIEASLSCLITISSS  264 (408)
Q Consensus       195 Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~----~~~~i~~~~g~i~~Lv~lL~~~~------~~~~~~~A~~aL~~Ls~~  264 (408)
                      +..++... +.+.|-.|...+..+.+++|    +|..+.+ .=+++.+-++|.++.      +.--+.-+...|..+|+.
T Consensus        16 ~~~L~~~k-~D~e~fAaLllVTK~vK~~Di~a~~kk~vfe-AVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   16 CLKLLKGK-RDEERFAALLLVTKFVKNDDIVALNKKLVFE-AVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             HHHHhccc-ChHHHHHHHHHHHHHhcccchhhhhhhhHHH-HhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            44555555 77777777777788887653    6777887 556789999997541      234566778888899998


Q ss_pred             cc--hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHH
Q 036338          265 KR--AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNG  342 (408)
Q Consensus       265 ~~--n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~  342 (408)
                      ++  ....|++  .||.|++.++-.           .+.+-   .++..+.+.+-..|...+..+.+.+.+... |+++.
T Consensus        94 pElAsh~~~v~--~IP~llev~~~~-----------~d~d~---e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~-G~~~~  156 (698)
T KOG2611|consen   94 PELASHEEMVS--RIPLLLEVMSKG-----------IDTDY---EDNLIMLEDCYECLYLVATAEAGLMTLIAS-GGLRV  156 (698)
T ss_pred             hhhccCHHHHH--hhhHHHHHHHhc-----------CCCch---hhhHHHHHHHHHHHHHHhcCCchhHHHHhc-CchHH
Confidence            86  4555654  589999999742           00000   113458899999999999999999999885 89998


Q ss_pred             HHHH
Q 036338          343 VVQK  346 (408)
Q Consensus       343 lv~~  346 (408)
                      +-++
T Consensus       157 ~~Q~  160 (698)
T KOG2611|consen  157 IAQM  160 (698)
T ss_pred             HHHH
Confidence            8763

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=93.20  E-value=6.2  Score=38.23  Aligned_cols=78  Identities=22%  Similarity=0.265  Sum_probs=59.4

Q ss_pred             CcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcch
Q 036338          188 DQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRA  267 (408)
Q Consensus       188 ~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n  267 (408)
                      +.-.++.+...+... +..+|..|+.+|..+....         ..+.+.+...+.++ +..++..++.+|..+-...  
T Consensus       178 ~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~vr~~~~~~l~~~~~~~--  244 (335)
T COG1413         178 DPEAIPLLIELLEDE-DADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLEVRKAALLALGEIGDEE--  244 (335)
T ss_pred             ChhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHHHHHHHHHHhcccCcch--
Confidence            456678888888888 8889999999999887554         24568888888887 8889998888887765543  


Q ss_pred             HHHHHhcCcHHHHHHHhcc
Q 036338          268 KTKLINHKLITELGKLITD  286 (408)
Q Consensus       268 ~~~~~~~G~i~~Lv~lL~~  286 (408)
                              .++.++..+.+
T Consensus       245 --------~~~~l~~~l~~  255 (335)
T COG1413         245 --------AVDALAKALED  255 (335)
T ss_pred             --------hHHHHHHHHhc
Confidence                    45666666654

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=93.17  E-value=1.6  Score=37.71  Aligned_cols=144  Identities=14%  Similarity=0.136  Sum_probs=83.5

Q ss_pred             HHHHHHhc-C-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHH
Q 036338          104 DIIRVAIS-K-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHL  180 (408)
Q Consensus       104 ~Lv~~L~s-~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~  180 (408)
                      .++..|-. . ..+ |..++-.+..+.   +..++...+.  .-..+-.++.... ....-.++.+|..|-.  ...+-.
T Consensus         7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~--~~~~i~~~~~~~~-~d~~i~~~~~l~~lfp--~~~dv~   78 (157)
T PF11701_consen    7 TLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK--ISDFIESLLDEGE-MDSLIIAFSALTALFP--GPPDVG   78 (157)
T ss_dssp             HHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHCCHH-CCHHHHHHHHHHHHCT--TTHHHH
T ss_pred             HHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH--HHHHHHHHHcccc-chhHHHHHHHHHHHhC--CCHHHH
Confidence            34555443 2 223 556665555553   2333333321  1122333333333 1123566666666654  333333


Q ss_pred             HHHHhccCcccHHHHHHHHh--cCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHH-HHHHHHHH
Q 036338          181 MNLILKRDQDCLNSLLLVLK--QQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRR-LIEASLSC  257 (408)
Q Consensus       181 ~~~i~~~~~g~i~~Lv~lL~--~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~-~~~~A~~a  257 (408)
                      ..++.  ..|.++.++.+..  +. +...+..++.+|..-|.+...|..|.. . +++-|-++++.+.+.. .+..|+-.
T Consensus        79 ~~l~~--~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~d~~~r~~I~~-~-~~~~L~~~~~~~~~~~~ir~~A~v~  153 (157)
T PF11701_consen   79 SELFL--SEGFLESLLPLASRKSK-DRKVQKAALELLSAACIDKSCRTFISK-N-YVSWLKELYKNSKDDSEIRVLAAVG  153 (157)
T ss_dssp             HHHCC--TTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTSHHHHHCCHH-H-CHHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred             HHHHh--hhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHccHHHHHHHHH-H-HHHHHHHHHccccchHHHHHHHHHH
Confidence            56666  8899999999998  55 777777777777777777777777765 4 5899999997653555 66767666


Q ss_pred             HHH
Q 036338          258 LIT  260 (408)
Q Consensus       258 L~~  260 (408)
                      |..
T Consensus       154 L~K  156 (157)
T PF11701_consen  154 LCK  156 (157)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=93.06  E-value=0.063  Score=50.79  Aligned_cols=48  Identities=17%  Similarity=0.261  Sum_probs=34.9

Q ss_pred             cccCccccCCC--cee--cCCCCcccHhhHHHHHhcCCCCCCCcccccCCCC
Q 036338           15 RCPISLDVMKS--PVS--LCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE   62 (408)
Q Consensus        15 ~Cpi~~~~~~d--Pv~--~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~   62 (408)
                      .||+|.+.|.-  --.  -+||+..|+-|-...-++-+..||.||..+....
T Consensus        16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            49999998854  222  2699999999965544444678999998776543

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.01  E-value=8.9  Score=41.05  Aligned_cols=170  Identities=13%  Similarity=0.155  Sum_probs=106.2

Q ss_pred             Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-----chhhHHHHHHHHHHhcccccchHHHHHHHhc
Q 036338          113 NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-----DVNMLKQVIRVLDLILNKIEDQQHLMNLILK  186 (408)
Q Consensus       113 ~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-----~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~  186 (408)
                      ++. |.+.++.|+-+-.+++...+.+-+.      |.++....+     .--++.+++.++..+-    .+..++. +  
T Consensus       247 dPFLQi~iLrlLriLGq~d~daSd~M~Di------LaqvatntdsskN~GnAILYE~V~TI~~I~----~~~~Lrv-l--  313 (866)
T KOG1062|consen  247 DPFLQIRILRLLRILGQNDADASDLMNDI------LAQVATNTDSSKNAGNAILYECVRTIMDIR----SNSGLRV-L--  313 (866)
T ss_pred             chHHHHHHHHHHHHhcCCCccHHHHHHHH------HHHHHhcccccccchhHHHHHHHHHHHhcc----CCchHHH-H--
Confidence            344 7778888887777766666666554      455554433     1123455555554442    1221121 1  


Q ss_pred             cCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc
Q 036338          187 RDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR  266 (408)
Q Consensus       187 ~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~  266 (408)
                          ++..|-++|.+. +...|--|...|..+...+++...=   +  =..+++.|++. |...++.|+..++.|... .
T Consensus       314 ----ainiLgkFL~n~-d~NirYvaLn~L~r~V~~d~~avqr---H--r~tIleCL~Dp-D~SIkrralELs~~lvn~-~  381 (866)
T KOG1062|consen  314 ----AINILGKFLLNR-DNNIRYVALNMLLRVVQQDPTAVQR---H--RSTILECLKDP-DVSIKRRALELSYALVNE-S  381 (866)
T ss_pred             ----HHHHHHHHhcCC-ccceeeeehhhHHhhhcCCcHHHHH---H--HHHHHHHhcCC-cHHHHHHHHHHHHHHhcc-c
Confidence                255556666666 6677777777777766555433322   2  25678899987 889999999999988765 3


Q ss_pred             hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC--CHHHHHHH
Q 036338          267 AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST--TKQGRMEI  333 (408)
Q Consensus       267 n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~--~~~~~~~~  333 (408)
                      |...|+     .-|++.|.+.                     +...+...+.-+..++.  .|++|.-|
T Consensus       382 Nv~~mv-----~eLl~fL~~~---------------------d~~~k~~~as~I~~laEkfaP~k~W~i  424 (866)
T KOG1062|consen  382 NVRVMV-----KELLEFLESS---------------------DEDFKADIASKIAELAEKFAPDKRWHI  424 (866)
T ss_pred             cHHHHH-----HHHHHHHHhc---------------------cHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence            555555     4588888753                     77888877777777775  46666644

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.99  E-value=0.047  Score=54.16  Aligned_cols=50  Identities=16%  Similarity=0.306  Sum_probs=37.4

Q ss_pred             CCcccccCccccCC-----------------CceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           11 PSFFRCPISLDVMK-----------------SPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~-----------------dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      ...--|+||.....                 +=+.+||-|.|-+.|+++|.+.-+-.||.||.++.+
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            34456999975321                 123458999999999999998555679999998753

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.97  E-value=0.34  Score=39.62  Aligned_cols=73  Identities=10%  Similarity=0.106  Sum_probs=55.3

Q ss_pred             cccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338          189 QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS  263 (408)
Q Consensus       189 ~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~  263 (408)
                      .-.+..|+++|....+..+..-|+.-|+.++... ..|..+.. .|+-..++.++.++ +++++..|+.|+-.|..
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNHE-DPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            3457889999954326677778888999888764 55555544 89999999999997 99999999999887643

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=92.90  E-value=0.38  Score=37.98  Aligned_cols=68  Identities=16%  Similarity=0.094  Sum_probs=50.9

Q ss_pred             ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 036338          190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI  261 (408)
Q Consensus       190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L  261 (408)
                      -.+++++..+... +..+|..|+.+|.+++........- .-..+++.|.+++.+. ++.++..| ..|-+|
T Consensus        27 ~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~-d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   27 EILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADP-DENVRSAA-ELLDRL   94 (97)
T ss_pred             HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC-chhHHHHH-HHHHHH
Confidence            5689999999998 9999999999999999764332221 2256889999999886 77766554 555544

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.86  E-value=3.4  Score=42.30  Aligned_cols=135  Identities=10%  Similarity=0.152  Sum_probs=89.2

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCC---CHHHHHHHHHHHHHhccCcchHH
Q 036338          193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDS---DRRLIEASLSCLITISSSKRAKT  269 (408)
Q Consensus       193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~~A~~aL~~Ls~~~~n~~  269 (408)
                      ..+.+++.+| +...|..|..-|..|+.+......+.. ..++..|.+++.++.   +.......++|+..|-.+.-...
T Consensus        86 ~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   86 KRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIR-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHh-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            4566788899 888888899999999999887777766 567899999999873   24566667777766654433333


Q ss_pred             HHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHH
Q 036338          270 KLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKML  348 (408)
Q Consensus       270 ~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~  348 (408)
                      ..+....|.....+..-.                   -.+..+...|+..|.++..+.....+.+.+.--+..|+.+|.
T Consensus       164 ~~~~~~fV~~~a~~V~~~-------------------~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq  223 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAK-------------------REDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQ  223 (713)
T ss_pred             eecccHHHHHHHHHHhhh-------------------hhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHH
Confidence            333333333444443211                   235677899999999998765544444443355566666443

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=92.79  E-value=3  Score=44.80  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=74.2

Q ss_pred             HHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc
Q 036338          144 VVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD  223 (408)
Q Consensus       144 i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~  223 (408)
                      +..+.+=|++++ +..+-.|+.+|..+-    +    .+++    ..+++++.+++.++ +..+|..|+-+|.++=.-+ 
T Consensus        94 vNti~kDl~d~N-~~iR~~AlR~ls~l~----~----~el~----~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld-  158 (757)
T COG5096          94 VNTIQKDLQDPN-EEIRGFALRTLSLLR----V----KELL----GNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD-  158 (757)
T ss_pred             HHHHHhhccCCC-HHHHHHHHHHHHhcC----h----HHHH----HHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC-
Confidence            344444444444 333477777777652    2    2333    35689999999999 9999999999999886433 


Q ss_pred             hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccC
Q 036338          224 SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSS  264 (408)
Q Consensus       224 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~  264 (408)
                       +..+.+ .|.+..+..++.+. +|.+..+|+.+|..+...
T Consensus       159 -~~l~~~-~g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         159 -KDLYHE-LGLIDILKELVADS-DPIVIANALASLAEIDPE  196 (757)
T ss_pred             -Hhhhhc-ccHHHHHHHHhhCC-CchHHHHHHHHHHHhchh
Confidence             233334 77889899999886 999999999999998664

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=92.78  E-value=1.5  Score=41.01  Aligned_cols=98  Identities=13%  Similarity=0.097  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHhhcC-cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhc-cCcchHHHHHhcCcHHHHHHHh
Q 036338          207 SRIESLRLLEFIAGD-ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITIS-SSKRAKTKLINHKLITELGKLI  284 (408)
Q Consensus       207 ~~~~Aa~~L~~La~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls-~~~~n~~~~~~~G~i~~Lv~lL  284 (408)
                      ....|..+|.-++.. +..+..... ...+..|+++|....++.++.+++.+|..+. .++.|...+-+.+|+..++.++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            456678888877764 556666665 8899999999965447889999999988754 5677888888999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh
Q 036338          285 TDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILS  324 (408)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~  324 (408)
                      ++.                   ..+..++-+.+..|.-..
T Consensus       186 k~~-------------------~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  186 KSK-------------------STDRELRLKCIEFLYFYL  206 (257)
T ss_pred             ccc-------------------cccHHHhHHHHHHHHHHH
Confidence            875                   346666666666665544

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.58  E-value=16  Score=38.75  Aligned_cols=91  Identities=12%  Similarity=0.153  Sum_probs=65.0

Q ss_pred             cccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchH
Q 036338          189 QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAK  268 (408)
Q Consensus       189 ~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~  268 (408)
                      .|.+..|++-..+. +..+|-+.+.+|..+.........-.- .+....|..-|.+. .+.++..|+.||..+=..+.+-
T Consensus        84 ~~~f~hlLRg~Esk-dk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~de  160 (892)
T KOG2025|consen   84 AGTFYHLLRGTESK-DKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDE  160 (892)
T ss_pred             HHHHHHHHhcccCc-chhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCC
Confidence            36677777777777 889999999999998864333333333 46777787777775 7889999999999986432210


Q ss_pred             HHHHhcCcHHHHHHHhcc
Q 036338          269 TKLINHKLITELGKLITD  286 (408)
Q Consensus       269 ~~~~~~G~i~~Lv~lL~~  286 (408)
                          +..++..++.+++.
T Consensus       161 ----e~~v~n~l~~liqn  174 (892)
T KOG2025|consen  161 ----ECPVVNLLKDLIQN  174 (892)
T ss_pred             ----cccHHHHHHHHHhc
Confidence                23466788899986

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=92.55  E-value=13  Score=37.48  Aligned_cols=110  Identities=14%  Similarity=0.166  Sum_probs=80.2

Q ss_pred             cHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-cch-------------hhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          191 CLNSLLLVLKQQESVDSRIESLRLLEFIAGD-ADS-------------KVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       191 ~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~-~~~-------------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      .+..|+.+|.+   .+....|+..+.-|..+ ++.             |..+..  -.+|.|++-.+.. +...+..-+.
T Consensus       272 ~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~-~~~~k~~yL~  345 (415)
T PF12460_consen  272 LLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEA-DDEIKSNYLT  345 (415)
T ss_pred             HHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhc-ChhhHHHHHH
Confidence            36667777754   46778899999888766 322             455554  3688888888875 5568888999


Q ss_pred             HHHHhccCcchHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCH
Q 036338          257 CLITISSSKRAKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTK  327 (408)
Q Consensus       257 aL~~Ls~~~~n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~  327 (408)
                      ||..+..+-.....+-+ ...+|.|++-|+.+                     +..++..++.+|..+....
T Consensus       346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~---------------------~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP---------------------DADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC---------------------CHHHHHHHHHHHHHHHHcC
Confidence            99999886554333334 56889999999754                     6779999999999987643

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=92.51  E-value=2.9  Score=40.03  Aligned_cols=161  Identities=14%  Similarity=0.166  Sum_probs=104.6

Q ss_pred             HHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhh--
Q 036338          149 EILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKV--  226 (408)
Q Consensus       149 ~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~--  226 (408)
                      ..+++.+ ..+.+.|+..|+.++.  -+.+.        ....++.+...+..+ +.+++..|..+|..+........  
T Consensus        34 P~v~~~~-~~vR~~al~cLGl~~L--ld~~~--------a~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~  101 (298)
T PF12719_consen   34 PAVQSSD-PAVRELALKCLGLCCL--LDKEL--------AKEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIFD  101 (298)
T ss_pred             HHhcCCC-HHHHHHHHHHHHHHHH--hChHH--------HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhcc
Confidence            4455555 3344999999998876  44331        123467788888888 99999999999998875432111  


Q ss_pred             -------HHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCC
Q 036338          227 -------KIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGN  299 (408)
Q Consensus       227 -------~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~  299 (408)
                             .... ...+..+.+.|.+. +++++..|+..+..|-..+....   ...++..|+-+-.++.           
T Consensus       102 ~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~-----------  165 (298)
T PF12719_consen  102 SESDNDESVDS-KSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPS-----------  165 (298)
T ss_pred             chhccCccchH-hHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcc-----------
Confidence                   1112 45778888888887 88999999999999876554222   2445666776666651           


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhhcCchHHHHH
Q 036338          300 GNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQDAALLNGVVQ  345 (408)
Q Consensus       300 ~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g~i~~lv~  345 (408)
                            ...+..++..-...+-..+. ++++++.+..  ..+|.+-.
T Consensus       166 ------t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~--~f~~~l~~  204 (298)
T PF12719_consen  166 ------TEDNQRLRQCLSVFFPVYASSSPENQERLAE--AFLPTLRT  204 (298)
T ss_pred             ------cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHH
Confidence                  12244666666666666665 4666665543  45565444

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=91.95  E-value=5.6  Score=36.75  Aligned_cols=108  Identities=17%  Similarity=0.182  Sum_probs=81.6

Q ss_pred             HHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc----cCCCHHHHHHHHHHHHHhccCcc--hHHHHHhcCcHHHHHH
Q 036338          209 IESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS----LDSDRRLIEASLSCLITISSSKR--AKTKLINHKLITELGK  282 (408)
Q Consensus       209 ~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~----~~~~~~~~~~A~~aL~~Ls~~~~--n~~~~~~~G~i~~Lv~  282 (408)
                      .+|..+|.-++++++.|..+.. +-+=-.|-.+|.    +....-.+-.+++.+..|..+++  ....+...++||..+.
T Consensus        97 cnaL~LlQcvASHpdTr~~FL~-A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   97 CNALALLQCVASHPDTRRAFLR-AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHhcCcchHHHHHH-ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            5677777788999999988876 333223333443    33345688899999999998665  5566668999999999


Q ss_pred             HhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcC
Q 036338          283 LITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAA  338 (408)
Q Consensus       283 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g  338 (408)
                      .+...                     +..-+..|..++..+-.++.|-..++....
T Consensus       176 ime~G---------------------SelSKtvA~fIlqKIlldD~GL~YiCqt~e  210 (293)
T KOG3036|consen  176 IMESG---------------------SELSKTVATFILQKILLDDVGLYYICQTAE  210 (293)
T ss_pred             HHhcc---------------------cHHHHHHHHHHHHHHhhccccHHHHHHhHH
Confidence            99753                     678888999999999888888888876543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=91.87  E-value=0.31  Score=29.49  Aligned_cols=28  Identities=32%  Similarity=0.302  Sum_probs=25.0

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 036338          192 LNSLLLVLKQQESVDSRIESLRLLEFIAG  220 (408)
Q Consensus       192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~  220 (408)
                      +|.+++++++. +.++|..|+.+|..++.
T Consensus         2 lp~l~~~l~D~-~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDP-SPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence            78899999999 99999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.63  E-value=3.6  Score=42.19  Aligned_cols=196  Identities=14%  Similarity=0.145  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHH----HHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhccc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLT----KIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNK  173 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~----~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~  173 (408)
                      ++-..-|...|+..+.+ +.-+=.    -|+.+..+ +.    ..+.+..++.++.=+.++. +..+..|+.-+..+.. 
T Consensus       207 ~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~-P~----s~d~~~~i~vlv~~l~ss~-~~iq~~al~Wi~efV~-  279 (675)
T KOG0212|consen  207 PSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS-PS----SMDYDDMINVLVPHLQSSE-PEIQLKALTWIQEFVK-  279 (675)
T ss_pred             hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-cc----ccCcccchhhccccccCCc-HHHHHHHHHHHHHHhc-
Confidence            44455666677776666 422222    22222222 22    1134466777888777766 2233777766655543 


Q ss_pred             ccchHHHHHHHhccCcccHHHHHHHHhcCCCh-HHHHHHHHHH---HHhhcCcchhhHHhhhcChHHHHHHhcccCCCHH
Q 036338          174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQESV-DSRIESLRLL---EFIAGDADSKVKIAERDGLLAETVKSLSLDSDRR  249 (408)
Q Consensus       174 ~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~-~~~~~Aa~~L---~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~  249 (408)
                      +..    +..+. .-+|++..++..+.+. .. ..++.+..+-   ..+...+..+..+-- ...+..|.+.+.++ ..+
T Consensus       280 i~g----~~~l~-~~s~il~~iLpc~s~~-e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~-~~ii~vl~~~l~~~-~~~  351 (675)
T KOG0212|consen  280 IPG----RDLLL-YLSGILTAILPCLSDT-EEMSIKEYAQMVNGLLLKLVSSERLKEEIDY-GSIIEVLTKYLSDD-REE  351 (675)
T ss_pred             CCC----cchhh-hhhhhhhhcccCCCCC-ccccHHHHHHHHHHHHHHHHhhhhhccccch-HHHHHHHHHHhhcc-hHH
Confidence            112    22222 1456666666666655 33 3555554433   233333333333432 34788888889886 788


Q ss_pred             HHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHH
Q 036338          250 LIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQG  329 (408)
Q Consensus       250 ~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~  329 (408)
                      .+-+++.-+.-|-....+.-........+.|+.-|++.                     +..++..++..|.++|.+++.
T Consensus       352 tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~---------------------sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  352 TRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDR---------------------SDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCc---------------------hhHHHHHHHHHHHHHhcCccc
Confidence            99999998888877777776666788999999999854                     889999999999999987654


Q ss_pred             H
Q 036338          330 R  330 (408)
Q Consensus       330 ~  330 (408)
                      .
T Consensus       411 ~  411 (675)
T KOG0212|consen  411 P  411 (675)
T ss_pred             c
Confidence            3

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=91.52  E-value=6.2  Score=34.64  Aligned_cols=136  Identities=14%  Similarity=0.129  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHH
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSL  195 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~L  195 (408)
                      |..++..+..++...+..    ++  ..+|.+...|.+++ +.+...|+.+|..|..  .+.      +. -+...+..+
T Consensus         5 R~n~i~~l~DL~~r~~~~----ve--~~~~~l~~~L~D~~-~~VR~~al~~Ls~Li~--~d~------ik-~k~~l~~~~   68 (178)
T PF12717_consen    5 RNNAIIALGDLCIRYPNL----VE--PYLPNLYKCLRDED-PLVRKTALLVLSHLIL--EDM------IK-VKGQLFSRI   68 (178)
T ss_pred             HHHHHHHHHHHHHhCcHH----HH--hHHHHHHHHHCCCC-HHHHHHHHHHHHHHHH--cCc------ee-ehhhhhHHH
Confidence            778888999888776532    32  45778899998877 3344999999999875  222      21 022334777


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccC--------CCHHHHHHHHHHHHHhccCcch
Q 036338          196 LLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLD--------SDRRLIEASLSCLITISSSKRA  267 (408)
Q Consensus       196 v~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~--------~~~~~~~~A~~aL~~Ls~~~~n  267 (408)
                      +.+|... +.++|..|...+..+..... ...+..   .++.++..|...        .+.+-+..-...|...-..+..
T Consensus        69 l~~l~D~-~~~Ir~~A~~~~~e~~~~~~-~~~i~~---~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~  143 (178)
T PF12717_consen   69 LKLLVDE-NPEIRSLARSFFSELLKKRN-PNIIYN---NFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQ  143 (178)
T ss_pred             HHHHcCC-CHHHHHHHHHHHHHHHHhcc-chHHHH---HHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHH
Confidence            8888887 99999999999999987632 222322   355566655531        2445555666666655554444


Q ss_pred             HHHHH
Q 036338          268 KTKLI  272 (408)
Q Consensus       268 ~~~~~  272 (408)
                      +..++
T Consensus       144 ~~~l~  148 (178)
T PF12717_consen  144 KESLV  148 (178)
T ss_pred             HHHHH
Confidence            44433

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.41  E-value=0.047  Score=50.68  Aligned_cols=39  Identities=28%  Similarity=0.381  Sum_probs=31.6

Q ss_pred             cccccCccccCCCceecCCCCcc-cHhhHHHHHhcCC--CCCCCccccc
Q 036338           13 FFRCPISLDVMKSPVSLCTGVTY-DRASIQRWLDSGN--NTCPATMQVL   58 (408)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~cgh~f-~r~cI~~~~~~~~--~~CP~~~~~l   58 (408)
                      +..|.||.+.-+|=|.++|||.. |-+|       |.  ..||+||+.+
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqyi  341 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQYI  341 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHHH
Confidence            78899999999999999999976 4444       32  3699999754

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=91.21  E-value=3.2  Score=36.45  Aligned_cols=113  Identities=19%  Similarity=0.284  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHhhhCh-hhhhhhhhcCChHHHHHHHhhcCc--------chhhHHHHHHHHHH
Q 036338           99 QDEVKDIIRVAISKNEDFSENLTKIVAFAKESD-ENKTFLAKFDGLVVMLVEILSNVN--------DVNMLKQVIRVLDL  169 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~~~~Al~~L~~la~~~~-~~r~~i~~~~G~i~~Lv~lL~s~~--------~~~~~e~A~~~L~~  169 (408)
                      ......+++.+.+.... .+.+..|+.....++ .--..+.+. ||+..|+.+|..-.        +......++.+|..
T Consensus        65 ~~~p~~~i~~L~~~~~~-~~~L~~L~v~Lrt~~~~Wv~~Fl~~-~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka  142 (187)
T PF06371_consen   65 KSSPEWYIKKLKSRPST-SKILKSLRVSLRTNPISWVQEFLEL-GGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA  142 (187)
T ss_dssp             CHHHHHHHHHHTTT--H-HHHHHHHHHHHHHS-HHHHHHH-HH-HHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHccCcc-HHHHHHHHHHhccCCchHHHHhccC-CCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence            44566788888776432 244555554444433 334456678 99999999996532        22345778888888


Q ss_pred             hcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 036338          170 ILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIA  219 (408)
Q Consensus       170 L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La  219 (408)
                      |..  .... ...++.  ..+++..|+..|.+. +..+|..+..+|..+|
T Consensus       143 l~n--~~~G-~~~v~~--~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  143 LMN--TKYG-LEAVLS--HPDSVNLIALSLDSP-NIKTRKLALEILAALC  186 (187)
T ss_dssp             HTS--SHHH-HHHHHC--SSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred             HHc--cHHH-HHHHHc--CcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence            875  3433 355554  789999999999998 9999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=91.14  E-value=0.083  Score=55.20  Aligned_cols=66  Identities=15%  Similarity=0.362  Sum_probs=46.6

Q ss_pred             CCcccccCccccCCCceecCCCCcccHhhHHHHHh--cCCCCCCCcccccCCCCCcccHHHHHHHHHH
Q 036338           11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLD--SGNNTCPATMQVLQSKEFVPNRTLQRLIQIW   76 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~--~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~   76 (408)
                      ..++.||||.....+|+.+.|-|.||+.|+-..|.  .+...||.|+...............++++++
T Consensus        19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~   86 (684)
T KOG4362|consen   19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES   86 (684)
T ss_pred             hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence            44567999999999999999999999999988543  3445699998544333333333444445533

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=91.04  E-value=4.9  Score=41.76  Aligned_cols=92  Identities=17%  Similarity=0.253  Sum_probs=59.4

Q ss_pred             ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcch---hhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc
Q 036338          190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADS---KVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR  266 (408)
Q Consensus       190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~---~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~  266 (408)
                      -.+..++.+|++. ++.+|++|+.+...|+..-.+   -+.+.. .|.|  |.+-|... .+++.-..+.|++.+-+...
T Consensus       604 ~ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~k-lg~i--LyE~lge~-ypEvLgsil~Ai~~I~sv~~  678 (975)
T COG5181         604 MIVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAK-LGNI--LYENLGED-YPEVLGSILKAICSIYSVHR  678 (975)
T ss_pred             HHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHH-HhHH--HHHhcCcc-cHHHHHHHHHHHHHHhhhhc
Confidence            4467778899999 999999999999888753221   122222 3433  66667665 88998888888888765433


Q ss_pred             hHHHHH-hcCcHHHHHHHhcc
Q 036338          267 AKTKLI-NHKLITELGKLITD  286 (408)
Q Consensus       267 n~~~~~-~~G~i~~Lv~lL~~  286 (408)
                      -+..-- -.|++|.|.-.|++
T Consensus       679 ~~~mqpPi~~ilP~ltPILrn  699 (975)
T COG5181         679 FRSMQPPISGILPSLTPILRN  699 (975)
T ss_pred             ccccCCchhhccccccHhhhh
Confidence            221111 34566666666664

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.01  E-value=25  Score=37.78  Aligned_cols=71  Identities=17%  Similarity=0.109  Sum_probs=48.7

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhh--cChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcch
Q 036338          193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAER--DGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRA  267 (408)
Q Consensus       193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~--~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n  267 (408)
                      -.++++|.++ +.+..+....+|..++.+.|...-++..  ...|..+..+..   +..++..|+.+|..+-.+.+|
T Consensus       255 LrlLriLGq~-d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~---~~~LrvlainiLgkFL~n~d~  327 (866)
T KOG1062|consen  255 LRLLRILGQN-DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRS---NSGLRVLAINILGKFLLNRDN  327 (866)
T ss_pred             HHHHHHhcCC-CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccC---CchHHHHHHHHHHHHhcCCcc
Confidence            3456777888 8999999999999998876654444430  113444444443   457999999999987776653

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=90.78  E-value=11  Score=35.11  Aligned_cols=196  Identities=11%  Similarity=0.093  Sum_probs=120.3

Q ss_pred             Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhc-------Cc-ch---hhHHHHHHHHHHhcccccchHHH
Q 036338          113 NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSN-------VN-DV---NMLKQVIRVLDLILNKIEDQQHL  180 (408)
Q Consensus       113 ~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s-------~~-~~---~~~e~A~~~L~~L~~~~~~~~~~  180 (408)
                      +++ |..|+..|..--+..++..-.+-...|.+..|+.=+-+       +. ..   .-+.+|+..|-.++.  +.+.  
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs--hpet--   83 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS--HPET--   83 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH---TTT--
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc--ChHH--
Confidence            345 77888887765544455555555555888777655433       22 11   224677777777776  5544  


Q ss_pred             HHHHhccCcccHHHHHHHHhcCC----ChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338          181 MNLILKRDQDCLNSLLLVLKQQE----SVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSLDSDRRLIEAS  254 (408)
Q Consensus       181 ~~~i~~~~~g~i~~Lv~lL~~~~----~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A  254 (408)
                      |..+.  ++.+.-.|.-.|+...    -...|-.+..+++.|.+.++  .-..+.. .+++|.-++.++.| +.-.+-.|
T Consensus        84 r~~Fl--~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~-tEiiplcLr~me~G-selSKtvA  159 (262)
T PF04078_consen   84 RMPFL--KAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ-TEIIPLCLRIMEFG-SELSKTVA  159 (262)
T ss_dssp             HHHHH--HTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC-TTHHHHHHHHHHHS--HHHHHHH
T ss_pred             HHHHH--HcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh-hchHHHHHHHHHhc-cHHHHHHH
Confidence            55554  5665545555554320    13467778999999987543  3333334 78999999999998 76677778


Q ss_pred             HHHHHHhccCcch-------HHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338          255 LSCLITISSSKRA-------KTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT  326 (408)
Q Consensus       255 ~~aL~~Ls~~~~n-------~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~  326 (408)
                      .-.+..+-.++..       ..++- =..++..+|.-|..                    ..++.+.....+.-..|+.+
T Consensus       160 tfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~--------------------~pS~RLLKhIIrCYlRLsdn  219 (262)
T PF04078_consen  160 TFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVK--------------------QPSPRLLKHIIRCYLRLSDN  219 (262)
T ss_dssp             HHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHH--------------------S--HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHcc--------------------CCChhHHHHHHHHHHHHccC
Confidence            7777777555432       12222 12344555554443                    24789999999999999999


Q ss_pred             HHHHHHHHhh
Q 036338          327 KQGRMEICQD  336 (408)
Q Consensus       327 ~~~~~~~~~~  336 (408)
                      +..|.++...
T Consensus       220 prar~aL~~~  229 (262)
T PF04078_consen  220 PRAREALRQC  229 (262)
T ss_dssp             TTHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9988888653

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=90.73  E-value=0.61  Score=38.10  Aligned_cols=72  Identities=14%  Similarity=0.221  Sum_probs=51.8

Q ss_pred             ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 036338          142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIA  219 (408)
Q Consensus       142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La  219 (408)
                      -.+..|+.+|....+...+.-|+.-|+.++.  .-++. +.++.  +.|+=..+..++.+. +.++|.+|..++..|-
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr--~~p~g-r~ii~--~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVR--HYPNG-RNIIE--KLGAKERVMELMNHE-DPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHH--H-GGG-HHHHH--HHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHH--HChhH-HHHHH--hcChHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence            3466789999555445555667777777775  33333 67776  789999999999998 9999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=90.66  E-value=3.3  Score=35.71  Aligned_cols=107  Identities=19%  Similarity=0.162  Sum_probs=73.6

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhcC-cchhhHHhhhcChHHHHHHhcc--cCCCHHHHHHHHHHHHHhccCcchHH
Q 036338          193 NSLLLVLKQQESVDSRIESLRLLEFIAGD-ADSKVKIAERDGLLAETVKSLS--LDSDRRLIEASLSCLITISSSKRAKT  269 (408)
Q Consensus       193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~-~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~~A~~aL~~Ls~~~~n~~  269 (408)
                      ..+-.++..+ +.+....+..++..|=-. ++....+..+.|+++.++.+..  .. +...+..++.+|..=|.....|.
T Consensus        46 ~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~d~~~r~  123 (157)
T PF11701_consen   46 DFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSK-DRKVQKAALELLSAACIDKSCRT  123 (157)
T ss_dssp             HHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHccHHHHH
Confidence            3344455555 667788888888877543 4666666666899999999998  44 77888888888877777655555


Q ss_pred             HHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcc-hHHHHHHHHHH
Q 036338          270 KLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVL-ITEKALRLVEI  322 (408)
Q Consensus       270 ~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~L~~  322 (408)
                      .+. ..+++.|-++++..                    .+.. ++..|+-+|..
T Consensus       124 ~I~-~~~~~~L~~~~~~~--------------------~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen  124 FIS-KNYVSWLKELYKNS--------------------KDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             CCH-HHCHHHHHHHTTTC--------------------C-HH-CHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHccc--------------------cchHHHHHHHHHHHhc
Confidence            444 45788888888542                    2344 77777777654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=90.25  E-value=11  Score=36.36  Aligned_cols=148  Identities=16%  Similarity=0.200  Sum_probs=79.4

Q ss_pred             HHHHHHHHhcCChh-HHHHHHHHHHHhhh--ChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHH---Hhcccc
Q 036338          102 VKDIIRVAISKNED-FSENLTKIVAFAKE--SDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLD---LILNKI  174 (408)
Q Consensus       102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~--~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~---~L~~~~  174 (408)
                      +..+.+.++.+..+ +.-|++.+.-++-.  .......+.+  ...|.|...+.... ..+....++.+|.   .++.  
T Consensus        88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~--~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~--  163 (309)
T PF05004_consen   88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE--ELKPVLKRILTDSSASPKARAACLEALAICTFVGG--  163 (309)
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH--HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhc--
Confidence            44566667766654 66677776666543  2233445554  46888999988766 3433233343443   3332  


Q ss_pred             cchHHHHHHHhccCcccHH--HHHHHHhcCCC---------hHHHHHHHHHHHHhhcC-cchh-hHHhhhcChHHHHHHh
Q 036338          175 EDQQHLMNLILKRDQDCLN--SLLLVLKQQES---------VDSRIESLRLLEFIAGD-ADSK-VKIAERDGLLAETVKS  241 (408)
Q Consensus       175 ~~~~~~~~~i~~~~~g~i~--~Lv~lL~~~~~---------~~~~~~Aa~~L~~La~~-~~~~-~~i~~~~g~i~~Lv~l  241 (408)
                      .+.+.+...+     ..+.  .....++.+++         ..+...|...-..|... +..+ ....  ...++.|+.+
T Consensus       164 ~d~~~~~~~~-----~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~l  236 (309)
T PF05004_consen  164 SDEEETEELM-----ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL--EEALPALSEL  236 (309)
T ss_pred             CChhHHHHHH-----HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHH
Confidence            2322212111     1222  11122222212         34555555555544433 3321 2222  3579999999


Q ss_pred             cccCCCHHHHHHHHHHHHHh
Q 036338          242 LSLDSDRRLIEASLSCLITI  261 (408)
Q Consensus       242 L~~~~~~~~~~~A~~aL~~L  261 (408)
                      |.+. +.++|.+|..+|.-|
T Consensus       237 L~s~-d~~VRiAAGEaiAll  255 (309)
T PF05004_consen  237 LDSD-DVDVRIAAGEAIALL  255 (309)
T ss_pred             hcCC-CHHHHHHHHHHHHHH
Confidence            9987 999999998887655

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=90.11  E-value=2.2  Score=37.12  Aligned_cols=111  Identities=18%  Similarity=0.191  Sum_probs=75.8

Q ss_pred             ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHH-hhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc----C
Q 036338          190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKI-AERDGLLAETVKSLSLDSDRRLIEASLSCLITISS----S  264 (408)
Q Consensus       190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i-~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~----~  264 (408)
                      ..+..+..+|++. +.+.|..++.++..++...+. +.+ ....-.+..|+++|+...++..++.+..+|..|..    .
T Consensus        25 ~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3456678888888 899999999999888866432 333 23234789999999987677888999888887754    2


Q ss_pred             cchHHHHHh---cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          265 KRAKTKLIN---HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       265 ~~n~~~~~~---~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      ++-..++..   .+.|+.++.+++                       +....+.++.+|..|-.
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~-----------------------~~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQ-----------------------DSSCPETALDALATLLP  143 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHh-----------------------ccccHHHHHHHHHHHHH
Confidence            333333332   355566666664                       24667777777777743

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=89.92  E-value=0.29  Score=40.30  Aligned_cols=49  Identities=18%  Similarity=0.327  Sum_probs=40.3

Q ss_pred             CcccccCccccCCCceec----CCCCcccHhhHHHHHhc--CCCCCCCcccccCC
Q 036338           12 SFFRCPISLDVMKSPVSL----CTGVTYDRASIQRWLDS--GNNTCPATMQVLQS   60 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~----~cgh~f~r~cI~~~~~~--~~~~CP~~~~~l~~   60 (408)
                      .-+-|-||++.-.|.--+    .||++.|-.|--..|+.  -.++||.|+..+..
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            457799999999998776    39999999999997765  35789999876644

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=89.90  E-value=0.2  Score=39.19  Aligned_cols=27  Identities=26%  Similarity=0.600  Sum_probs=23.5

Q ss_pred             CCCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338           30 CTGVTYDRASIQRWLDSGNNTCPATMQV   57 (408)
Q Consensus        30 ~cgh~f~r~cI~~~~~~~~~~CP~~~~~   57 (408)
                      .|.|.|--.||.+|+++ ...||.+.+.
T Consensus        80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e  106 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKT-RNVCPLDNKE  106 (114)
T ss_pred             ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence            49999999999999996 5579999764

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=89.58  E-value=0.2  Score=47.03  Aligned_cols=43  Identities=23%  Similarity=0.388  Sum_probs=36.4

Q ss_pred             cccccCccccCCC----ceecCCCCcccHhhHHHHHhcCCCCCCCccc
Q 036338           13 FFRCPISLDVMKS----PVSLCTGVTYDRASIQRWLDSGNNTCPATMQ   56 (408)
Q Consensus        13 ~~~Cpi~~~~~~d----Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~   56 (408)
                      ++-||||.+.+.+    |..++|||+--.+|.++....+ .+||.|.+
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence            4569999988765    7778999999989998888877 89999976

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.52  E-value=13  Score=39.62  Aligned_cols=177  Identities=16%  Similarity=0.215  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHH-HHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIV-AFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~-~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      .+.+..+-+.+.+...+ |..|++.+- .+.-+ .+       ..+..|-++......+ .....-.-.-|.|-+.  ..
T Consensus        12 k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G-~D-------vSslF~dvvk~~~T~d-lelKKlvyLYl~nYa~--~~   80 (734)
T KOG1061|consen   12 KGEIPELKSQLNSQSKEKRKDAVKKVIAYMTVG-KD-------VSSLFPDVVKCMQTRD-LELKKLVYLYLMNYAK--GK   80 (734)
T ss_pred             hhhchHHHHHhhhhhhhhHHHHHHHHHhcCccC-cc-------hHhhhHHHHhhcccCC-chHHHHHHHHHHHhhc--cC
Confidence            44566666666444445 666766543 33322 11       1245666677666555 2221322233334443  22


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      ..  .      .-+++..+++=-.+. ++..|..|.+.+..+-..     .+.  .-.+.||.+.++++ ++-+++.|+-
T Consensus        81 P~--~------a~~avnt~~kD~~d~-np~iR~lAlrtm~~l~v~-----~i~--ey~~~Pl~~~l~d~-~~yvRktaa~  143 (734)
T KOG1061|consen   81 PD--L------AILAVNTFLKDCEDP-NPLIRALALRTMGCLRVD-----KIT--EYLCDPLLKCLKDD-DPYVRKTAAV  143 (734)
T ss_pred             ch--H------HHhhhhhhhccCCCC-CHHHHHHHhhceeeEeeh-----HHH--HHHHHHHHHhccCC-ChhHHHHHHH
Confidence            22  1      124455555544455 777777766665544322     233  24689999999997 8888888887


Q ss_pred             HHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338          257 CLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT  326 (408)
Q Consensus       257 aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~  326 (408)
                      ...++=.  .+.......|.++.|-+++.+.                     ++.++..|+++|..+...
T Consensus       144 ~vakl~~--~~~~~~~~~gl~~~L~~ll~D~---------------------~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  144 CVAKLFD--IDPDLVEDSGLVDALKDLLSDS---------------------NPMVVANALAALSEIHES  190 (734)
T ss_pred             HHHHhhc--CChhhccccchhHHHHHHhcCC---------------------CchHHHHHHHHHHHHHHh
Confidence            7777644  3455566899999999999853                     889999999999999753

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=89.47  E-value=0.09  Score=58.10  Aligned_cols=46  Identities=22%  Similarity=0.409  Sum_probs=38.3

Q ss_pred             CCCcccccCccccCCC-ceecCCCCcccHhhHHHHHhcCCCCCCCccc
Q 036338           10 VPSFFRCPISLDVMKS-PVSLCTGVTYDRASIQRWLDSGNNTCPATMQ   56 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~d-Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~   56 (408)
                      +-..+.|+||++++++ =.+..|||.||..|++-|... +..||.|+.
T Consensus      1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ks 1196 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKS 1196 (1394)
T ss_pred             hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhh
Confidence            3456789999999994 556789999999999999985 456999973

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=89.17  E-value=2.6  Score=37.05  Aligned_cols=93  Identities=19%  Similarity=0.145  Sum_probs=70.7

Q ss_pred             ChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHH
Q 036338          204 SVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKL  283 (408)
Q Consensus       204 ~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~l  283 (408)
                      ++.+|.++..+++.|+....   .+.+  ..++.+...|+++ ++.+|+.|+.+|..|...+--+.+   ...+..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~---~~ve--~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYP---NLVE--PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCc---HHHH--hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHH
Confidence            46789999999999986553   2333  4689999999997 999999999999999876432221   1223667777


Q ss_pred             hccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338          284 ITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT  326 (408)
Q Consensus       284 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~  326 (408)
                      +.+                     .++.++..|...+..+...
T Consensus        72 l~D---------------------~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVD---------------------ENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcC---------------------CCHHHHHHHHHHHHHHHHh
Confidence            764                     3889999999999998764

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=89.02  E-value=26  Score=34.89  Aligned_cols=126  Identities=11%  Similarity=0.146  Sum_probs=89.3

Q ss_pred             ChHHHHHHHhhcCc--chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHh-cC--CChHHHHHHHHHHH
Q 036338          142 GLVVMLVEILSNVN--DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLK-QQ--ESVDSRIESLRLLE  216 (408)
Q Consensus       142 G~i~~Lv~lL~s~~--~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~-~~--~~~~~~~~Aa~~L~  216 (408)
                      -....|..+++...  ...+...|+.++..+..  .|+. .-..+.  ++|.++.+++.+. .+  .+.++-..--.+|.
T Consensus       106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~--nePT-~~~~l~--e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~  180 (379)
T PF06025_consen  106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIH--NEPT-SFSILQ--EAGLIDAFLDAITAKGILPSSEVLTSLPNVLS  180 (379)
T ss_pred             hHHHHHHHHHhCccccchHHHHHHHHHHHHHHh--cCCc-hhHHHH--HcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence            55666777777665  56666888888888775  3443 356676  9999999999998 43  25677777778889


Q ss_pred             HhhcCcchhhHHhhhcChHHHHHHhcccCCCH------HHHHHHHHHHHHhccCcc-hHHHHHh
Q 036338          217 FIAGDADSKVKIAERDGLLAETVKSLSLDSDR------RLIEASLSCLITISSSKR-AKTKLIN  273 (408)
Q Consensus       217 ~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~------~~~~~A~~aL~~Ls~~~~-n~~~~~~  273 (408)
                      .||.+.+..+.+.+ .+.++.+++++.+....      +....--.++-.|.++.. -|..+++
T Consensus       181 AicLN~~Gl~~~~~-~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  181 AICLNNRGLEKVKS-SNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID  243 (379)
T ss_pred             HHhcCHHHHHHHHh-cChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence            99999999999988 79999999999864221      223333445667777655 4444443

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.68  E-value=0.23  Score=52.76  Aligned_cols=40  Identities=15%  Similarity=0.463  Sum_probs=34.7

Q ss_pred             cccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCccc
Q 036338           13 FFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQ   56 (408)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~   56 (408)
                      .-.|..|.-.+.=|++- .|||.|-+.|.+    ++...||.|.-
T Consensus       840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~  880 (933)
T KOG2114|consen  840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP  880 (933)
T ss_pred             eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence            35899999999999985 799999999988    56678999974

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=88.58  E-value=0.32  Score=47.08  Aligned_cols=51  Identities=29%  Similarity=0.605  Sum_probs=40.5

Q ss_pred             cccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCc
Q 036338           13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFV   64 (408)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~   64 (408)
                      ...|.++...|.|||-...|-.|+-..|-.|++. ..+=|.+++++...+|+
T Consensus        40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLI   90 (518)
T KOG0883|consen   40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLI   90 (518)
T ss_pred             hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccce
Confidence            3579999999999999999999999999999974 33456666665555544

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.51  E-value=37  Score=37.47  Aligned_cols=141  Identities=12%  Similarity=0.123  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhc------Cc-chhhHHHHHHHHHHhcccccchHHHHHHHhccC
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSN------VN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRD  188 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s------~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~  188 (408)
                      ..+|+..+..+++.  +.++.+-   |.++.+++.|.+      +. +.+-.+-|+.++++|+.-+......+..+   +
T Consensus       389 ~~Aa~~~l~~~~~K--R~ke~l~---k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m---E  460 (1010)
T KOG1991|consen  389 DTAALDFLTTLVSK--RGKETLP---KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM---E  460 (1010)
T ss_pred             cHHHHHHHHHHHHh--cchhhhh---hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH---H
Confidence            34566666666543  2222222   788899999973      22 45556778888887763111111113333   2


Q ss_pred             cccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcch
Q 036338          189 QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRA  267 (408)
Q Consensus       189 ~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n  267 (408)
                      .-.++.+.-.+++. -.-.|.+|++++..++..+ .......   .+++...+.|.++.+..++-.|+-||..+-++.+.
T Consensus       461 ~flv~hVfP~f~s~-~g~Lrarac~vl~~~~~~df~d~~~l~---~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~  536 (1010)
T KOG1991|consen  461 YFLVNHVFPEFQSP-YGYLRARACWVLSQFSSIDFKDPNNLS---EALELTHNCLLNDNELPVRVEAALALQSFISNQEQ  536 (1010)
T ss_pred             HHHHHHhhHhhcCc-hhHHHHHHHHHHHHHHhccCCChHHHH---HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence            33355555566776 7789999999999999543 2333332   36788888888545788999999999998877654


Q ss_pred             H
Q 036338          268 K  268 (408)
Q Consensus       268 ~  268 (408)
                      .
T Consensus       537 ~  537 (1010)
T KOG1991|consen  537 A  537 (1010)
T ss_pred             h
Confidence            4

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=88.39  E-value=1.9  Score=37.95  Aligned_cols=74  Identities=20%  Similarity=0.203  Sum_probs=60.5

Q ss_pred             CcccHHHHHHHHhcC--------CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338          188 DQDCLNSLLLVLKQQ--------ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI  259 (408)
Q Consensus       188 ~~g~i~~Lv~lL~~~--------~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~  259 (408)
                      +.||+..|+.+|..-        .+.+....+...|..|..+..+...+....+++..|+..|.+. +..++..++..|.
T Consensus       105 ~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~  183 (187)
T PF06371_consen  105 ELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLALEILA  183 (187)
T ss_dssp             HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence            679999999988631        1345677789999999988888888887799999999999986 8999999999998


Q ss_pred             Hhc
Q 036338          260 TIS  262 (408)
Q Consensus       260 ~Ls  262 (408)
                      .+|
T Consensus       184 ~lc  186 (187)
T PF06371_consen  184 ALC  186 (187)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=88.31  E-value=9.4  Score=35.75  Aligned_cols=168  Identities=13%  Similarity=0.167  Sum_probs=101.3

Q ss_pred             HHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcC---CChHHHHHHHHHHHHhh
Q 036338          144 VVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQ---ESVDSRIESLRLLEFIA  219 (408)
Q Consensus       144 i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~---~~~~~~~~Aa~~L~~La  219 (408)
                      +..+..++.+.. +..  --++.+++.+..  +...  -..+.....+....+..++..+   .+...+.-+.+++.|+-
T Consensus        65 ~~~~~~~~~~Wp~~~~--fP~lDLlRl~~l--~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF  138 (268)
T PF08324_consen   65 LILLLKILLSWPPESR--FPALDLLRLAAL--HPPA--SDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLF  138 (268)
T ss_dssp             HHHHHHHHCCS-CCC---HHHHHHHHHHCC--CHCH--HHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCccc--hhHHhHHHHHHh--CccH--HHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhh
Confidence            344555555544 333  667777777765  3332  2333311223345555555443   25667788999999999


Q ss_pred             cCcchhhHHhhhcC-hHHHHHHhcccCC---CHHHHHHHHHHHHHhccCcc-hH-HHHHhcCcHHHHHHHhccCCCCCCC
Q 036338          220 GDADSKVKIAERDG-LLAETVKSLSLDS---DRRLIEASLSCLITISSSKR-AK-TKLINHKLITELGKLITDGHNGNGS  293 (408)
Q Consensus       220 ~~~~~~~~i~~~~g-~i~~Lv~lL~~~~---~~~~~~~A~~aL~~Ls~~~~-n~-~~~~~~G~i~~Lv~lL~~~~~~~~~  293 (408)
                      .+...+..+....+ .+...+..+....   +..++.+++..++|++..-. ++ ..-.....+..+++.+...      
T Consensus       139 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~------  212 (268)
T PF08324_consen  139 SHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSRE------  212 (268)
T ss_dssp             TSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCC------
T ss_pred             CCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccc------
Confidence            99888888876444 3444555444432   56789999999999976321 11 1111222445566644322      


Q ss_pred             CCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhh
Q 036338          294 GNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQD  336 (408)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  336 (408)
                                   ..++++.-.++.+|.+|...+.........
T Consensus       213 -------------~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~  242 (268)
T PF08324_consen  213 -------------ESDEEALYRLLVALGTLLSSSDSAKQLAKS  242 (268)
T ss_dssp             -------------HTSHHHHHHHHHHHHHHHCCSHHHHHHCCC
T ss_pred             -------------cCCHHHHHHHHHHHHHHhccChhHHHHHHH
Confidence                         348899999999999999776666666553

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=88.21  E-value=44  Score=36.60  Aligned_cols=126  Identities=18%  Similarity=0.273  Sum_probs=78.9

Q ss_pred             hhhcCChHHHHHHHhhcCc----chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHh----cCCC----
Q 036338          137 LAKFDGLVVMLVEILSNVN----DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLK----QQES----  204 (408)
Q Consensus       137 i~~~~G~i~~Lv~lL~s~~----~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~----~~~~----  204 (408)
                      +.+. |++..|+.+|.+-.    +.......+.+|..++.  -..+  |+.+.  +.|+++.|++.|.    .+ .    
T Consensus       113 ~~~~-gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K--v~~N--R~~Ll--~~~al~~LL~~L~~~l~~~-~~~~~  184 (802)
T PF13764_consen  113 LAEC-GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK--VKVN--RRALL--ELNALNRLLSVLNRALQAN-QNSSQ  184 (802)
T ss_pred             hhcC-CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh--hHHH--HHHHH--HcCCHHHHHHHHHHHHhCc-ccccc
Confidence            4445 99999999998744    22334556667776765  4444  56665  7999999999885    22 3    


Q ss_pred             hHHHHHHHHHHHHhhcCcch---hhHHh--h-------hcChHHHHHHhcccC---CCHHHHHHHHHHHHHhccCcchHH
Q 036338          205 VDSRIESLRLLEFIAGDADS---KVKIA--E-------RDGLLAETVKSLSLD---SDRRLIEASLSCLITISSSKRAKT  269 (408)
Q Consensus       205 ~~~~~~Aa~~L~~La~~~~~---~~~i~--~-------~~g~i~~Lv~lL~~~---~~~~~~~~A~~aL~~Ls~~~~n~~  269 (408)
                      .+.-+....++..|......   .....  .       ...-+..|++.+.+.   .++.+.+..++.|-+|+.+.....
T Consensus       185 ~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m  264 (802)
T PF13764_consen  185 AEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM  264 (802)
T ss_pred             chHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH
Confidence            45556666666666433211   11000  0       011366677777643   367889999999999998766544


Q ss_pred             H
Q 036338          270 K  270 (408)
Q Consensus       270 ~  270 (408)
                      .
T Consensus       265 ~  265 (802)
T PF13764_consen  265 D  265 (802)
T ss_pred             H
Confidence            3

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=87.74  E-value=18  Score=34.77  Aligned_cols=131  Identities=12%  Similarity=0.042  Sum_probs=90.6

Q ss_pred             HHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCC-CHHHHHHHHHHHHHhccCcchHHHHH-hc
Q 036338          197 LVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDS-DRRLIEASLSCLITISSSKRAKTKLI-NH  274 (408)
Q Consensus       197 ~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~~A~~aL~~Ls~~~~n~~~~~-~~  274 (408)
                      +++++- +.-+|--|...|.++....+.|..+-...-.-..++.++++.. +.+.+=.++-.+|-|..++.-.+.+- -.
T Consensus       156 kl~Q~i-~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~  234 (432)
T COG5231         156 KLSQLI-DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMD  234 (432)
T ss_pred             HHHHHH-HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            444444 5567888999999999998888777653456678888888642 46888999999999998877653333 25


Q ss_pred             CcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHH-HHHHHHhhcCchHHHHHHHHH
Q 036338          275 KLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQ-GRMEICQDAALLNGVVQKMLK  349 (408)
Q Consensus       275 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~-~~~~~~~~~g~i~~lv~~l~~  349 (408)
                      ..|.-|+++..+.                    ....+-..+++++.|+++ .+. --..+... |-+..-|+.|..
T Consensus       235 dli~dli~iVk~~--------------------~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll-~~~~k~vq~L~e  290 (432)
T COG5231         235 DLINDLIAIVKER--------------------AKEKVLRLCCGIVANVLDKSPKGYIFSPLLL-NDISKCVQVLLE  290 (432)
T ss_pred             HHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhcccccchhhhhHhh-cchHHHHHHHHh
Confidence            6778888888762                    356778889999999987 322 22223332 434445555544

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=87.70  E-value=5.9  Score=37.03  Aligned_cols=95  Identities=14%  Similarity=0.206  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHH
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSL  195 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~L  195 (408)
                      ...|+..|.-++--++..|..+.+. ..+..|+++|.......++-.++.+|..+..  ..... .+.+.  +.+++..+
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~-~~m~lll~LL~~~~~~~i~~a~L~tLv~iLl--d~p~N-~r~FE--~~~Gl~~v  181 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHRE-QNMELLLDLLSPSNPPAIQSACLDTLVCILL--DSPEN-QRDFE--ELNGLSTV  181 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhh-hhHHHHHHHhccCCCchHHHHHHHHHHHHHH--cChHH-HHHHH--HhCCHHHH
Confidence            4557888888888889999999999 9999999999554434445778888887765  33333 34554  78999999


Q ss_pred             HHHHhcC-CChHHHHHHHHHHH
Q 036338          196 LLVLKQQ-ESVDSRIESLRLLE  216 (408)
Q Consensus       196 v~lL~~~-~~~~~~~~Aa~~L~  216 (408)
                      +.++++. .+.++|......|.
T Consensus       182 ~~llk~~~~~~~~r~K~~EFL~  203 (257)
T PF08045_consen  182 CSLLKSKSTDRELRLKCIEFLY  203 (257)
T ss_pred             HHHHccccccHHHhHHHHHHHH
Confidence            9999864 14566666555555

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=87.67  E-value=18  Score=36.43  Aligned_cols=113  Identities=23%  Similarity=0.276  Sum_probs=78.0

Q ss_pred             hHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH------------HHHHHhccCcccHHHHHHHHhcCCChHHHHH
Q 036338          143 LVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH------------LMNLILKRDQDCLNSLLLVLKQQESVDSRIE  210 (408)
Q Consensus       143 ~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~------------~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~  210 (408)
                      .+..|+.+|.++.   .-..|+..+.-|..  +.++.            +|+.+   -.-.+|.|++..+.. +.+.|.+
T Consensus       272 ~~~~L~~lL~~~~---~g~~aA~~f~il~~--d~~~~l~~~~~a~vklLykQR~---F~~~~p~L~~~~~~~-~~~~k~~  342 (415)
T PF12460_consen  272 LLDKLLELLSSPE---LGQQAAKAFGILLS--DSDDVLNKENHANVKLLYKQRF---FTQVLPKLLEGFKEA-DDEIKSN  342 (415)
T ss_pred             HHHHHHHHhCChh---hHHHHHHHHhhHhc--CcHHhcCccccchhhhHHhHHH---HHHHHHHHHHHHhhc-ChhhHHH
Confidence            3555777777643   23556666666654  21221            12222   235678888888877 7778888


Q ss_pred             HHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc
Q 036338          211 SLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK  265 (408)
Q Consensus       211 Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~  265 (408)
                      -..+|..+..+-.....+.+-...+|.|++-|..+ +.+++..++.+|..+....
T Consensus       343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcC
Confidence            88899988876555555555456889999999876 8889999999999988765

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.67  E-value=0.42  Score=46.17  Aligned_cols=49  Identities=22%  Similarity=0.349  Sum_probs=41.8

Q ss_pred             CcccccCccccCCC---ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           12 SFFRCPISLDVMKS---PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        12 ~~~~Cpi~~~~~~d---Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      ..+.|.|+++.|.|   |++.|.||+|-...|+.|-..++-.||.+++.+..
T Consensus       329 S~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~  380 (389)
T KOG0396|consen  329 SRLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRY  380 (389)
T ss_pred             hHHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccH
Confidence            34789999999988   99999999999999999976555789999887643

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.56  E-value=6.2  Score=41.37  Aligned_cols=87  Identities=15%  Similarity=0.093  Sum_probs=62.7

Q ss_pred             CcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcch
Q 036338          188 DQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRA  267 (408)
Q Consensus       188 ~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n  267 (408)
                      .+|+-..+|.-|... =.++|..|+..+..|+.+..   .+..  ..+..||+++.++ ...++..|..+|..++.+-. 
T Consensus       371 ~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP---~FA~--~aldfLvDMfNDE-~~~VRL~ai~aL~~Is~~l~-  442 (823)
T KOG2259|consen  371 PSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSP---GFAV--RALDFLVDMFNDE-IEVVRLKAIFALTMISVHLA-  442 (823)
T ss_pred             cccccceeeeechHH-HHHHHHHHHHHHHHHHcCCC---CcHH--HHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHhe-
Confidence            456666777777665 67899999999999987542   2332  3589999999987 77899999999999987622 


Q ss_pred             HHHHHhcCcHHHHHHHhcc
Q 036338          268 KTKLINHKLITELGKLITD  286 (408)
Q Consensus       268 ~~~~~~~G~i~~Lv~lL~~  286 (408)
                          ++..-++.+++.|.+
T Consensus       443 ----i~eeql~~il~~L~D  457 (823)
T KOG2259|consen  443 ----IREEQLRQILESLED  457 (823)
T ss_pred             ----ecHHHHHHHHHHHHh
Confidence                233445555555553

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.56  E-value=0.58  Score=45.81  Aligned_cols=45  Identities=18%  Similarity=0.385  Sum_probs=33.9

Q ss_pred             CcccccCccccCCCc---eecCCCCcccHhhHHHHHhc----CC---CCCCCccc
Q 036338           12 SFFRCPISLDVMKSP---VSLCTGVTYDRASIQRWLDS----GN---NTCPATMQ   56 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dP---v~~~cgh~f~r~cI~~~~~~----~~---~~CP~~~~   56 (408)
                      .-|-|.||.+...-.   +.++|+|.||++|+..|+..    |.   -.||.++-
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            457899999877653   35699999999999999753    32   35887654

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=87.53  E-value=0.44  Score=50.16  Aligned_cols=52  Identities=6%  Similarity=-0.113  Sum_probs=40.1

Q ss_pred             CcCCCCCCcccccCccccCCCce----ecC---CCCcccHhhHHHHHhc-----CCCCCCCccc
Q 036338            5 DLYITVPSFFRCPISLDVMKSPV----SLC---TGVTYDRASIQRWLDS-----GNNTCPATMQ   56 (408)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~dPv----~~~---cgh~f~r~cI~~~~~~-----~~~~CP~~~~   56 (408)
                      +...+.++.-+|++|..-+.+||    +.+   |+|.||-.||..|.+.     .+..|++|..
T Consensus        88 E~DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~  151 (1134)
T KOG0825|consen   88 EVDEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE  151 (1134)
T ss_pred             ccCcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence            34556677889999999999966    334   9999999999999764     2345788754

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=87.08  E-value=0.21  Score=45.54  Aligned_cols=49  Identities=10%  Similarity=0.193  Sum_probs=31.6

Q ss_pred             CCcee-cCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHH
Q 036338           24 KSPVS-LCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWS   77 (408)
Q Consensus        24 ~dPv~-~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~   77 (408)
                      .||.- +.|+|.||..|......   ..||.|++++.-..+.+|  |-.-|..++
T Consensus        15 ~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir~i~l~~s--lp~~ik~~F   64 (233)
T KOG4739|consen   15 QDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIRIIQLNRS--LPTDIKSYF   64 (233)
T ss_pred             CCceeeeechhhhhhhhcccCCc---cccccccceeeeeecccc--cchhHHHHc
Confidence            45654 47999999999543222   389999998654444444  444455555

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.03  E-value=27  Score=37.65  Aligned_cols=161  Identities=16%  Similarity=0.213  Sum_probs=99.0

Q ss_pred             HHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhc
Q 036338          108 VAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILK  186 (408)
Q Consensus       108 ~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~  186 (408)
                      .|+|.++. -...++....+|..+ ++      . .++.+|+++|.+....|  .-.+..+..++.  .           
T Consensus       295 Ll~S~n~sVVmA~aql~y~lAP~~-~~------~-~i~kaLvrLLrs~~~vq--yvvL~nIa~~s~--~-----------  351 (968)
T KOG1060|consen  295 LLQSRNPSVVMAVAQLFYHLAPKN-QV------T-KIAKALVRLLRSNREVQ--YVVLQNIATISI--K-----------  351 (968)
T ss_pred             HHhcCCcHHHHHHHhHHHhhCCHH-HH------H-HHHHHHHHHHhcCCcch--hhhHHHHHHHHh--c-----------
Confidence            46677766 677777888887653 11      1 56778999999877444  444444444432  1           


Q ss_pred             cCcccHHHHHHH--HhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccC
Q 036338          187 RDQDCLNSLLLV--LKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSS  264 (408)
Q Consensus       187 ~~~g~i~~Lv~l--L~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~  264 (408)
                       ..+.+.+-++-  +.+.....++..-..+|.+|+......       -+++.|-..+++. +.+...+|..||...+..
T Consensus       352 -~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~-------~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~  422 (968)
T KOG1060|consen  352 -RPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNIS-------EILRELQTYIKSS-DRSFAAAAVKAIGRCASR  422 (968)
T ss_pred             -chhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHH-------HHHHHHHHHHhcC-chhHHHHHHHHHHHHHHh
Confidence             11222222111  122214556666777888887543322       2345567777775 556777788888776653


Q ss_pred             cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          265 KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       265 ~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      -    .-+..-.+.-||.||+++                     +..++..|+.++..|..
T Consensus       423 ~----~sv~~tCL~gLv~Llssh---------------------de~Vv~eaV~vIk~Llq  458 (968)
T KOG1060|consen  423 I----GSVTDTCLNGLVQLLSSH---------------------DELVVAEAVVVIKRLLQ  458 (968)
T ss_pred             h----CchhhHHHHHHHHHHhcc---------------------cchhHHHHHHHHHHHHh
Confidence            2    123445778899999875                     77888889999988875

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.99  E-value=46  Score=35.49  Aligned_cols=101  Identities=14%  Similarity=0.123  Sum_probs=59.9

Q ss_pred             HHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHH
Q 036338          104 DIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLM  181 (408)
Q Consensus       104 ~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~  181 (408)
                      .+-..|.+.++- ..-|+..+.++..  .++++.+..-   |+   ++|-|++ ..-+...|+-+|..|-+  ..+    
T Consensus       115 ~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~D---I~---KlLvS~~~~~~vkqkaALclL~L~r--~sp----  180 (938)
T KOG1077|consen  115 SIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFADD---IP---KLLVSGSSMDYVKQKAALCLLRLFR--KSP----  180 (938)
T ss_pred             HHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhhh---hH---HHHhCCcchHHHHHHHHHHHHHHHh--cCc----
Confidence            334445555554 6667888777744  3556655532   33   6777766 22222444444444544  122    


Q ss_pred             HHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338          182 NLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD  221 (408)
Q Consensus       182 ~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~  221 (408)
                      .++.  ..++..+++.+|... +..+-..+..+|..|+..
T Consensus       181 Dl~~--~~~W~~riv~LL~D~-~~gv~ta~~sLi~~lvk~  217 (938)
T KOG1077|consen  181 DLVN--PGEWAQRIVHLLDDQ-HMGVVTAATSLIEALVKK  217 (938)
T ss_pred             cccC--hhhHHHHHHHHhCcc-ccceeeehHHHHHHHHHc
Confidence            2342  447788889988877 666677778888877764

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=86.71  E-value=0.28  Score=39.16  Aligned_cols=34  Identities=12%  Similarity=0.239  Sum_probs=28.2

Q ss_pred             CCCCCcccccCccccCCCceec--CCCCcccHhhHH
Q 036338            8 ITVPSFFRCPISLDVMKSPVSL--CTGVTYDRASIQ   41 (408)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~--~cgh~f~r~cI~   41 (408)
                      +.+.++-.|++|++.+.+++..  ||||.|-..|+.
T Consensus        73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            4566777899999999987754  999999999874

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.60  E-value=0.4  Score=46.13  Aligned_cols=45  Identities=20%  Similarity=0.239  Sum_probs=36.5

Q ss_pred             ccccCccccCCCceecCCCCc-ccHhhHHHHHhcCCCCCCCcccccC
Q 036338           14 FRCPISLDVMKSPVSLCTGVT-YDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      --|=||+.--+|-+++||-|. .|..|-+..- -....||+||+++.
T Consensus       291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~  336 (349)
T KOG4265|consen  291 KECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIE  336 (349)
T ss_pred             CeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchH
Confidence            469999999999999999996 6889977653 12446999999864

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=86.45  E-value=0.22  Score=44.95  Aligned_cols=47  Identities=19%  Similarity=0.296  Sum_probs=35.9

Q ss_pred             CcccccCccc-cCCCcee----cC-CCCcccHhhHHHHHhcCCCCCC--Cccccc
Q 036338           12 SFFRCPISLD-VMKSPVS----LC-TGVTYDRASIQRWLDSGNNTCP--ATMQVL   58 (408)
Q Consensus        12 ~~~~Cpi~~~-~~~dPv~----~~-cgh~f~r~cI~~~~~~~~~~CP--~~~~~l   58 (408)
                      .+-.||+|+- .+-+|-+    .| |=|..|-+|..+.|..|...||  -|++.+
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL   63 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL   63 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence            3457999983 4445532    24 9999999999999999999999  676543

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=86.40  E-value=0.69  Score=44.23  Aligned_cols=59  Identities=14%  Similarity=0.358  Sum_probs=43.0

Q ss_pred             CCcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHH
Q 036338           11 PSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIW   76 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~   76 (408)
                      .+-+-||+|.+.|.-|+.= .-||.-|-+|=.+    -...||.|+.++.+   +.++.+.+.++..
T Consensus        46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~---~R~~amEkV~e~~  105 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN---IRCRAMEKVAEAV  105 (299)
T ss_pred             hhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCcccccccc---HHHHHHHHHHHhc
Confidence            4457899999999999764 4799999999432    23469999988752   2456666666543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=86.35  E-value=6.4  Score=39.81  Aligned_cols=156  Identities=8%  Similarity=0.039  Sum_probs=88.3

Q ss_pred             ChHHHHHHHhhcCc-chhhHHHHHHHHHHhccc----ccchHHHHHHHhccCcccHHHHHHHHh--cCCChHHHHHHHHH
Q 036338          142 GLVVMLVEILSNVN-DVNMLKQVIRVLDLILNK----IEDQQHLMNLILKRDQDCLNSLLLVLK--QQESVDSRIESLRL  214 (408)
Q Consensus       142 G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~----~~~~~~~~~~i~~~~~g~i~~Lv~lL~--~~~~~~~~~~Aa~~  214 (408)
                      .+...+...|.+.. ..+  +.+.+++.|++.-    +.........+.   .-.+..+++.-.  +..+..++.+|.++
T Consensus       433 ~aa~~il~sl~d~~ln~r--~KaawtlgnITdAL~~~~Ps~~s~~eR~s---g~ll~~~~~~A~~~~Ad~dkV~~navra  507 (728)
T KOG4535|consen  433 DAANAILMSLEDKSLNVR--AKAAWSLGNITDALIVNMPTPDSFQERFS---GLLLLKMLRSAIEASADKDKVKSNAVRA  507 (728)
T ss_pred             HHHHHHHHHhhhHhHhHH--HHHHHHhhhhHHHHHcCCCCchHHHHHHH---HHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence            34445555555544 444  8888888887521    011111112221   111222222221  11156788999999


Q ss_pred             HHHhhcCcc------hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHH-HHH-hcCcHHHHHHHhcc
Q 036338          215 LEFIAGDAD------SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKT-KLI-NHKLITELGKLITD  286 (408)
Q Consensus       215 L~~La~~~~------~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~-~~~-~~G~i~~Lv~lL~~  286 (408)
                      |+|+...-+      +++.+   .|.+..+....-.+....++-+|+.|+.||-+++.-.- .+- ..-+++.|..|+.+
T Consensus       508 LgnllQvlq~i~~~~~~e~~---~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~  584 (728)
T KOG4535|consen  508 LGNLLQFLQPIEKPTFAEII---EESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTS  584 (728)
T ss_pred             HhhHHHHHHHhhhccHHHHH---HHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHH
Confidence            999975322      22222   23444444444333367899999999999988765311 111 23467889999986


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          287 GHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      .                    .+-+++-.|+++|..-..
T Consensus       585 ~--------------------~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  585 C--------------------KNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             h--------------------ccceEeehhhhhhcCCCC
Confidence            3                    366788888888877544

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=86.27  E-value=0.74  Score=34.17  Aligned_cols=46  Identities=17%  Similarity=0.173  Sum_probs=22.1

Q ss_pred             ccccCccccCC-----Cceec--CCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338           14 FRCPISLDVMK-----SPVSL--CTGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        14 ~~Cpi~~~~~~-----dPv~~--~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      -+|.||++-.-     +|.+.  .|+.-.||.|.+--.+.|+..||+|+.++.
T Consensus        10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk   62 (80)
T PF14569_consen   10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK   62 (80)
T ss_dssp             -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred             cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence            47999987543     36665  499999999988778888899999987654

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=86.24  E-value=18  Score=37.70  Aligned_cols=95  Identities=15%  Similarity=0.274  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc--chhhHHHHHHHHHHhccccc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN--DVNMLKQVIRVLDLILNKIE  175 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~--~~~~~e~A~~~L~~L~~~~~  175 (408)
                      ...+..++.+....+.. |..|++.|-.++++++++...|++.      |+.+|.+.+  +..++..++..|..+     
T Consensus        58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDv------L~QlL~tdd~~E~~~v~~sL~~ll~~-----  126 (556)
T PF05918_consen   58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADV------LVQLLQTDDPVELDAVKNSLMSLLKQ-----  126 (556)
T ss_dssp             HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHH------HHHHTT---HHHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHH------HHHHHhcccHHHHHHHHHHHHHHHhc-----
Confidence            67888889988888877 9999999999999877776666654      999998876  333334444443322     


Q ss_pred             chHHHHHHHhccCcccHHHHHHHHh---cCCChHHHHHHHHHHH
Q 036338          176 DQQHLMNLILKRDQDCLNSLLLVLK---QQESVDSRIESLRLLE  216 (408)
Q Consensus       176 ~~~~~~~~i~~~~~g~i~~Lv~lL~---~~~~~~~~~~Aa~~L~  216 (408)
                      | .  +        +.+..|...+.   ++ +..+|+.+...|.
T Consensus       127 d-~--k--------~tL~~lf~~i~~~~~~-de~~Re~~lkFl~  158 (556)
T PF05918_consen  127 D-P--K--------GTLTGLFSQIESSKSG-DEQVRERALKFLR  158 (556)
T ss_dssp             --H--H--------HHHHHHHHHHH---HS--HHHHHHHHHHHH
T ss_pred             C-c--H--------HHHHHHHHHHHhcccC-chHHHHHHHHHHH
Confidence            2 1  2        22333444444   56 7788998877764

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=86.21  E-value=17  Score=39.79  Aligned_cols=173  Identities=15%  Similarity=0.165  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHhcCCh--h-HHHHHHHHHHHhhh-ChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhccccc
Q 036338          100 DEVKDIIRVAISKNE--D-FSENLTKIVAFAKE-SDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIE  175 (408)
Q Consensus       100 ~~i~~Lv~~L~s~~~--~-~~~Al~~L~~la~~-~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~  175 (408)
                      ..+...+++|.+.+.  + +..|..++..+... .+..+..+.   ..++.+++-|+..-   ..-.|+++|..++.+--
T Consensus       568 ~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~---~~L~il~eRl~nEi---TRl~AvkAlt~Ia~S~l  641 (1233)
T KOG1824|consen  568 TMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELP---RTLPILLERLGNEI---TRLTAVKALTLIAMSPL  641 (1233)
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhH---HHHHHHHHHHhchh---HHHHHHHHHHHHHhccc
Confidence            344555666766554  3 66777776666432 122332322   34566666665543   23667788877765211


Q ss_pred             chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhcccCCCHHHHHH
Q 036338          176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSLDSDRRLIEA  253 (408)
Q Consensus       176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  253 (408)
                      +-+  ..-+   -..+++.++..++.. ....|.....++..|..+..  .-....+  -++..+-.++... +..+.+.
T Consensus       642 ~i~--l~~~---l~~il~~l~~flrK~-~r~lr~~~l~a~~~L~~~~~~~~~~~~~e--~vL~el~~Lises-dlhvt~~  712 (1233)
T KOG1824|consen  642 DID--LSPV---LTEILPELASFLRKN-QRALRLATLTALDKLVKNYSDSIPAELLE--AVLVELPPLISES-DLHVTQL  712 (1233)
T ss_pred             eee--hhhh---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccHHHHH--HHHHHhhhhhhHH-HHHHHHH
Confidence            111  1111   235678888888876 66777777777776655431  1111111  2344455556554 7788899


Q ss_pred             HHHHHHHhccCcchHHHHHhcCcHHHHHHHhccC
Q 036338          254 SLSCLITISSSKRAKTKLINHKLITELGKLITDG  287 (408)
Q Consensus       254 A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~  287 (408)
                      |...|..+..........+..-.++.++.+++||
T Consensus       713 a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp  746 (1233)
T KOG1824|consen  713 AVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP  746 (1233)
T ss_pred             HHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc
Confidence            9999999998887777667777899999999976

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=86.17  E-value=3.4  Score=30.68  Aligned_cols=67  Identities=15%  Similarity=0.063  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcC
Q 036338          208 RIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHK  275 (408)
Q Consensus       208 ~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G  275 (408)
                      ...|.+++.+++..+..-..+-+ .++++.++++........+|--+..+|.-+++..+....+-+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~-~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDE-SDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhh-cCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            46789999999998887777765 78999999999876567888888899988898887777666655

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=85.89  E-value=0.094  Score=38.29  Aligned_cols=41  Identities=20%  Similarity=0.229  Sum_probs=22.9

Q ss_pred             cccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338           13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      +..||.|+..|    .-.-||.+|..|-.++..  ...||.|++++.
T Consensus         1 e~~CP~C~~~L----~~~~~~~~C~~C~~~~~~--~a~CPdC~~~Le   41 (70)
T PF07191_consen    1 ENTCPKCQQEL----EWQGGHYHCEACQKDYKK--EAFCPDCGQPLE   41 (70)
T ss_dssp             --B-SSS-SBE----EEETTEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred             CCcCCCCCCcc----EEeCCEEECcccccccee--cccCCCcccHHH
Confidence            46899999864    333489999999665433  246999998864

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=85.87  E-value=4.1  Score=37.48  Aligned_cols=80  Identities=14%  Similarity=0.140  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHhccCcchHHHHHhcC-------cHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 036338          249 RLIEASLSCLITISSSKRAKTKLINHK-------LITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVE  321 (408)
Q Consensus       249 ~~~~~A~~aL~~Ls~~~~n~~~~~~~G-------~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~  321 (408)
                      .-++.|+.+|..||..+.|...+...+       .+..|+.+|..                    .++...+|.|+.+|.
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~--------------------~e~~v~REfAvvlL~  198 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGM--------------------REDQVCREFAVVLLS  198 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcc--------------------ccchhHHHHHHHHHH
Confidence            568999999999999888877666543       44556666654                    458899999999999


Q ss_pred             HHhCCHHHH-HHHHhhcCchHHHHHHHH
Q 036338          322 ILSTTKQGR-MEICQDAALLNGVVQKML  348 (408)
Q Consensus       322 ~L~~~~~~~-~~~~~~~g~i~~lv~~l~  348 (408)
                      +|+..++.- ..++.+.+.|..|+..+-
T Consensus       199 ~La~~~~~~~r~iA~q~~~i~~Li~FiE  226 (257)
T PF12031_consen  199 NLAQGDEAAARAIAMQKPCISHLIAFIE  226 (257)
T ss_pred             HHhcccHHHHHHHHHhhchHHHHHHHHH
Confidence            999754433 345555688888888543

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=85.73  E-value=2.8  Score=38.53  Aligned_cols=83  Identities=17%  Similarity=0.165  Sum_probs=65.2

Q ss_pred             ChHHHHHHHHHHHHhhcCcchhhHHhhh------cChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchH--HHHHhcC
Q 036338          204 SVDSRIESLRLLEFIAGDADSKVKIAER------DGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAK--TKLINHK  275 (408)
Q Consensus       204 ~~~~~~~Aa~~L~~La~~~~~~~~i~~~------~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~--~~~~~~G  275 (408)
                      ...-|..|..+|.+|+..+.|-..|..+      +..+..|+++|....++-.++-|.-.|.+|+..+...  ....+.+
T Consensus       137 ~lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  137 PLSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CCCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            4567889999999999888777766531      2356667777776668899999999999999988743  3334799


Q ss_pred             cHHHHHHHhcc
Q 036338          276 LITELGKLITD  286 (408)
Q Consensus       276 ~i~~Lv~lL~~  286 (408)
                      .|..|+..+.+
T Consensus       217 ~i~~Li~FiE~  227 (257)
T PF12031_consen  217 CISHLIAFIED  227 (257)
T ss_pred             hHHHHHHHHHH
Confidence            99999999975

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PLN02195 cellulose synthase A

Probab=85.58  E-value=0.72  Score=50.40  Aligned_cols=45  Identities=9%  Similarity=0.087  Sum_probs=36.4

Q ss_pred             cccCccc-----cCCCceec--CCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338           15 RCPISLD-----VMKSPVSL--CTGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        15 ~Cpi~~~-----~~~dPv~~--~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      .|.||++     .+-+|.+.  .||.-.||.|.+-=-++|+..||+|+..+.
T Consensus         8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk   59 (977)
T PLN02195          8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD   59 (977)
T ss_pred             cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence            6999998     44468776  499999999985446678889999998776

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.30  E-value=0.63  Score=46.29  Aligned_cols=42  Identities=14%  Similarity=0.245  Sum_probs=29.0

Q ss_pred             cccccCccccCCCc----eecCCCCcccHhhHHHHHhc-----CCCCCCCc
Q 036338           13 FFRCPISLDVMKSP----VSLCTGVTYDRASIQRWLDS-----GNNTCPAT   54 (408)
Q Consensus        13 ~~~Cpi~~~~~~dP----v~~~cgh~f~r~cI~~~~~~-----~~~~CP~~   54 (408)
                      ...|.||..-+.++    .+..|||.||..|..++++.     ....||.-
T Consensus       146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~  196 (384)
T KOG1812|consen  146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHD  196 (384)
T ss_pred             cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCC
Confidence            46899999322222    24579999999999999863     22457763

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=84.90  E-value=17  Score=34.01  Aligned_cols=172  Identities=19%  Similarity=0.145  Sum_probs=98.1

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCCh-HHHHHHHhhcCc---chhhHHHHHHHHHHhccccc
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGL-VVMLVEILSNVN---DVNMLKQVIRVLDLILNKIE  175 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~-i~~Lv~lL~s~~---~~~~~e~A~~~L~~L~~~~~  175 (408)
                      .+..++..+.+-..+ +.-++.-+|-++. ++..-..+...++. ...+..++....   ....+--++++|.|+..  +
T Consensus        64 ~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~--~  140 (268)
T PF08324_consen   64 WLILLLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFS--H  140 (268)
T ss_dssp             HHHHHHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTT--S
T ss_pred             HHHHHHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhC--C
Confidence            344445555554444 6667777766655 45555566554233 455666665543   23334668899999876  4


Q ss_pred             chHHHHHHHhccCcc-cHHHHHHHHhcCC---ChHHHHHHHHHHHHhhcCcc-hh--hHHhhhcChHHHHHHhc-ccCCC
Q 036338          176 DQQHLMNLILKRDQD-CLNSLLLVLKQQE---SVDSRIESLRLLEFIAGDAD-SK--VKIAERDGLLAETVKSL-SLDSD  247 (408)
Q Consensus       176 ~~~~~~~~i~~~~~g-~i~~Lv~lL~~~~---~~~~~~~Aa~~L~~La~~~~-~~--~~i~~~~g~i~~Lv~lL-~~~~~  247 (408)
                      ...  +..+. ...+ .+...+..+....   +...|..++.++.|++..-. .+  ....  ...+..+++.+ ....+
T Consensus       141 ~~~--~~~~~-~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~--~~ll~~i~~~~~~~~~d  215 (268)
T PF08324_consen  141 PPG--RQLLL-SHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ--SELLSSIIEVLSREESD  215 (268)
T ss_dssp             CCC--HHHHH-CTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH--HHHHHHHHHHCHCCHTS
T ss_pred             Ccc--HHHHH-hcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH--HHHHHHHHHHhccccCC
Confidence            444  44443 1233 3333333333221   46788899999999985321 11  1111  12456666633 33358


Q ss_pred             HHHHHHHHHHHHHhccCcchHHHHHh-cCcHHHH
Q 036338          248 RRLIEASLSCLITISSSKRAKTKLIN-HKLITEL  280 (408)
Q Consensus       248 ~~~~~~A~~aL~~Ls~~~~n~~~~~~-~G~i~~L  280 (408)
                      +++.-.++-||.+|...+.....+.. .|+-..+
T Consensus       216 ~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~  249 (268)
T PF08324_consen  216 EEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVL  249 (268)
T ss_dssp             HHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHhccChhHHHHHHHcChHHHH
Confidence            89999999999999987777777665 3443333

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.84  E-value=30  Score=36.79  Aligned_cols=87  Identities=15%  Similarity=0.191  Sum_probs=65.2

Q ss_pred             ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHH
Q 036338          190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKT  269 (408)
Q Consensus       190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~  269 (408)
                      .++..|-.+|.+. ....|--|..-+..|+........+-. .  .+.++..|+...|..+++.|+..||.+|.. +|.+
T Consensus       329 ~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~s~davK~-h--~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak  403 (938)
T KOG1077|consen  329 RAVNQLGQFLSHR-ETNIRYLALESMCKLASSEFSIDAVKK-H--QDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAK  403 (938)
T ss_pred             HHHHHHHHHhhcc-cccchhhhHHHHHHHHhccchHHHHHH-H--HHHHHHHhccccchHHHHHHHHHHHHHhch-hhHH
Confidence            4567777777776 677788888888888877666666654 3  688889999656889999999999999975 3555


Q ss_pred             HHHhcCcHHHHHHHhcc
Q 036338          270 KLINHKLITELGKLITD  286 (408)
Q Consensus       270 ~~~~~G~i~~Lv~lL~~  286 (408)
                      .||     .-|++.|.+
T Consensus       404 ~IV-----~elLqYL~t  415 (938)
T KOG1077|consen  404 QIV-----AELLQYLET  415 (938)
T ss_pred             HHH-----HHHHHHHhh
Confidence            555     447777764

>PLN02189 cellulose synthase

Probab=84.81  E-value=0.7  Score=50.80  Aligned_cols=46  Identities=20%  Similarity=0.309  Sum_probs=36.7

Q ss_pred             ccccCccccCC-----CceecC--CCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338           14 FRCPISLDVMK-----SPVSLC--TGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        14 ~~Cpi~~~~~~-----dPv~~~--cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      -.|+||++-.-     +|.+.+  ||.-.||.|.|-=.++|+..||+|+..+.
T Consensus        35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~   87 (1040)
T PLN02189         35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK   87 (1040)
T ss_pred             ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence            38999998643     476663  99999999996556778899999997654

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.75  E-value=32  Score=38.62  Aligned_cols=177  Identities=16%  Similarity=0.162  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHhhhCh-hhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcc--cccchHHHHHHHhccCcccH
Q 036338          116 FSENLTKIVAFAKESD-ENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILN--KIEDQQHLMNLILKRDQDCL  192 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~-~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~--~~~~~~~~~~~i~~~~~g~i  192 (408)
                      +..++.+|..+.+..+ ++...+.+.   ||-++-+++..+ ....+.|...|..+..  ...++..=+      ..-.|
T Consensus       714 ~~~rl~~L~~L~~~~~~e~~~~i~k~---I~EvIL~~Ke~n-~~aR~~Af~lL~~i~~i~~~~d~g~e~------~~~~l  783 (1176)
T KOG1248|consen  714 QASRLKCLKRLLKLLSAEHCDLIPKL---IPEVILSLKEVN-VKARRNAFALLVFIGAIQSSLDDGNEP------ASAIL  783 (1176)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHH---HHHHHHhccccc-HHHHhhHHHHHHHHHHHHhhhcccccc------hHHHH
Confidence            7777777777776655 444444443   444454444443 3333788888877762  000100000      01256


Q ss_pred             HHHHHHHhcCC-ChHHHHHHHHHHHHhhc-CcchhhHHhh--hcChHHHHHHhcccCCCHHHHHHHHHHHHHhccC-cch
Q 036338          193 NSLLLVLKQQE-SVDSRIESLRLLEFIAG-DADSKVKIAE--RDGLLAETVKSLSLDSDRRLIEASLSCLITISSS-KRA  267 (408)
Q Consensus       193 ~~Lv~lL~~~~-~~~~~~~Aa~~L~~La~-~~~~~~~i~~--~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~-~~n  267 (408)
                      ..++..+.-|- ..+.+..+.. |..+.. ..+.+..+..  ..+.+..+..+|.+. +++.+++|.+++.-++.. ++.
T Consensus       784 nefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~  861 (1176)
T KOG1248|consen  784 NEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEE  861 (1176)
T ss_pred             HHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHH
Confidence            66666665431 2233333332 332221 1122222211  134555555566665 999999999999998875 333


Q ss_pred             HHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          268 KTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       268 ~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      ...--..-.+|.+..++.+.                     ...++.+....|..|..
T Consensus       862 ~l~~~~~~LL~sll~ls~d~---------------------k~~~r~Kvr~LlekLir  898 (1176)
T KOG1248|consen  862 CLSPHLEELLPSLLALSHDH---------------------KIKVRKKVRLLLEKLIR  898 (1176)
T ss_pred             HHhhhHHHHHHHHHHHHHhh---------------------hHHHHHHHHHHHHHHHH
Confidence            33333444778888877653                     56777777778888765

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=84.65  E-value=15  Score=39.35  Aligned_cols=155  Identities=15%  Similarity=0.096  Sum_probs=97.1

Q ss_pred             ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338          142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD  221 (408)
Q Consensus       142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~  221 (408)
                      ..++++.+.+.+....-..-+++.+|.||+.  .++.. |..|.  +.-+++.+-.++... ++-.|..++..+.||...
T Consensus       541 ~v~~~~~s~~~~d~~~~en~E~L~altnLas--~s~s~-r~~i~--ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~  614 (748)
T KOG4151|consen  541 EVVKPLDSALHNDEKGLENFEALEALTNLAS--ISESD-RQKIL--KEKALGKIEELMTEE-NPALQRAALESIINLLWS  614 (748)
T ss_pred             hhhhhhcchhhhhHHHHHHHHHHHHhhcccC--cchhh-HHHHH--HHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhh
Confidence            4455555555544411123678889999986  44333 44455  555555555555555 788889999999999887


Q ss_pred             cc-hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHH-HH-hcCcHHHHHHHhccCCCCCCCCCCCC
Q 036338          222 AD-SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTK-LI-NHKLITELGKLITDGHNGNGSGNGNG  298 (408)
Q Consensus       222 ~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~-~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~  298 (408)
                      +. ....+++-....+.....+... +.....++++++..+....+|.-. +. -......++.++.+.           
T Consensus       615 ~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-----------  682 (748)
T KOG4151|consen  615 PLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-----------  682 (748)
T ss_pred             HHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-----------
Confidence            75 5566665344567666666664 666777788888766665554332 33 345666777777653           


Q ss_pred             CCCCCCCCCCCcchHHHHHHHHHHHh
Q 036338          299 NGNGNGSGNGTVLITEKALRLVEILS  324 (408)
Q Consensus       299 ~~~~~~~~~~~~~~~~~a~~~L~~L~  324 (408)
                                +..++...+....|+.
T Consensus       683 ----------~~~~qhrgl~~~ln~~  698 (748)
T KOG4151|consen  683 ----------DDEIQHRGLVIILNLF  698 (748)
T ss_pred             ----------hhhhhhhhhhhhhhHH
Confidence                      6667766666666643

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=84.17  E-value=51  Score=35.45  Aligned_cols=142  Identities=14%  Similarity=0.089  Sum_probs=86.1

Q ss_pred             hChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHH-HhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHH
Q 036338          129 ESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLD-LILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDS  207 (408)
Q Consensus       129 ~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~-~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~  207 (408)
                      ....-+...++. |+...|+++..... ......+..+|. .+..   ..+   .     ....++++...+.+......
T Consensus       492 ~~K~~~~~~Ik~-~~~~aLlrl~~~q~-e~akl~~~~aL~~~i~f---~~~---~-----~~~v~~~~~s~~~~d~~~~e  558 (748)
T KOG4151|consen  492 KEKYERAKKIKP-GGYEALLRLGQQQF-EEAKLKWYHALAGKIDF---PGE---R-----SYEVVKPLDSALHNDEKGLE  558 (748)
T ss_pred             hhHHhcCccccc-cHHHHHHHHHHHhc-hHHHHHHHHHHhhhcCC---CCC---c-----hhhhhhhhcchhhhhHHHHH
Confidence            334556678888 99999999987665 122244444554 3322   111   1     23456677776665411122


Q ss_pred             HHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchH-HHHHh-cCcHHHHHHHh
Q 036338          208 RIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAK-TKLIN-HKLITELGKLI  284 (408)
Q Consensus       208 ~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~-~~~~~-~G~i~~Lv~lL  284 (408)
                      .-.+..++.||+..+ ..|..|.. .-+++.+-.++-+. ++..+++++..+.||..++.-- ..+++ ...++.....+
T Consensus       559 n~E~L~altnLas~s~s~r~~i~k-e~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~  636 (748)
T KOG4151|consen  559 NFEALEALTNLASISESDRQKILK-EKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNL  636 (748)
T ss_pred             HHHHHHHhhcccCcchhhHHHHHH-HhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHH
Confidence            345788888888754 46666765 44555555555554 8899999999999999887643 33344 44455555444


Q ss_pred             c
Q 036338          285 T  285 (408)
Q Consensus       285 ~  285 (408)
                      .
T Consensus       637 e  637 (748)
T KOG4151|consen  637 E  637 (748)
T ss_pred             H
Confidence            3

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.06  E-value=26  Score=37.49  Aligned_cols=169  Identities=14%  Similarity=0.189  Sum_probs=101.3

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH  179 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~  179 (408)
                      ....+.+.++..++. |..++..+..+-   ..+.+...+. |.++.|-.++.+.+ +.++.+|+.+|..+..  .+.+.
T Consensus       122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~---~~~~~~~~~~-gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e--~~~~~  194 (734)
T KOG1061|consen  122 LCDPLLKCLKDDDPYVRKTAAVCVAKLF---DIDPDLVEDS-GLVDALKDLLSDSN-PMVVANALAALSEIHE--SHPSV  194 (734)
T ss_pred             HHHHHHHhccCCChhHHHHHHHHHHHhh---cCChhhcccc-chhHHHHHHhcCCC-chHHHHHHHHHHHHHH--hCCCC
Confidence            345666677777766 777777766663   3445677788 99999999998443 5567899999988864  12110


Q ss_pred             HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338          180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI  259 (408)
Q Consensus       180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~  259 (408)
                       .....  ..-.+..++   ... +...-..-+.+|..++..-....  .+....+..+...|.+. ++.+.-.+..+++
T Consensus       195 -~~~~l--~~~~~~~lL---~al-~ec~EW~qi~IL~~l~~y~p~d~--~ea~~i~~r~~p~Lqh~-n~avvlsavKv~l  264 (734)
T KOG1061|consen  195 -NLLEL--NPQLINKLL---EAL-NECTEWGQIFILDCLAEYVPKDS--REAEDICERLTPRLQHA-NSAVVLSAVKVIL  264 (734)
T ss_pred             -Ccccc--cHHHHHHHH---HHH-HHhhhhhHHHHHHHHHhcCCCCc--hhHHHHHHHhhhhhccC-CcceEeehHHHHH
Confidence             00000  122222333   333 44444455566666665422111  11123456666677765 6667777888888


Q ss_pred             HhccCcchHHHHHhcCcHHHHHHHhcc
Q 036338          260 TISSSKRAKTKLINHKLITELGKLITD  286 (408)
Q Consensus       260 ~Ls~~~~n~~~~~~~G~i~~Lv~lL~~  286 (408)
                      .+.....+.....-....++|+.++++
T Consensus       265 ~~~~~~~~~~~~~~~K~~~pl~tlls~  291 (734)
T KOG1061|consen  265 QLVKYLKQVNELLFKKVAPPLVTLLSS  291 (734)
T ss_pred             HHHHHHHHHHHHHHHHhcccceeeecc
Confidence            877765555555556677788887765

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=82.69  E-value=42  Score=34.73  Aligned_cols=153  Identities=12%  Similarity=0.232  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc---chhhHHHHHHHHHHhccccc
Q 036338          100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN---DVNMLKQVIRVLDLILNKIE  175 (408)
Q Consensus       100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~---~~~~~e~A~~~L~~L~~~~~  175 (408)
                      .....+.+.+.+++.. |..|++.|..+..+ ...-..++.. .++..|..++.++.   ....+...+.++..+..  +
T Consensus        83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~-~gl~~L~~liedg~~~~~~~~L~~~L~af~elme--h  158 (713)
T KOG2999|consen   83 HYAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRC-SGLELLFSLIEDGRVCMSSELLSTSLRAFSELME--H  158 (713)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhc-chHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh--h
Confidence            4567888899998877 88899999999876 5666667777 78999999998876   22233444455444321  1


Q ss_pred             chHHHHHHHhccCcccHHHHHHHHhcC-CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338          176 DQQHLMNLILKRDQDCLNSLLLVLKQQ-ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS  254 (408)
Q Consensus       176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~-~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A  254 (408)
                      .--. -+.+   ...+|...+.+.... .+..+-..|...|.++....+.........--+..|+..|+.. +......|
T Consensus       159 gvvs-W~~~---~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~-n~~i~~~a  233 (713)
T KOG2999|consen  159 GVVS-WESV---SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS-NQRIQTCA  233 (713)
T ss_pred             ceee-eeec---ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc-chHHHHHH
Confidence            1000 0001   122233333333221 1445667888999999887764444444377899999999986 76777776


Q ss_pred             HHHHHHh
Q 036338          255 LSCLITI  261 (408)
Q Consensus       255 ~~aL~~L  261 (408)
                      ...|-.|
T Consensus       234 ial~nal  240 (713)
T KOG2999|consen  234 IALLNAL  240 (713)
T ss_pred             HHHHHHH
Confidence            5555555

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=82.31  E-value=78  Score=34.18  Aligned_cols=153  Identities=18%  Similarity=0.198  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhCh--hhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338          100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESD--ENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus       100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~--~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      .-+..++..|.+.++. +.+|+..+..++.--.  .--+.+... |.|  |.+.|.... .+++-..+.+|..+... ..
T Consensus       799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~l-Gvv--LyEylgeey-pEvLgsILgAikaI~nv-ig  873 (1172)
T KOG0213|consen  799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHL-GVV--LYEYLGEEY-PEVLGSILGAIKAIVNV-IG  873 (1172)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHh-hHH--HHHhcCccc-HHHHHHHHHHHHHHHHh-cc
Confidence            3445666777777777 8888888877764211  111233333 433  556665544 33333344444333210 11


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      -..+..-    -.+.+|.|.-+|++. ...++++...++..++..........+=..+--.|+++|+.. ..+.+++|..
T Consensus       874 m~km~pP----i~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah-kK~iRRaa~n  947 (1172)
T KOG0213|consen  874 MTKMTPP----IKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH-KKEIRRAAVN  947 (1172)
T ss_pred             ccccCCC----hhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence            1100111    247899999999998 899999999999999976432221111111234588888875 7789999998


Q ss_pred             HHHHhcc
Q 036338          257 CLITISS  263 (408)
Q Consensus       257 aL~~Ls~  263 (408)
                      .+..++.
T Consensus       948 TfG~Iak  954 (1172)
T KOG0213|consen  948 TFGYIAK  954 (1172)
T ss_pred             hhhHHHH
Confidence            8887765

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.09  E-value=47  Score=35.89  Aligned_cols=169  Identities=20%  Similarity=0.226  Sum_probs=101.0

Q ss_pred             HHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHH
Q 036338          104 DIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLM  181 (408)
Q Consensus       104 ~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~  181 (408)
                      .|..+|.+.... +.+|++.|..+........       ...|.+|+-..+.+ +++  ...---|...+.  .+.+  -
T Consensus        39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS-------~~Fp~VVKNVaskn~EVK--kLVyvYLlrYAE--eqpd--L  105 (968)
T KOG1060|consen   39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDVS-------LLFPAVVKNVASKNIEVK--KLVYVYLLRYAE--EQPD--L  105 (968)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhcCCcHH-------HHHHHHHHHhhccCHHHH--HHHHHHHHHHhh--cCCC--c
Confidence            366777776554 8999998877754433322       45667788877766 333  333222333332  1111  1


Q ss_pred             HHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 036338          182 NLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI  261 (408)
Q Consensus       182 ~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L  261 (408)
                      .++      -|..+=+-|+.+ +..+|..|.++|..+-      ..+.. .=++-++-+...+. ++-+|+.|+.||-.|
T Consensus       106 ALL------SIntfQk~L~Dp-N~LiRasALRvlSsIR------vp~Ia-PI~llAIk~~~~D~-s~yVRk~AA~AIpKL  170 (968)
T KOG1060|consen  106 ALL------SINTFQKALKDP-NQLIRASALRVLSSIR------VPMIA-PIMLLAIKKAVTDP-SPYVRKTAAHAIPKL  170 (968)
T ss_pred             eee------eHHHHHhhhcCC-cHHHHHHHHHHHHhcc------hhhHH-HHHHHHHHHHhcCC-cHHHHHHHHHhhHHH
Confidence            122      366777778888 9999987777766542      22222 11223333455565 889999999999988


Q ss_pred             ccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          262 SSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       262 s~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      =+-+.+....    .+..+=.||.+                     .++.+...|+.+....|-
T Consensus       171 YsLd~e~k~q----L~e~I~~LLaD---------------------~splVvgsAv~AF~evCP  209 (968)
T KOG1060|consen  171 YSLDPEQKDQ----LEEVIKKLLAD---------------------RSPLVVGSAVMAFEEVCP  209 (968)
T ss_pred             hcCChhhHHH----HHHHHHHHhcC---------------------CCCcchhHHHHHHHHhch
Confidence            6654433321    23445556654                     378888888888887763

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=82.07  E-value=36  Score=34.63  Aligned_cols=130  Identities=17%  Similarity=0.151  Sum_probs=89.2

Q ss_pred             HHHHHhcCChh-HHHHHHHHHHHhhhCh---hhhhhhhhcCChHHHHHHHhhcCc------chhhHHHHHHHHHHhcccc
Q 036338          105 IIRVAISKNED-FSENLTKIVAFAKESD---ENKTFLAKFDGLVVMLVEILSNVN------DVNMLKQVIRVLDLILNKI  174 (408)
Q Consensus       105 Lv~~L~s~~~~-~~~Al~~L~~la~~~~---~~r~~i~~~~G~i~~Lv~lL~s~~------~~~~~e~A~~~L~~L~~~~  174 (408)
                      +...++..+.+ |..|+--.-.+++.++   .+|+.+-++ =+.+.+=++|.+.+      +.-...-++.+|..++.  
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeA-VGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~--   92 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEA-VGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR--   92 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHH-hccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC--
Confidence            44555554444 8889988888887644   467788888 77899999997755      11123446677777775  


Q ss_pred             cchHH-HHHHHhccCcccHHHHHHHHhcCCChH------HHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc
Q 036338          175 EDQQH-LMNLILKRDQDCLNSLLLVLKQQESVD------SRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS  243 (408)
Q Consensus       175 ~~~~~-~~~~i~~~~~g~i~~Lv~lL~~~~~~~------~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~  243 (408)
                       +++- .+..++    ..||.|...+..+.+++      +-+.+-..|..++..+.....+.. .|+++.+-++-.
T Consensus        93 -~pElAsh~~~v----~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~~~~~Q~y~  162 (698)
T KOG2611|consen   93 -VPELASHEEMV----SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIA-SGGLRVIAQMYE  162 (698)
T ss_pred             -ChhhccCHHHH----HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHh-cCchHHHHHHHh
Confidence             3331 122232    56899999998754544      567788889999988777777766 789998887654

>PLN02436 cellulose synthase A

Probab=82.02  E-value=1.1  Score=49.51  Aligned_cols=46  Identities=22%  Similarity=0.374  Sum_probs=36.6

Q ss_pred             ccccCccccC-----CCceecC--CCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338           14 FRCPISLDVM-----KSPVSLC--TGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        14 ~~Cpi~~~~~-----~dPv~~~--cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      -.|.||++-.     -+|.+.+  ||.-.||.|.+-=.++|+..||+|+..+.
T Consensus        37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~   89 (1094)
T PLN02436         37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK   89 (1094)
T ss_pred             ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence            3899999863     3477764  99999999996556778889999997754

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit

Probab=81.73  E-value=0.97  Score=49.91  Aligned_cols=46  Identities=20%  Similarity=0.252  Sum_probs=36.1

Q ss_pred             ccccCcccc-----CCCceec--CCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338           14 FRCPISLDV-----MKSPVSL--CTGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        14 ~~Cpi~~~~-----~~dPv~~--~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      -.|.||++-     .-+|.+.  .||.-.||.|.|-=.++|+..||+|+..+.
T Consensus        18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk   70 (1079)
T PLN02638         18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK   70 (1079)
T ss_pred             ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence            389999986     3347776  499999999985556778899999987654

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=81.58  E-value=20  Score=33.52  Aligned_cols=105  Identities=18%  Similarity=0.157  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHH
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSL  195 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~L  195 (408)
                      +-.|+..|++.-.+            .+|-.|++-|..++ .-.+.++..+|+.|-                ..-+|+.|
T Consensus       173 Ry~amF~LRn~g~E------------eaI~al~~~l~~~S-alfrhEvAfVfGQl~----------------s~~ai~~L  223 (289)
T KOG0567|consen  173 RYRAMFYLRNIGTE------------EAINALIDGLADDS-ALFRHEVAFVFGQLQ----------------SPAAIPSL  223 (289)
T ss_pred             HHhhhhHhhccCcH------------HHHHHHHHhcccch-HHHHHHHHHHHhhcc----------------chhhhHHH
Confidence            55677777765332            22333343333332 212366666666542                33457777


Q ss_pred             HHHHhc-CCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 036338          196 LLVLKQ-QESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI  261 (408)
Q Consensus       196 v~lL~~-~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L  261 (408)
                      .+.|.. ..++.+|..|+.+|+.++          . ...++.|.+++.+. ++-+++.+.-||--+
T Consensus       224 ~k~L~d~~E~pMVRhEaAeALGaIa----------~-e~~~~vL~e~~~D~-~~vv~esc~valdm~  278 (289)
T KOG0567|consen  224 IKVLLDETEHPMVRHEAAEALGAIA----------D-EDCVEVLKEYLGDE-ERVVRESCEVALDML  278 (289)
T ss_pred             HHHHHhhhcchHHHHHHHHHHHhhc----------C-HHHHHHHHHHcCCc-HHHHHHHHHHHHHHH
Confidence            777764 237889999999999876          2 45688888999886 666666666666543

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=81.58  E-value=0.67  Score=32.14  Aligned_cols=38  Identities=16%  Similarity=0.263  Sum_probs=23.2

Q ss_pred             CcccccCccccCCCceecCCCCcccHhhHHHHHhc-CCCCCCCccc
Q 036338           12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS-GNNTCPATMQ   56 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~-~~~~CP~~~~   56 (408)
                      +.|.||.|++.|...       .+.+-+.++...+ ....||+|..
T Consensus         1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~   39 (54)
T PF05605_consen    1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS   39 (54)
T ss_pred             CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence            468999998844432       2444554444333 3467999975

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF04641 Rtf2: Rtf2 RING-finger

Probab=81.06  E-value=1.2  Score=41.77  Aligned_cols=34  Identities=21%  Similarity=0.480  Sum_probs=30.5

Q ss_pred             cccccCccccCCCceec-CCCCcccHhhHHHHHhc
Q 036338           13 FFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDS   46 (408)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~   46 (408)
                      -..|+|+++.|.+||+. .-|+-|.++.|-+|+-.
T Consensus        34 w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~   68 (260)
T PF04641_consen   34 WTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLD   68 (260)
T ss_pred             cCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHh
Confidence            46899999999999976 59999999999999854

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=80.64  E-value=62  Score=36.19  Aligned_cols=192  Identities=11%  Similarity=0.020  Sum_probs=112.4

Q ss_pred             HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHH
Q 036338          102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHL  180 (408)
Q Consensus       102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~  180 (408)
                      +..|++.++..+.. +-.|++.+..++...+   ..+++  -+|...++++...++...-..|+.+|+.|+.        
T Consensus       343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad--~vi~svid~~~p~e~~~aWHgacLaLAELA~--------  409 (1133)
T KOG1943|consen  343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD--QVIGSVIDLFNPAEDDSAWHGACLALAELAL--------  409 (1133)
T ss_pred             HHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH--HHHHHHHHhcCcCCchhHHHHHHHHHHHHHh--------
Confidence            44455555555656 7789999999988766   33443  3566677755444333344677778887775        


Q ss_pred             HHHHhc-cCcccHHHHHHHHhc----C---CChHHHHHHHHHHHHhhcCcchh--hHHhhhcChHHH-HHHhcccCCCHH
Q 036338          181 MNLILK-RDQDCLNSLLLVLKQ----Q---ESVDSRIESLRLLEFIAGDADSK--VKIAERDGLLAE-TVKSLSLDSDRR  249 (408)
Q Consensus       181 ~~~i~~-~~~g~i~~Lv~lL~~----~---~~~~~~~~Aa~~L~~La~~~~~~--~~i~~~~g~i~~-Lv~lL~~~~~~~  249 (408)
                      +.++.- .=..++|.+++-|..    |   ....+|..|+.+++.++...+..  +-+..  ..... |..-+-+. +..
T Consensus       410 rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~--~L~s~LL~~AlFDr-evn  486 (1133)
T KOG1943|consen  410 RGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ--SLASALLIVALFDR-EVN  486 (1133)
T ss_pred             cCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH--HHHHHHHHHHhcCc-hhh
Confidence            222210 001345555555532    1   13568889999999888654322  11211  12222 23333344 678


Q ss_pred             HHHHHHHHHHHhccCcc---------------------h-----HHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCC
Q 036338          250 LIEASLSCLITISSSKR---------------------A-----KTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNG  302 (408)
Q Consensus       250 ~~~~A~~aL~~Ls~~~~---------------------n-----~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~  302 (408)
                      ++++|..||-....-..                     |     ...+.+ .|...++++.|-..               
T Consensus       487 cRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~---------------  551 (1133)
T KOG1943|consen  487 CRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTK---------------  551 (1133)
T ss_pred             HhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhc---------------
Confidence            99999999987642211                     1     122332 56677777766431               


Q ss_pred             CCCCCCCcchHHHHHHHHHHHhC
Q 036338          303 NGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       303 ~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                       .-...|..+++.++.+|.+|+.
T Consensus       552 -Kv~HWd~~irelaa~aL~~Ls~  573 (1133)
T KOG1943|consen  552 -KVCHWDVKIRELAAYALHKLSL  573 (1133)
T ss_pred             -ccccccHHHHHHHHHHHHHHHH
Confidence             1225789999999999999875

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=80.42  E-value=39  Score=35.80  Aligned_cols=80  Identities=13%  Similarity=0.087  Sum_probs=52.5

Q ss_pred             cccHHHHHHHHh----cCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccC--CCHHHHHHHHHHHHHhc
Q 036338          189 QDCLNSLLLVLK----QQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLD--SDRRLIEASLSCLITIS  262 (408)
Q Consensus       189 ~g~i~~Lv~lL~----~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~~A~~aL~~Ls  262 (408)
                      .-.++.|...|.    .+ +.+.+.-+..+|+|+.          . ...++.|..++...  .+..++-+|++||+.+.
T Consensus       485 ~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g----------~-~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~  552 (618)
T PF01347_consen  485 EKYVPYLEQELKEAVSRG-DEEEKIVYLKALGNLG----------H-PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLA  552 (618)
T ss_dssp             GGGTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG
T ss_pred             HHHHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccC----------C-chhhHHHHhHhhhccccchHHHHHHHHHHHHHh
Confidence            355677776666    34 6677888889998875          2 34678888888754  35688889999999885


Q ss_pred             cCcchHHHHHhcCcHHHHHHHhccC
Q 036338          263 SSKRAKTKLINHKLITELGKLITDG  287 (408)
Q Consensus       263 ~~~~n~~~~~~~G~i~~Lv~lL~~~  287 (408)
                      ....+.       +.+.|+.++.+.
T Consensus       553 ~~~~~~-------v~~~l~~I~~n~  570 (618)
T PF01347_consen  553 KHCPEK-------VREILLPIFMNT  570 (618)
T ss_dssp             GT-HHH-------HHHHHHHHHH-T
T ss_pred             hcCcHH-------HHHHHHHHhcCC
Confidence            543322       346677777764

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=80.11  E-value=75  Score=33.68  Aligned_cols=162  Identities=18%  Similarity=0.175  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhh---hcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccH
Q 036338          116 FSENLTKIVAFAKESDENKTFLA---KFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCL  192 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~---~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i  192 (408)
                      +.-|+..||.++..+..+-..+-   .. ..+..++..+..  ++..+-.++..|.|+..  +...  ++.+.....-.+
T Consensus       561 ~fPalDilRl~v~h~~~~s~~~~~~~~~-~~~~~li~~~~~--~~an~ll~vR~L~N~f~--~~~g--~~~~~s~~~~i~  633 (745)
T KOG0301|consen  561 MFPALDILRLAVKHHSSNSLFCDREEGQ-NLVGTLIPILNA--DPANQLLVVRCLANLFS--NPAG--RELFMSRLESIL  633 (745)
T ss_pred             hhhHHHHHHHHHhccchhhhhhhhhhhh-HHHHhhhccccc--chhHHHHHHHHHHHhcc--CHHH--HHHHHHHHHHHh
Confidence            55577777777665433322222   12 233344444431  23334678889999876  4333  444431111122


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhc--CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHH
Q 036338          193 NSLLLVLKQQESVDSRIESLRLLEFIAG--DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTK  270 (408)
Q Consensus       193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~  270 (408)
                      ..++. .+++.+...+...+....|++.  ..++-+ +...+-....+..+++.-.+.++.=.++.||.+|+..+.+..+
T Consensus       634 ~~~~~-~~s~~~knl~ia~atlaln~sv~l~~~~~~-~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~  711 (745)
T KOG0301|consen  634 DPVIE-ASSLSNKNLQIALATLALNYSVLLIQDNEQ-LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ  711 (745)
T ss_pred             hhhhh-hhcccchhHHHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH
Confidence            22222 2333245566555555555553  222211 2110112222233333222445666788899999999989999


Q ss_pred             HHhcCcHHHHHHHhcc
Q 036338          271 LINHKLITELGKLITD  286 (408)
Q Consensus       271 ~~~~G~i~~Lv~lL~~  286 (408)
                      +...-.|..++.-+++
T Consensus       712 ~A~~~~v~sia~~~~~  727 (745)
T KOG0301|consen  712 LAKNRSVDSIAKKLKE  727 (745)
T ss_pred             HHHhcCHHHHHHHHHH
Confidence            9887788888888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	408
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		6e-18
2c2v_S	78	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		7e-04

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/69 (50%), Positives = 49/69 (71%)
Query: 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQ 70
          P +FRCPISL++MK PV + TG TY+R+SIQ+WLD+G+ TCP + + L      PN  L+
Sbjct: 6  PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 71 RLIQIWSDS 79
           LI +W +S
Sbjct: 66 SLIALWCES 74

>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTL 69
          +P +    IS ++M+ P    +G+TYDR  I+  L    +  P T   L  ++ +PN  +
Sbjct: 2  IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 61
Query: 70 QRLI 73
          + +I
Sbjct: 62 KEVI 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	408
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	4e-36
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	2e-31
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	6e-27
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	2e-26
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	5e-24
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	2e-19
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	1e-17
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	3e-13
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-13
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-08
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-08
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	2e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	9e-08
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-07
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	2e-07
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	2e-07
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	5e-07
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	2e-06
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	1e-05
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	1e-05
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	1e-05
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-05
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	2e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	1e-04
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	2e-04
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	2e-04
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	3e-04
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	5e-04
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	6e-04

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  126 bits (318), Expect = 4e-36
 Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 2/76 (2%)

Query: 10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTL 69
           P +FRCPISL++MK PV + TG TY+R+SIQ+WLD+G+ TCP + + L      PN  L
Sbjct: 5  FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 70 QRLIQIWSDSVQHRVD 85
          + LI +W +   + ++
Sbjct: 65 KSLIALWCE--SNGIE 78

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  117 bits (293), Expect = 2e-31
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 10  VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTL 69
           +P +    IS ++M+ P    +G+TYDR  I+  L    +  P T   L   + +PN  +
Sbjct: 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 162

Query: 70  QRLIQIW 76
           + +I  +
Sbjct: 163 KEVIDAF 169

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score =  101 bits (254), Expect = 6e-27
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 3  RDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE 62
           +  Y   P  FR P+   +M  PV L +G   DR+ I R L + + T P   Q+L    
Sbjct: 4  AEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESM 62

Query: 63 FVPNRTLQRLIQIW 76
            P   L+  IQ W
Sbjct: 63 LEPVPELKEQIQAW 76

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score =  100 bits (251), Expect = 2e-26
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 4  DDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF 63
          +  Y   P  FR P+   +M  PV L +G   DR+ I R L + + T P   Q L     
Sbjct: 20 EIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESML 78

Query: 64 VPNRTLQRLIQIW 76
           P   L+  IQ W
Sbjct: 79 EPVPELKEQIQAW 91

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score = 94.5 bits (235), Expect = 5e-24
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 4  DDLYITVPSFFRCPISLDVMKSPVSLCTG-VTYDRASIQRWLDSGNNTCPATMQVLQSKE 62
          ++ Y      F  PI   +M  PV L +  VT DR++I R L S   T P     L   +
Sbjct: 13 EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-QTDPFNRSPLTMDQ 71

Query: 63 FVPNRTLQRLIQIWSDSVQHRVDSSESA 90
            PN  L+  IQ W    + +  S  S+
Sbjct: 72 IRPNTELKEKIQRWLA--ERKQQSGPSS 97

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 81.5 bits (201), Expect = 2e-19
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 14 FRCPISLDVMKSPV-SLCTGVTYDRASIQRWLDS-----GNNTCPAT---MQVLQSKEFV 64
          F CPI+ + MK PV +   G TY+  +I R ++S         CP        ++  + +
Sbjct: 8  FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67

Query: 65 PNRTLQRLIQIWSDSVQHRVDSSESA 90
           +  L+R I+  +       +S  S+
Sbjct: 68 QDEALRRAIENHNKKRHRHSESGPSS 93

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score = 84.4 bits (208), Expect = 1e-17
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 1   MVRDDLYITVPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59
              D  Y  VP  F  P+   +MK PV L  + +  DR++I+  L S ++T P     L+
Sbjct: 879 EEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLK 937

Query: 60  SKEFVPNRTLQRLIQIWSDSVQHRVDSSESAT 91
            ++  PN  L++ I  +    Q + ++   A+
Sbjct: 938 LEDVTPNEELRQKILCFKK--QKKEEAKHKAS 967

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 68.4 bits (166), Expect = 3e-13
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 4   DDLYITVPSF-FRCPISLDVMKSPV-SLCTGVTYDRASIQRWLDSGNN-TCPAT--MQVL 58
           DDL I        CPI+    ++P+ S      +DR  IQ +L       CP     QV+
Sbjct: 171 DDLQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV 230

Query: 59  QSKEFVPNRTLQRLIQIWSDSVQHRVDSSESA 90
             ++FV +  ++   +I         D   S 
Sbjct: 231 SMRDFVRDPIMELRCKIAKMKESQEQDKRSSQ 262

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 18/73 (24%), Positives = 34/73 (46%)

Query: 4   DDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF 63
                 +P +    IS ++M+ P    +G+TYDR  I+  L    +  P T   L  ++ 
Sbjct: 199 KRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL 258

Query: 64  VPNRTLQRLIQIW 76
           +PN  ++ +I  +
Sbjct: 259 IPNLAMKEVIDAF 271

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 57.4 bits (139), Expect = 4e-11
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 12 SFFRCPISLDVMKSPV-SLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRT 68
          S   C IS  V + PV S  +   ++++ +++++       P T + L  +E V    
Sbjct: 2  SHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 6e-09
 Identities = 45/239 (18%), Positives = 76/239 (31%), Gaps = 81/239 (33%)

Query: 43  WLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEV 102
           WL+  N  C +   VL+         LQ+L+     +   R D S +     + L    +
Sbjct: 186 WLNLKN--CNSPETVLE--------MLQKLLYQIDPNWTSRSDHSSN-----IKLRIHSI 230

Query: 103 KDIIRVAISKNEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQ 162
           +  +R  + K++ +   L                L            +L NV +     +
Sbjct: 231 QAELRRLL-KSKPYENCL----------------L------------VLLNVQN----AK 257

Query: 163 VIRVLDLILN-KIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRI------ESLRLL 215
                +  L+ KI        L+  R +   + L        S+D         E   LL
Sbjct: 258 AWNAFN--LSCKI--------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 216 EFIAGDADSKVK-------------IAE--RDGL-LAETVKSLSLDSDRRLIEASLSCL 258
                     +              IAE  RDGL   +  K ++ D    +IE+SL+ L
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 5e-08
 Identities = 57/393 (14%), Positives = 133/393 (33%), Gaps = 101/393 (25%)

Query: 70  QRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNED---------FSENL 120
           + ++ ++ D+     D  +       +LS++E+  II   +SK+                
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII---MSKDAVSGTLRLFWTLLSKQ 75

Query: 121 TKIVA-FAKESDE-NKTFLA-KF-------DGLVVMLVEILSNV-NDVNMLKQ--VIR-- 165
            ++V  F +E    N  FL             +  M +E    + ND  +  +  V R  
Sbjct: 76  EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 166 -VLDLILNKIEDQQHLMNLIL-------K--------RD---QDCLNSLL--LVLKQQES 204
             L L    + + +   N+++       K             Q  ++  +  L LK   S
Sbjct: 136 PYLKLR-QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 205 VDSRIESL-RLLEFIAGDADSKVKIAERDGLLAETVKS---------------LSLD--S 246
            ++ +E L +LL  I  +  S+   +    L   ++++               L L    
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 247 DRRLIEA-SLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGS 305
           + +   A +LSC          K       L+T   K +TD  +   + + + + +    
Sbjct: 255 NAKAWNAFNLSC----------KI------LLTTRFKQVTDFLSAATTTHISLDHHSMT- 297

Query: 306 GNGTVLITEKALRLV-EILSTTKQG-RMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTK 363
                L  ++   L+ + L    Q    E+         ++ + ++   + +++ +    
Sbjct: 298 -----LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR---DGLATWDNWKH 349

Query: 364 ILLLMQSNCTPAVRQMSADLLK--IFRVNYKSC 394
           +     +     + + S ++L+   +R  +   
Sbjct: 350 VNCDKLTT----IIESSLNVLEPAEYRKMFDRL 378

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 14  FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSK-EFVPNRTLQRL 72
           F+C    +++  P++        +  + R   +   +CPA    L        N+ LQ +
Sbjct: 53  FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTV 112

Query: 73  IQ 74
           + 
Sbjct: 113 LN 114

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 9  TVPSFFRCPISLDVMKSPVSL--CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN 66
          T+    RC I  +     + +  C    Y    I+++L S    CP     +   +   N
Sbjct: 18 TIDDLLRCGICFEYFNIAMIIPQC-SHNYCSLCIRKFL-SYKTQCPTCCVTVTEPDLKNN 75

Query: 67 RTLQRLIQIWSDSVQHRVDSSESA 90
          R L  L++  + +  H +  +  +
Sbjct: 76 RILDELVKSLNFARNHLLQFALES 99

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 10 VPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLD-SGNNTCPATMQVLQSK-EFVPN 66
          +P    C I  D+M   V + C G +Y    I+  L  S  +TCP   Q   S    + N
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69

Query: 67 RTLQRLIQ 74
          + L++ + 
Sbjct: 70 KFLRQAVN 77

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 49.1 bits (117), Expect = 9e-08
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 9  TVPSFFRCPISLDVMKSPVSLCT-GVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNR 67
          ++   FRC I ++ ++              + I+RWL      CP     LQ +E V  R
Sbjct: 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR 77

Query: 68 TLQRLIQ 74
            + + Q
Sbjct: 78 WAEEVTQ 84

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 14  FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSK-EFVPNRTLQRL 72
           F C    +++  PV+        +  +QR   +   +CPA    L      +PN  LQ L
Sbjct: 79  FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTL 138

Query: 73  I-QIWSDSVQHR 83
           +   +    + R
Sbjct: 139 LDLFFPGYSKGR 150

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 15/65 (23%), Positives = 29/65 (44%)

Query: 9  TVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRT 68
           + S + CPI L  ++  V    G  + +A I + +    + CP   ++L   +  P+  
Sbjct: 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNF 73

Query: 69 LQRLI 73
           +R I
Sbjct: 74 AKREI 78

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 14  FRCPISLDVMKSPVSL--CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE-FVPNRTLQ 70
             CPI LD++K+ ++   C    +    I   L SGN  CP   + L SK    P+    
Sbjct: 55  LMCPICLDMLKNTMTTKEC-LHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFD 113

Query: 71  RLIQ 74
            LI 
Sbjct: 114 ALIS 117

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCP-------ATMQVLQSKEFVPN 66
           +C I ++++  PV+L    T  +   Q  ++  +  CP       +  +    +  + N
Sbjct: 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVN 75

Query: 67 RTLQRLIQIW-SDSVQHRVDSSES 89
            L  +IQ       + R    ES
Sbjct: 76 VELWTIIQKHYPRECKLRASGQES 99

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 14 FRCPISLDVMKSPVSL--CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQR 71
           RC    ++++ PV L  C    +    +   + +G   CP        ++   NR L  
Sbjct: 23 LRCSRCTNILREPVCLGGC-EHIFCSNCVSDCIGTG---CPVCYTPAWIQDLKINRQLDS 78

Query: 72 LIQIWSDSVQHRVDSSES 89
          +IQ+ S       D+  S
Sbjct: 79 MIQLCSKLRNLLHDNELS 96

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 15/65 (23%), Positives = 29/65 (44%)

Query: 9  TVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRT 68
           + S + CPI L  ++  V    G  + +A I + +    + CP   ++L   +  P+  
Sbjct: 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNF 73

Query: 69 LQRLI 73
           +R I
Sbjct: 74 AKREI 78

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNT-----CPATMQVLQSKEFVPNRT 68
            CPI L+++K PVS     ++ RA I    +S  NT     CP            PN  
Sbjct: 20 VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLH 79

Query: 69 LQRLIQ 74
          +  +++
Sbjct: 80 VANIVE 85

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 14 FRCPISLDVMKSPVSLCT-GVTYDRASIQRWLDSGNNTCPATMQVLQSKE----FVPNRT 68
            C +         ++     ++ +  I R+L++ +  CP     +           ++T
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKT 74

Query: 69 LQRLIQ 74
          LQ ++ 
Sbjct: 75 LQDIVY 80

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 10 VPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLD-SGNNTCPATMQVLQSKE 62
          +P    C I  D+M   V + C G +Y    I+  L  S  +TCP   Q   S +
Sbjct: 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 9  TVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE 62
          TV   ++C     V+ SP     G  +  + +   L S +  C A  + +   +
Sbjct: 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 10  VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPA---------TMQVLQS 60
           + + + C    +V++ P     G  Y    +   L SG   C A          + +L+S
Sbjct: 28  LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILES 87

Query: 61  KEFVPNRTLQRLIQ 74
               P+   +R ++
Sbjct: 88  SSAFPDNAARREVE 101

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS------GNNTCPATMQVLQSKEFVPNR 67
            CPI L+++  P+SL  G +  RA I            G ++CP        +    N+
Sbjct: 13 VTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQ 72

Query: 68 TLQRLIQ 74
           L  +++
Sbjct: 73 HLANIVE 79

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFV-PNRTLQRL 72
            C I   ++  PV       + R  I R L    + CP+        +   P ++   +
Sbjct: 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNI 83

Query: 73 IQ 74
          + 
Sbjct: 84 LN 85

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS-----GNNTCPATMQVLQSKEFVPNRT 68
            CPI L+++  P+SL  G ++ +A +           G ++CP      Q +   PNR 
Sbjct: 20 VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRH 79

Query: 69 LQRLIQ 74
          +  +++
Sbjct: 80 VANIVE 85

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 1/39 (2%)

Query: 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCP 52
            C I L     PVSL     +    ++     G   C 
Sbjct: 16 PECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCA 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	408
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.95
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.95
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.94
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.94
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.94
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.93
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.93
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.93
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.93
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.92
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.92
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.92
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.92
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.92
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.91
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.91
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.9
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.88
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.88
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.88
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.88
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.87
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.87
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.87
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.87
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.86
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.86
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.86
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.86
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.86
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.84
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.84
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.84
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.84
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.83
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.83
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.81
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.79
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.76
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.76
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.75
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.74
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.66
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.64
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.63
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.62
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.61
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.59
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.58
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.58
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.57
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.56
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.56
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.55
3grl_A	651	General vesicular transport factor P115; vesicle t	99.55
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.55
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.55
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.55
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.54
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.53
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.53
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.52
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.51
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	99.5
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.5
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.47
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.47
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.46
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.46
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.43
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.4
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.39
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.38
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.36
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.35
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.32
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.3
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.29
3grl_A	651	General vesicular transport factor P115; vesicle t	99.27
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.2
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.2
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.2
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.16
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.15
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.13
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.11
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.11
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.1
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.06
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.05
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.03
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.0
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.98
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.98
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.96
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.93
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.9
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.9
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.89
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.86
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.86
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.81
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.79
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.79
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.74
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.72
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.66
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.65
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.64
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.61
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.44
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.37
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.31
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.3
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.24
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.22
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.12
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.08
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.05
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.02
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.96
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.94
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.94
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.9
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.83
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.79
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	97.71
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.7
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.65
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.6
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.59
1qgr_A	876	Protein (importin beta subunit); transport recepto	97.44
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.39
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.37
1qgr_A	876	Protein (importin beta subunit); transport recepto	97.29
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.24
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.24
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	97.23
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.15
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.12
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	97.11
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.87
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	96.82
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.78
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.71
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	96.66
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.56
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.52
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	96.38
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.25
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	96.25
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.24
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.15
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.88
3nw0_A	238	Non-structural maintenance of chromosomes element	94.93
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	94.73
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	94.0
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	93.39
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	93.38
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	93.29
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	93.05
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	92.95
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	92.6
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	92.53
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	92.32
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	92.06
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	90.86
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	90.86
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	88.77
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	88.67
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	87.69
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	87.28
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	85.47
2x1g_F	971	Cadmus; transport protein, developmental protein,	83.86
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	82.91
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	82.25
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	82.08
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	80.48

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=1.6e-28  Score=239.52  Aligned_cols=244  Identities=16%  Similarity=0.203  Sum_probs=206.1

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcC--------c--chhhHHHHHHHHHHhcccccchHHHHHHHh
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNV--------N--DVNMLKQVIRVLDLILNKIEDQQHLMNLIL  185 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~--------~--~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~  185 (408)
                      +..|++.|.+++.+ +++|..|++. |++++|+.+|.++        +  ...++++|+++|.||+.  ++++. +..|.
T Consensus        49 ~~~A~~aL~nls~d-~e~R~~i~~~-G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~--~~~~~-k~~i~  123 (354)
T 3nmw_A           49 ICPAVCVLMKLSFD-EEHRHAMNEL-GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF--GDVAN-KATLC  123 (354)
T ss_dssp             HHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTS--SCHHH-HHHHH
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHc-CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHc--CCHHH-HHHHH
Confidence            66899999999986 8999999999 9999999999642        1  24466999999999997  55443 66563


Q ss_pred             ccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC--cchhhHHhhhcChHHHHHHhc-ccCCCHHHHHHHHHHHHHhc
Q 036338          186 KRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD--ADSKVKIAERDGLLAETVKSL-SLDSDRRLIEASLSCLITIS  262 (408)
Q Consensus       186 ~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~--~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~A~~aL~~Ls  262 (408)
                       ...|+||.|+++|+++ +.++++.|+++|.+|+..  +++|..|.+ .|+||+||++| +++ +.++++.|+++|+||+
T Consensus       124 -~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs  199 (354)
T 3nmw_A          124 -SMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVK-KESTLKSVLSALWNLS  199 (354)
T ss_dssp             -HCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCCHHHHHHHHH-TTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             -HcCCcHHHHHHHHCCC-CHHHHHHHHHHHHHHhccCCHHHHHHHHH-CCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence             1457799999999999 999999999999999985  568899987 89999999986 454 8899999999999999


Q ss_pred             c-CcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCC--CcchHHHHHHHHHHHhC----CHHHHHHHH
Q 036338          263 S-SKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNG--TVLITEKALRLVEILST----TKQGRMEIC  334 (408)
Q Consensus       263 ~-~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~L~~L~~----~~~~~~~~~  334 (408)
                      . .++|+..++ ..|+||+|+.+|.++                   +.  ...+++.|+++|.||+.    +++++..+.
T Consensus       200 ~~~~~nk~~i~~~~Gai~~Lv~lL~~~-------------------~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~  260 (354)
T 3nmw_A          200 AHCTENKADICAVDGALAFLVGTLTYR-------------------SQTNTLAIIESGGGILRNVSSLIATNEDHRQILR  260 (354)
T ss_dssp             TTCHHHHHHHHHSTTHHHHHHHHTTCC-------------------CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccChhhhHHHHHhcCcHHHHHHHhccC-------------------CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence            9 668999998 799999999999863                   11  12589999999999994    899998887


Q ss_pred             hhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          335 QDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       335 ~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      +. |++|.|+++|..                     +.++.+++.|+++.|+.+|++. ++.+|+.|..+|+.|..
T Consensus       261 ~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~  334 (354)
T 3nmw_A          261 EN-NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMA  334 (354)
T ss_dssp             TT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHT
T ss_pred             Hc-CCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHc
Confidence            74 999999996543                     5677889999999999998765 67789999999999887

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.95  E-value=3.1e-27  Score=237.34  Aligned_cols=244  Identities=16%  Similarity=0.184  Sum_probs=204.6

Q ss_pred             HHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcC----------cchhhHHHHHHHHHHhcccccchHHHHHHHhc
Q 036338          117 SENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNV----------NDVNMLKQVIRVLDLILNKIEDQQHLMNLILK  186 (408)
Q Consensus       117 ~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~----------~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~  186 (408)
                      .+|++.|.+++.+ +++|..|.+. |++++|+.+|...          ....++++|+++|.||+.  ++++. +..+. 
T Consensus       166 ~qAv~aL~nls~~-~e~R~~i~~~-G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~--~~~~~-k~~i~-  239 (458)
T 3nmz_A          166 CPAVCVLMKLSFD-EEHRHAMNEL-GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF--GDVAN-KATLC-  239 (458)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHHHT-THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT--TCHHH-HHHHH-
T ss_pred             HHHHHHHHHhcCC-HHHHHHHHHC-CCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC--CCccc-HHHHH-
Confidence            4899999999764 9999999999 9999999999631          124466999999999997  55543 55553 


Q ss_pred             cCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC--cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc-
Q 036338          187 RDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD--ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS-  263 (408)
Q Consensus       187 ~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~-  263 (408)
                      ...|+||+|+++|+++ +.++++.|+++|.+|+..  +++|..|.+ .|+|++||++|....+..+++.|+++|+||+. 
T Consensus       240 ~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~-~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~  317 (458)
T 3nmz_A          240 SMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAH  317 (458)
T ss_dssp             HCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHH-TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             HcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccC
Confidence            1457799999999999 999999999999999984  468899987 89999999975443388999999999999999 


Q ss_pred             CcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCC--CcchHHHHHHHHHHHh----CCHHHHHHHHhh
Q 036338          264 SKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNG--TVLITEKALRLVEILS----TTKQGRMEICQD  336 (408)
Q Consensus       264 ~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~L~~L~----~~~~~~~~~~~~  336 (408)
                      .++|+..++ .+|+||+|+.+|.++                   +.  ...+++.|+++|.||+    .+++++..+.+.
T Consensus       318 ~~~nk~~I~~~~Gal~~Lv~LL~~~-------------------~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~  378 (458)
T 3nmz_A          318 CTENKADICAVDGALAFLVGTLTYR-------------------SQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN  378 (458)
T ss_dssp             CHHHHHHHHHSTTHHHHHHHHTTCC-------------------CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHhcCcHHHHHHHhcCC-------------------CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc
Confidence            778999998 799999999999863                   11  1258999999999999    489999888874


Q ss_pred             cCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          337 AALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       337 ~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                       |++|.|+++|..                     +.++.+++.|+++.|+.+|++. ++.+|+.|..+|+.|..
T Consensus       379 -G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~  450 (458)
T 3nmz_A          379 -NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMA  450 (458)
T ss_dssp             -THHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHT
T ss_pred             -ccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHc
Confidence             899999996533                     5677788999999999998765 67789999999998887

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.95  E-value=5.5e-26  Score=229.69  Aligned_cols=264  Identities=15%  Similarity=0.148  Sum_probs=210.0

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH  179 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~  179 (408)
                      .++.+|+.|++++.+ |..|++.|++++..++.++..+++. |+||.|+.+|++++ ..+++.|+++|.||+.  ++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~--~~~~~   78 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPN-QNVQQAAAGALRNLVF--RSTTN   78 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHT-THHHHHHHHTTSSC-HHHHHHHHHHHHHHHS--SCHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHc-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhc--CCHHH
Confidence            378899999999888 9999999999998888889899999 99999999999876 3455999999999997  43343


Q ss_pred             HHHHHhccCcccHHHHHHHHh-cCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc--------cC-----
Q 036338          180 LMNLILKRDQDCLNSLLLVLK-QQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS--------LD-----  245 (408)
Q Consensus       180 ~~~~i~~~~~g~i~~Lv~lL~-~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~--------~~-----  245 (408)
                       +..|.  +.|+||+|+++|+ ++ +.++++.|+++|.+|+.++++|..+..  |++|+|+++|.        ++     
T Consensus        79 -k~~i~--~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~  152 (457)
T 1xm9_A           79 -KLETR--RQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSR  152 (457)
T ss_dssp             -HHHHH--HTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC--------
T ss_pred             -HHHHH--HcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhc
Confidence             77777  8999999999999 77 999999999999999999889998875  99999999993        22     


Q ss_pred             --CCHHHHHHHHHHHHHhccCcchHHHHHhc-CcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHH
Q 036338          246 --SDRRLIEASLSCLITISSSKRAKTKLINH-KLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEI  322 (408)
Q Consensus       246 --~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~-G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~  322 (408)
                        .++.+.+.|+++|+|||.+++++..+++. |+|++|+.+|++..               .....+..+++.|+++|.+
T Consensus       153 e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~---------------~~~~~~~~~~e~a~~~L~n  217 (457)
T 1xm9_A          153 EVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCV---------------AASRCDDKSVENCMCVLHN  217 (457)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHH---------------HHTCTTCTTHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhc---------------cccCCchHHHHHHHHHHHh
Confidence              24567779999999999998899999997 99999999998510               0001356789999999999


Q ss_pred             HhCCHHHH--------------------------------------------------HHHHhhcCchHHHHHHHHH---
Q 036338          323 LSTTKQGR--------------------------------------------------MEICQDAALLNGVVQKMLK---  349 (408)
Q Consensus       323 L~~~~~~~--------------------------------------------------~~~~~~~g~i~~lv~~l~~---  349 (408)
                      |+...+..                                                  .+.+-+.++++.|+.+|..   
T Consensus       218 Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~  297 (457)
T 1xm9_A          218 LSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK  297 (457)
T ss_dssp             HTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC
T ss_pred             cccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCC
Confidence            97422100                                                  0111224667778876543   


Q ss_pred             -----------------------HHHHHHH-hcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhhc
Q 036338          350 -----------------------TAQEAVS-SSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVN  390 (408)
Q Consensus       350 -----------------------~~~~~~~-~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~  390 (408)
                                             ...+.++ +.|+++.|+.+|+++ ++.+|+.|..+|+.++.+
T Consensus       298 ~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~  361 (457)
T 1xm9_A          298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH  361 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC
Confidence                                   0112333 689999999999776 577888898999988773

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.94  E-value=5.2e-26  Score=229.90  Aligned_cols=259  Identities=15%  Similarity=0.146  Sum_probs=209.4

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhh-cCcchhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILS-NVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~-s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      .+.|+.|++.|++++++ +..|+++|++++.+++++|..|++. |+||.|+.+|. +++ .++++.|+++|.||+.  ++
T Consensus        43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~-G~i~~Lv~lL~~~~~-~~~~~~a~~aL~nLa~--~~  118 (457)
T 1xm9_A           43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ-NGIREAVSLLRRTGN-AEIQKQLTGLLWNLSS--TD  118 (457)
T ss_dssp             TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT-TCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHT--SS
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHhhCCC-HHHHHHHHHHHHHHhc--CH
Confidence            46789999999998888 9999999999999889999999999 99999999998 544 4456999999999997  54


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHh--------cC-------CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHh
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLK--------QQ-------ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKS  241 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~--------~~-------~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~l  241 (408)
                      +.  +..|.  + |++++|+++|.        ++       .+.+++.+|+++|.||+.+++++..+.+..|++++|+.+
T Consensus       119 ~~--~~~i~--~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~l  193 (457)
T 1xm9_A          119 EL--KEELI--A-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAY  193 (457)
T ss_dssp             ST--HHHHH--H-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHH
T ss_pred             Hh--HHHHH--h-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHH
Confidence            44  67776  7 99999999993        22       134455599999999999988888888723999999988


Q ss_pred             cccC----------------------------------------------------------------------------
Q 036338          242 LSLD----------------------------------------------------------------------------  245 (408)
Q Consensus       242 L~~~----------------------------------------------------------------------------  245 (408)
                      |+++                                                                            
T Consensus       194 L~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (457)
T 1xm9_A          194 VQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNP  273 (457)
T ss_dssp             HHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSC
T ss_pred             HHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCc
Confidence            8630                                                                            


Q ss_pred             ----------------------CCHHHHHHHHHHHHHhccCcch-----HHHHH-hcCcHHHHHHHhccCCCCCCCCCCC
Q 036338          246 ----------------------SDRRLIEASLSCLITISSSKRA-----KTKLI-NHKLITELGKLITDGHNGNGSGNGN  297 (408)
Q Consensus       246 ----------------------~~~~~~~~A~~aL~~Ls~~~~n-----~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~  297 (408)
                                            .++..+++|++||+||+.+...     .+.++ ++|++|.|+++|.++          
T Consensus       274 ~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~----------  343 (457)
T 1xm9_A          274 KGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG----------  343 (457)
T ss_dssp             CGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS----------
T ss_pred             hHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC----------
Confidence                                  1356777889999999975432     12344 699999999999864          


Q ss_pred             CCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH---------------------------H
Q 036338          298 GNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK---------------------------T  350 (408)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~---------------------------~  350 (408)
                                 +..++..|+++|.||+.+++++..+..  |++|.|+++|..                           +
T Consensus       344 -----------~~~v~~~A~~aL~nls~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~  410 (457)
T 1xm9_A          344 -----------NSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ  410 (457)
T ss_dssp             -----------CHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH
T ss_pred             -----------CHhHHHHHHHHHHHHhcCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH
Confidence                       789999999999999999888877754  689999986543                           3


Q ss_pred             HHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          351 AQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       351 ~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      ..+.+.+.|++++|..++.++.++.++++|..+|..+-.
T Consensus       411 ~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~  449 (457)
T 1xm9_A          411 LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence            345566789999999988776578899999888875544

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.94  E-value=2e-25  Score=229.39  Aligned_cols=268  Identities=17%  Similarity=0.173  Sum_probs=210.2

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc-
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED-  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~-  176 (408)
                      ...|+.||+.|.+++.+ |..|++.|.+++..++.+|..|++. |+||.||.+|++++ ..+++.|+++|.||+.  ++ 
T Consensus        47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~-G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~--~~~  122 (584)
T 3l6x_A           47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKL-KGIPVLVGLLDHPK-KEVHLGACGALKNISF--GRD  122 (584)
T ss_dssp             CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHGGGCSS-HHHHHHHHHHHHHHTS--SSC
T ss_pred             cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHc-CCcHHHHHHHCCCC-HHHHHHHHHHHHHHHc--cCC
Confidence            45689999999999888 9999999999999899999999999 99999999999887 3445999999999996  42 


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc-------------
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS-------------  243 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~-------------  243 (408)
                      ++. +..|.  +.|+|++|+++|+++.+.+++++|+.+|++|+.++++|..|+.  +++++|+++|.             
T Consensus       123 ~~n-k~~I~--~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~  197 (584)
T 3l6x_A          123 QDN-KIAIK--NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNED  197 (584)
T ss_dssp             HHH-HHHHH--HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC------
T ss_pred             HHH-HHHHH--HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhccccccccccccc
Confidence            333 77787  8999999999999842788999999999999999999999985  46999999872             


Q ss_pred             ----cCCCHHHHHHHHHHHHHhccCcc-hHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Q 036338          244 ----LDSDRRLIEASLSCLITISSSKR-AKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKAL  317 (408)
Q Consensus       244 ----~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  317 (408)
                          +..+..+++.|+++|+||+...+ +|..|++ .|+|++||.+|++..               .....+...++.|+
T Consensus       198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~---------------~~~~~~~~~~enav  262 (584)
T 3l6x_A          198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEI---------------GQKDSDSKLVENCV  262 (584)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHH---------------HTTCCSCHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhh---------------cccCccHHHHHHHH
Confidence                11257999999999999999875 5899987 577789999997510               00023678999999


Q ss_pred             HHHHHHhCCHHHHH-------H---------HHhhc---------CchHHHHHHHHH-----------------------
Q 036338          318 RLVEILSTTKQGRM-------E---------ICQDA---------ALLNGVVQKMLK-----------------------  349 (408)
Q Consensus       318 ~~L~~L~~~~~~~~-------~---------~~~~~---------g~i~~lv~~l~~-----------------------  349 (408)
                      ++|.||+..-+...       .         .....         ++++.|+.+|..                       
T Consensus       263 ~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~  342 (584)
T 3l6x_A          263 CLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT  342 (584)
T ss_dssp             HHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH
T ss_pred             HHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc
Confidence            99999997632111       0         01112         334556765532                       


Q ss_pred             ---HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhhcC
Q 036338          350 ---TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNY  391 (408)
Q Consensus       350 ---~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~  391 (408)
                         ..+..+.+.|+++.|+.+|.+. ++.+++.|..+|+.|+.+.
T Consensus       343 ~~~~~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~  386 (584)
T 3l6x_A          343 YGRYIRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDA  386 (584)
T ss_dssp             HHHHHHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCh
Confidence               1122334579999999999766 5678999999999998743

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.94  E-value=2e-25  Score=224.26  Aligned_cols=261  Identities=14%  Similarity=0.118  Sum_probs=213.3

Q ss_pred             HHHHHHHHHHHhcCC------------hh-HHHHHHHHHHHhhhChhhhhhhhhcCChH----------HHHHHHhhcCc
Q 036338           99 QDEVKDIIRVAISKN------------ED-FSENLTKIVAFAKESDENKTFLAKFDGLV----------VMLVEILSNVN  155 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~------------~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i----------~~Lv~lL~s~~  155 (408)
                      .+.++.||+.|+..+            ++ +.+|+++|.+++.+.++.....++. |++          +.+++++.+..
T Consensus        69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~  147 (458)
T 3nmz_A           69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREI-RVLHLLEQIRAYCETCWEWQEAHE  147 (458)
T ss_dssp             HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHH-HHHHHHHHhhhhhHHHHHHHHhhc
Confidence            456889999999743            46 9999999999999988888888888 888          77778887652


Q ss_pred             ---c-----hh-----hHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhc-----------CCChHHHHHH
Q 036338          156 ---D-----VN-----MLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQ-----------QESVDSRIES  211 (408)
Q Consensus       156 ---~-----~~-----~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~-----------~~~~~~~~~A  211 (408)
                         +     .+     .+..|+++|.|++.   +++. |..|.  +.|++++|+.+|..           . +.+.+.+|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~---~~e~-R~~i~--~~G~l~~Lv~LL~~~~~~~~~~~~~~-~~~l~~~A  220 (458)
T 3nmz_A          148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSF---DEEH-RHAMN--ELGGLQAIAELLQVDCEMYGLTNDHY-SITLRRYA  220 (458)
T ss_dssp             SSSCCCSCC--CCCTTTTHHHHHHHHHHTT---SHHH-HHHHH--HTTHHHHHHHHHHHHHHHSTTCCCHH-HHHHHHHH
T ss_pred             cccccccCCccchhhHHHHHHHHHHHHhcC---CHHH-HHHHH--HCCCHHHHHHHHhhhhcccccccCCC-CHHHHHHH
Confidence               2     11     12389999999985   4333 88887  89999999999952           2 46789999


Q ss_pred             HHHHHHhhcCcc-hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccC--cchHHHHHhcCcHHHHHHHhccCC
Q 036338          212 LRLLEFIAGDAD-SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSS--KRAKTKLINHKLITELGKLITDGH  288 (408)
Q Consensus       212 a~~L~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~--~~n~~~~~~~G~i~~Lv~lL~~~~  288 (408)
                      +++|.+|+.+++ ++..+....|+||+||++|+++ ++++++.|++||+||+..  ++||..++++|+||+|+++|.+  
T Consensus       221 a~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~--  297 (458)
T 3nmz_A          221 GMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE--  297 (458)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT--
T ss_pred             HHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc--
Confidence            999999998775 6777754367799999999987 899999999999999985  4689999999999999998643  


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhhcCchHHHHHHHHH------------------
Q 036338          289 NGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQDAALLNGVVQKMLK------------------  349 (408)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g~i~~lv~~l~~------------------  349 (408)
                                        +.+..+++.|+.+|.||+. +++++.+++...|++|.|+++|..                  
T Consensus       298 ------------------s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~  359 (458)
T 3nmz_A          298 ------------------VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR  359 (458)
T ss_dssp             ------------------CCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHH
T ss_pred             ------------------CCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence                              2377899999999999998 889999998667999999986531                  


Q ss_pred             ----------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          350 ----------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       350 ----------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                                +.++.+++.|+++.|+.+|+++ +..+++.|..+|..|..
T Consensus       360 nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~  408 (458)
T 3nmz_A          360 NVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSA  408 (458)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHS
T ss_pred             HHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHc
Confidence                      2455678899999999999865 56688888888888874

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.93  E-value=4.2e-25  Score=226.93  Aligned_cols=260  Identities=14%  Similarity=0.182  Sum_probs=209.0

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhh-ChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKE-SDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~-~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      .+.|+.||++|++++.+ |..|+++|++++.. ++++|..|++. |+||.|+.+|++..+..+++.|+.+|++|+.  .+
T Consensus        89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~-GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~--~~  165 (584)
T 3l6x_A           89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC-DGVPALVRLLRKARDMDLTEVITGTLWNLSS--HD  165 (584)
T ss_dssp             TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHT-THHHHHHHHHHHCCSHHHHHHHHHHHHHHTT--SG
T ss_pred             cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC--Cc
Confidence            46789999999999988 99999999999985 78999999999 9999999999985434456999999999997  56


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHh-----------------cCCChHHHHHHHHHHHHhhcCcc-hhhHHhhhcChHHHH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLK-----------------QQESVDSRIESLRLLEFIAGDAD-SKVKIAERDGLLAET  238 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~-----------------~~~~~~~~~~Aa~~L~~La~~~~-~~~~i~~~~g~i~~L  238 (408)
                      ++  +..|.  + ++|++|+++|.                 +..+.+++++|+++|.||+.+.+ +|..|.+..|++++|
T Consensus       166 ~~--k~~I~--~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~L  240 (584)
T 3l6x_A          166 SI--KMEIV--D-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDAL  240 (584)
T ss_dssp             GG--HHHHH--H-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHH
T ss_pred             hh--hHHHH--h-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHH
Confidence            55  66675  4 57999999872                 11146899999999999998764 588887656777777


Q ss_pred             HHhccc-------------------------------------------------------------------------C
Q 036338          239 VKSLSL-------------------------------------------------------------------------D  245 (408)
Q Consensus       239 v~lL~~-------------------------------------------------------------------------~  245 (408)
                      |.+|++                                                                         .
T Consensus       241 V~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s  320 (584)
T 3l6x_A          241 IFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES  320 (584)
T ss_dssp             HHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccC
Confidence            776642                                                                         1


Q ss_pred             CCHHHHHHHHHHHHHhccCc-----chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 036338          246 SDRRLIEASLSCLITISSSK-----RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLV  320 (408)
Q Consensus       246 ~~~~~~~~A~~aL~~Ls~~~-----~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L  320 (408)
                      .++.++++|++||+|||.+.     .++..+.+.|++|.|+.||.++                     +..+++.|+++|
T Consensus       321 ~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~---------------------~~~v~~~A~~aL  379 (584)
T 3l6x_A          321 KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE---------------------HERVVKAASGAL  379 (584)
T ss_dssp             CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS---------------------CHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC---------------------CHHHHHHHHHHH
Confidence            23566778888888887653     2344445689999999999864                     789999999999


Q ss_pred             HHHhCCHHHHHHHHhhcCchHHHHHHHHH-----------------------------HHHHHHHhcCcHHHHHHHHhhc
Q 036338          321 EILSTTKQGRMEICQDAALLNGVVQKMLK-----------------------------TAQEAVSSSNVLTKILLLMQSN  371 (408)
Q Consensus       321 ~~L~~~~~~~~~~~~~~g~i~~lv~~l~~-----------------------------~~~~~~~~~g~~~~Ll~ll~~~  371 (408)
                      .||+.++.++..| . .|++|.||++|..                             +.++.++++|++++|+.++++.
T Consensus       380 ~nLs~~~~~~~~I-~-~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~  457 (584)
T 3l6x_A          380 RNLAVDARNKELI-G-KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSG  457 (584)
T ss_dssp             HHHHTTCSCHHHH-H-HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCS
T ss_pred             HHHhCChhHHHHH-H-hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC
Confidence            9999998899877 4 3889999975431                             5667788999999999999875


Q ss_pred             -CCHHHHHHHHHHHHHHhh
Q 036338          372 -CTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       372 -~~~~~k~~A~~lL~~l~~  389 (408)
                       ..+..++.|..+|..+..
T Consensus       458 ~~~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          458 NRSEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             SSCHHHHHHHHHHHHHHHT
T ss_pred             CCChHHHHHHHHHHHHHHc
Confidence             478889999999998765

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.93  E-value=2.1e-25  Score=217.53  Aligned_cols=221  Identities=15%  Similarity=0.130  Sum_probs=185.1

Q ss_pred             HHHHHHHHHHHhcC-----------Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHH
Q 036338           99 QDEVKDIIRVAISK-----------NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRV  166 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~-----------~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~  166 (408)
                      .+.++.|+..|.+.           +.+ |..|++.|.+++.+++.+|..|....|+||.|+.+|++++ ..+++.|+++
T Consensus        72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~-~~v~~~A~~a  150 (354)
T 3nmw_A           72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES-EDLQQVIASV  150 (354)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSC-HHHHHHHHHH
T ss_pred             cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCC-HHHHHHHHHH
Confidence            45678888888531           234 8899999999999888899988655266999999999876 3345999999


Q ss_pred             HHHhcccccchHHHHHHHhccCcccHHHHHHHH-hcCCChHHHHHHHHHHHHhhc-CcchhhHHhhhcChHHHHHHhccc
Q 036338          167 LDLILNKIEDQQHLMNLILKRDQDCLNSLLLVL-KQQESVDSRIESLRLLEFIAG-DADSKVKIAERDGLLAETVKSLSL  244 (408)
Q Consensus       167 L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL-~~~~~~~~~~~Aa~~L~~La~-~~~~~~~i~~~~g~i~~Lv~lL~~  244 (408)
                      |.||+.  .+++..|..|.  +.|+|++|+++| +++ +.++++.|+.+|++|+. .+++|..|+...|++++|+++|++
T Consensus       151 L~nLs~--~~~~~~k~~i~--~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~  225 (354)
T 3nmw_A          151 LRNLSW--RADVNSKKTLR--EVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY  225 (354)
T ss_dssp             HHHHHT--TCCHHHHHHHH--HTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred             HHHHhc--cCCHHHHHHHH--HCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhcc
Confidence            999986  42222277777  899999999975 556 89999999999999998 668899998448999999999987


Q ss_pred             CCCH---HHHHHHHHHHHHhcc----CcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Q 036338          245 DSDR---RLIEASLSCLITISS----SKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKAL  317 (408)
Q Consensus       245 ~~~~---~~~~~A~~aL~~Ls~----~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  317 (408)
                      +.+.   ++++.|+++|+||+.    +++++..++++|+||+|+++|.++                     +..+++.|+
T Consensus       226 ~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~---------------------~~~v~~~A~  284 (354)
T 3nmw_A          226 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH---------------------SLTIVSNAC  284 (354)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS---------------------CHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC---------------------ChHHHHHHH
Confidence            6332   589999999999996    778999999999999999999864                     778999999


Q ss_pred             HHHHHHh-CCHHHHHHHHhhcCchHHHHHHH
Q 036338          318 RLVEILS-TTKQGRMEICQDAALLNGVVQKM  347 (408)
Q Consensus       318 ~~L~~L~-~~~~~~~~~~~~~g~i~~lv~~l  347 (408)
                      ++|.||+ .+++++..+++. |+||.|+++|
T Consensus       285 ~aL~nLa~~~~~~~~~i~~~-G~i~~Lv~LL  314 (354)
T 3nmw_A          285 GTLWNLSARNPKDQEALWDM-GAVSMLKNLI  314 (354)
T ss_dssp             HHHHHHTSSCHHHHHHHHHT-THHHHHHTTT
T ss_pred             HHHHHHhCCCHHHHHHHHHC-CCHHHHHHHH
Confidence            9999999 579999988875 9999999954

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.93  E-value=3.8e-24  Score=226.76  Aligned_cols=260  Identities=13%  Similarity=0.150  Sum_probs=214.0

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhCh-----------------------------hhh---hhhhhcCChHH
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESD-----------------------------ENK---TFLAKFDGLVV  145 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~-----------------------------~~r---~~i~~~~G~i~  145 (408)
                      .+.++.||+.|++.+.. +..|++.|.+++.+.+                             .++   +.+++. |+||
T Consensus       420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea-GaVp  498 (810)
T 3now_A          420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE-GITT  498 (810)
T ss_dssp             HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT-THHH
T ss_pred             cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC-cCHH
Confidence            67899999999998877 9999999999997542                             233   678899 9999


Q ss_pred             HHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh
Q 036338          146 MLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK  225 (408)
Q Consensus       146 ~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~  225 (408)
                      .|+.+|++++ ..+++.|+++|.||+.   +.+. +..+.  ++|++++|+.+|+++ +...|+.|+++|.+|+.+.+..
T Consensus       499 ~LV~LL~s~s-~~vqe~Aa~aL~NLA~---d~~~-r~~Vv--~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~  570 (810)
T 3now_A          499 ALCALAKTES-HNSQELIARVLNAVCG---LKEL-RGKVV--QEGGVKALLRMALEG-TEKGKRHATQALARIGITINPE  570 (810)
T ss_dssp             HHHHHHTCCC-HHHHHHHHHHHHHHHT---SHHH-HHHHH--HTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHcCCC-HHHHHHHHHHHHHHcC---CHHH-HHHHH--HCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChh
Confidence            9999999877 3445999999999996   3333 77777  899999999999999 9999999999999999765544


Q ss_pred             hHHh--hhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCC
Q 036338          226 VKIA--ERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNG  302 (408)
Q Consensus       226 ~~i~--~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~  302 (408)
                      ..+.  ...|++|+|+.+|.++.+...+..|++||.||+..+ +++..++++|++|.|+.+|.++               
T Consensus       571 ~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~---------------  635 (810)
T 3now_A          571 VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED---------------  635 (810)
T ss_dssp             HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC---------------
T ss_pred             hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC---------------
Confidence            3332  124689999999986535455678999999999974 6899999999999999999864               


Q ss_pred             CCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH---------------------HHHHHHHh-cCc
Q 036338          303 NGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK---------------------TAQEAVSS-SNV  360 (408)
Q Consensus       303 ~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~---------------------~~~~~~~~-~g~  360 (408)
                            +..+++.|+++|.||+.+++.+.+++...|+++.|+.++..                     ...+.+++ .|+
T Consensus       636 ------~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~  709 (810)
T 3now_A          636 ------HLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW  709 (810)
T ss_dssp             ------CTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTH
T ss_pred             ------CHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence                  78899999999999999999999998545899999985432                     34566777 899


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          361 LTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       361 ~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      ++.|+.+|+++ +..+|+.|.++|..+..
T Consensus       710 I~~Lv~LL~s~-d~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          710 LDILHTLIANP-SPAVQHRGIVIILNMIN  737 (810)
T ss_dssp             HHHHHHHHTCS-SHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCC-CHHHHHHHHHHHHHHHh
Confidence            99999999865 56678777777776654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.93  E-value=1.4e-24  Score=229.99  Aligned_cols=260  Identities=15%  Similarity=0.086  Sum_probs=220.1

Q ss_pred             HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338          100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ  178 (408)
Q Consensus       100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~  178 (408)
                      +.++.|++.+++++++ |.+|++.|.+++. ++++|..+++. |++|+|+.+|.+++ ...++.|+++|.+|+.  +.++
T Consensus       495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~-Gaip~Lv~LL~s~~-~~~k~~Aa~AL~nL~~--~~~p  569 (810)
T 3now_A          495 GITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQE-GGVKALLRMALEGT-EKGKRHATQALARIGI--TINP  569 (810)
T ss_dssp             THHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHT-THHHHHHHHHHSSC-HHHHHHHHHHHHHHHH--HSCH
T ss_pred             cCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHC-CCHHHHHHHHccCC-HHHHHHHHHHHHHHhc--CCCh
Confidence            5688999999999888 9999999999996 57899999999 99999999999877 3345999999999986  3333


Q ss_pred             HHHHHHhc-cCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          179 HLMNLILK-RDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       179 ~~~~~i~~-~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                        ...+.. ...|++++|+.+|.++.+...+..|+++|.||+..+ +++..|.+ .|+++.|+.+|.++ ++.++++|++
T Consensus       570 --~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~LL~s~-~~~Vq~~A~~  645 (810)
T 3now_A          570 --EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLMED-HLYLTRAAAQ  645 (810)
T ss_dssp             --HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSC-CTTHHHHHHH
T ss_pred             --hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHcCC-CHHHHHHHHH
Confidence              222210 024799999999986524455678999999999875 67888887 89999999999987 8899999999


Q ss_pred             HHHHhccCcchHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHH
Q 036338          257 CLITISSSKRAKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEIC  334 (408)
Q Consensus       257 aL~~Ls~~~~n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~  334 (408)
                      +|.||+.+++.+..+++ .|+++.|+.+++++                     +..+++.|+++|.+|+. +++..+.++
T Consensus       646 ~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~---------------------d~~vq~~Aa~ALanLt~~s~~~~~~ii  704 (810)
T 3now_A          646 CLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE---------------------DEETATACAGALAIITSVSVKCCEKIL  704 (810)
T ss_dssp             HHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS---------------------SHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHhCChHHHHHHHhccCcHHHHHHHhcCC---------------------CHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            99999999999999995 89999999999864                     78999999999999998 788888888


Q ss_pred             hhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhc--CCHHHHHHHHHHHHHHhh
Q 036338          335 QDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSN--CTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       335 ~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~--~~~~~k~~A~~lL~~l~~  389 (408)
                      ...|++|.|+++|..                     +..+.++++|++++|..+++..  ....+.++|.++|+.+-+
T Consensus       705 ~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~  782 (810)
T 3now_A          705 AIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER  782 (810)
T ss_dssp             TSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence            756999999996533                     5677889999999999998654  468899999999998876

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.92  E-value=2.2e-24  Score=197.38  Aligned_cols=200  Identities=17%  Similarity=0.172  Sum_probs=170.3

Q ss_pred             HHHHHHHHHhcCCh--h-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338          101 EVKDIIRVAISKNE--D-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~--~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      .++.+|+.|++++.  + +..|++.|.+++.+++.+|..|++. |+||+||.+|++++ ..+++.|+++|.||+.  .++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~-G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~--~~~   84 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQL-RGILKLLQLLKVQN-EDVQRAVCGALRNLVF--EDN   84 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT-THHHHHHHGGGCCC-HHHHHHHHHHHHHHHT--TCH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHHh--CCH
Confidence            47889999999987  6 7889999999999999999999999 99999999999876 3345999999999996  434


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhc-CCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc---cC--------
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQ-QESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS---LD--------  245 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~-~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~---~~--------  245 (408)
                      +. +..|.  ++|+||+|+++|++ + +.+++++|+.+|++|+..+++|..|..  +++++|+.++.   .+        
T Consensus        85 ~n-k~~I~--~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~  158 (233)
T 3tt9_A           85 DN-KLEVA--ELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPK  158 (233)
T ss_dssp             HH-HHHHH--HTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCC
T ss_pred             HH-HHHHH--HcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCccccccc
Confidence            43 77787  89999999999984 6 899999999999999999999999986  46999999773   11        


Q ss_pred             ----CCHHHHHHHHHHHHHhccCc-chHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 036338          246 ----SDRRLIEASLSCLITISSSK-RAKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRL  319 (408)
Q Consensus       246 ----~~~~~~~~A~~aL~~Ls~~~-~n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  319 (408)
                          .++++++.|+++|+||+..+ ++|+.|.+ .|+|+.|+.++++...               ....+...+|.|+.+
T Consensus       159 ~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~---------------~~~~~~k~~En~v~~  223 (233)
T 3tt9_A          159 ANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIA---------------DYQPDDKATENCVCI  223 (233)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHH---------------TTCTTCHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhh---------------cccchhHHHHHHHHH
Confidence                26699999999999999854 89999997 5789999999986200               013467899999999


Q ss_pred             HHHHhC
Q 036338          320 VEILST  325 (408)
Q Consensus       320 L~~L~~  325 (408)
                      |.||+.
T Consensus       224 L~nLs~  229 (233)
T 3tt9_A          224 LHNLSY  229 (233)
T ss_dssp             HHHHCC
T ss_pred             HHHHHh
Confidence            999985

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.92  E-value=2.6e-24  Score=220.41  Aligned_cols=259  Identities=13%  Similarity=0.165  Sum_probs=212.3

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhh-hChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAK-ESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ  178 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~-~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~  178 (408)
                      .++.+|+.+.+++.+ |..|+..++.+.+ +...-.+.|++. |+||.||.+|++.+...++.+|+++|.||+.  ++++
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~-G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias--~~~e  134 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRA-GLIPKFVSFLGKTDCSPIQFESAWALTNIAS--GTSE  134 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHT-THHHHHHHHTTCTTCHHHHHHHHHHHHHHHT--SCHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC-CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhc--CCHH
Confidence            488999999999998 9999999998754 333346788899 9999999999876644556999999999987  5665


Q ss_pred             HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCC----CHHHHHH
Q 036338          179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDS----DRRLIEA  253 (408)
Q Consensus       179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~----~~~~~~~  253 (408)
                      . ++.|+  +.|+||.|+.+|+++ +.++|+.|+++|.+|+.+. +.+..+.. .|++++|+.+|....    ....++.
T Consensus       135 ~-~~~vv--~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~~~~~~~~~~~  209 (510)
T 3ul1_B          135 Q-TKAVV--DGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRN  209 (510)
T ss_dssp             H-HHHHH--HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHHHHHH
T ss_pred             H-HHHHH--HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHHHHhccchhhhHHHHHH
Confidence            5 56666  899999999999999 9999999999999999875 56667766 899999999998641    2457889


Q ss_pred             HHHHHHHhccCcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHH
Q 036338          254 SLSCLITISSSKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRME  332 (408)
Q Consensus       254 A~~aL~~Ls~~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~  332 (408)
                      ++++|.+++.+..+...+. ..|++|.|+.+|.++                     +..++..|+++|.+|+..+.++..
T Consensus       210 a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---------------------~~~v~~~A~~aL~~L~~~~~~~~~  268 (510)
T 3ul1_B          210 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---------------------DPEVLADSCWAISYLTDGPNERIE  268 (510)
T ss_dssp             HHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             HHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC---------------------CHHHHHHHHHHHHHHhhchhhhHH
Confidence            9999999999876555544 578999999999864                     789999999999999987666666


Q ss_pred             HHhhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          333 ICQDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       333 ~~~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      ++...|+++.|+++|..                     ...+.+++.|+++.|+.+|.+. .+.+|+.|..+|..|..
T Consensus       269 ~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a  345 (510)
T 3ul1_B          269 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITA  345 (510)
T ss_dssp             HHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTT
T ss_pred             HHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHc
Confidence            66567999999996533                     3556678899999999888754 56788888888888776

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.92  E-value=8e-24  Score=216.75  Aligned_cols=259  Identities=12%  Similarity=0.182  Sum_probs=213.2

Q ss_pred             HHHHHHHHHHHhcCC-hh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIRVAISKN-ED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~-~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      .+.|+.||+.|+..+ ++ |.+|+++|.+++.++++++..+++. |+||.|+.+|++++ ..+++.|+++|.||+.  +.
T Consensus        99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~-GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~--d~  174 (510)
T 3ul1_B           99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG-GAIPAFISLLASPH-AHISEQAVWALGNIAG--DG  174 (510)
T ss_dssp             TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHHT--TC
T ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHHh--CC
Confidence            467899999998654 56 9999999999999999999999999 99999999999887 3345999999999996  33


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCC-----hHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQES-----VDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLI  251 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~-----~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  251 (408)
                      ++ .+..+.  +.|++++|+.+|.+. +     ...+..++++|.+++.+......+....|++|.|+++|+++ +.+++
T Consensus       175 ~~-~r~~v~--~~G~i~~Ll~lL~~~-~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~  249 (510)
T 3ul1_B          175 SA-FRDLVI--KHGAIDPLLALLAVP-DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVL  249 (510)
T ss_dssp             HH-HHHHHH--HTTCHHHHHHHTCSS-CGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-CHHHH
T ss_pred             HH-HHHHHH--HcCChHHHHHHHHhc-cchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-CHHHH
Confidence            34 377777  899999999999865 4     34678899999999998766555554478999999999997 89999


Q ss_pred             HHHHHHHHHhccCcchHHHH-HhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHH
Q 036338          252 EASLSCLITISSSKRAKTKL-INHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQG  329 (408)
Q Consensus       252 ~~A~~aL~~Ls~~~~n~~~~-~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~  329 (408)
                      ..|+++|++|+.+..++..+ ++.|+++.|+.+|.++                     +..++..|+.+|.+|+. +++.
T Consensus       250 ~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~---------------------~~~v~~~al~aL~nl~~~~~~~  308 (510)
T 3ul1_B          250 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT---------------------ELPIVTPALRAIGNIVTGTDEQ  308 (510)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS---------------------CHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC---------------------ChhhhhHHHHHHHHhhcCCHHH
Confidence            99999999999987766554 5899999999999864                     78999999999999986 4566


Q ss_pred             HHHHHhhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036338          330 RMEICQDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFR  388 (408)
Q Consensus       330 ~~~~~~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~  388 (408)
                      +..+.. .|+++.|+.+|..                     +.++.+++.|+++.|+.+|++. +..+|+.|..+|..+.
T Consensus       309 ~~~i~~-~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~  386 (510)
T 3ul1_B          309 TQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYT  386 (510)
T ss_dssp             HHHHHH-TTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHhh-ccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence            666665 5899988875432                     4566778899999999999866 4667777777777665


Q ss_pred             h
Q 036338          389 V  389 (408)
Q Consensus       389 ~  389 (408)
                      .
T Consensus       387 ~  387 (510)
T 3ul1_B          387 S  387 (510)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.92  E-value=3e-23  Score=213.36  Aligned_cols=259  Identities=12%  Similarity=0.175  Sum_probs=213.6

Q ss_pred             HHHHHHHHHHHhcCC-hh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIRVAISKN-ED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~-~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      .+.|+.||+.|+.++ ++ +..|++.|.+++..++.++..+++. |+||.|+.+|.+++ ..+++.|+++|+||+.  ++
T Consensus       118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~-Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~--~~  193 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG-GAIPAFISLLASPH-AHISEQAVWALGNIAG--AG  193 (529)
T ss_dssp             TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHHT--TC
T ss_pred             CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhc--cC
Confidence            567899999997654 56 8999999999999999999999999 99999999999987 3344999999999996  33


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCC-----hHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQES-----VDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLI  251 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~-----~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  251 (408)
                      .+ .+..+.  +.|++++|+.+|... +     ...+..++++|.+++.+.+....+....|++|.|+++|.++ +++++
T Consensus       194 ~~-~r~~i~--~~g~i~~Ll~lL~~~-~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~  268 (529)
T 3tpo_A          194 SA-FRDLVI--KHGAIDPLLALLAVP-DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVL  268 (529)
T ss_dssp             HH-HHHHHH--HTTCHHHHHHTTCSS-CGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-CHHHH
T ss_pred             HH-HHHHHH--HcCCcHHHHHHHhcc-chhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-cHHHH
Confidence            34 378887  899999999999865 3     34678899999999998765555554478999999999997 99999


Q ss_pred             HHHHHHHHHhccCcchHHH-HHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHH
Q 036338          252 EASLSCLITISSSKRAKTK-LINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQG  329 (408)
Q Consensus       252 ~~A~~aL~~Ls~~~~n~~~-~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~  329 (408)
                      ..|+++|.+|+.+..++.. +++.|+++.|+.+|.++                     +..++..|+.+|.+|+. +++.
T Consensus       269 ~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~---------------------~~~v~~~a~~aL~nl~~~~~~~  327 (529)
T 3tpo_A          269 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT---------------------ELPIVTPALRAIGNIVTGTDEQ  327 (529)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS---------------------CHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC---------------------ChhHHHHHHHHHHHHHccchHH
Confidence            9999999999998765554 55899999999999864                     78999999999999986 4666


Q ss_pred             HHHHHhhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036338          330 RMEICQDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFR  388 (408)
Q Consensus       330 ~~~~~~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~  388 (408)
                      +..+.. .|+++.|+.+|..                     ...+.+++.|+++.|+.+|+++. ..+|..|..+|..+.
T Consensus       328 ~~~i~~-~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nl~  405 (529)
T 3tpo_A          328 TQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKAAAWAITNYT  405 (529)
T ss_dssp             HHHHHH-TTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHH
T ss_pred             HHHHhh-cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence            666666 5999999986532                     45566788999999999998764 556777777777665


Q ss_pred             h
Q 036338          389 V  389 (408)
Q Consensus       389 ~  389 (408)
                      .
T Consensus       406 ~  406 (529)
T 3tpo_A          406 S  406 (529)
T ss_dssp             H
T ss_pred             c
Confidence            4

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.92  E-value=9e-23  Score=187.84  Aligned_cols=235  Identities=18%  Similarity=0.257  Sum_probs=200.6

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH  179 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~  179 (408)
                      .++.|++.|++++.+ +..|++.|.+++..++.++..+.+. |+++.|+.+|++++ ..+++.|+.+|.+|+.  ++++.
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~--~~~~~   78 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTSTD-SEVQKEAARALANIAS--GPDEA   78 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHTT--SCHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhCCC-HHHHHHHHHHHHHHHc--CChHH
Confidence            578999999999888 9999999999999888899999999 99999999999877 4455999999999997  43443


Q ss_pred             HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhh-cCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHH
Q 036338          180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIA-GDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCL  258 (408)
Q Consensus       180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL  258 (408)
                       +..+.  +.|+++.|+.+|+++ +.+++..|+++|.+|+ .+++++..+.. .|+++.|+++|+++ ++.++..|+++|
T Consensus        79 -~~~~~--~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~-~~~~~~~a~~~L  152 (252)
T 4hxt_A           79 -IKAIV--DAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTST-DSEVQKEAARAL  152 (252)
T ss_dssp             -HHHHH--HTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred             -HHHHH--HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCC-CHHHHHHHHHHH
Confidence             66676  899999999999998 9999999999999999 56678888887 89999999999987 899999999999


Q ss_pred             HHhccCcc-hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhh
Q 036338          259 ITISSSKR-AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQD  336 (408)
Q Consensus       259 ~~Ls~~~~-n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~  336 (408)
                      .+|+...+ ++..+++.|+++.|+.+|.++                     ++.++..|+++|.+|+. +++.+..    
T Consensus       153 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---------------------~~~v~~~a~~~L~~l~~~~~~~~~~----  207 (252)
T 4hxt_A          153 ANIASGPDEAIKAIVDAGGVEVLVKLLTST---------------------DSEVQKEAARALANIASGPTSAIKA----  207 (252)
T ss_dssp             HHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHTTSBHHHHHH----
T ss_pred             HHHHcCCHHHHHHHHHCcCHHHHHHHHCCC---------------------CHHHHHHHHHHHHHHHcCCHHHHHH----
Confidence            99998654 567888999999999999864                     78999999999999987 3433332    


Q ss_pred             cCchHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          337 AALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       337 ~g~i~~lv~~l~~~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                                        +.+.|+++.|+.+++. .++.+|+.|..+|..|..
T Consensus       208 ------------------l~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~  241 (252)
T 4hxt_A          208 ------------------IVDAGGVEVLQKLLTS-TDSEVQKEAQRALENIKS  241 (252)
T ss_dssp             ------------------HHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred             ------------------HHHCCCHHHHHHHHCC-CcHHHHHHHHHHHHHHHc
Confidence                              2345677777777764 457889999999998887

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.91  E-value=4.5e-23  Score=212.10  Aligned_cols=259  Identities=12%  Similarity=0.203  Sum_probs=213.4

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc----chhhHHHHHHHHHHhccc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN----DVNMLKQVIRVLDLILNK  173 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~----~~~~~e~A~~~L~~L~~~  173 (408)
                      .+.|+.|+..|.+++.+ +..|+++|.+++.+++.+|..+.+. |++++|+.+|...+    ....++.++++|.+++. 
T Consensus       161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~-g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~-  238 (529)
T 3tpo_A          161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR-  238 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHc-CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh-
Confidence            45789999999999988 9999999999999999999999999 99999999998765    23456889999999986 


Q ss_pred             ccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHH
Q 036338          174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEA  253 (408)
Q Consensus       174 ~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  253 (408)
                       +..+. .....  ..|++|.|+++|.++ +.+++..|+++|.+++...+.+..+....|+++.|+.+|.++ +..++..
T Consensus       239 -~~~~~-~~~~~--~~~~lp~L~~LL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~  312 (529)
T 3tpo_A          239 -NKNPA-PPLDA--VEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTP  312 (529)
T ss_dssp             -CCTTC-CCHHH--HHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHH
T ss_pred             -cccch-hhHHH--HhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHH
Confidence             43332 22222  468899999999999 999999999999999988765554443489999999999987 8999999


Q ss_pred             HHHHHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHH
Q 036338          254 SLSCLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQGRM  331 (408)
Q Consensus       254 A~~aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~  331 (408)
                      |+++|+|++.+. .++..+++.|+++.|+.+|.++                     +..+++.|+++|.||+.+ ++.+.
T Consensus       313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~---------------------~~~i~~~a~~aL~nl~~~~~~~~~  371 (529)
T 3tpo_A          313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP---------------------KTNIQKEATWTMSNITAGRQDQIQ  371 (529)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS---------------------SHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC---------------------CHHHHHHHHHHHHHHhcccHHHHH
Confidence            999999998865 4677778999999999999865                     789999999999999975 55555


Q ss_pred             HHHhhcCchHHHHHHHHH----------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036338          332 EICQDAALLNGVVQKMLK----------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFR  388 (408)
Q Consensus       332 ~~~~~~g~i~~lv~~l~~----------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~  388 (408)
                      .+.. .|++|.|+.+|..                      +....+++.|++++|+.+|.+. ++.++..+...|..+-
T Consensus       372 ~v~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil  448 (529)
T 3tpo_A          372 QVVN-HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIF  448 (529)
T ss_dssp             HHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHH
T ss_pred             HHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence            5555 5999999996544                      2345577899999999999765 5667887777766554

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.91  E-value=7.6e-23  Score=189.20  Aligned_cols=236  Identities=17%  Similarity=0.261  Sum_probs=196.2

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      ....+.++..|++++.+ +..|++.|+.+...++.++..+.+. |+|+.|+.+|++.+ ..+++.|+.+|.+++.  +++
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~--~~~   86 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSSPN-EQILQEALWALSNIAS--GGN   86 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGGCSC-HHHHHHHHHHHHHHTT--SCH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhc--CCH
Confidence            34577899999999988 9999999988776678889999999 99999999999877 4455999999999996  444


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh-hHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK-VKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      +. +..+.  +.|+++.|+.+|+++ +.+++..|+++|.+|+.+++.+ ..+.. .|+++.|+++|+++ ++.+++.|++
T Consensus        87 ~~-~~~i~--~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~-~~~v~~~a~~  160 (252)
T 4db8_A           87 EQ-IQAVI--DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSP-NEQILQEALW  160 (252)
T ss_dssp             HH-HHHHH--HTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHGGGCS-CHHHHHHHHH
T ss_pred             HH-HHHHH--HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHH-CCCHHHHHHHHhCC-CHHHHHHHHH
Confidence            43 66666  889999999999998 9999999999999999999888 66766 89999999999987 8999999999


Q ss_pred             HHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHH
Q 036338          257 CLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEIC  334 (408)
Q Consensus       257 aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~  334 (408)
                      +|.+|+... .++..+++.|+++.|+.+|.++                     +..+++.|+++|.+|+. +++++..+.
T Consensus       161 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~  219 (252)
T 4db8_A          161 ALSNIASGGNEQIQAVIDAGALPALVQLLSSP---------------------NEQILQEALWALSNIASGGNEQKQAVK  219 (252)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS---------------------SHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC---------------------CHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            999999865 5677778999999999999864                     88999999999999985 444444333


Q ss_pred             hhcCchHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036338          335 QDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFR  388 (408)
Q Consensus       335 ~~~g~i~~lv~~l~~~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~  388 (408)
                                            +.|+++.|+.++++. ++.+|+.|..+|..|.
T Consensus       220 ----------------------~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          220 ----------------------EAGALEKLEQLQSHE-NEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             ----------------------HTTHHHHHHTTTTCS-SSHHHHTHHHHHHTTC
T ss_pred             ----------------------HCCcHHHHHHHhCCC-CHHHHHHHHHHHHHHh
Confidence                                  445666666666544 5668888877776654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.90  E-value=1.8e-22  Score=207.00  Aligned_cols=262  Identities=14%  Similarity=0.187  Sum_probs=217.4

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhCh-hhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESD-ENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~-~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      ...++.|++.|.+++.+ +..|++.|+.++.... ..+..+++. |+||.|+.+|.++++..+++.|+++|.+++.  ++
T Consensus        73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~-g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~--~~  149 (528)
T 4b8j_A           73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVQFLTREDFPQLQFEAAWALTNIAS--GT  149 (528)
T ss_dssp             --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHT-TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--SC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC-CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--CC
Confidence            45689999999999888 9999999999976544 667888888 9999999999887534556999999999997  44


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASL  255 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~  255 (408)
                      .+. +..+.  +.|+++.|+.+|.++ +.+++..|+++|.+|+.+. +.+..+.. .|++++|+.+|....+..+++.|+
T Consensus       150 ~~~-~~~~~--~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~v~~~a~  224 (528)
T 4b8j_A          150 SEN-TKVVI--DHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKCRDLVLA-NGALLPLLAQLNEHTKLSMLRNAT  224 (528)
T ss_dssp             HHH-HHHHH--HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHHHHHHTCCTTCCHHHHHHHH
T ss_pred             HHH-HHHHH--hCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHHHHHHHHhcCCCHHHHHHHH
Confidence            443 56666  789999999999998 9999999999999999774 46777776 799999999995444899999999


Q ss_pred             HHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHh
Q 036338          256 SCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQ  335 (408)
Q Consensus       256 ~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  335 (408)
                      ++|++|+....+.......|+++.|+.+|.+.                     +..++..|+++|.+|+.....+.+.+.
T Consensus       225 ~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~---------------------~~~v~~~a~~aL~~l~~~~~~~~~~~~  283 (528)
T 4b8j_A          225 WTLSNFCRGKPQPSFEQTRPALPALARLIHSN---------------------DEEVLTDACWALSYLSDGTNDKIQAVI  283 (528)
T ss_dssp             HHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC---------------------CHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             HHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC---------------------CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999866555666799999999999854                     789999999999999987666654544


Q ss_pred             hcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          336 DAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       336 ~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      ..|+++.|+++|..                     ...+.+++.|+++.|+.+|+....+.+++.|..+|..|..
T Consensus       284 ~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~  358 (528)
T 4b8j_A          284 EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA  358 (528)
T ss_dssp             HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence            46999999996543                     3455677899999999999876578889999888888875

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.90  E-value=6.5e-23  Score=187.62  Aligned_cols=218  Identities=15%  Similarity=0.105  Sum_probs=169.5

Q ss_pred             ChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 036338          142 GLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG  220 (408)
Q Consensus       142 G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~  220 (408)
                      -.+|.||.+|.+++ +.+++..|++.|.+|+.  .+++. +..|.  +.|+||+||++|+++ +.++|+.|+++|.+|+.
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~--~~~~~-r~~I~--~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~   81 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECF--QKSEA-RKRVN--QLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVF   81 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHH--HCHHH-HHHHH--HTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHc--CCcHH-HHHHH--HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHh
Confidence            46899999999887 34666889999999986  44443 66776  899999999999999 99999999999999998


Q ss_pred             -CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCC
Q 036338          221 -DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGN  299 (408)
Q Consensus       221 -~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~  299 (408)
                       ++++|..|.+ .|+||+||++|++..+.++++.|+++||||+..+.+|..+++. +||+|++++..+..  |...+   
T Consensus        82 ~~~~nk~~I~~-~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~s--G~~~~---  154 (233)
T 3tt9_A           82 EDNDNKLEVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFS--GWPEG---  154 (233)
T ss_dssp             TCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHH--CCCGG---
T ss_pred             CCHHHHHHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhcccc--CCccc---
Confidence             4789999998 8999999999985338899999999999999999999999974 79999998742200  00000   


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhcCCHHHHH
Q 036338          300 GNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQ  378 (408)
Q Consensus       300 ~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g~i~~lv~~l~~~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~  378 (408)
                      .........+..++++|.++|+||+. ++++|+++.+.+|+|+.||.++.     .-+.           ....+++.+|
T Consensus       155 ~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~-----~~~~-----------~~~~~~k~~E  218 (233)
T 3tt9_A          155 DYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVR-----GTIA-----------DYQPDDKATE  218 (233)
T ss_dssp             GCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHH-----HHHH-----------TTCTTCHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHH-----hhhh-----------cccchhHHHH
Confidence            00000112467999999999999987 68999999987788899998522     1110           1233566789


Q ss_pred             HHHHHHHHHh
Q 036338          379 MSADLLKIFR  388 (408)
Q Consensus       379 ~A~~lL~~l~  388 (408)
                      .|..+|+.|+
T Consensus       219 n~v~~L~nLs  228 (233)
T 3tt9_A          219 NCVCILHNLS  228 (233)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9988888776

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.90  E-value=1.7e-21  Score=199.73  Aligned_cols=257  Identities=15%  Similarity=0.165  Sum_probs=216.3

Q ss_pred             HHHHHHHHHHhcCC-hh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338          100 DEVKDIIRVAISKN-ED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus       100 ~~i~~Lv~~L~s~~-~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      +.++.|++.|.+.+ ++ +..|++.|.+++.++++++..+++. |+||.|+.+|.+++ ..+++.|+++|.+|+.  ...
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~--~~~  192 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDH-GAVPIFVKLLGSSS-DDVREQAVWALGNVAG--DSP  192 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHHH--TCH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC-CcHHHHHHHhcCCC-HHHHHHHHHHHHHHhC--CCh
Confidence            46889999999886 66 9999999999999889999999999 99999999999876 3455999999999986  333


Q ss_pred             HHHHHHHhccCcccHHHHHHHH-hcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVL-KQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL-~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      . .+..+.  +.|++++|+.+| .+. +..++..|+++|.+|+........... .|+++.|+.+|.++ ++.++..|++
T Consensus       193 ~-~~~~i~--~~g~l~~Ll~lL~~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~-~~~v~~~a~~  266 (528)
T 4b8j_A          193 K-CRDLVL--ANGALLPLLAQLNEHT-KLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSN-DEEVLTDACW  266 (528)
T ss_dssp             H-HHHHHH--HTTCHHHHHHTCCTTC-CHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCC-CHHHHHHHHH
T ss_pred             h-hHHHHH--HCCcHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCC-CHHHHHHHHH
Confidence            3 366776  789999999999 455 899999999999999988654555555 79999999999987 8999999999


Q ss_pred             HHHHhccCcchH-HHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHH
Q 036338          257 CLITISSSKRAK-TKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEIC  334 (408)
Q Consensus       257 aL~~Ls~~~~n~-~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~  334 (408)
                      +|.+|+....++ ..+++.|+++.|+.+|.++                     +..++..|+++|.+|+. .+..+..+.
T Consensus       267 aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~---------------------~~~v~~~a~~~L~nl~~~~~~~~~~~~  325 (528)
T 4b8j_A          267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP---------------------SPSVLIPALRTVGNIVTGDDAQTQCII  325 (528)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC---------------------ChhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999887765 4666899999999999864                     77999999999999997 566666666


Q ss_pred             hhcCchHHHHHHHHH----------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          335 QDAALLNGVVQKMLK----------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       335 ~~~g~i~~lv~~l~~----------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      . .|++|.|+++|..                      +..+.+++.|+++.|+.+|+.. .+.+|+.|..+|..+..
T Consensus       326 ~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~  400 (528)
T 4b8j_A          326 D-HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATS  400 (528)
T ss_dssp             T-TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred             H-hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHc
Confidence            5 5999999996643                      2345567789999999999876 67789988888888776

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=5.9e-22  Score=178.23  Aligned_cols=196  Identities=20%  Similarity=0.300  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338          100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ  178 (408)
Q Consensus       100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~  178 (408)
                      ...+.|+..|++.+.+ +..|++.|.+++..++.++..+.+. |+++.|+.+|++++ ..+++.|+++|.+|+.  ++++
T Consensus        12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~--~~~~   87 (210)
T 4db6_A           12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSPN-EQILQEALWALSNIAS--GGNE   87 (210)
T ss_dssp             -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHTT--SCHH
T ss_pred             chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhc--CCcH
Confidence            4467788999999888 9999999999998889999999999 99999999999876 4455999999999986  4444


Q ss_pred             HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                      . +..+.  +.|+++.|+.+|+++ +..++..|+++|.+|+... +.+..+.. .|+++.|+++|+++ ++.+++.|+++
T Consensus        88 ~-~~~i~--~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~-~~~v~~~a~~a  161 (210)
T 4db6_A           88 Q-IQAVI--DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSP-NEQILQEALWA  161 (210)
T ss_dssp             H-HHHHH--HTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             H-HHHHH--HCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCC-CHHHHHHHHHH
Confidence            3 56666  899999999999999 9999999999999999755 45566666 89999999999997 89999999999


Q ss_pred             HHHhccC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338          258 LITISSS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT  326 (408)
Q Consensus       258 L~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~  326 (408)
                      |.+|+.. ++++..+++.|+++.|+.++.++                     +..+++.|+.+|.+|+.+
T Consensus       162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---------------------~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHE---------------------NEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS---------------------CHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC---------------------CHHHHHHHHHHHHHHhcC
Confidence            9999997 66888888999999999999864                     889999999999999863

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.88  E-value=3.9e-23  Score=163.36  Aligned_cols=77  Identities=32%  Similarity=0.421  Sum_probs=71.2

Q ss_pred             CCcCCCCCCcccccCccccCCCceecCCC-CcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338            4 DDLYITVPSFFRCPISLDVMKSPVSLCTG-VTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus         4 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~cg-h~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      +.....+|++|+||||+++|+|||+++|| |+|||.||++||.. +.+||.|++++...+++||..|++.|+.|+.++.
T Consensus        13 ~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~   90 (98)
T 1wgm_A           13 EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK   90 (98)
T ss_dssp             CCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred             hhhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcc
Confidence            34556789999999999999999999999 99999999999985 6789999999999999999999999999999876

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.88  E-value=7.6e-21  Score=194.11  Aligned_cols=279  Identities=18%  Similarity=0.190  Sum_probs=222.1

Q ss_pred             HHHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIRVAISK-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      .+.++.|++.|.++ +.+ +..|+..|++++.. ++++..+.+. |+||.|+.+|++++ ..++..|+.+|.+|+.  .+
T Consensus        58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~-g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~--~~  132 (529)
T 1jdh_A           58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKS-GGIPALVKMLGSPV-DSVLFYAITTLHNLLL--HQ  132 (529)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHHH--HC
T ss_pred             cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHc-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhc--CC
Confidence            56789999999865 667 89999999999876 6699999999 99999999999877 4455999999999987  43


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD-ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASL  255 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~  255 (408)
                      ++. +..+.  +.|+++.|+++|+++ +.+.+..++.+|.+++.. ++++..+.. .|+++.|+++|+++.+...+..+.
T Consensus       133 ~~~-~~~i~--~~g~i~~L~~ll~~~-~~~~~~~~~~~L~~la~~~~~~~~~i~~-~~~i~~L~~ll~~~~~~~~~~~a~  207 (529)
T 1jdh_A          133 EGA-KMAVR--LAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTS  207 (529)
T ss_dssp             TTH-HHHHH--HHTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             cch-HHHHH--HcCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHhCChHHHHHHHH
Confidence            443 66666  889999999999998 999999999999999975 678888887 799999999999876667888899


Q ss_pred             HHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCC----------CCCCCCCCCCCCC---------CCCCCCcchHHHH
Q 036338          256 SCLITISSSKRAKTKLINHKLITELGKLITDGHNG----------NGSGNGNGNGNGN---------GSGNGTVLITEKA  316 (408)
Q Consensus       256 ~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~----------~~~~~~~~~~~~~---------~~~~~~~~~~~~a  316 (408)
                      .+|++|+.+++++..+++.|+++.|+.++.++...          +-+..... ....         .-.+.++.+++.|
T Consensus       208 ~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a  286 (529)
T 1jdh_A          208 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCA  286 (529)
T ss_dssp             HHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT-CSCCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh-hHHHHhHHHHHHHHHcCCCHHHHHHH
Confidence            99999999999999999999999999988652000          00000000 0000         0013467889999


Q ss_pred             HHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHH--------------------------HHHHHHHhcCcHHHHHHHHh
Q 036338          317 LRLVEILSTT-KQGRMEICQDAALLNGVVQKMLK--------------------------TAQEAVSSSNVLTKILLLMQ  369 (408)
Q Consensus       317 ~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~--------------------------~~~~~~~~~g~~~~Ll~ll~  369 (408)
                      +++|.+|+.. ++++..+... |+++.|+++|..                          ..+..+++.|+++.|+.+|+
T Consensus       287 ~~~L~~L~~~~~~~~~~~~~~-~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~  365 (529)
T 1jdh_A          287 AGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH  365 (529)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTS
T ss_pred             HHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhc
Confidence            9999999875 6788888875 899999997753                          13456778899999999998


Q ss_pred             hcCCHHHHHHHHHHHHHHhh
Q 036338          370 SNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       370 ~~~~~~~k~~A~~lL~~l~~  389 (408)
                      +...+.+++.|..+|..+..
T Consensus       366 ~~~~~~v~~~a~~~l~nl~~  385 (529)
T 1jdh_A          366 PPSHWPLIKATVGLIRNLAL  385 (529)
T ss_dssp             TTCCHHHHHHHHHHHHHHTT
T ss_pred             cccchHHHHHHHHHHHHHhc
Confidence            87766788888788887765

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.88  E-value=3.7e-23  Score=159.41  Aligned_cols=76  Identities=33%  Similarity=0.425  Sum_probs=70.2

Q ss_pred             CcCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338            5 DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      .....+|++|+||||+++|+|||+++|||+|||.||++||.. +.+||.|++++...+++||..+++.|+.|+.++.
T Consensus         6 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~   81 (85)
T 2kr4_A            6 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ   81 (85)
T ss_dssp             CCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             hhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence            345678999999999999999999999999999999999985 6789999999998999999999999999998764

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.88  E-value=6.4e-23  Score=162.77  Aligned_cols=75  Identities=33%  Similarity=0.435  Sum_probs=70.0

Q ss_pred             cCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338            6 LYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      ....+|++|+||||+++|+|||+++|||+|||.||++||. ++.+||.|+++++..+++||..|++.|+.|+.++.
T Consensus        22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~   96 (100)
T 2kre_A           22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ   96 (100)
T ss_dssp             SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred             hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence            4457899999999999999999999999999999999998 46789999999999999999999999999999876

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.87  E-value=8.1e-21  Score=194.96  Aligned_cols=258  Identities=15%  Similarity=0.169  Sum_probs=214.1

Q ss_pred             HHHHHHHHHHhcCChh-HHHHHHHHHHHhhh-ChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338          100 DEVKDIIRVAISKNED-FSENLTKIVAFAKE-SDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus       100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~-~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      ..++.+++.|++++.+ +..|+..|+.+... +...+..+++. |++|.|+.+|.++++..++..|+++|.+++.  ++.
T Consensus        87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~-g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~--~~~  163 (530)
T 1wa5_B           87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQA-GVVPRLVEFMRENQPEMLQLEAAWALTNIAS--GTS  163 (530)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHT-TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTT--SCH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHC-CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--CCH
Confidence            4588999999998888 99999999999654 34556778888 9999999999987434455999999999997  444


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      +. +..+.  +.|+++.|+.+|.++ +.++|..|+++|.+|+.+. +.+..+.. .|++++|+.+|.+. +..+++.|++
T Consensus       164 ~~-~~~~~--~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~-~~~v~~~a~~  237 (530)
T 1wa5_B          164 AQ-TKVVV--DADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFNSN-KPSLIRTATW  237 (530)
T ss_dssp             HH-HHHHH--HTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGGSC-CHHHHHHHHH
T ss_pred             HH-HHHHH--HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHH-cCcHHHHHHHhccC-CHHHHHHHHH
Confidence            43 55565  789999999999998 9999999999999999874 57777776 79999999999985 8999999999


Q ss_pred             HHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHHHHH
Q 036338          257 CLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQGRMEIC  334 (408)
Q Consensus       257 aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~  334 (408)
                      +|.+|+.+. .+.......|+++.|+.+|.+.                     +..++..|+++|.+|+.. ++.+..+.
T Consensus       238 ~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~---------------------d~~v~~~a~~~L~~L~~~~~~~~~~~~  296 (530)
T 1wa5_B          238 TLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM---------------------DTETLVDACWAISYLSDGPQEAIQAVI  296 (530)
T ss_dssp             HHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC---------------------CHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC---------------------CHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            999999876 5555666799999999999854                     789999999999999975 66667666


Q ss_pred             hhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          335 QDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       335 ~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      . .|+++.|+++|..                     ...+.+++.|+++.|+.+|+.. .+.+|+.|..+|..+..
T Consensus       297 ~-~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~  370 (530)
T 1wa5_B          297 D-VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA  370 (530)
T ss_dssp             H-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred             h-cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence            6 4899999996533                     3345566789999999999866 57789999888888875

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.87  E-value=2.2e-20  Score=191.80  Aligned_cols=257  Identities=13%  Similarity=0.127  Sum_probs=214.5

Q ss_pred             HHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338          100 DEVKDIIRVAISK-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus       100 ~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      +.++.|++.|.+. +.+ +..|++.|.+++..++..+..+++. |+++.|+.+|.+++ ..+++.|+++|.+|+.  ..+
T Consensus       130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~--~~~  205 (530)
T 1wa5_B          130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA-DAVPLFIQLLYTGS-VEVKEQAIWALGNVAG--DST  205 (530)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TCHHHHHHHHHHCC-HHHHHHHHHHHHHHHT--TCH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhC--CCc
Confidence            4588999999887 677 9999999999999888899999998 99999999999876 4455999999999996  333


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      .. +..+.  ..|+++.|+.+|.+. +.+++..|+++|.+|+... ........ .|+++.|+.+|.++ ++.++..|++
T Consensus       206 ~~-~~~~~--~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~-d~~v~~~a~~  279 (530)
T 1wa5_B          206 DY-RDYVL--QCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIYSM-DTETLVDACW  279 (530)
T ss_dssp             HH-HHHHH--HTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTTCC-CHHHHHHHHH
T ss_pred             cc-hHHHH--HcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHcCC-CHHHHHHHHH
Confidence            33 66666  789999999999998 9999999999999999875 44444444 78999999999987 8999999999


Q ss_pred             HHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHHHHH
Q 036338          257 CLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQGRMEIC  334 (408)
Q Consensus       257 aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~  334 (408)
                      +|.+|+... +.+..+++.|+++.|+.+|.++                     +..++..|+.+|.+|+.. ++....+.
T Consensus       280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~---------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~  338 (530)
T 1wa5_B          280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHE---------------------STLVQTPALRAVGNIVTGNDLQTQVVI  338 (530)
T ss_dssp             HHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS---------------------CHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC---------------------ChhhHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999865 4677777899999999999864                     789999999999999964 55566665


Q ss_pred             hhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          335 QDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       335 ~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      . .|+++.|+.+|..                     +..+.+++.|+++.|+.+|+.. .+.+|..|..+|..+..
T Consensus       339 ~-~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~  412 (530)
T 1wa5_B          339 N-AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASS  412 (530)
T ss_dssp             H-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred             H-cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHh
Confidence            5 4899999986533                     3445566789999999999764 57789988888887765

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.87  E-value=5.2e-20  Score=183.90  Aligned_cols=257  Identities=16%  Similarity=0.168  Sum_probs=211.3

Q ss_pred             HHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338          100 DEVKDIIRVAISK-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus       100 ~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      +.++.|++.|++. +.+ +..|++.|.+++..++++...+.+. |++|.|+.+|++++ ..+++.|+++|.+++.  .+.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~--~~~  139 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQA-GAVPIFIELLSSEF-EDVQEQAVWALGNIAG--DST  139 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHHT--TCH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhC-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHcc--CCH
Confidence            6789999999988 677 9999999999999888888888888 99999999999876 3445999999999996  443


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc--chhhHHhhhcChHHHHHHhcccCCCHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA--DSKVKIAERDGLLAETVKSLSLDSDRRLIEASL  255 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~  255 (408)
                      +. +..+.  +.|+++.|+.+|.+..+.+++..|+++|.+|+...  ..+..+.  .++++.|+++|+++ ++.++..|+
T Consensus       140 ~~-~~~~~--~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~~~-~~~v~~~a~  213 (450)
T 2jdq_A          140 MC-RDYVL--DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV--SPCLNVLSWLLFVS-DTDVLADAC  213 (450)
T ss_dssp             HH-HHHHH--HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT--GGGHHHHHHHTTCC-CHHHHHHHH
T ss_pred             HH-HHHHH--HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH--HHHHHHHHHHHccC-CHHHHHHHH
Confidence            33 66666  78999999999996328999999999999999764  3333333  68999999999987 899999999


Q ss_pred             HHHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHH-HHHHH
Q 036338          256 SCLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQ-GRMEI  333 (408)
Q Consensus       256 ~aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~  333 (408)
                      ++|.+|+... +++..+++.|+++.|+.+|.++                     +..+++.|+.+|.+|+...+ .+..+
T Consensus       214 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---------------------~~~v~~~a~~~L~~l~~~~~~~~~~~  272 (450)
T 2jdq_A          214 WALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN---------------------DYKVVSPALRAVGNIVTGDDIQTQVI  272 (450)
T ss_dssp             HHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC---------------------chhHHHHHHHHHHHHhhCChHHHHHH
Confidence            9999999865 5677777999999999999854                     78999999999999997644 44445


Q ss_pred             HhhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          334 CQDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       334 ~~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      .. .|+++.|+++|..                     +..+.+++.|+++.|+.+|+.. .+.+|..|..+|..+..
T Consensus       273 ~~-~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~  347 (450)
T 2jdq_A          273 LN-CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATS  347 (450)
T ss_dssp             HT-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred             HH-CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHc
Confidence            55 5899999986533                     3445566789999999999865 57788888888887765

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.87  E-value=2.2e-20  Score=196.44  Aligned_cols=279  Identities=18%  Similarity=0.188  Sum_probs=220.5

Q ss_pred             HHHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIRVAISK-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      .+.++.|++.|.++ +.+ +..|+..|+.++.. ++++..+.+. |+|+.|+.+|++++ ..+++.|+.+|.+|+.  .+
T Consensus        55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~-g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~--~~  129 (644)
T 2z6h_A           55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKS-GGIPALVKMLGSPV-DSVLFYAITTLHNLLL--HQ  129 (644)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTT-THHHHHHHHTTCSS-HHHHHHHHHHHHHHHH--HS
T ss_pred             cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHc-CCHHHHHHHHhCCC-HHHHHHHHHHHHHHHh--Cc
Confidence            46789999999876 666 89999999999876 5699999999 99999999999876 4455999999999986  43


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc-CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG-DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASL  255 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~  255 (408)
                      ++. +..+.  +.|+++.|+++|+++ +...+..++.+|.+|+. +++++..+.. .|+++.|+++|+++.....++.++
T Consensus       130 ~~~-~~~v~--~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~~a~  204 (644)
T 2z6h_A          130 EGA-KMAVR--LAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTS  204 (644)
T ss_dssp             TTH-HHHHH--HTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             chh-HHHHH--HCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHhcCcHHHHHHHH-cCChHHHHHHHHcCChHHHHHHHH
Confidence            343 55665  789999999999998 88888888999999996 6788888888 799999999999875678889999


Q ss_pred             HHHHHhccCcchHHHHHhcCcHHHHHHHhccCC----------CCCCCCCCCCCCCCC---------CCCCCCcchHHHH
Q 036338          256 SCLITISSSKRAKTKLINHKLITELGKLITDGH----------NGNGSGNGNGNGNGN---------GSGNGTVLITEKA  316 (408)
Q Consensus       256 ~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~----------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a  316 (408)
                      .+|++|+.++.++..+++.|+++.|+.++.+..          .++-+.+... ....         .-.+.+..+++.|
T Consensus       205 ~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~-~~~~~~~i~~Lv~lL~~~d~~v~~~a  283 (644)
T 2z6h_A          205 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCA  283 (644)
T ss_dssp             HHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT-CCSCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh-hhhhhhHHHHHHHHHcCCCHHHHHHH
Confidence            999999999999999999999999998886420          0000000000 0000         0012467889999


Q ss_pred             HHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHH--------------------------HHHHHHHhcCcHHHHHHHHh
Q 036338          317 LRLVEILSTT-KQGRMEICQDAALLNGVVQKMLK--------------------------TAQEAVSSSNVLTKILLLMQ  369 (408)
Q Consensus       317 ~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~--------------------------~~~~~~~~~g~~~~Ll~ll~  369 (408)
                      +++|.+|+.. ++++..+... |+++.|+++|..                          ..+..++..|+++.|+.+|+
T Consensus       284 ~~aL~~L~~~~~~~~~~v~~~-g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~  362 (644)
T 2z6h_A          284 AGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH  362 (644)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhC
Confidence            9999999874 6788888774 899999997754                          01233667899999999998


Q ss_pred             hcCCHHHHHHHHHHHHHHhh
Q 036338          370 SNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       370 ~~~~~~~k~~A~~lL~~l~~  389 (408)
                      +...+.+++.|..+|..|..
T Consensus       363 ~~~~~~v~~~a~~~L~nLa~  382 (644)
T 2z6h_A          363 PPSHWPLIKATVGLIRNLAL  382 (644)
T ss_dssp             TTCCHHHHHHHHHHHHHHTT
T ss_pred             ccCchHHHHHHHHHHHHHcc
Confidence            77666788888888888775

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.86  E-value=4.8e-20  Score=188.13  Aligned_cols=260  Identities=10%  Similarity=0.148  Sum_probs=213.3

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      .+.++.|++.|++.++. +..|+..|.+++.+ +.++..+.+.+|+++.|+.+|.+..+..++..|+.+|.+|+.  .++
T Consensus        16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~--~~~   92 (529)
T 1jdh_A           16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH--HRE   92 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT--SHH
T ss_pred             HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--Cch
Confidence            56799999999988888 99999999999975 557766665449999999999876434455999999999987  444


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      +  +..+.  +.|+++.|+++|+++ +.+++..|+++|.+|+.++ +.+..+.+ .|+++.|+++|+++ +.+++..++.
T Consensus        93 ~--~~~i~--~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~~~-~~~~~~~~~~  165 (529)
T 1jdh_A           93 G--LLAIF--KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT-NVKFLAITTD  165 (529)
T ss_dssp             H--HHHHH--HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCC-CHHHHHHHHH
T ss_pred             h--HHHHH--HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHH-cCCHHHHHHHHhcC-CHHHHHHHHH
Confidence            3  66666  789999999999999 9999999999999999874 56667766 89999999999987 8899999999


Q ss_pred             HHHHhccC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHh
Q 036338          257 CLITISSS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQ  335 (408)
Q Consensus       257 aL~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  335 (408)
                      +|.+|+.. ++++..+++.|+++.|+.+|++.                    ......+.+..+|.+|+.+++++..++.
T Consensus       166 ~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~--------------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~  225 (529)
T 1jdh_A          166 CLQILAYGNQESKLIILASGGPQALVNIMRTY--------------------TYEKLLWTTSRVLKVLSVCSSNKPAIVE  225 (529)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC--------------------ChHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence            99999985 67899999999999999999863                    3456778889999999998999988887


Q ss_pred             hcCchHHHHHHHH--------------------------------------H----------------------HHHHHH
Q 036338          336 DAALLNGVVQKML--------------------------------------K----------------------TAQEAV  355 (408)
Q Consensus       336 ~~g~i~~lv~~l~--------------------------------------~----------------------~~~~~~  355 (408)
                      . |+++.|++++.                                      +                      +.++.+
T Consensus       226 ~-g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~  304 (529)
T 1jdh_A          226 A-GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV  304 (529)
T ss_dssp             T-THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             C-CCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            5 77776653221                                      1                      355667


Q ss_pred             HhcCcHHHHHHHHhhcC-CHHHHHHHHHHHHHHhh
Q 036338          356 SSSNVLTKILLLMQSNC-TPAVRQMSADLLKIFRV  389 (408)
Q Consensus       356 ~~~g~~~~Ll~ll~~~~-~~~~k~~A~~lL~~l~~  389 (408)
                      .+.|+++.|+.+|.... .+.+++.|..+|..|..
T Consensus       305 ~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~  339 (529)
T 1jdh_A          305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence            78899999999997643 47789999888887765

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.86  E-value=1.3e-19  Score=172.19  Aligned_cols=225  Identities=14%  Similarity=0.135  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHH-HhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHH
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVE-ILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNS  194 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~-lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~  194 (408)
                      +..|+..|..++.. ..+...+.+. |++|+|+. +|.+++ ..+++.|+++|++++.  +++.. +..+.  +.|++++
T Consensus        57 k~~Al~~L~~lv~~-~dna~~~~~~-G~l~~Lv~~lL~s~~-~~vr~~Aa~~Lg~ia~--~n~~~-~~~vv--~~g~l~~  128 (296)
T 1xqr_A           57 REGALELLADLCEN-MDNAADFCQL-SGMHLLVGRYLEAGA-AGLRWRAAQLIGTCSQ--NVAAI-QEQVL--GLGALRK  128 (296)
T ss_dssp             HHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHTTTTCSS-HHHHHHHHHHHHHHHT--TCHHH-HHHHH--HTTHHHH
T ss_pred             HHHHHHHHHHHHhC-hhhHHHHHHc-CCHHHHHHHHHcCCC-HHHHHHHHHHHHHHHh--CCHHH-HHHHH--HCCCHHH
Confidence            88899999999874 5688888999 99999999 999876 3445999999999997  44443 67777  8899999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccC-cchHHHHH
Q 036338          195 LLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSS-KRAKTKLI  272 (408)
Q Consensus       195 Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~-~~n~~~~~  272 (408)
                      |+.+|+++.+..++..|+++|.+|+.+. +....+.. .|++++|+.+|+++ +..++..|+++|.+|+.+ ++.+..++
T Consensus       129 Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~-~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv  206 (296)
T 1xqr_A          129 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLC  206 (296)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            9999996437899999999999999765 45556666 79999999999997 999999999999999875 56889999


Q ss_pred             hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHHHH
Q 036338          273 NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQGRMEICQDAALLNGVVQKMLKTA  351 (408)
Q Consensus       273 ~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~~~  351 (408)
                      +.|+|++|+.+|.++                     +..+++.|+.+|.+|+.. +..+......   -+.+..+ +++.
T Consensus       207 ~~g~i~~Lv~LL~~~---------------------d~~v~~~al~aL~~l~~~~~~~~~~~~~~---~~~l~~l-L~~~  261 (296)
T 1xqr_A          207 SMGMVQQLVALVRTE---------------------HSPFHEHVLGALCSLVTDFPQGVRECREP---ELGLEEL-LRHR  261 (296)
T ss_dssp             HTTHHHHHHHHHTSC---------------------CSTHHHHHHHHHHHHHTTCHHHHHHHHCG---GGCHHHH-HHHH
T ss_pred             HcCCHHHHHHHHcCC---------------------ChhHHHHHHHHHHHHHhCChhHHHHHhcc---HHHHHHH-HHHH
Confidence            999999999999864                     889999999999999975 4444444321   1223332 2121


Q ss_pred             HHHHHhcCcHHHHHHHHhh-cCCHHHHHHHHHHHHHHh
Q 036338          352 QEAVSSSNVLTKILLLMQS-NCTPAVRQMSADLLKIFR  388 (408)
Q Consensus       352 ~~~~~~~g~~~~Ll~ll~~-~~~~~~k~~A~~lL~~l~  388 (408)
                                   +..++. +......++|..++..+-
T Consensus       262 -------------~~~lq~~e~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          262 -------------CQLLQQHEEYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             -------------HHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred             -------------HHHccchHHHHHHHHHHHHHHHHHc
Confidence                         234453 224567788866666554

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.86  E-value=3.9e-20  Score=194.55  Aligned_cols=260  Identities=10%  Similarity=0.149  Sum_probs=216.3

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      .+.++.|++.|++.++. +..|+..|.+++.+. .++..+....|+++.|+.+|.+..+..++..|+.+|.+|+.  .++
T Consensus        13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~--~~~   89 (644)
T 2z6h_A           13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH--HRE   89 (644)
T ss_dssp             TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT--SHH
T ss_pred             hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc--Chh
Confidence            56789999999988888 999999999999875 56776665448999999999876444455999999999987  444


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      +  +..+.  +.|+++.|+++|+++ +..++..|+++|.+|+... +.+..+.. .|+++.|+++|+++ +++.+..++.
T Consensus        90 ~--~~~i~--~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~~~-~~~~~~~a~~  162 (644)
T 2z6h_A           90 G--LLAIF--KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT-NVKFLAITTD  162 (644)
T ss_dssp             H--HHHHH--TTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCC-CHHHHHHHHH
T ss_pred             h--HHHHH--HcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHCcC-CHHHHHHHHH
Confidence            3  66676  889999999999998 9999999999999999875 56666666 89999999999997 8889999999


Q ss_pred             HHHHhcc-CcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHh
Q 036338          257 CLITISS-SKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQ  335 (408)
Q Consensus       257 aL~~Ls~-~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  335 (408)
                      +|.+|+. +++++..+++.|+++.|+.+|++.                    ....+++.++.+|.+|+.+++++..++.
T Consensus       163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~--------------------~~~~~~~~a~~~L~nLs~~~~~~~~l~~  222 (644)
T 2z6h_A          163 CLQILAYGNQESKLIILASGGPQALVNIMRTY--------------------TYEKLLWTTSRVLKVLSVCSSNKPAIVE  222 (644)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTC--------------------CCHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcC--------------------ChHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence            9999997 677999999999999999999863                    2467789999999999999999999988


Q ss_pred             hcCchHHHHHHHH-----------------------------------H-------------------------HHHHHH
Q 036338          336 DAALLNGVVQKML-----------------------------------K-------------------------TAQEAV  355 (408)
Q Consensus       336 ~~g~i~~lv~~l~-----------------------------------~-------------------------~~~~~~  355 (408)
                      . |+++.|++++.                                   +                         +.++.+
T Consensus       223 ~-g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v  301 (644)
T 2z6h_A          223 A-GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV  301 (644)
T ss_dssp             T-THHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             C-CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5 77877765321                                   0                         345667


Q ss_pred             HhcCcHHHHHHHHhhcCC-HHHHHHHHHHHHHHhh
Q 036338          356 SSSNVLTKILLLMQSNCT-PAVRQMSADLLKIFRV  389 (408)
Q Consensus       356 ~~~g~~~~Ll~ll~~~~~-~~~k~~A~~lL~~l~~  389 (408)
                      ++.|+++.|+.+|....+ +.+++.|..+|..|..
T Consensus       302 ~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~  336 (644)
T 2z6h_A          302 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  336 (644)
T ss_dssp             HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence            788999999999987543 6789999888888864

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.86  E-value=1.6e-19  Score=180.42  Aligned_cols=259  Identities=13%  Similarity=0.180  Sum_probs=212.9

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      .+.++.|++.|++++++ +..|++.|.+++..++.++..+.+. |+++.|+.+|.+..+..+++.|+++|.+|+.  +..
T Consensus       106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~--~~~  182 (450)
T 2jdq_A          106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDC-NILPPLLQLFSKQNRLTMTRNAVWALSNLCR--GKS  182 (450)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC--CSS
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC--CCC
Confidence            35688999999998888 9999999999999888999999998 9999999999964434556999999999986  321


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      +..+..+   -.++++.|+.+|.++ +.+++..++++|.+|+... +.+..+.. .|+++.|+++|+++ ++.++..|++
T Consensus       183 ~~~~~~~---~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~-~~~v~~~a~~  256 (450)
T 2jdq_A          183 PPPEFAK---VSPCLNVLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHN-DYKVVSPALR  256 (450)
T ss_dssp             SCCCGGG---TGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCS-CHHHHHHHHH
T ss_pred             CCCCHHH---HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCC-chhHHHHHHH
Confidence            1102222   368999999999998 9999999999999999865 45566665 79999999999986 8999999999


Q ss_pred             HHHHhccCcch-HHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHH
Q 036338          257 CLITISSSKRA-KTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEIC  334 (408)
Q Consensus       257 aL~~Ls~~~~n-~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~  334 (408)
                      +|.+|+...+. +..+++.|+++.|+.+|.++                     +..++..|+++|.+|+. +++....+.
T Consensus       257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---------------------~~~vr~~a~~~L~~l~~~~~~~~~~~~  315 (450)
T 2jdq_A          257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSP---------------------KESIKKEACWTISNITAGNRAQIQTVI  315 (450)
T ss_dssp             HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS---------------------SHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHhhCChHHHHHHHHCccHHHHHHHHcCC---------------------CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999987664 45566899999999999864                     78999999999999996 677777777


Q ss_pred             hhcCchHHHHHHHHH----------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          335 QDAALLNGVVQKMLK----------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       335 ~~~g~i~~lv~~l~~----------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      .. |++|.|+++|..                      +..+.+++.|+++.|+.+|... ++.+++.|..+|..+..
T Consensus       316 ~~-~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  390 (450)
T 2jdq_A          316 DA-NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILR  390 (450)
T ss_dssp             HT-THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHH
T ss_pred             HC-CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            64 899999997654                      1233355779999999999765 67789999888877665

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.86  E-value=1.3e-20  Score=174.17  Aligned_cols=196  Identities=21%  Similarity=0.299  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      .+.++.|++.|++.+.+ +..|++.|.+++.+++.++..+.+. |+++.|+.+|++++ ..+++.|+++|.+|+.  ++.
T Consensus        53 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~--~~~  128 (252)
T 4db8_A           53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSPN-EQILQEALWALSNIAS--GGN  128 (252)
T ss_dssp             TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHGGGCSC-HHHHHHHHHHHHHHTT--SCH
T ss_pred             cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHcCCC-HHHHHHHHHHHHHhhc--CCc
Confidence            35688999999998887 9999999999999889999999999 99999999999876 4455999999999997  444


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      .. ...+.  +.|+++.|+++|+++ +.+++..|+++|.+|+... +.+..+.. .|+++.|+++|+++ ++.+++.|++
T Consensus       129 ~~-~~~~~--~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~-~~~v~~~a~~  202 (252)
T 4db8_A          129 EQ-IQAVI--DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSP-NEQILQEALW  202 (252)
T ss_dssp             HH-HHHHH--HTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHGGGCS-SHHHHHHHHH
T ss_pred             hH-HHHHH--HCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHCCC-CHHHHHHHHH
Confidence            42 25566  899999999999998 9999999999999999865 55566666 89999999999987 9999999999


Q ss_pred             HHHHhccC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          257 CLITISSS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       257 aL~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      +|.+|+.. +.++..+++.|+++.|+.++.+.                     ++.+++.|+++|.+|+.
T Consensus       203 ~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---------------------~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          203 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHE---------------------NEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS---------------------SSHHHHTHHHHHHTTC-
T ss_pred             HHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC---------------------CHHHHHHHHHHHHHHhc
Confidence            99999964 45777888999999999999864                     78999999999999975

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.84  E-value=9.8e-20  Score=163.63  Aligned_cols=195  Identities=17%  Similarity=0.259  Sum_probs=160.7

Q ss_pred             ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc-
Q 036338          142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG-  220 (408)
Q Consensus       142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~-  220 (408)
                      |..+.|+.+|.+.+ ..++..|+++|.+++.  .+++. +..+.  +.|+++.|+.+|+++ +.+++..|+++|.+|+. 
T Consensus        12 ~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~--~~~~~-~~~i~--~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~   84 (210)
T 4db6_A           12 SELPQMVQQLNSPD-QQELQSALRKLSQIAS--GGNEQ-IQAVI--DAGALPALVQLLSSP-NEQILQEALWALSNIASG   84 (210)
T ss_dssp             -CHHHHHHHTTCSC-HHHHHHHHHHHHHHHT--SCHHH-HHHHH--HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTS
T ss_pred             chhHHHHHHhcCCC-HHHHHHHHHHHHHHHc--CCHHH-HHHHH--HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcC
Confidence            88999999999877 3445999999999996  44443 56666  889999999999999 99999999999999996 


Q ss_pred             CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCC
Q 036338          221 DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGN  299 (408)
Q Consensus       221 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~  299 (408)
                      +++++..+.. .|+++.|+++|+++ ++.+++.|+++|.||+... +++..+++.|+++.|+.+|.++            
T Consensus        85 ~~~~~~~i~~-~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~------------  150 (210)
T 4db6_A           85 GNEQIQAVID-AGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP------------  150 (210)
T ss_dssp             CHHHHHHHHH-TTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS------------
T ss_pred             CcHHHHHHHH-CCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC------------
Confidence            5567788877 89999999999997 8999999999999999755 4667788999999999999864            


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhcCCHHHHH
Q 036338          300 GNGNGSGNGTVLITEKALRLVEILSTT-KQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQ  378 (408)
Q Consensus       300 ~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~  378 (408)
                               +..+++.|+++|.+|+.. ++++..+.                      +.|+++.|+.++++ .++.+|+
T Consensus       151 ---------~~~v~~~a~~aL~~l~~~~~~~~~~~~----------------------~~g~i~~L~~ll~~-~~~~v~~  198 (210)
T 4db6_A          151 ---------NEQILQEALWALSNIASGGNEQKQAVK----------------------EAGALEKLEQLQSH-ENEKIQK  198 (210)
T ss_dssp             ---------CHHHHHHHHHHHHHHHTSCHHHHHHHH----------------------HTTHHHHHHHGGGC-SCHHHHH
T ss_pred             ---------CHHHHHHHHHHHHHHHcCCcHHHHHHH----------------------HCCCHHHHHHHHhC-CCHHHHH
Confidence                     789999999999999875 55444333                      44666666666654 4677899


Q ss_pred             HHHHHHHHHhh
Q 036338          379 MSADLLKIFRV  389 (408)
Q Consensus       379 ~A~~lL~~l~~  389 (408)
                      .|..+|+.|..
T Consensus       199 ~a~~aL~~l~~  209 (210)
T 4db6_A          199 EAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHhc
Confidence            99888887764

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.84  E-value=3e-19  Score=191.63  Aligned_cols=280  Identities=17%  Similarity=0.198  Sum_probs=220.1

Q ss_pred             HHHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIRVAISK-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      ++.++.|++.|+++ +.+ +..|+..|.+++.. +.++..+.+. |+|+.|+.+|++++ ..++..|+.+|.+|+.  ..
T Consensus       191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~-g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~--~~  265 (780)
T 2z6g_A          191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKS-GGIPALVNMLGSPV-DSVLFHAITTLHNLLL--HQ  265 (780)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHHH--HS
T ss_pred             cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHc-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhC--CC
Confidence            46788999999866 666 99999999998875 6789999999 99999999999876 4455999999999997  43


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc-CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG-DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASL  255 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~  255 (408)
                      ++. +..+.  +.|+++.|+.+|.++ +..++..++.+|.+++. +++++..+.. .|+++.|+++|+++.....++.++
T Consensus       266 ~~~-~~~v~--~~g~v~~Lv~lL~~~-~~~v~~~a~~aL~~La~~~~e~~~~i~~-~~~i~~Lv~lL~~~~~~~~~~~a~  340 (780)
T 2z6g_A          266 EGA-KMAVR--LAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTS  340 (780)
T ss_dssp             TTH-HHHHH--HTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             hhh-HHHHH--HcCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHH
Confidence            443 66666  789999999999998 99999999999999997 4678888887 799999999999875566778899


Q ss_pred             HHHHHhccCcchHHHHHhcCcHHHHHHHhccCCC-------------CCCCCCCCCCCCC-----CCCCCCCcchHHHHH
Q 036338          256 SCLITISSSKRAKTKLINHKLITELGKLITDGHN-------------GNGSGNGNGNGNG-----NGSGNGTVLITEKAL  317 (408)
Q Consensus       256 ~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~-------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~  317 (408)
                      .+|++|+....++..+++.|+++.|+.+|.+...             -.......+....     ..-.+.+..+++.|+
T Consensus       341 ~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~  420 (780)
T 2z6g_A          341 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAA  420 (780)
T ss_dssp             HHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHH
Confidence            9999999999999999999999999998865200             0000000000000     000134678899999


Q ss_pred             HHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHH-----H---------------------HHHHHHhcCcHHHHHHHHhh
Q 036338          318 RLVEILSTT-KQGRMEICQDAALLNGVVQKMLK-----T---------------------AQEAVSSSNVLTKILLLMQS  370 (408)
Q Consensus       318 ~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~-----~---------------------~~~~~~~~g~~~~Ll~ll~~  370 (408)
                      ++|.+|+.. ++++..+.. .|+++.|+++|.+     +                     .+..++..|+++.|+.+|..
T Consensus       421 ~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~  499 (780)
T 2z6g_A          421 GILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP  499 (780)
T ss_dssp             HHHHHHTSSCHHHHHHHHT-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred             HHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcC
Confidence            999999875 677777776 4899999997754     0                     23456778999999999987


Q ss_pred             cCCHHHHHHHHHHHHHHhh
Q 036338          371 NCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       371 ~~~~~~k~~A~~lL~~l~~  389 (408)
                      ...+.+++.|..+|..|..
T Consensus       500 ~~~~~v~~~A~~aL~nLa~  518 (780)
T 2z6g_A          500 PSHWPLIKATVGLIRNLAL  518 (780)
T ss_dssp             TCCHHHHHHHHHHHHHHHS
T ss_pred             CChHHHHHHHHHHHHHHhc
Confidence            7766788888888888775

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.84  E-value=1.6e-19  Score=165.97  Aligned_cols=196  Identities=21%  Similarity=0.286  Sum_probs=172.1

Q ss_pred             HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338          100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ  178 (408)
Q Consensus       100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~  178 (408)
                      +.++.|++.|++++.+ +..|++.|.+++..++.++..+.+. |+++.|+.+|++++ ..+++.|+++|.+|+.  .+++
T Consensus        44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~l~~ll~~~~-~~v~~~a~~~L~~l~~--~~~~  119 (252)
T 4hxt_A           44 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA-GGVEVLVKLLTSTD-SEVQKEAARALANIAS--GPDE  119 (252)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTTCSS-HHHHHHHHHHHHHHTT--SCHH
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHHc--CCHH
Confidence            5688999999998888 9999999999999889999999999 99999999999766 4455999999999995  3444


Q ss_pred             HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc-hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD-SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                      . +..+.  +.|+++.|+++|+++ +.+++..|+++|.+|+...+ .+..+.. .|+++.|+.+|+++ ++.++..|+++
T Consensus       120 ~-~~~~~--~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~-~~~v~~~a~~~  193 (252)
T 4hxt_A          120 A-IKAIV--DAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTST-DSEVQKEAARA  193 (252)
T ss_dssp             H-HHHHH--HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             H-HHHHH--HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CcCHHHHHHHHCCC-CHHHHHHHHHH
Confidence            3 56666  789999999999999 99999999999999998654 4466666 89999999999986 89999999999


Q ss_pred             HHHhccC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338          258 LITISSS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT  326 (408)
Q Consensus       258 L~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~  326 (408)
                      |.+|+.. +.++..+++.|+++.|+.++.++                     +..+++.|+++|.+|+..
T Consensus       194 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~---------------------~~~v~~~a~~~L~~l~~~  242 (252)
T 4hxt_A          194 LANIASGPTSAIKAIVDAGGVEVLQKLLTST---------------------DSEVQKEAQRALENIKSG  242 (252)
T ss_dssp             HHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS---------------------CHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC---------------------cHHHHHHHHHHHHHHHcC
Confidence            9999984 55777888999999999999864                     789999999999999864

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.84  E-value=2.3e-21  Score=147.17  Aligned_cols=75  Identities=47%  Similarity=0.939  Sum_probs=70.6

Q ss_pred             CCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338            7 YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      +.+++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++...++.||..++++|++|.++++
T Consensus         2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~   76 (78)
T 1t1h_A            2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNG   76 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSC
T ss_pred             CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcC
Confidence            456899999999999999999999999999999999998777889999999998999999999999999999876

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.83  E-value=2.5e-21  Score=168.39  Aligned_cols=76  Identities=24%  Similarity=0.442  Sum_probs=70.5

Q ss_pred             cCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338            6 LYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      ....+|++|+||||+++|+|||+++|||+|||.||++||..+..+||.|+++++..+++||..|++.|+.|+..++
T Consensus        99 ~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~  174 (179)
T 2f42_A           99 KKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENG  174 (179)
T ss_dssp             GCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCT
T ss_pred             cccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCC
Confidence            3567899999999999999999999999999999999998754479999999998999999999999999999886

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.83  E-value=3e-19  Score=191.69  Aligned_cols=260  Identities=10%  Similarity=0.151  Sum_probs=211.8

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      .+.++.|++.|.+.+.. |..|+..|..++.. ..++..+.+.+|+|+.|+.+|.+..+..+++.|+.+|.+|+.  .++
T Consensus       149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~--~~~  225 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH--HRE  225 (780)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT--SHH
T ss_pred             hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC--Cch
Confidence            45688999999988877 99999999999875 567777775548999999999876434455999999999987  444


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      +  +..+.  +.|+|+.|+.+|+++ +..+|..|+++|.+|+.+. +.+..+.. .|+++.|+++|+++ +..+++.++.
T Consensus       226 ~--~~~i~--~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~-~g~v~~Lv~lL~~~-~~~v~~~a~~  298 (780)
T 2z6g_A          226 G--LLAIF--KSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT-NVKFLAITTD  298 (780)
T ss_dssp             H--HHHHH--HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCC-CHHHHHHHHH
T ss_pred             h--HHHHH--HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHH-cCCHHHHHHHHhcC-CHHHHHHHHH
Confidence            4  56666  789999999999999 9999999999999999875 55666655 89999999999986 8899999999


Q ss_pred             HHHHhcc-CcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHh
Q 036338          257 CLITISS-SKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQ  335 (408)
Q Consensus       257 aL~~Ls~-~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  335 (408)
                      +|.+|+. +.+++..+++.|+++.|+.+|++.                    ......+.++.+|.+|+.+++++..++.
T Consensus       299 aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~--------------------~~~~~~~~a~~aL~~Ls~~~~~~~~i~~  358 (780)
T 2z6g_A          299 CLQILAYGNQESKLIILASGGPQALVNIMRTY--------------------TYEKLLWTTSRVLKVLSVCSSNKPAIVE  358 (780)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTC--------------------CCHHHHHHHHHHHHHHHTSTTHHHHHHH
T ss_pred             HHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC--------------------CHHHHHHHHHHHHHHhhcChHHHHHHHH
Confidence            9999997 467999999999999999999863                    2456778899999999999999988887


Q ss_pred             hcCchHHHHHHHH--------------------------------------H----------------------HHHHHH
Q 036338          336 DAALLNGVVQKML--------------------------------------K----------------------TAQEAV  355 (408)
Q Consensus       336 ~~g~i~~lv~~l~--------------------------------------~----------------------~~~~~~  355 (408)
                      . |+++.|+.+|.                                      +                      +.++.+
T Consensus       359 ~-g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i  437 (780)
T 2z6g_A          359 A-GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV  437 (780)
T ss_dssp             T-THHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             h-chHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            4 77776654321                                      0                      345556


Q ss_pred             HhcCcHHHHHHHHhhcC-CHHHHHHHHHHHHHHhh
Q 036338          356 SSSNVLTKILLLMQSNC-TPAVRQMSADLLKIFRV  389 (408)
Q Consensus       356 ~~~g~~~~Ll~ll~~~~-~~~~k~~A~~lL~~l~~  389 (408)
                      ++.|+++.|+.+|.... .+.+++.|..+|..|..
T Consensus       438 ~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~  472 (780)
T 2z6g_A          438 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  472 (780)
T ss_dssp             HTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             HHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            67899999999997643 34789999888887764

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=2.3e-20  Score=146.69  Aligned_cols=73  Identities=27%  Similarity=0.520  Sum_probs=64.9

Q ss_pred             CCCCcccccCccccCCCceecC-CCCcccHhhHHHHHhcC-----CCCCCC--cccc-cCCCCCcccHHHHHHHHHHHHh
Q 036338            9 TVPSFFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSG-----NNTCPA--TMQV-LQSKEFVPNRTLQRLIQIWSDS   79 (408)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~-----~~~CP~--~~~~-l~~~~l~~n~~l~~~I~~~~~~   79 (408)
                      ..+++|+||||+++|+|||+++ |||+|||.||++||..+     ..+||+  |+.. +...+++||..|++.|+.|+++
T Consensus         3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~   82 (94)
T 2yu4_A            3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK   82 (94)
T ss_dssp             SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred             CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence            4578999999999999999996 99999999999999763     468999  5544 8888999999999999999988


Q ss_pred             cC
Q 036338           80 VQ   81 (408)
Q Consensus        80 ~~   81 (408)
                      +.
T Consensus        83 ~~   84 (94)
T 2yu4_A           83 RH   84 (94)
T ss_dssp             CC
T ss_pred             hc
Confidence            76

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.79  E-value=8.3e-20  Score=172.38  Aligned_cols=77  Identities=23%  Similarity=0.443  Sum_probs=71.2

Q ss_pred             CcCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338            5 DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      ....++|++|+||||+++|+|||+++|||||||.||++||..+..+||.|+++++..+++||..+++.|++|+..++
T Consensus       200 ~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~  276 (281)
T 2c2l_A          200 RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG  276 (281)
T ss_dssp             TSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred             ccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCC
Confidence            34567899999999999999999999999999999999998766669999999998899999999999999998876

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.76  E-value=2.9e-17  Score=156.06  Aligned_cols=207  Identities=11%  Similarity=0.080  Sum_probs=158.3

Q ss_pred             HHHHHHHHH-HHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIR-VAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~-~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      .+.++.|+. .|.+++++ |..|++.|.+++.+++.++..+++. |++|+|+.+|+++.+..+++.|+++|.||+.  +.
T Consensus        80 ~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~-g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~--~~  156 (296)
T 1xqr_A           80 LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL-GALRKLLRLLDRDACDTVRVKALFAISCLVR--EQ  156 (296)
T ss_dssp             TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHCSCHHHHHHHHHHHHHHHT--TC
T ss_pred             cCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC-CCHHHHHHHHccCCCHHHHHHHHHHHHHHHc--CC
Confidence            356789999 99998888 9999999999999999999999999 9999999999975434456999999999987  44


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD-ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASL  255 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~  255 (408)
                      .+. .+.+.  +.|+++.|+.+|+++ +..+|..|+++|.+|+.. ++.+..+.+ .|++++|+.+|+++ ++.+++.|+
T Consensus       157 ~~~-~~~~~--~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~g~i~~Lv~LL~~~-d~~v~~~al  230 (296)
T 1xqr_A          157 EAG-LLQFL--RLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGMVQQLVALVRTE-HSPFHEHVL  230 (296)
T ss_dssp             HHH-HHHHH--HTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTHHHHHHHHHTSC-CSTHHHHHH
T ss_pred             cHH-HHHHH--HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHH-cCCHHHHHHHHcCC-ChhHHHHHH
Confidence            443 44555  789999999999999 999999999999999875 567788877 89999999999997 889999999


Q ss_pred             HHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCH
Q 036338          256 SCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTK  327 (408)
Q Consensus       256 ~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~  327 (408)
                      ++|.+|.............+. +.|..+|.+..            ...+.......+.++|..++.++-..+
T Consensus       231 ~aL~~l~~~~~~~~~~~~~~~-~~l~~lL~~~~------------~~lq~~e~~~e~~~~~~~il~~~f~~~  289 (296)
T 1xqr_A          231 GALCSLVTDFPQGVRECREPE-LGLEELLRHRC------------QLLQQHEEYQEELEFCEKLLQTCFSSP  289 (296)
T ss_dssp             HHHHHHHTTCHHHHHHHHCGG-GCHHHHHHHHH------------HHHTTCGGGHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHhCChhHHHHHhccH-HHHHHHHHHHH------------HHccchHHHHHHHHHHHHHHHHHcCCC
Confidence            999999987443322222221 22333332200            000000124577788888888887543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.76  E-value=2.7e-17  Score=171.72  Aligned_cols=261  Identities=13%  Similarity=0.111  Sum_probs=196.8

Q ss_pred             HHHHHHHHHHHhc-CChh-HHHHHHHHHHHhhhCh--------------------------------------hhhhhhh
Q 036338           99 QDEVKDIIRVAIS-KNED-FSENLTKIVAFAKESD--------------------------------------ENKTFLA  138 (408)
Q Consensus        99 ~~~i~~Lv~~L~s-~~~~-~~~Al~~L~~la~~~~--------------------------------------~~r~~i~  138 (408)
                      +..+..|++.++. .+.. .-.++..|.+++...+                                      .++..+.
T Consensus       375 ~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~  454 (778)
T 3opb_A          375 ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL  454 (778)
T ss_dssp             HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH
Confidence            5567888888885 4444 5566666666654211                                      1577889


Q ss_pred             hcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChH---HHHHHHHHH
Q 036338          139 KFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVD---SRIESLRLL  215 (408)
Q Consensus       139 ~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~---~~~~Aa~~L  215 (408)
                      +. |+||.|+.++++.+ ...++.|+++|.+|+.  ...+  |..++  +.|++++|+.+|.++ +..   .|..|+.+|
T Consensus       455 ea-GvIp~Lv~Ll~S~s-~~~re~A~~aL~nLS~--d~~~--R~~lv--qqGal~~LL~lL~s~-~~~~~~~k~~AA~AL  525 (778)
T 3opb_A          455 RT-ELISFLKREMHNLS-PNCKQQVVRIIYNITR--SKNF--IPQLA--QQGAVKIILEYLANK-QDIGEPIRILGCRAL  525 (778)
T ss_dssp             TT-THHHHHHHHGGGSC-HHHHHHHHHHHHHHHT--SGGG--HHHHH--HTTHHHHHHHHTTCC----CCHHHHHHHHHH
T ss_pred             HC-cCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC--CHHH--HHHHH--HCCCHHHHHHHHhcC-CCcchHHHHHHHHHH
Confidence            99 99999999999877 3344999999999986  4443  77777  899999999999988 544   799999999


Q ss_pred             HHhhcCcchhhHHh--hhcChHHHHHHhcccCCCH-------------HHHHHHHHHHHHhccCcc-----hHHHHHhc-
Q 036338          216 EFIAGDADSKVKIA--ERDGLLAETVKSLSLDSDR-------------RLIEASLSCLITISSSKR-----AKTKLINH-  274 (408)
Q Consensus       216 ~~La~~~~~~~~i~--~~~g~i~~Lv~lL~~~~~~-------------~~~~~A~~aL~~Ls~~~~-----n~~~~~~~-  274 (408)
                      .+|+...+....+.  ...|+|++|+.+|..+.+.             ..+..|+.||.||++.++     .|..++++ 
T Consensus       526 ArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~  605 (778)
T 3opb_A          526 TRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTK  605 (778)
T ss_dssp             HHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSH
T ss_pred             HHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhc
Confidence            99997766555553  2248999999999831111             237789999999999873     48889985 


Q ss_pred             CcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHH-HHHHhhc-----CchHHHHHHHH
Q 036338          275 KLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGR-MEICQDA-----ALLNGVVQKML  348 (408)
Q Consensus       275 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~-----g~i~~lv~~l~  348 (408)
                      |+++.|..+|.+.                     +..++..|+.++.||+.+++++ +.+....     +.++.||.++.
T Consensus       606 ga~~~L~~LL~s~---------------------n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~  664 (778)
T 3opb_A          606 VYWSTIENLMLDE---------------------NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQ  664 (778)
T ss_dssp             HHHHHHHHGGGCS---------------------SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHhCC---------------------CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHc
Confidence            9999999999864                     7799999999999999999886 3554321     23777887442


Q ss_pred             H---------------------HHHHHHHhc-CcHHHHHHHHhhc-CCHHHHHHHHHHHHHHhh
Q 036338          349 K---------------------TAQEAVSSS-NVLTKILLLMQSN-CTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       349 ~---------------------~~~~~~~~~-g~~~~Ll~ll~~~-~~~~~k~~A~~lL~~l~~  389 (408)
                      .                     .+.+.+++. +++..++.+++.. ..+..+..+..++..+..
T Consensus       665 s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          665 LSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            1                     234555665 8999999999873 467789988888888886

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.75  E-value=5.7e-17  Score=169.30  Aligned_cols=275  Identities=11%  Similarity=0.092  Sum_probs=199.8

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc-
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED-  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~-  176 (408)
                      .+-+..+++.|...+.+ +..|++.|..++.+ +..|+.+++..|+++.|+.++++..+..+...++.+|.||+....+ 
T Consensus       333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~  411 (778)
T 3opb_A          333 KQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEX  411 (778)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCccc
Confidence            34556677777776666 88999999999875 7889998877688999999998633334568999999999863110 


Q ss_pred             -------------------------h---------HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc
Q 036338          177 -------------------------Q---------QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA  222 (408)
Q Consensus       177 -------------------------~---------~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~  222 (408)
                                               +         +..+..+.  ++|+|+.|+.++.++ +..+|+.|+++|.+|+.+.
T Consensus       412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~--eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~  488 (778)
T 3opb_A          412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL--RTELISFLKREMHNL-SPNCKQQVVRIIYNITRSK  488 (778)
T ss_dssp             CCCCC------------------CCTHHHHHHHHHHHHHHHTT--TTTHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTSG
T ss_pred             chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH--HCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCH
Confidence                                     0         00134565  899999999999999 9999999999999999999


Q ss_pred             chhhHHhhhcChHHHHHHhcccCCCH--HHHHHHHHHHHHhccCcchHHHHH--h-cCcHHHHHHHhccCCCCCCCCCCC
Q 036338          223 DSKVKIAERDGLLAETVKSLSLDSDR--RLIEASLSCLITISSSKRAKTKLI--N-HKLITELGKLITDGHNGNGSGNGN  297 (408)
Q Consensus       223 ~~~~~i~~~~g~i~~Lv~lL~~~~~~--~~~~~A~~aL~~Ls~~~~n~~~~~--~-~G~i~~Lv~lL~~~~~~~~~~~~~  297 (408)
                      ++|..+.. .|++++|+.+|.++.+.  .+++.|+.||.+|.........+-  . .|+|++|+.||...+   ++.   
T Consensus       489 ~~R~~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~---~~~---  561 (778)
T 3opb_A          489 NFIPQLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRST---PVD---  561 (778)
T ss_dssp             GGHHHHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSS---SCS---
T ss_pred             HHHHHHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCC---Ccc---
Confidence            99999998 89999999999987222  289999999999987655444332  1 499999999997310   000   


Q ss_pred             CCCCCCCCCCCC--c-chHHHHHHHHHHHhCCH-----HHHHHHHhhcCchHHHHHHHHH---HHHHHH-----------
Q 036338          298 GNGNGNGSGNGT--V-LITEKALRLVEILSTTK-----QGRMEICQDAALLNGVVQKMLK---TAQEAV-----------  355 (408)
Q Consensus       298 ~~~~~~~~~~~~--~-~~~~~a~~~L~~L~~~~-----~~~~~~~~~~g~i~~lv~~l~~---~~~~~~-----------  355 (408)
                         + .-....+  + ..+..|+.+|.||+..+     +.|..++.+.|++|.|+++|..   .+++++           
T Consensus       562 ---~-~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~  637 (778)
T 3opb_A          562 ---D-NPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP  637 (778)
T ss_dssp             ---S-CC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG
T ss_pred             ---c-ccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Confidence               0 0000011  1 23779999999999865     4578888744899999997654   122211           


Q ss_pred             -------Hhc------CcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          356 -------SSS------NVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       356 -------~~~------g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                             .+.      +.+..|+.++++ .+..+|+.|..+|..+..
T Consensus       638 e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts  683 (778)
T 3opb_A          638 LTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIAT  683 (778)
T ss_dssp             GGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcC
Confidence                   111      126677777765 567789999999998854

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.74  E-value=3.6e-18  Score=133.71  Aligned_cols=77  Identities=21%  Similarity=0.339  Sum_probs=68.6

Q ss_pred             CcCCCCCCcccccCccccCCCceecC-CCCcccHhhHHHHHhc-CCCCCCCccccc-CCCCCcccHHHHHHHHHHHHhcC
Q 036338            5 DLYITVPSFFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDS-GNNTCPATMQVL-QSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~-~~~~CP~~~~~l-~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      .....+++++.||||.++|.|||+++ |||+||+.||.+||.. +...||.|++++ ...++.+|..++++|+.|...++
T Consensus         5 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~   84 (92)
T 3ztg_A            5 SEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG   84 (92)
T ss_dssp             SSCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred             cccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence            34557889999999999999999999 9999999999999975 347899999997 56789999999999999998765

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.66  E-value=5.2e-17  Score=134.35  Aligned_cols=70  Identities=17%  Similarity=0.253  Sum_probs=63.7

Q ss_pred             CCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC-CCCcccHHHHHHHHHHHHh
Q 036338           10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS-KEFVPNRTLQRLIQIWSDS   79 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~-~~l~~n~~l~~~I~~~~~~   79 (408)
                      +++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|++++.. .++.+|..++.+++.|...
T Consensus        49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~  119 (124)
T 3fl2_A           49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG  119 (124)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred             CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence            456799999999999999999999999999999998666789999999987 7899999999999998754

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.64  E-value=8e-17  Score=146.39  Aligned_cols=71  Identities=23%  Similarity=0.381  Sum_probs=64.2

Q ss_pred             CCCCcccccCccccCCCceec-CCCCcccHhhHHHHHhcC-CCCCCC--cccccCCCCCcccHHHHHHHHHHHHh
Q 036338            9 TVPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSG-NNTCPA--TMQVLQSKEFVPNRTLQRLIQIWSDS   79 (408)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~-~~~CP~--~~~~l~~~~l~~n~~l~~~I~~~~~~   79 (408)
                      ....+|+||||+++|+|||++ .|||+|||.||.+||..+ ...||+  |++.+...+|+||..|+++|+.|..+
T Consensus       177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r  251 (267)
T 3htk_C          177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK  251 (267)
T ss_dssp             SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred             CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence            356789999999999999985 899999999999999863 467999  99999999999999999999999775

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.63  E-value=5.3e-17  Score=116.26  Aligned_cols=54  Identities=20%  Similarity=0.329  Sum_probs=49.2

Q ss_pred             cccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccH
Q 036338           13 FFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNR   67 (408)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~   67 (408)
                      .|.||||+++|+|||++ +|||+|||+||++|+..+ .+||.|++++...+++||+
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECc
Confidence            58999999999999999 899999999999999864 4699999999999999875

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.62  E-value=2.2e-16  Score=134.68  Aligned_cols=69  Identities=22%  Similarity=0.350  Sum_probs=63.4

Q ss_pred             CCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCC-CCcccHHHHHHHHHHHH
Q 036338           10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSK-EFVPNRTLQRLIQIWSD   78 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~-~l~~n~~l~~~I~~~~~   78 (408)
                      +++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++... .+.+|..++.+++.|..
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p  144 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP  144 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence            4577999999999999999999999999999999997667899999999887 89999999999998874

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.61  E-value=1.7e-16  Score=129.40  Aligned_cols=78  Identities=22%  Similarity=0.265  Sum_probs=67.1

Q ss_pred             CCCCCcCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC-------CCCcccHHHHHHH
Q 036338            1 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS-------KEFVPNRTLQRLI   73 (408)
Q Consensus         1 ~~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~-------~~l~~n~~l~~~I   73 (408)
                      |+.........+++.||||.++|.+||+++|||+||+.||.+|+..+...||.|++++..       .++..|..+...|
T Consensus         3 m~~~~~~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i   82 (115)
T 3l11_A            3 MALPKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTII   82 (115)
T ss_dssp             CCCCTTCCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHH
T ss_pred             CcccccccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHH
Confidence            555556666778899999999999999999999999999999998767889999998763       5677889999999


Q ss_pred             HHHHH
Q 036338           74 QIWSD   78 (408)
Q Consensus        74 ~~~~~   78 (408)
                      ++|..
T Consensus        83 ~~~~p   87 (115)
T 3l11_A           83 QKHYP   87 (115)
T ss_dssp             HHHSH
T ss_pred             HHHCC
Confidence            88863

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.59  E-value=5.6e-17  Score=123.05  Aligned_cols=67  Identities=24%  Similarity=0.348  Sum_probs=58.4

Q ss_pred             CcCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcC------CCCCCCcccccCCCCCcccHHHHH
Q 036338            5 DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSG------NNTCPATMQVLQSKEFVPNRTLQR   71 (408)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~------~~~CP~~~~~l~~~~l~~n~~l~~   71 (408)
                      .....+.+++.||||.+.|.+||+++|||+||+.||.+|+...      ...||.|++++...++.+|..+++
T Consensus         4 ~~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~   76 (79)
T 2egp_A            4 GSSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN   76 (79)
T ss_dssp             SSSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred             chHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence            3455788899999999999999999999999999999999863      568999999998888888876654

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.1e-15  Score=121.25  Aligned_cols=71  Identities=17%  Similarity=0.393  Sum_probs=64.1

Q ss_pred             CCCcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338           10 VPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      +++++.||||.+.|.+||++ +|||+||+.||.+|+.. ...||.|+.++...++.+|..++++++.|.....
T Consensus        19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~   90 (99)
T 2y43_A           19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN   90 (99)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence            34678999999999999998 89999999999999984 5689999999988889999999999999987654

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.58  E-value=1e-15  Score=121.54  Aligned_cols=71  Identities=23%  Similarity=0.360  Sum_probs=63.2

Q ss_pred             CCCcccccCccccCCCcee-cCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhc
Q 036338           10 VPSFFRCPISLDVMKSPVS-LCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSV   80 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~-~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~   80 (408)
                      +.+++.||||+++|.+||+ ++|||+||+.||.+|+......||.|+.++...++.+|..+..+++......
T Consensus        19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~   90 (100)
T 3lrq_A           19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ   90 (100)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred             CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence            4577999999999999999 8999999999999999976578999999998889999998888877776554

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.57  E-value=4.5e-16  Score=119.58  Aligned_cols=67  Identities=24%  Similarity=0.409  Sum_probs=58.1

Q ss_pred             cCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcC-----CCCCCCcccccCCCCCcccHHHHHH
Q 036338            6 LYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSG-----NNTCPATMQVLQSKEFVPNRTLQRL   72 (408)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~-----~~~CP~~~~~l~~~~l~~n~~l~~~   72 (408)
                      ....+.+++.||||.+.|.+|++++|||+||+.||.+|+...     ...||.|++++...++.+|..++++
T Consensus        12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~   83 (85)
T 2ecw_A           12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI   83 (85)
T ss_dssp             CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred             HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence            344678899999999999999999999999999999999862     5689999999988889888766543

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=6.3e-16  Score=118.73  Aligned_cols=66  Identities=26%  Similarity=0.543  Sum_probs=57.6

Q ss_pred             cCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhc-----CCCCCCCcccccCCCCCcccHHHHH
Q 036338            6 LYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS-----GNNTCPATMQVLQSKEFVPNRTLQR   71 (408)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~-----~~~~CP~~~~~l~~~~l~~n~~l~~   71 (408)
                      ....+.+++.||||.+.|.+|++++|||+||+.||.+|+..     +...||.|++++...++.+|..+++
T Consensus        12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecv_A           12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN   82 (85)
T ss_dssp             CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred             HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence            34567888999999999999999999999999999999975     3568999999998888888876654

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=4.3e-15  Score=110.73  Aligned_cols=62  Identities=19%  Similarity=0.401  Sum_probs=52.3

Q ss_pred             CCCCcCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhc--CCCCCCCcccccCCCCC
Q 036338            2 VRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS--GNNTCPATMQVLQSKEF   63 (408)
Q Consensus         2 ~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~--~~~~CP~~~~~l~~~~l   63 (408)
                      +.......+.+++.||||.+.|.+||+++|||+||+.||.+|+..  +...||.|++++...++
T Consensus         9 ~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A            9 ASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             ccHHHHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            334445567889999999999999999999999999999999974  45689999998876554

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.55  E-value=5.6e-15  Score=110.50  Aligned_cols=61  Identities=25%  Similarity=0.301  Sum_probs=51.2

Q ss_pred             cCCCCCCcccccCccccCCCceecC-CCCcccHhhHHHHHhcC-CCCCCCcccccCC-CCCccc
Q 036338            6 LYITVPSFFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSG-NNTCPATMQVLQS-KEFVPN   66 (408)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~-~~~CP~~~~~l~~-~~l~~n   66 (408)
                      ....+++++.||||.++|.+||+++ |||+||+.||.+|+... ...||.|++++.. +.+.+|
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n   71 (74)
T 2yur_A            8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP   71 (74)
T ss_dssp             CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred             ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence            4456889999999999999999999 99999999999999863 4689999997544 345555

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.55  E-value=5.9e-13  Score=135.93  Aligned_cols=262  Identities=13%  Similarity=0.170  Sum_probs=205.0

Q ss_pred             HHHHHHHHHHHhcCC-hh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccccc
Q 036338           99 QDEVKDIIRVAISKN-ED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIE  175 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~-~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~  175 (408)
                      .+.|+.|..+++++. .+ |..|+..|+.++++   ++..+..  ++++.|+..|+... |......++.+|.++.....
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~   94 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE   94 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence            678999999998875 34 99999999999764   5556654  78999999998876 67777889999988654211


Q ss_pred             chH---------------HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-c-hhhHHhhhcChHHHH
Q 036338          176 DQQ---------------HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-D-SKVKIAERDGLLAET  238 (408)
Q Consensus       176 ~~~---------------~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~-~~~~i~~~~g~i~~L  238 (408)
                      +++               ....++.  +.+.|+.|+.+|++. +..+|.++..+|..|+.+. + ..+.|....++|+.|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~d~f~~--~~~~i~~Ll~lL~~~-df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~L  171 (651)
T 3grl_A           95 EEEVEENSTRQSEDLGSQFTEIFIK--QQENVTLLLSLLEEF-DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRL  171 (651)
T ss_dssp             -------------CHHHHHHHHHHH--STHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHH
T ss_pred             cccccccccccchHHHHHHHHHHHc--CCccHHHHHHHhcCc-cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHH
Confidence            111               0112344  789999999999998 9999999999999998764 3 678888657999999


Q ss_pred             HHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Q 036338          239 VKSLSLDSDRRLIEASLSCLITISSSKRAKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKAL  317 (408)
Q Consensus       239 v~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  317 (408)
                      |.+|++. ...+|..|+..|.+|+.+..+.++++. +|+++.|+.++.+.    |.             .....+++.++
T Consensus       172 v~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~E----g~-------------~~Ggivv~DCL  233 (651)
T 3grl_A          172 MDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEE----GN-------------SDGGIVVEDCL  233 (651)
T ss_dssp             HGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH----TG-------------GGSHHHHHHHH
T ss_pred             HHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhc----CC-------------CccchhHHHHH
Confidence            9999986 778999999999999999998888886 59999999999874    00             12348899999


Q ss_pred             HHHHHHhC-CHHHHHHHHhhcCchHHHHHHHH--------------H----------------------HHHHHHHhcCc
Q 036338          318 RLVEILST-TKQGRMEICQDAALLNGVVQKML--------------K----------------------TAQEAVSSSNV  360 (408)
Q Consensus       318 ~~L~~L~~-~~~~~~~~~~~~g~i~~lv~~l~--------------~----------------------~~~~~~~~~g~  360 (408)
                      .+|.+|.+ ++.|+..|.+. ++++.|..+|.              +                      ..+..+.+.|+
T Consensus       234 ~ll~nLLr~N~sNQ~~FrEt-~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~  312 (651)
T 3grl_A          234 ILLQNLLKNNNSNQNFFKEG-SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGL  312 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHhcCHHHHHHHHHc-CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCC
Confidence            99999997 57798888875 88888776431              1                      45677889999


Q ss_pred             HHHHHHHHhhcC-CHHHHHHHHHHHHHH
Q 036338          361 LTKILLLMQSNC-TPAVRQMSADLLKIF  387 (408)
Q Consensus       361 ~~~Ll~ll~~~~-~~~~k~~A~~lL~~l  387 (408)
                      +..|+.++.+.+ ...+|..|...+.-+
T Consensus       313 l~~Ll~ll~~~~~p~~i~~~Al~tla~~  340 (651)
T 3grl_A          313 LQQLCTILMATGVPADILTETINTVSEV  340 (651)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence            999999987654 455676665555433

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=4.7e-15  Score=108.31  Aligned_cols=57  Identities=19%  Similarity=0.292  Sum_probs=50.4

Q ss_pred             CCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCC
Q 036338            7 YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF   63 (408)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l   63 (408)
                      ...+++++.||||.+.|++||+++|||+||+.||.+|+..+...||.|++++...++
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A            9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            345778899999999999999999999999999999997667789999998876554

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.55  E-value=1.4e-15  Score=124.36  Aligned_cols=69  Identities=19%  Similarity=0.393  Sum_probs=62.9

Q ss_pred             CCCcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338           10 VPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      +.+++.||||.++|.+||++ +|||+||+.||.+|+.   ..||.|+.++...++.+|..++.+++.+.....
T Consensus        19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~   88 (117)
T 1jm7_B           19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRN   88 (117)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred             chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHHH
Confidence            46789999999999999999 9999999999999997   579999999988899999999999998876543

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.55  E-value=2.6e-15  Score=121.00  Aligned_cols=69  Identities=13%  Similarity=0.283  Sum_probs=61.1

Q ss_pred             CCCCcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCC----CCcccHHHHHHHHHHHH
Q 036338            9 TVPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSK----EFVPNRTLQRLIQIWSD   78 (408)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~----~l~~n~~l~~~I~~~~~   78 (408)
                      .+++++.||||.++|.+||++ +|||+||+.||.+|+.. ...||.|+..+...    .+.+|..+..+++.|..
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~   84 (108)
T 2ckl_A           11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP   84 (108)
T ss_dssp             HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred             ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence            467889999999999999998 99999999999999985 46799999998765    67889999999888764

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=3.2e-15  Score=113.87  Aligned_cols=65  Identities=17%  Similarity=0.138  Sum_probs=54.6

Q ss_pred             cCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHH
Q 036338            6 LYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRL   72 (408)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~   72 (408)
                      ...+..+.+.||||.+.|.+||+++|||+||+.||.+|+.. ...||.|++++. ..+.+|..+...
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~   72 (81)
T 2csy_A            8 GSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAK   72 (81)
T ss_dssp             CSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHH
T ss_pred             CcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHH
Confidence            33456778999999999999999999999999999999975 567999999986 667788655443

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.53  E-value=3.1e-15  Score=122.49  Aligned_cols=70  Identities=21%  Similarity=0.420  Sum_probs=63.2

Q ss_pred             CCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHH
Q 036338            8 ITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWS   77 (408)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~   77 (408)
                      ..+++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++...++.+|..+++.|.++.
T Consensus        13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~   82 (118)
T 3hct_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM   82 (118)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred             cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence            4678889999999999999999999999999999999876668999999998888999999988887654

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.1e-14  Score=108.27  Aligned_cols=60  Identities=15%  Similarity=0.268  Sum_probs=52.7

Q ss_pred             cCCCCCCcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCccc
Q 036338            6 LYITVPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN   66 (408)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n   66 (408)
                      ...++.+++.||||++.|.+||++ +|||+||+.||.+|+.. ...||.|++++...++.+|
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A            8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred             hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence            445678899999999999999998 99999999999999975 5689999999988777665

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.1e-14  Score=105.20  Aligned_cols=51  Identities=24%  Similarity=0.470  Sum_probs=44.3

Q ss_pred             CCcCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhc--CCCCCCCc
Q 036338            4 DDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS--GNNTCPAT   54 (408)
Q Consensus         4 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~--~~~~CP~~   54 (408)
                      ......+.+++.||||.+.|.+||+++|||+||+.||.+|+..  +...||.|
T Consensus        11 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           11 GQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HHHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            3344567889999999999999999999999999999999985  45679987

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.51  E-value=4.3e-15  Score=129.01  Aligned_cols=71  Identities=28%  Similarity=0.423  Sum_probs=61.9

Q ss_pred             CCCCcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCC-CCCcccHHHHHHHHHHHHh
Q 036338            9 TVPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQS-KEFVPNRTLQRLIQIWSDS   79 (408)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~-~~l~~n~~l~~~I~~~~~~   79 (408)
                      .+.+++.||||.+.|.+||++ +|||+||+.||.+|+..+...||.|+.++.. ..+.+|..++++|..|...
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~  122 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS  122 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence            345678999999999999998 9999999999999999777889999999854 5689999999999988654

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=99.50  E-value=1.1e-14  Score=153.84  Aligned_cols=74  Identities=30%  Similarity=0.436  Sum_probs=69.3

Q ss_pred             CCCCCCcccccCccccCCCceecCCC-CcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338            7 YITVPSFFRCPISLDVMKSPVSLCTG-VTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv~~~cg-h~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      ..++|++|.|||++++|+|||++++| +||+|++|++|+.. +.+||.|+++++..+++||++||+.|++|+.++.
T Consensus       885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~  959 (968)
T 3m62_A          885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKK  959 (968)
T ss_dssp             HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence            46899999999999999999999998 69999999999986 5689999999999999999999999999998875

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.50  E-value=8.1e-15  Score=118.77  Aligned_cols=69  Identities=17%  Similarity=0.420  Sum_probs=59.1

Q ss_pred             CCCcccccCccccCCCceecCCCCcccHhhHHHHHhcC--CCCCCCcccccCCCCCcccHHHHHHHHHHHH
Q 036338           10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSG--NNTCPATMQVLQSKEFVPNRTLQRLIQIWSD   78 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~--~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~   78 (408)
                      +.+.+.||||.+.|.+||+++|||+||+.||.+|+...  ...||.|+.++...++.+|..+...++.+..
T Consensus        18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999853  3589999999998889888777666666654

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.47  E-value=1.8e-14  Score=121.32  Aligned_cols=64  Identities=19%  Similarity=0.331  Sum_probs=51.7

Q ss_pred             CCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHH
Q 036338           11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWS   77 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~   77 (408)
                      .+++.||||.+.|.|||+++|||+||+.||.+|+.. ...||.|++++...  .+|..+...|..+.
T Consensus        51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~  114 (138)
T 4ayc_A           51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV  114 (138)
T ss_dssp             HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred             cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence            456899999999999999999999999999999985 56799999987543  24555555555554

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.47  E-value=1e-14  Score=118.96  Aligned_cols=68  Identities=16%  Similarity=0.293  Sum_probs=56.5

Q ss_pred             CCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCc-ccHHHHHHHHHH
Q 036338            9 TVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFV-PNRTLQRLIQIW   76 (408)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~-~n~~l~~~I~~~   76 (408)
                      ++++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++...++. ++..+.+.+.++
T Consensus        19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l   87 (116)
T 1rmd_A           19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL   87 (116)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred             hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence            35567899999999999999999999999999999987667899999998877764 455666655443

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.46  E-value=2.7e-14  Score=103.93  Aligned_cols=55  Identities=18%  Similarity=0.304  Sum_probs=49.1

Q ss_pred             CcccccCccc-cCCCc----eecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCccc
Q 036338           12 SFFRCPISLD-VMKSP----VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN   66 (408)
Q Consensus        12 ~~~~Cpi~~~-~~~dP----v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n   66 (408)
                      +++.||||.+ +|.+|    ++++|||+||+.||.+|+..+...||.|+.++...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   61 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ   61 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence            5688999999 99999    5789999999999999998777789999999988887765

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.46  E-value=1.1e-14  Score=122.62  Aligned_cols=67  Identities=18%  Similarity=0.335  Sum_probs=56.3

Q ss_pred             CCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC---------CCCcccHHHHHHHHH
Q 036338            9 TVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS---------KEFVPNRTLQRLIQI   75 (408)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~---------~~l~~n~~l~~~I~~   75 (408)
                      .++++|.||||+++|++||+++|||+||+.||.+|+..+...||.|+.++..         ..+.++..+++.|.+
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~  102 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES  102 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence            4678899999999999999999999999999999998777789999986432         245588777777653

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.43  E-value=5.1e-14  Score=122.83  Aligned_cols=69  Identities=22%  Similarity=0.433  Sum_probs=62.1

Q ss_pred             CCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHH
Q 036338            8 ITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIW   76 (408)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~   76 (408)
                      ..++++|.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++...++.+|..+++.|.++
T Consensus        13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l   81 (170)
T 3hcs_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (170)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence            357889999999999999999999999999999999987666899999999888899999888877654

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2.6e-13  Score=96.15  Aligned_cols=49  Identities=24%  Similarity=0.550  Sum_probs=43.3

Q ss_pred             cCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhc--CCCCCCCc
Q 036338            6 LYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS--GNNTCPAT   54 (408)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~--~~~~CP~~   54 (408)
                      ....+.+++.||||.+.|++||+++|||+||+.||.+|+..  ....||.|
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            8 ALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             HhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            44467788999999999999999999999999999999875  45789987

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=3.7e-13  Score=103.92  Aligned_cols=56  Identities=21%  Similarity=0.415  Sum_probs=49.0

Q ss_pred             cCCCCCCcccccCccccCCC----ceecCCCCcccHhhHHHHHhcC--CCCCCCcccccCCC
Q 036338            6 LYITVPSFFRCPISLDVMKS----PVSLCTGVTYDRASIQRWLDSG--NNTCPATMQVLQSK   61 (408)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~d----Pv~~~cgh~f~r~cI~~~~~~~--~~~CP~~~~~l~~~   61 (408)
                      ....+.+.+.||||.+.|.+    |++++|||+||+.||.+|+...  ...||.|++++...
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A            8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            44567888999999999999    9999999999999999999864  46899999987654

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.38  E-value=1.2e-13  Score=102.22  Aligned_cols=58  Identities=24%  Similarity=0.439  Sum_probs=50.7

Q ss_pred             CCCCCcccccCccccCCCc-------eecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCccc
Q 036338            8 ITVPSFFRCPISLDVMKSP-------VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN   66 (408)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dP-------v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n   66 (408)
                      ....+++.||||.+.|.+|       ++++|||+||+.||.+|+... ..||.|++++...++.++
T Consensus         5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~   69 (71)
T 3ng2_A            5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI   69 (71)
T ss_dssp             -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCC
T ss_pred             CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhheeec
Confidence            4556789999999999999       889999999999999999854 589999999988877765

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.36  E-value=5.6e-13  Score=100.22  Aligned_cols=57  Identities=16%  Similarity=0.192  Sum_probs=48.0

Q ss_pred             CCCCCCcccccCccccC--CCceecC--CCCcccHhhHHHHHhcCCCCCCCcccccCCCCC
Q 036338            7 YITVPSFFRCPISLDVM--KSPVSLC--TGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF   63 (408)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~--~dPv~~~--cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l   63 (408)
                      ...+.+++.||||.+.|  .||++.+  |||+||+.||.+||..+...||.||+++....+
T Consensus         5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            34567889999999999  4677766  999999999999998777889999999876544

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=3.6e-13  Score=99.70  Aligned_cols=51  Identities=18%  Similarity=0.172  Sum_probs=45.2

Q ss_pred             CCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338            9 TVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      ...+++.||||++.|.+||+++|||+||+.||.+|+.. ...||.|++++..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE   61 (71)
T ss_dssp             SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred             cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence            44577899999999999999999999999999999985 4679999988754

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=7.7e-13  Score=97.13  Aligned_cols=54  Identities=22%  Similarity=0.363  Sum_probs=47.2

Q ss_pred             cCCCCCCcccccCccccCCCc-------eecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338            6 LYITVPSFFRCPISLDVMKSP-------VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dP-------v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      ....+++.+.||||++.|.+|       ++++|||+||+.||.+|+.. ...||.|++++..
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A            8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence            445677889999999999998       88999999999999999986 5689999988753

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.30  E-value=2.4e-12  Score=97.07  Aligned_cols=60  Identities=20%  Similarity=0.366  Sum_probs=49.8

Q ss_pred             cCCCCCCcccccCccccCCCc---eecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCccc
Q 036338            6 LYITVPSFFRCPISLDVMKSP---VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN   66 (408)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dP---v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n   66 (408)
                      ......+++.||||++.|.+|   ++++|||.||+.||.+|+.. ..+||.|++++...++.+|
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A            8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             CCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred             CcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence            344566789999999999987   45699999999999999985 4689999999887776654

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.29  E-value=5.3e-13  Score=96.48  Aligned_cols=54  Identities=26%  Similarity=0.487  Sum_probs=47.7

Q ss_pred             CcccccCccccCCCc-------eecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCccc
Q 036338           12 SFFRCPISLDVMKSP-------VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN   66 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dP-------v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n   66 (408)
                      +++.||||.+.|.+|       ++++|||+||+.||.+|+.. +..||.|++++...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   62 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   62 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence            467899999999998       88899999999999999986 5689999999887776654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.27  E-value=2.2e-10  Score=117.01  Aligned_cols=224  Identities=9%  Similarity=0.107  Sum_probs=173.9

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChh-hhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDE-NKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~-~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      ++.|..|+..|.+.+-. |..+++.|..++..++. ++++|...+++|+.|+.+|++.. ..++.+|+..|.+|+.  ++
T Consensus       121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~Lt~--~n  197 (651)
T 3grl_A          121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQALTR--SN  197 (651)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHHHHT--TC
T ss_pred             CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHHHhc--CC
Confidence            67789999999988877 99999999999988777 99999988899999999999766 2244889999999997  44


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCC---ChHHHHHHHHHHHHhhcCcc-hhhHHhhhcChHHHHHHhcccCCC-----
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQE---SVDSRIESLRLLEFIAGDAD-SKVKIAERDGLLAETVKSLSLDSD-----  247 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~---~~~~~~~Aa~~L~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~-----  247 (408)
                      .+ +++++.  -.|+++.|+.+++..+   ...+...++.+|.+|...+. |+..+.+ .|+++.|..+|+.+.+     
T Consensus       198 ~~-iQklVA--FEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE-t~~i~~L~~LL~~~~~~~~W~  273 (651)
T 3grl_A          198 GA-IQKIVA--FENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE-GSYIQRMKPWFEVGDENSGWS  273 (651)
T ss_dssp             HH-HHHHHH--HTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCGGGGGGGGCCCSCSSCCC
T ss_pred             HH-HHHHHH--HhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH-cCCHHHHHHHhCCCccccccH
Confidence            44 588887  7899999999998631   12567889999999998764 6666666 7999999999985422     


Q ss_pred             HHHHHH---HHHHHHHhccC-------cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Q 036338          248 RRLIEA---SLSCLITISSS-------KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKAL  317 (408)
Q Consensus       248 ~~~~~~---A~~aL~~Ls~~-------~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  317 (408)
                      .+...+   ++.+++-|...       ..|...+.+.|+++.|+.++.++                   .....++..|+
T Consensus       274 ~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~-------------------~~p~~i~~~Al  334 (651)
T 3grl_A          274 AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMAT-------------------GVPADILTETI  334 (651)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCS-------------------SCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccC-------------------CCCHHHHHHHH
Confidence            122333   56666666553       13788888999999999999864                   34568889999


Q ss_pred             HHHHHHhC-CHHHHHHHHhhc----CchHHHHHHHH
Q 036338          318 RLVEILST-TKQGRMEICQDA----ALLNGVVQKML  348 (408)
Q Consensus       318 ~~L~~L~~-~~~~~~~~~~~~----g~i~~lv~~l~  348 (408)
                      .++..+.+ ++.++..+....    ...|.++.+|+
T Consensus       335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~  370 (651)
T 3grl_A          335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLM  370 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHH
Confidence            99999975 789999987631    13455666443

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.20  E-value=4.8e-12  Score=88.95  Aligned_cols=46  Identities=20%  Similarity=0.194  Sum_probs=40.5

Q ss_pred             CCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      .+++.||||.+.|.+|++++|||+||+.||.+|    ...||.|++.+..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence            467899999999999999999999999999873    4579999988754

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=5.4e-12  Score=92.98  Aligned_cols=54  Identities=17%  Similarity=0.325  Sum_probs=47.1

Q ss_pred             CCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCC
Q 036338            7 YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE   62 (408)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~   62 (408)
                      ...+.+.+.||||.+.+.+ ++++|||+||+.||.+|+. ....||.|++++...+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A            9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred             hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence            3456788999999999999 9999999999999999998 4678999999886543

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.6e-11  Score=91.41  Aligned_cols=56  Identities=16%  Similarity=0.312  Sum_probs=47.0

Q ss_pred             CCcCCCCCCcccccCccccCCCceec---CCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338            4 DDLYITVPSFFRCPISLDVMKSPVSL---CTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus         4 ~~~~~~~~~~~~Cpi~~~~~~dPv~~---~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      .....++.++..||||++.|.+|..+   +|||.||+.||.+|+... .+||.|++++..
T Consensus         6 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~   64 (74)
T 2ep4_A            6 SGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQ   64 (74)
T ss_dssp             CSCCCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSS
T ss_pred             ccccccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCccccc
Confidence            34455677889999999999988655   999999999999999864 489999998754

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.16  E-value=1.9e-11  Score=85.43  Aligned_cols=47  Identities=23%  Similarity=0.381  Sum_probs=41.5

Q ss_pred             CcccccCccccCCC----ceecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338           12 SFFRCPISLDVMKS----PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        12 ~~~~Cpi~~~~~~d----Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      ++..||||.+.|.+    |++++|||.||+.||.+|+..+ ..||.|++++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence            45789999999977    8888999999999999999865 78999998764

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.15  E-value=2.2e-11  Score=89.04  Aligned_cols=48  Identities=29%  Similarity=0.466  Sum_probs=41.9

Q ss_pred             CcccccCccccCCCc-eecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           12 SFFRCPISLDVMKSP-VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dP-v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      .+..||||.+.+.+| ++++|||+||+.||.+|+.. +..||.|+.++..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence            456899999999997 67899999999999999985 4689999988754

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.13  E-value=1.4e-11  Score=102.39  Aligned_cols=54  Identities=26%  Similarity=0.479  Sum_probs=47.4

Q ss_pred             CCcccccCccccCCCc-------eecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc
Q 036338           11 PSFFRCPISLDVMKSP-------VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP   65 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dP-------v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~   65 (408)
                      ++++.||||++.|.+|       |+++|||+||+.||.+|+.. ...||.|++.+...++.+
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~   65 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP   65 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEE
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccccc
Confidence            5678999999999999       99999999999999999985 458999999987766544

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.11  E-value=7.6e-11  Score=86.45  Aligned_cols=53  Identities=17%  Similarity=0.360  Sum_probs=43.9

Q ss_pred             CCCCCCcccccCccccCC---CceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338            7 YITVPSFFRCPISLDVMK---SPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~---dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      ..+...+..||||.+.|.   +|++++|||.||+.||.+|+.. +.+||.|+.++..
T Consensus         8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   63 (69)
T 2kiz_A            8 GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA   63 (69)
T ss_dssp             CCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred             cCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence            345567789999999985   4678899999999999999986 4469999988754

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.11  E-value=4.7e-11  Score=83.42  Aligned_cols=48  Identities=21%  Similarity=0.457  Sum_probs=42.1

Q ss_pred             CCCcccccCccccCCC---ceecC-CCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338           10 VPSFFRCPISLDVMKS---PVSLC-TGVTYDRASIQRWLDSGNNTCPATMQVL   58 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~d---Pv~~~-cgh~f~r~cI~~~~~~~~~~CP~~~~~l   58 (408)
                      +.++..||||.+.|.+   +++++ |||.|++.||.+|+.. +.+||.|++++
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~   53 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence            3567789999999999   88887 9999999999999985 56899999865

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.10  E-value=5.2e-11  Score=92.48  Aligned_cols=50  Identities=20%  Similarity=0.418  Sum_probs=43.6

Q ss_pred             CCCcccccCccccCCC---ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           10 VPSFFRCPISLDVMKS---PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~d---Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      ..++..||||++.|.+   +++++|||.||+.||.+|+.. +.+||.|+.++.+
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence            4567889999999998   888999999999999999984 5689999988754

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=7.2e-11  Score=88.14  Aligned_cols=49  Identities=18%  Similarity=0.348  Sum_probs=42.8

Q ss_pred             CCcccccCccccCCCc---eecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           11 PSFFRCPISLDVMKSP---VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dP---v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      .++..||||++.|.+|   ++++|||.||+.||.+|+.. +.+||.|++++.+
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence            4567899999999998   77899999999999999986 4589999988754

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.05  E-value=1.2e-10  Score=94.26  Aligned_cols=50  Identities=10%  Similarity=0.182  Sum_probs=42.3

Q ss_pred             CCcccccCccccCCCce------------------ecCCCCcccHhhHHHHHhc----CCCCCCCcccccCC
Q 036338           11 PSFFRCPISLDVMKSPV------------------SLCTGVTYDRASIQRWLDS----GNNTCPATMQVLQS   60 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv------------------~~~cgh~f~r~cI~~~~~~----~~~~CP~~~~~l~~   60 (408)
                      +.+..||||++.|.+|+                  +++|||.||+.||.+|+..    ...+||.||..+..
T Consensus        23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            45568999999999886                  7899999999999999963    35689999988754

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.03  E-value=5.2e-11  Score=88.67  Aligned_cols=46  Identities=17%  Similarity=0.203  Sum_probs=41.0

Q ss_pred             CCCcccccCccccCCCceecCCCCc-ccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           10 VPSFFRCPISLDVMKSPVSLCTGVT-YDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      +.+++.|+||.+.+.+||+++|||+ ||+.|+.+|     ..||.||+++..
T Consensus        21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            3456899999999999999999999 999999998     569999988754

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.00  E-value=1.7e-08  Score=94.23  Aligned_cols=214  Identities=10%  Similarity=0.033  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHH-hhcCcchhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEI-LSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~l-L~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      +..++.|++.+.+.+.. +..|++.|..+......    +.   ..++.|... +.+. +..+...|+.+|..+..  .+
T Consensus        53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~----~~---~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~--~~  122 (280)
T 1oyz_A           53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC----ED---NVFNILNNMALNDK-SACVRATAIESTAQRCK--KN  122 (280)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT----HH---HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHH--HC
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc----ch---HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhc--cC
Confidence            44566666666666555 66666666555321110    00   122223221 2222 23344666666666542  11


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      ..      .  ....++.|+.+|.+. +..+|..|+.+|.++..           .++++.|+.+|+++ ++.++..|++
T Consensus       123 ~~------~--~~~~~~~L~~~l~d~-~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~  181 (280)
T 1oyz_A          123 PI------Y--SPKIVEQSQITAFDK-STNVRRATAFAISVIND-----------KATIPLLINLLKDP-NGDVRNWAAF  181 (280)
T ss_dssp             GG------G--HHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC--------------CCHHHHHHHHTCS-SHHHHHHHHH
T ss_pred             Cc------c--cHHHHHHHHHHhhCC-CHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCC-CHHHHHHHHH
Confidence            11      0  123466677777776 77777777777766542           24577777777775 7777777777


Q ss_pred             HHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhh
Q 036338          257 CLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQD  336 (408)
Q Consensus       257 aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  336 (408)
                      +|..+....        ..+++.|+.+|.++                     +..++..|+.+|..+..           
T Consensus       182 aL~~~~~~~--------~~~~~~L~~~l~d~---------------------~~~vR~~A~~aL~~~~~-----------  221 (280)
T 1oyz_A          182 AININKYDN--------SDIRDCFVEMLQDK---------------------NEEVRIEAIIGLSYRKD-----------  221 (280)
T ss_dssp             HHHHHTCCC--------HHHHHHHHHHTTCS---------------------CHHHHHHHHHHHHHTTC-----------
T ss_pred             HHHhhccCc--------HHHHHHHHHHhcCC---------------------CHHHHHHHHHHHHHhCC-----------
Confidence            777764321        23567777777643                     66777777777777642           


Q ss_pred             cCchHHHHHHHHH-----HHHHH---HHhcCcHHHHHHHHhhcCCHHHHHHHHHH
Q 036338          337 AALLNGVVQKMLK-----TAQEA---VSSSNVLTKILLLMQSNCTPAVRQMSADL  383 (408)
Q Consensus       337 ~g~i~~lv~~l~~-----~~~~~---~~~~g~~~~Ll~ll~~~~~~~~k~~A~~l  383 (408)
                      ...++.|++.|..     .+.+.   +-....++.|..+++....+.....+...
T Consensus       222 ~~~~~~L~~~l~d~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~~~~~~~~~~~  276 (280)
T 1oyz_A          222 KRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDK  276 (280)
T ss_dssp             GGGHHHHHHHHTSSSCCHHHHHHHHHHCCGGGHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred             HhhHHHHHHHhcCccHHHHHHHHHHhcCchhhhHHHHHHHhcCCCcHHHHHHHHH
Confidence            2456666664322     12222   22345677777777655445555555333

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.98  E-value=4.8e-08  Score=87.06  Aligned_cols=185  Identities=16%  Similarity=0.123  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      +..++.|++.|.+.+.. |..|+..|..+..           . ++++.|+.+|.+++ ..+...|+.+|..+.      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~-~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~------   78 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------E-RAVEPLIKALKDED-AWVRRAAADALGQIG------   78 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------G-GGHHHHHHHTTCSC-HHHHHHHHHHHHHHC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------c-cHHHHHHHHHcCCC-HHHHHHHHHHHHhhC------
Confidence            66788999999988877 8889988887643           2 77899999998765 334488888876653      


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                                ..+.++.|+.+|.+. +..+|..|+.+|..+..           .+.++.|+++|+++ ++.++..|+.+
T Consensus        79 ----------~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~a  135 (211)
T 3ltm_A           79 ----------DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE-DWFVRIAAAFA  135 (211)
T ss_dssp             ----------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence                      335678888899988 99999999999988742           35789999999887 89999999999


Q ss_pred             HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhc
Q 036338          258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDA  337 (408)
Q Consensus       258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~  337 (408)
                      |.++..          ..+++.|+.+|.++                     ++.++..|+.+|..+..           .
T Consensus       136 L~~~~~----------~~~~~~L~~~l~d~---------------------~~~vr~~a~~aL~~~~~-----------~  173 (211)
T 3ltm_A          136 LGEIGD----------ERAVEPLIKALKDE---------------------DGWVRQSAADALGEIGG-----------E  173 (211)
T ss_dssp             HHHHCC----------GGGHHHHHHHTTCS---------------------SHHHHHHHHHHHHHHCS-----------H
T ss_pred             HHHcCC----------HHHHHHHHHHHcCC---------------------CHHHHHHHHHHHHHhCc-----------h
Confidence            999853          35789999999754                     78899999999988732           1


Q ss_pred             CchHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          338 ALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       338 g~i~~lv~~l~~~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      .                     +++.|..+++. .++.+|..|...|..+..
T Consensus       174 ~---------------------~~~~L~~~l~d-~~~~vr~~A~~aL~~~~~  203 (211)
T 3ltm_A          174 R---------------------VRAAMEKLAET-GTGFARKVAVNYLETHKS  203 (211)
T ss_dssp             H---------------------HHHHHHHHHHH-CCHHHHHHHHHHHHC---
T ss_pred             h---------------------HHHHHHHHHhC-CCHHHHHHHHHHHHhcCC
Confidence            1                     22334444443 457788888777777666

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.98  E-value=8.3e-08  Score=84.81  Aligned_cols=152  Identities=16%  Similarity=0.115  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      +...+.+++.|.+.+.. |..|+..|..+..           . +.++.|+.+|.+++ ..+...|+.+|..+.      
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~-~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~------   73 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------E-RAVEPLIKALKDED-AWVRRAAADALGQIG------   73 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------G-GGHHHHHHHTTCSS-HHHHHHHHHHHHHHC------
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------h-hHHHHHHHHHcCCC-HHHHHHHHHHHHhhC------
Confidence            78889999999999988 9999999987643           2 67899999998665 334478888876653      


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                                ....++.|+.+|.+. +..+|..|+++|..+.          . ..+++.|+++|+++ ++.++..|+++
T Consensus        74 ----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~----------~-~~~~~~L~~~l~d~-~~~vr~~a~~a  130 (201)
T 3ltj_A           74 ----------DERAVEPLIKALKDE-DGWVRQSAAVALGQIG----------D-ERAVEPLIKALKDE-DWFVRIAAAFA  130 (201)
T ss_dssp             ----------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC----------C-GGGHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----------c-HHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence                      335678888999988 9999999999999864          2 35789999999987 99999999999


Q ss_pred             HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q 036338          258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEIL  323 (408)
Q Consensus       258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L  323 (408)
                      |..+..          ..+++.|+.+|.++                     +..++..|+.+|..+
T Consensus       131 L~~~~~----------~~~~~~L~~~l~d~---------------------~~~vr~~A~~aL~~~  165 (201)
T 3ltj_A          131 LGEIGD----------ERAVEPLIKALKDE---------------------DGWVRQSAADALGEI  165 (201)
T ss_dssp             HHHHTC----------GGGHHHHHHHTTCS---------------------SHHHHHHHHHHHHHH
T ss_pred             HHHhCC----------HHHHHHHHHHHcCC---------------------CHHHHHHHHHHHHHh
Confidence            998853          46889999999754                     788999999999988

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=3.9e-11  Score=89.66  Aligned_cols=46  Identities=17%  Similarity=0.203  Sum_probs=39.9

Q ss_pred             CCCcccccCccccCCCceecCCCCc-ccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           10 VPSFFRCPISLDVMKSPVSLCTGVT-YDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      +.+++.||||.+.+++||+++|||+ ||+.|+.++     ..||.||+++..
T Consensus        22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   68 (75)
T 2ecg_A           22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   68 (75)
T ss_dssp             HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred             CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence            3456889999999999999999999 999999643     569999998755

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.93  E-value=4.9e-10  Score=108.30  Aligned_cols=49  Identities=18%  Similarity=0.279  Sum_probs=44.0

Q ss_pred             cccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCC
Q 036338           13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSK   61 (408)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~   61 (408)
                      ...||||.+.+.+||+++|||.||..||.+|+......||.||.++...
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            3689999999999999999999999999999986667899999987653

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.90  E-value=2e-10  Score=89.70  Aligned_cols=67  Identities=13%  Similarity=0.240  Sum_probs=47.7

Q ss_pred             CCcccccCccccCCCceec---CCCCcccHhhHHHHHhc----CC---CCCCC--cccc--cCCCCCcccHHHHHHHHHH
Q 036338           11 PSFFRCPISLDVMKSPVSL---CTGVTYDRASIQRWLDS----GN---NTCPA--TMQV--LQSKEFVPNRTLQRLIQIW   76 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~---~cgh~f~r~cI~~~~~~----~~---~~CP~--~~~~--l~~~~l~~n~~l~~~I~~~   76 (408)
                      .+.+.||||.+.+.+|+++   +|||+||+.||.+||..    +.   ..||.  |+..  +.+..+ .+....+.+++|
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky   81 (94)
T 1wim_A            3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRY   81 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHH
T ss_pred             CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHH
Confidence            3578999999999999875   69999999999999863    32   36999  9887  543222 122224455555


Q ss_pred             HH
Q 036338           77 SD   78 (408)
Q Consensus        77 ~~   78 (408)
                      .+
T Consensus        82 ~~   83 (94)
T 1wim_A           82 KK   83 (94)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.90  E-value=5.2e-08  Score=90.82  Aligned_cols=215  Identities=12%  Similarity=0.026  Sum_probs=149.9

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH  179 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~  179 (408)
                      .++.|++.|.+.+.. +..|++.|..+..           . ++++.|+.+|.+++ ..+...|+.+|..+..  .+.. 
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~-~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~--~~~~-   87 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------Q-DAVRLAIEFCSDKN-YIRRDIGAFILGQIKI--CKKC-   87 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------H-HHHHHHHHHHTCSS-HHHHHHHHHHHHHSCC--CTTT-
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------c-hHHHHHHHHHcCCC-HHHHHHHHHHHHHhcc--cccc-
Confidence            477889999988877 8889999987752           2 67899999998876 3344889999988753  1111 


Q ss_pred             HHHHHhccCcccHHHHHH-HHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHH
Q 036338          180 LMNLILKRDQDCLNSLLL-VLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCL  258 (408)
Q Consensus       180 ~~~~i~~~~~g~i~~Lv~-lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL  258 (408)
                          +    ...++.|.. ++.+. +..+|..|+++|.++......    .. ..+++.|+.+|+++ ++.++..|+.+|
T Consensus        88 ----~----~~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~~----~~-~~~~~~L~~~l~d~-~~~vR~~a~~aL  152 (280)
T 1oyz_A           88 ----E----DNVFNILNNMALNDK-SACVRATAIESTAQRCKKNPI----YS-PKIVEQSQITAFDK-STNVRRATAFAI  152 (280)
T ss_dssp             ----H----HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGG----GH-HHHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred             ----c----hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCc----cc-HHHHHHHHHHhhCC-CHHHHHHHHHHH
Confidence                1    112444443 45666 899999999999998743210    11 35789999999987 999999999999


Q ss_pred             HHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcC
Q 036338          259 ITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAA  338 (408)
Q Consensus       259 ~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g  338 (408)
                      .++..          .++++.|+.+|.++                     +..++..|+.+|..+....         ..
T Consensus       153 ~~~~~----------~~~~~~L~~~l~d~---------------------~~~vr~~a~~aL~~~~~~~---------~~  192 (280)
T 1oyz_A          153 SVIND----------KATIPLLINLLKDP---------------------NGDVRNWAAFAININKYDN---------SD  192 (280)
T ss_dssp             HTC-------------CCHHHHHHHHTCS---------------------SHHHHHHHHHHHHHHTCCC---------HH
T ss_pred             HhcCC----------HHHHHHHHHHHcCC---------------------CHHHHHHHHHHHHhhccCc---------HH
Confidence            98754          35899999999864                     7889999999999985321         12


Q ss_pred             chHHHHHHHHH---HHHHH----H---HhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          339 LLNGVVQKMLK---TAQEA----V---SSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       339 ~i~~lv~~l~~---~~~~~----~---~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      .++.|++.|..   .++..    +   -...+++.|+.+++..   .+|..|...|..+..
T Consensus       193 ~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~---~vr~~a~~aL~~i~~  250 (280)
T 1oyz_A          193 IRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN---TVYDDIIEAAGELGD  250 (280)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSS---SCCHHHHHHHHHHCC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCc---cHHHHHHHHHHhcCc
Confidence            34555553322   22222    2   2456888998888753   267777777766543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.89  E-value=6.2e-08  Score=86.34  Aligned_cols=134  Identities=16%  Similarity=0.180  Sum_probs=106.9

Q ss_pred             ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338          142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD  221 (408)
Q Consensus       142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~  221 (408)
                      +.++.|+.+|.+++ ..+...|+..|..+.                ...+++.|+.+|.++ +..+|..|+.+|..+.  
T Consensus        19 ~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~----------------~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~--   78 (211)
T 3ltm_A           19 EKVEMYIKNLQDDS-YYVRRAAAYALGKIG----------------DERAVEPLIKALKDE-DAWVRRAAADALGQIG--   78 (211)
T ss_dssp             GGHHHHHHHTTCSS-HHHHHHHHHHHHHHC----------------CGGGHHHHHHHTTCS-CHHHHHHHHHHHHHHC--
T ss_pred             hHHHHHHHHHcCCC-HHHHHHHHHHHHHhC----------------CccHHHHHHHHHcCC-CHHHHHHHHHHHHhhC--
Confidence            78999999998766 333478888776542                335688899999998 9999999999998874  


Q ss_pred             cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCC
Q 036338          222 ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGN  301 (408)
Q Consensus       222 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~  301 (408)
                              . .+.++.|+++|+++ ++.++..|+.+|..+..          .++++.|+.+|.++              
T Consensus        79 --------~-~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--------------  124 (211)
T 3ltm_A           79 --------D-ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE--------------  124 (211)
T ss_dssp             --------C-GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--------------
T ss_pred             --------C-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC--------------
Confidence                    2 45789999999987 89999999999998854          35889999999754              


Q ss_pred             CCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHH
Q 036338          302 GNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKM  347 (408)
Q Consensus       302 ~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l  347 (408)
                             +..++..|+.+|..+..           ...++.|++++
T Consensus       125 -------~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l  152 (211)
T 3ltm_A          125 -------DWFVRIAAAFALGEIGD-----------ERAVEPLIKAL  152 (211)
T ss_dssp             -------SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT
T ss_pred             -------CHHHHHHHHHHHHHcCC-----------HHHHHHHHHHH
Confidence                   88999999999999853           24566666643

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.86  E-value=3.2e-10  Score=94.09  Aligned_cols=55  Identities=25%  Similarity=0.453  Sum_probs=48.3

Q ss_pred             CCcccccCccccCCCc-------eecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCccc
Q 036338           11 PSFFRCPISLDVMKSP-------VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN   66 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dP-------v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n   66 (408)
                      ++.+.||||++.|.+|       ++++|||+||..||.+|++. ..+||.|+.++...++.|+
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~  131 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI  131 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence            5678899999999998       88899999999999999986 4589999999887776664

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.86  E-value=2.1e-08  Score=105.76  Aligned_cols=199  Identities=14%  Similarity=0.168  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHH-HhhcCcchhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVE-ILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~-lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      ...|.++++.|++++++ |..|+.+|.+++. ++..+..+... |+|..++. +|.+++ ..++++|+++|.||+.  ..
T Consensus        33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~-~~v~~ll~~lL~D~~-~~Vr~~A~gaLrnL~~--~~  107 (684)
T 4gmo_A           33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLRE-QVVHIVLTETLTDNN-IDSRAAGWEILKVLAQ--EE  107 (684)
T ss_dssp             HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHT-THHHHHHHTTTTCSC-HHHHHHHHHHHHHHHH--HS
T ss_pred             hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHc-CCHHHHHHHHcCCCC-HHHHHHHHHHHHHHHh--hc
Confidence            44567899999999887 9999999999996 68899999988 88887665 565554 4455999999999986  33


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCC-------------Ch-------HHHHHHHHHHHHhhcCc-chhhHHhhhcChH
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQE-------------SV-------DSRIESLRLLEFIAGDA-DSKVKIAERDGLL  235 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~-------------~~-------~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i  235 (408)
                      ...+...+.  ..|++++|..+|++..             ..       +...++..+|.+||... +....+.. .+.+
T Consensus       108 g~d~~~~l~--~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l  184 (684)
T 4gmo_A          108 EADFCVHLY--RLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTI  184 (684)
T ss_dssp             CHHHHHHHH--HTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHH
T ss_pred             CchHHHHHH--HcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccH
Confidence            222344555  7899999999986410             01       12345778888888654 44556666 7899


Q ss_pred             HHHHHhcccC--CCHHHHHHHHHHHHHhccCcc-hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcch
Q 036338          236 AETVKSLSLD--SDRRLIEASLSCLITISSSKR-AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLI  312 (408)
Q Consensus       236 ~~Lv~lL~~~--~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (408)
                      +.|+.+|.+.  ...+++.+|+.+|++|+.... ....+.+.|....+..++...                   ..+...
T Consensus       185 ~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-------------------~~~~~~  245 (684)
T 4gmo_A          185 LRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-------------------TGTDPR  245 (684)
T ss_dssp             HHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-------------------HSSCTT
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-------------------cCCcHH
Confidence            9999998532  246899999999999999654 455555666543333333211                   113345


Q ss_pred             HHHHHHHHHHHh
Q 036338          313 TEKALRLVEILS  324 (408)
Q Consensus       313 ~~~a~~~L~~L~  324 (408)
                      +..++++|.|+.
T Consensus       246 ~~la~giL~Ni~  257 (684)
T 4gmo_A          246 AVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHh
Confidence            678889999873

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.81  E-value=1.4e-07  Score=83.39  Aligned_cols=175  Identities=15%  Similarity=0.185  Sum_probs=130.7

Q ss_pred             ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338          142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD  221 (408)
Q Consensus       142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~  221 (408)
                      +..+.++.+|.+++ ..+...|+.+|..+.                ....++.|+.+|.++ +..+|..|+.+|..+.  
T Consensus        14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~----------------~~~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~--   73 (201)
T 3ltj_A           14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIG----------------DERAVEPLIKALKDE-DAWVRRAAADALGQIG--   73 (201)
T ss_dssp             HHHHHHHHHTTCSC-HHHHHHHHHHHHHHC----------------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--
T ss_pred             cchHHHHHHhcCCC-HHHHHHHHHHHHhcC----------------ChhHHHHHHHHHcCC-CHHHHHHHHHHHHhhC--
Confidence            67889999999887 233388888876542                235688899999988 9999999999998764  


Q ss_pred             cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCC
Q 036338          222 ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGN  301 (408)
Q Consensus       222 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~  301 (408)
                              . ...++.|+++|.++ ++.++..|+++|..+..          ..+++.|+.+|.++              
T Consensus        74 --------~-~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--------------  119 (201)
T 3ltj_A           74 --------D-ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE--------------  119 (201)
T ss_dssp             --------C-GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--------------
T ss_pred             --------C-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC--------------
Confidence                    2 35789999999987 99999999999998754          35889999999754              


Q ss_pred             CCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH---HHH----HHHH---hcCcHHHHHHHHhhc
Q 036338          302 GNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK---TAQ----EAVS---SSNVLTKILLLMQSN  371 (408)
Q Consensus       302 ~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~---~~~----~~~~---~~g~~~~Ll~ll~~~  371 (408)
                             ++.++..|+.+|..+..           ...++.|++++..   .++    ..+.   ...+++.|..+++. 
T Consensus       120 -------~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d-  180 (201)
T 3ltj_A          120 -------DWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAET-  180 (201)
T ss_dssp             -------SHHHHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHH-
T ss_pred             -------CHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhC-
Confidence                   88999999999999854           2456666664322   222    2222   23456777777754 


Q ss_pred             CCHHHHHHHHHHHHHHhh
Q 036338          372 CTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       372 ~~~~~k~~A~~lL~~l~~  389 (408)
                      .++.+|..|...|..+..
T Consensus       181 ~~~~vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          181 GTGFARKVAVNYLETHKS  198 (201)
T ss_dssp             CCHHHHHHHHHHHHHCC-
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            468899999888776653

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=2.9e-09  Score=80.59  Aligned_cols=48  Identities=19%  Similarity=0.314  Sum_probs=39.9

Q ss_pred             CcccccCccccCCC--------------ceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           12 SFFRCPISLDVMKS--------------PVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        12 ~~~~Cpi~~~~~~d--------------Pv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      ++-.|+||++.|.+              ++++ +|||.|.+.||.+|+.. +.+||.||+++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence            45679999999988              4555 59999999999999986 4589999988643

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.79  E-value=2.5e-09  Score=77.02  Aligned_cols=48  Identities=21%  Similarity=0.216  Sum_probs=42.4

Q ss_pred             CCcccccCccccCCCceec--CCCCc-ccHhhHHHHHhcCCCCCCCcccccC
Q 036338           11 PSFFRCPISLDVMKSPVSL--CTGVT-YDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~--~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      +++..|+||.+-++|+|++  +|||. ||..|+.+|+.. +..||.||+++.
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence            4667899999999999988  99999 899999999974 457999998864

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.74  E-value=3.4e-09  Score=76.06  Aligned_cols=47  Identities=15%  Similarity=0.187  Sum_probs=41.4

Q ss_pred             CcccccCccccCCCceec--CCCCc-ccHhhHHHHHhcCCCCCCCcccccC
Q 036338           12 SFFRCPISLDVMKSPVSL--CTGVT-YDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~--~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      .+..|+||.+-++|++++  +|||. ||..|+.+|+.. ...||.||+++.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence            346799999999999988  99998 999999999975 467999999874

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.72  E-value=2.4e-09  Score=80.57  Aligned_cols=46  Identities=11%  Similarity=0.166  Sum_probs=40.7

Q ss_pred             CCCcccccCccccCCCceecCCCCc-ccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           10 VPSFFRCPISLDVMKSPVSLCTGVT-YDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      +.++..|+||.+.+++||+++|||. ||..|+..|+     .||.||+++..
T Consensus        15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~   61 (79)
T 2yho_A           15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH   61 (79)
T ss_dssp             HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred             CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence            3456789999999999999999999 9999999874     69999998754

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.66  E-value=1.7e-07  Score=98.97  Aligned_cols=149  Identities=13%  Similarity=0.102  Sum_probs=110.6

Q ss_pred             ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHH-hcccCCCHHHHHHHHHHHHHhccC--cc
Q 036338          190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVK-SLSLDSDRRLIEASLSCLITISSS--KR  266 (408)
Q Consensus       190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~A~~aL~~Ls~~--~~  266 (408)
                      ..|.|+++.|+++ +.+.|..|+.+|.+|+.++..+..+.. .|+|.+++. +|.+. +.+++++|++||+||+..  .+
T Consensus        34 ~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           34 DKILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             HTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHH
T ss_pred             hhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCch
Confidence            4466788889998 999999999999999998888888876 788887665 67765 899999999999999874  46


Q ss_pred             hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCC-------cchHHHHHHHHHHHhC-CHHHHHHHHhhcC
Q 036338          267 AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGT-------VLITEKALRLVEILST-TKQGRMEICQDAA  338 (408)
Q Consensus       267 n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g  338 (408)
                      .+..+++.|++++|+.+|....   .+...  ..... . ...       ..+.+.++.+|.+|+. +++....+... +
T Consensus       111 ~~~~l~~~~il~~L~~~l~~~~---~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~-~  182 (684)
T 4gmo_A          111 FCVHLYRLDVLTAIEHAAKAVL---ETLTT--SEPPF-S-KLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK-Q  182 (684)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHH---HHHHC--BTTBG-G-GSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC-H
T ss_pred             HHHHHHHcChHHHHHHHHHhhH---HHHhh--hcccc-c-cccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc-c
Confidence            7888999999999999986410   00000  00000 0 000       1345678889999985 56677777764 8


Q ss_pred             chHHHHHHHHH
Q 036338          339 LLNGVVQKMLK  349 (408)
Q Consensus       339 ~i~~lv~~l~~  349 (408)
                      +++.|+..|..
T Consensus       183 ~l~~l~~~L~~  193 (684)
T 4gmo_A          183 TILRLLFRLIS  193 (684)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cHHHHHHHHHh
Confidence            89999998765

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=2.3e-08  Score=72.86  Aligned_cols=47  Identities=17%  Similarity=0.142  Sum_probs=40.4

Q ss_pred             CCCCcccccCccccCCCceecCCCCc-ccHhhHHHHHhcCCCCCCCcccccCC
Q 036338            9 TVPSFFRCPISLDVMKSPVSLCTGVT-YDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      .-.++..|+||.+..++||+++|||. ||..|+..     ...||.||+++..
T Consensus        11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE   58 (68)
T ss_dssp             SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred             cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence            33457899999999999999999999 99999984     3579999998754

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.64  E-value=1.9e-08  Score=79.91  Aligned_cols=46  Identities=17%  Similarity=0.349  Sum_probs=39.3

Q ss_pred             cccccCccccCCCc------------------eecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338           13 FFRCPISLDVMKSP------------------VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        13 ~~~Cpi~~~~~~dP------------------v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      +-.|+||.+.|.+|                  +.++|||.|...||.+|+.. +.+||.||+++.
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~  100 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  100 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence            45799999999987                  34689999999999999985 678999998753

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.61  E-value=7.7e-09  Score=99.37  Aligned_cols=45  Identities=16%  Similarity=0.232  Sum_probs=40.5

Q ss_pred             CCcccccCccccCCCceecCCCCc-ccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           11 PSFFRCPISLDVMKSPVSLCTGVT-YDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      .+++.||||.+.+.+||+++|||+ ||+.|+..|     ..||.||.++..
T Consensus       293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            467899999999999999999999 999999988     469999988753

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.44  E-value=2.3e-07  Score=69.68  Aligned_cols=51  Identities=20%  Similarity=0.196  Sum_probs=42.5

Q ss_pred             CCCcccccCccccC--CCceecCCC-----CcccHhhHHHHHhcC-CCCCCCcccccCC
Q 036338           10 VPSFFRCPISLDVM--KSPVSLCTG-----VTYDRASIQRWLDSG-NNTCPATMQVLQS   60 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~--~dPv~~~cg-----h~f~r~cI~~~~~~~-~~~CP~~~~~l~~   60 (408)
                      ..++..|+||++.+  .+|++++|+     |.|-+.||.+|+... ..+||+|+..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            34567899999887  469999996     999999999999864 4689999998764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.37  E-value=1.9e-05  Score=85.17  Aligned_cols=275  Identities=11%  Similarity=0.137  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhh--hhh-hcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKT--FLA-KFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKI  174 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~--~i~-~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~  174 (408)
                      ++-++.|++.+.+.+.. +..++..|..++++.+..-.  .+. .....+|.++.++++.+ ..++..|+.+|.++..  
T Consensus       127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~--  203 (852)
T 4fdd_A          127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFII--  203 (852)
T ss_dssp             TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTT--
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHh--
Confidence            45788889999888777 88899999999876433211  000 01146777777777655 3445889999988775  


Q ss_pred             cchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338          175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS  254 (408)
Q Consensus       175 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A  254 (408)
                      ...+.....    -...++.|..++.++ +.++|..|+.+|..++........-.- .++++.+++++++. +..++..|
T Consensus       204 ~~~~~~~~~----~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~-~~~vr~~a  276 (852)
T 4fdd_A          204 SRTQALMLH----IDSFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ-DENVALEA  276 (852)
T ss_dssp             TTCHHHHTS----HHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCS-SHHHHHHH
T ss_pred             cccHHHHHH----HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCC-cHHHHHHH
Confidence            222211111    136788999999888 999999999999999875432111111 35788889998886 88999999


Q ss_pred             HHHHHHhccCcchHHHHH--hcCcHHHHHHHhccCCCCCC--CCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHH
Q 036338          255 LSCLITISSSKRAKTKLI--NHKLITELGKLITDGHNGNG--SGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGR  330 (408)
Q Consensus       255 ~~aL~~Ls~~~~n~~~~~--~~G~i~~Lv~lL~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~  330 (408)
                      +.++.+++.....+..+.  -...+|.|+..+........  .++ .+-+........+-.++..|..+|..|+....  
T Consensus       277 ~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d-~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--  353 (852)
T 4fdd_A          277 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD-VEGGSGGDDTISDWNLRKCSAAALDVLANVYR--  353 (852)
T ss_dssp             HHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHG--
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC-cccccccccccccchHHHHHHHHHHHHHHhcc--
Confidence            999999998654443222  13567777777721000000  000 00000000000234567888888888875321  


Q ss_pred             HHHHhhcCchHHHHHHHHH---HHHHHHH-----------------hcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          331 MEICQDAALLNGVVQKMLK---TAQEAVS-----------------SSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       331 ~~~~~~~g~i~~lv~~l~~---~~~~~~~-----------------~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      ..+..  ..+|.+.+.+..   ..++.++                 -.+.++.|+..+. +..+.+|..|...+..+..
T Consensus       354 ~~~~~--~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~-d~~~~Vr~~a~~~l~~l~~  429 (852)
T 4fdd_A          354 DELLP--HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS-DKKALVRSITCWTLSRYAH  429 (852)
T ss_dssp             GGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTHH
T ss_pred             HHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence            11111  234444443221   2222221                 1234555555554 5578899988888877665

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.31  E-value=2.3e-05  Score=84.48  Aligned_cols=192  Identities=10%  Similarity=0.062  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338          100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ  178 (408)
Q Consensus       100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~  178 (408)
                      ..++.++..+...+.+ +..|++.|..++...+..-....+  +.++.++.++++.+ ..+...|+..+..++.  .. .
T Consensus       215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~--~l~~~l~~~~~~~~-~~vr~~a~e~l~~l~~--~~-~  288 (852)
T 4fdd_A          215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH--NIVEYMLQRTQDQD-ENVALEACEFWLTLAE--QP-I  288 (852)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH--HHHHHHHHHHTCSS-HHHHHHHHHHHHHHTT--ST-T
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHHHHHHHHccCCc-HHHHHHHHHHHHHHhc--ch-h
Confidence            4566777777777777 889999999998876554322222  57888888887665 3344888888888874  22 1


Q ss_pred             HHHHHHhccCcccHHHHHHHHh-----------c-----------CCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHH
Q 036338          179 HLMNLILKRDQDCLNSLLLVLK-----------Q-----------QESVDSRIESLRLLEFIAGDADSKVKIAERDGLLA  236 (408)
Q Consensus       179 ~~~~~i~~~~~g~i~~Lv~lL~-----------~-----------~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~  236 (408)
                       .++.+.-.-...++.++..+.           .           . +..+|..|+.+|..|+....  ..+.  ..+++
T Consensus       289 -~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~-~~~vr~~a~~~L~~la~~~~--~~~~--~~l~~  362 (852)
T 4fdd_A          289 -CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTIS-DWNLRKCSAAALDVLANVYR--DELL--PHILP  362 (852)
T ss_dssp             -HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------C-CCCHHHHHHHHHHHHHHHHG--GGGH--HHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccc-cchHHHHHHHHHHHHHHhcc--HHHH--HHHHH
Confidence             134332001245666666652           2           1 23468889999999986543  1222  24788


Q ss_pred             HHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHH
Q 036338          237 ETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKA  316 (408)
Q Consensus       237 ~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  316 (408)
                      .|..++++. +...++.|+.+|.+++.+......-.-.++++.|+.+|.++                     ++.++..|
T Consensus       363 ~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~---------------------~~~Vr~~a  420 (852)
T 4fdd_A          363 LLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK---------------------KALVRSIT  420 (852)
T ss_dssp             HHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS---------------------SHHHHHHH
T ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC---------------------CHHHHHHH
Confidence            888888886 89999999999999998765322222366889999999754                     88999999


Q ss_pred             HHHHHHHhC
Q 036338          317 LRLVEILST  325 (408)
Q Consensus       317 ~~~L~~L~~  325 (408)
                      +.+|.+++.
T Consensus       421 ~~~l~~l~~  429 (852)
T 4fdd_A          421 CWTLSRYAH  429 (852)
T ss_dssp             HHHHHHTHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.30  E-value=8.9e-08  Score=77.16  Aligned_cols=45  Identities=20%  Similarity=0.413  Sum_probs=0.0

Q ss_pred             ccccCccccCCCc-----------------ee-cCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338           14 FRCPISLDVMKSP-----------------VS-LCTGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        14 ~~Cpi~~~~~~dP-----------------v~-~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      -.|+||++.|.+|                 ++ ++|||.|...||.+|+.. +.+||.||+++.
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  111 (117)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence            4799999999885                 32 489999999999999986 568999998753

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.24  E-value=7.3e-05  Score=76.21  Aligned_cols=185  Identities=10%  Similarity=0.059  Sum_probs=126.5

Q ss_pred             HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHH
Q 036338          102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHL  180 (408)
Q Consensus       102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~  180 (408)
                      ++.+.+.+...++. |..|+..|..++...+..  . ... ..+|.+..++.+.+ ..+...|+.+|..++.  .-..  
T Consensus       166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~-~~~-~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~--~~~~--  236 (588)
T 1b3u_A          166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--N-VKS-EIIPMFSNLASDEQ-DSVRLLAVEACVNIAQ--LLPQ--  236 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--H-HHH-THHHHHHHHHTCSC-HHHHTTHHHHHHHHHH--HSCH--
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--h-HHH-HHHHHHHHHhcCCc-HHHHHHHHHHHHHHHH--hCCH--
Confidence            44444555666666 888999999887653321  1 123 67888999887766 2334788888888764  1111  


Q ss_pred             HHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHH
Q 036338          181 MNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLIT  260 (408)
Q Consensus       181 ~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~  260 (408)
                       ..+   ....++.+..++.+. +..+|..|+.+|..++...... .+ . ..+++.++.+++++ ++.+++.|+.+|..
T Consensus       237 -~~~---~~~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~-~~-~-~~l~~~l~~~l~d~-~~~vr~~a~~~l~~  307 (588)
T 1b3u_A          237 -EDL---EALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPE-IT-K-TDLVPAFQNLMKDC-EAEVRAAASHKVKE  307 (588)
T ss_dssp             -HHH---HHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHH-HH-H-HTHHHHHHHHHTCS-SHHHHHHHHHHHHH
T ss_pred             -HHH---HHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCcc-cc-h-hHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence             111   235688888888887 8999999999999998643221 12 2 45799999999986 89999999999999


Q ss_pred             hccCcc--hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          261 ISSSKR--AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       261 Ls~~~~--n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      ++..-.  .+....-...+|.+..++.++                     +..++..++.+|..++.
T Consensus       308 ~~~~~~~~~~~~~~~~~l~p~l~~~l~d~---------------------~~~vR~~a~~~l~~l~~  353 (588)
T 1b3u_A          308 FCENLSADCRENVIMSQILPCIKELVSDA---------------------NQHVKSALASVIMGLSP  353 (588)
T ss_dssp             HHHTSCTTTHHHHHHHTHHHHHHHHHTCS---------------------CHHHHHHHHTTGGGGHH
T ss_pred             HHHHhChhhhhhHHHHHHHHHHHHHhcCC---------------------CHHHHHHHHHHHHHHHH
Confidence            876432  222223345677888887653                     66777777777777653

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.22  E-value=9.7e-05  Score=65.95  Aligned_cols=248  Identities=13%  Similarity=0.171  Sum_probs=166.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCCCCccCHHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhC-hhhhhhhhhcCChH
Q 036338           67 RTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNED-FSENLTKIVAFAKES-DENKTFLAKFDGLV  144 (408)
Q Consensus        67 ~~l~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~-~~~r~~i~~~~G~i  144 (408)
                      ..++.-+..|.-+.....    ...      +++.+..|++.|...+.. +.+++..|..+.++- ...+..+.+  ..+
T Consensus        10 ~~lre~L~sWkiK~a~el----a~~------~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e--~~L   77 (265)
T 3b2a_A           10 TELRELVLSWQILDAVSL----ALE------DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE--RHL   77 (265)
T ss_dssp             HHHHHHHHTTCHHHHHHH----HHH------CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HHH
T ss_pred             HHHHHHHHHhhHHHHHHH----HHh------chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH--HHH
Confidence            456777777755432100    000      266788888999888877 999999999998873 445555555  579


Q ss_pred             HHHHHHhhcCcchhhHHHHHHHHHHhccccc-chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc
Q 036338          145 VMLVEILSNVNDVNMLKQVIRVLDLILNKIE-DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD  223 (408)
Q Consensus       145 ~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~-~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~  223 (408)
                      +.++.++++.+ .++.-.|+.+|..|..+.. +++++..        .+..|..++.++ +.-.+.+|+..|..+.-...
T Consensus        78 d~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~~~y~K--------l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~  147 (265)
T 3b2a_A           78 DVFINALSQEN-EKVTIKALRALGYLVKDVPMGSKTFLK--------AAKTLVSLLESP-DDMMRIETIDVLSKLQPLED  147 (265)
T ss_dssp             HHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCHHHHHH--------HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCC
T ss_pred             HHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCHHHHHH--------HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccc
Confidence            99999997776 5555778888887764211 2222222        356778888888 99999999999999932222


Q ss_pred             hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 036338          224 SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGN  303 (408)
Q Consensus       224 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~  303 (408)
                             ..+++..|.+++.+. +++++.+|.++|.+++...++..  +-.+++.-+-++|++.                
T Consensus       148 -------~~~V~~~l~sLl~Sk-d~~vK~agl~~L~eia~~S~D~~--i~~~I~~eI~elL~~e----------------  201 (265)
T 3b2a_A          148 -------SKLVRTYINELVVSP-DLYTKVAGFCLFLNMLNSSADSG--HLTLILDEIPSLLQND----------------  201 (265)
T ss_dssp             -------CHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHGGGCSSCC--CGGGTTTTHHHHHTCS----------------
T ss_pred             -------hHHHHHHHHHHHhCC-ChhHHHHHHHHHHHhhcccCCHH--HHHHHHHHHHHHHcCC----------------
Confidence                   245667788888765 99999999999999988543211  1123445566777753                


Q ss_pred             CCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhcCcHHHHHHHHh-hcCCHHHHHHHHH
Q 036338          304 GSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQ-SNCTPAVRQMSAD  382 (408)
Q Consensus       304 ~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~~~~~~~~~~g~~~~Ll~ll~-~~~~~~~k~~A~~  382 (408)
                           |+.+++.|+.+|..+...+     +.  +..++.+.+. +              ..+.-|- -.+.|..|.+|+.
T Consensus       202 -----D~~l~e~aLd~Le~ils~p-----i~--~~~~~~~~~~-~--------------~~v~~l~~~~~~~~~~~ka~~  254 (265)
T 3b2a_A          202 -----NEFIVELALDVLEKALSFP-----LL--ENVKIELLKI-S--------------RIVDGLVYREGAPIIRLKAKK  254 (265)
T ss_dssp             -----CHHHHHHHHHHHHHHTTSC-----CC--SCCHHHHHHH-H--------------HHHHHGGGCSSCHHHHHHHHH
T ss_pred             -----CHHHHHHHHHHHHHHHcCc-----cc--HhHHHHHHHH-H--------------HHHHHHHHhcCChhHHHHHHH
Confidence                 9999999999999998753     22  2556666652 1              1112222 3456778888877


Q ss_pred             HHHHHhh
Q 036338          383 LLKIFRV  389 (408)
Q Consensus       383 lL~~l~~  389 (408)
                      +...+-.
T Consensus       255 v~~~le~  261 (265)
T 3b2a_A          255 VSDLIDS  261 (265)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666543

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.12  E-value=4.9e-05  Score=69.02  Aligned_cols=181  Identities=15%  Similarity=0.202  Sum_probs=129.0

Q ss_pred             HHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhh-cCcchhhHHHHHHHHHHhcccccchHHHHH
Q 036338          105 IIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILS-NVNDVNMLKQVIRVLDLILNKIEDQQHLMN  182 (408)
Q Consensus       105 Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~-s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~  182 (408)
                      +.+.+.+.+-. |..|+..|..+...++.....  .....++.|..+|. +.+ .++...|+.+|..|+.....  .+..
T Consensus        20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~--~~~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~--~~~~   94 (242)
T 2qk2_A           20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG--EYGALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAK--RFSN   94 (242)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC--CCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGG--GGHH
T ss_pred             HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC--CHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhh--hHHH
Confidence            66778777766 999999999998774332111  11145777888884 544 44558899999888752111  1122


Q ss_pred             HHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhc
Q 036338          183 LILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITIS  262 (408)
Q Consensus       183 ~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls  262 (408)
                      .+    ...++.|+..+.+. +..+|..|..+|..+.....    +   ..+++.|...|++. ++.++..++..|..+.
T Consensus        95 ~~----~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~----~---~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l  161 (242)
T 2qk2_A           95 YA----SACVPSLLEKFKEK-KPNVVTALREAIDAIYASTS----L---EAQQESIVESLSNK-NPSVKSETALFIARAL  161 (242)
T ss_dssp             HH----HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSC----H---HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHH
T ss_pred             HH----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCC----H---HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHH
Confidence            22    35689999999988 99999999999999986543    1   24688899999987 8999999999999954


Q ss_pred             -cCcch--HHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          263 -SSKRA--KTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       263 -~~~~n--~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                       .....  -.... ...+|.|+.+|.++                     +..++..|..+|..++.
T Consensus       162 ~~~~~~~~~~~~l-~~l~p~l~~~l~D~---------------------~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          162 TRTQPTALNKKLL-KLLTTSLVKTLNEP---------------------DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             TTCCGGGCCHHHH-HHHHHHHHHHHTSS---------------------CHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCccHHHH-HHHHHHHHHHhcCC---------------------ChHHHHHHHHHHHHHHH
Confidence             43211  11222 25789999999754                     78899999999998875

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.08  E-value=0.00048  Score=67.77  Aligned_cols=261  Identities=11%  Similarity=0.069  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHHhcC--Chh-HHHHHHHHHHHhhhC-hhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccc
Q 036338           99 QDEVKDIIRVAISK--NED-FSENLTKIVAFAKES-DENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNK  173 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~--~~~-~~~Al~~L~~la~~~-~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~  173 (408)
                      ++-++.|++.+.+.  +.. +..|+..|..++++. +..-.....  ..++.++.+|.+.. +..+...|+.+|.++.. 
T Consensus       127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~-  203 (462)
T 1ibr_B          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN--EILTAIIQGMRKEEPSNNVKLAATNALLNSLE-  203 (462)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH--HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-
Confidence            45788889999887  766 888999999998753 222111221  56788888888763 34455889999988653 


Q ss_pred             ccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh--hHHhhhc-ChHHHHHHhcccCCCHHH
Q 036338          174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK--VKIAERD-GLLAETVKSLSLDSDRRL  250 (408)
Q Consensus       174 ~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~--~~i~~~~-g~i~~Lv~lL~~~~~~~~  250 (408)
                       .-.+.......  ..-.++.+...+.+. +.++|..++.+|..++......  ..+   . ++++.++..+++. +..+
T Consensus       204 -~~~~~~~~~~~--~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~-~~~v  275 (462)
T 1ibr_B          204 -FTKANFDKESE--RHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM---GPALFAITIEAMKSD-IDEV  275 (462)
T ss_dssp             -TTHHHHTSHHH--HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTT---TTTHHHHHHHHHHCS-SHHH
T ss_pred             -HHHHhhhhhHH--HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCC-chHH
Confidence             11111000000  112366666667777 8999999999999998654321  111   3 6788888888876 8899


Q ss_pred             HHHHHHHHHHhccCcchHH------------------HHHh---cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCC
Q 036338          251 IEASLSCLITISSSKRAKT------------------KLIN---HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGT  309 (408)
Q Consensus       251 ~~~A~~aL~~Ls~~~~n~~------------------~~~~---~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~  309 (408)
                      +..|+.++..++.......                  .+++   ...+|.|+..|...    .        ..  -.+.+
T Consensus       276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~----d--------~d--~~~~~  341 (462)
T 1ibr_B          276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ----D--------EN--DDDDD  341 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCC----C--------SS--CCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhc----c--------cc--ccccc
Confidence            9999999999876431110                  0111   34677777777542    0        00  00224


Q ss_pred             cchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH---HHHHHHH-------h-----------cCcHHHHHHHH
Q 036338          310 VLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK---TAQEAVS-------S-----------SNVLTKILLLM  368 (408)
Q Consensus       310 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~---~~~~~~~-------~-----------~g~~~~Ll~ll  368 (408)
                      ..++..|..+|..|+..-.  ..+..  ..+|.+.+.|..   ..++.++       +           ...++.|+..|
T Consensus       342 ~~~r~~a~~~L~~l~~~~~--~~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l  417 (462)
T 1ibr_B          342 WNPCKAAGVCLMLLATCCE--DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM  417 (462)
T ss_dssp             CSHHHHHHHHHHHHHHHTT--TTHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGG
T ss_pred             chHHHHHHHHHHHHHHhcc--HHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence            5778888899988875211  11211  234434332211   2222221       1           23566666666


Q ss_pred             hhcCCHHHHHHHHHHHHHHhh
Q 036338          369 QSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       369 ~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      +. ..+.+|..|..+|..+..
T Consensus       418 ~d-~~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          418 KD-PSVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             GC-SCHHHHHHHHHHHHHHHH
T ss_pred             cC-CCHHHHHHHHHHHHHHHH
Confidence            54 468899999998888877

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.05  E-value=0.00013  Score=74.21  Aligned_cols=24  Identities=8%  Similarity=0.210  Sum_probs=17.8

Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          366 LLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       366 ~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      .-+..+.++.+|+.|..++..+..
T Consensus       564 ~~l~~d~d~~vr~~a~~al~~l~~  587 (588)
T 1b3u_A          564 EKLTQDQDVDVKYFAQEALTVLSL  587 (588)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred             HHHcCCCchhHHHHHHHHHHHhhc
Confidence            334567788999999888887653

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.05  E-value=1.1e-06  Score=72.32  Aligned_cols=118  Identities=18%  Similarity=0.174  Sum_probs=82.1

Q ss_pred             ChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 036338          142 GLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG  220 (408)
Q Consensus       142 G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~  220 (408)
                      ..++.|+.+|++++ ..+  ..|+.+|..+.                + ..++.|+.+|++. +..+|..|+++|.++..
T Consensus        12 ~~~~~l~~~L~~~~~~vR--~~A~~~L~~~~----------------~-~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~   71 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVR--RDVSTALSRMG----------------D-EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD   71 (131)
T ss_dssp             ---------CCSSCCCSS--SSCCSSTTSCS----------------S-TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS
T ss_pred             ccHHHHHHHhcCCCHHHH--HHHHHHHHHhC----------------c-hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC
Confidence            56778888887766 444  55555544321                1 1268888999988 99999999999988652


Q ss_pred             CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCC
Q 036338          221 DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNG  300 (408)
Q Consensus       221 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~  300 (408)
                                 ...++.|+++|+++ ++.++..|+++|.++..          ..+++.|+.+|.++             
T Consensus        72 -----------~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~-------------  116 (131)
T 1te4_A           72 -----------ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG-------------  116 (131)
T ss_dssp             -----------HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC-------------
T ss_pred             -----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-------------
Confidence                       34689999999887 88999999999998862          34689999999753             


Q ss_pred             CCCCCCCCCcchHHHHHHHHHH
Q 036338          301 NGNGSGNGTVLITEKALRLVEI  322 (408)
Q Consensus       301 ~~~~~~~~~~~~~~~a~~~L~~  322 (408)
                              +..++..|+.+|..
T Consensus       117 --------~~~vr~~A~~aL~~  130 (131)
T 1te4_A          117 --------TGFARKVAVNYLET  130 (131)
T ss_dssp             --------CTHHHHHHHHHGGG
T ss_pred             --------CHHHHHHHHHHHHh
Confidence                    77888888888754

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.02  E-value=3.1e-05  Score=80.14  Aligned_cols=178  Identities=16%  Similarity=0.197  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      ...+..+-+.|++.+.+ +.+++..|..+..-...       .+.+.+.+++++.+.+ ......+...+.+++.  .+.
T Consensus        12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d-------~~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~--~~~   81 (591)
T 2vgl_B           12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKD-------VSSLFPDVVNCMQTDN-LELKKLVYLYLMNYAK--SQP   81 (591)
T ss_dssp             SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCC-------CGGGHHHHHHTTSSSC-HHHHHHHHHHHHHHHH--HSH
T ss_pred             CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCC-------hHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcc--cCc
Confidence            45677888889988877 77888777655432221       1245677888887766 2222555555555543  222


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                      +   ..+     -++..|.+-|.+. ++..|..|..+|.++. .+    .+.  ...++.+.++|.+. ++.+++.|+.+
T Consensus        82 e---~~~-----l~~n~l~kdL~~~-n~~ir~~AL~~L~~i~-~~----~~~--~~l~~~l~~~L~d~-~~~VRk~A~~a  144 (591)
T 2vgl_B           82 D---MAI-----MAVNSFVKDCEDP-NPLIRALAVRTMGCIR-VD----KIT--EYLCEPLRKCLKDE-DPYVRKTAAVC  144 (591)
T ss_dssp             H---HHH-----TTHHHHGGGSSSS-SHHHHHHHHHHHHTCC-SG----GGH--HHHHHHHHHHSSCS-CHHHHHHHHHH
T ss_pred             h---HHH-----HHHHHHHHHcCCC-CHHHHHHHHHHHHcCC-hH----HHH--HHHHHHHHHHcCCC-ChHHHHHHHHH
Confidence            2   112     2366777778888 9999999988888775 22    132  24678899999986 99999999999


Q ss_pred             HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338          258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT  326 (408)
Q Consensus       258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~  326 (408)
                      |.++......  .+.+.+.++.|..+|.++                     ++.++..|+.+|..++..
T Consensus       145 l~~i~~~~p~--~~~~~~~~~~l~~lL~d~---------------------d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          145 VAKLHDINAQ--MVEDQGFLDSLRDLIADS---------------------NPMVVANAVAALSEISES  190 (591)
T ss_dssp             HHHHHHSSCC--CHHHHHHHHHHHHTTSCS---------------------CHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhhChh--hcccccHHHHHHHHhCCC---------------------ChhHHHHHHHHHHHHHhh
Confidence            9999874332  222468899999999754                     889999999999999864

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.96  E-value=8.5e-05  Score=68.16  Aligned_cols=193  Identities=11%  Similarity=0.137  Sum_probs=128.9

Q ss_pred             HHHHHhcCChh-HHHHHHHHHH-HhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHH-
Q 036338          105 IIRVAISKNED-FSENLTKIVA-FAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLM-  181 (408)
Q Consensus       105 Lv~~L~s~~~~-~~~Al~~L~~-la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~-  181 (408)
                      +.+.+++.+-. |.+|+..|.. +..++++....-.+....+..|...|....+..++..|+.+|..|+..... +.+. 
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~-~~f~~   99 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT-PGFSK   99 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT-TTSCH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-ccccH
Confidence            45567777765 9999999999 876544322101121145667778884333355568899999988752110 1111 


Q ss_pred             HHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 036338          182 NLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI  261 (408)
Q Consensus       182 ~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L  261 (408)
                      ...    .-.++.++..+... ...++..+..+|..++..-+.-.....-...++.|+..|++. ++.+++.++.+|..+
T Consensus       100 ~y~----~~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~  173 (249)
T 2qk1_A          100 DYV----SLVFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNAS  173 (249)
T ss_dssp             HHH----HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHH
T ss_pred             HHH----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHH
Confidence            111    23588899999887 889999999999888764321111110124788999999987 899999999999998


Q ss_pred             ccCcch--HH--HHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          262 SSSKRA--KT--KLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       262 s~~~~n--~~--~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      ......  ..  ..+....+|.|..+|.+.                     ++.+++.|..+|..++.
T Consensus       174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~---------------------~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDT---------------------QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHCCSCSHHHHHHHTTTHHHHHHHHHTCS---------------------SHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCcchhHHHHHHHHHHHHHHHHhcCC---------------------CHHHHHHHHHHHHHHHH
Confidence            764332  11  122257889999999753                     88999999999988864

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.94  E-value=0.00019  Score=80.33  Aligned_cols=250  Identities=10%  Similarity=0.160  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      +..+..+++.+.+.+.+ |..|...|.+....+...-..-... ..++.|+..|.+.+ .+++..|+.+|..++....+ 
T Consensus         5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~-~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~-   81 (1230)
T 1u6g_C            5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSER-KVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE-   81 (1230)
T ss_dssp             CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHH-HHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH-
T ss_pred             HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHH-HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH-
Confidence            45688899999999988 8889999887765421100000111 46777888887554 44448899999988752222 


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh-------hHHhhhcChHHHHHHhcccCCCHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK-------VKIAERDGLLAETVKSLSLDSDRRL  250 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~-------~~i~~~~g~i~~Lv~lL~~~~~~~~  250 (408)
                      +. ..       .+++.|+..|.+. +..+|..|+.+|..++..-...       ....  ...+|.|+..+.+..+..+
T Consensus        82 ~~-~~-------~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~--~~llp~L~~~l~~~~~~~~  150 (1230)
T 1u6g_C           82 YQ-VE-------TIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVC--KKITGRLTSAIAKQEDVSV  150 (1230)
T ss_dssp             HH-HH-------HHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHH--HHHHHHHHHHHSCCSCHHH
T ss_pred             HH-HH-------HHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHHH--HHHHHHHHHHHcCCCchHH
Confidence            21 22       3467788888887 8889999999999887543211       1122  4589999999984238899


Q ss_pred             HHHHHHHHHHhccCcch-HHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHH
Q 036338          251 IEASLSCLITISSSKRA-KTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQG  329 (408)
Q Consensus       251 ~~~A~~aL~~Ls~~~~n-~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~  329 (408)
                      +..|+.+|..++..... -.. .-...++.|+..|.++                     +..+++.|+.+|..++.....
T Consensus       151 ~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~---------------------~~~vR~~a~~al~~l~~~~~~  208 (1230)
T 1u6g_C          151 QLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSP---------------------RLAVRKRTIIALGHLVMSCGN  208 (1230)
T ss_dssp             HHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCS---------------------SHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCC---------------------cHHHHHHHHHHHHHHHHhcCH
Confidence            99999999998852110 000 1133566777777653                     678999999999999874221


Q ss_pred             HHHHHhhcCchHHHHHHHHH-----------HHHHHHHh----------cCcHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036338          330 RMEICQDAALLNGVVQKMLK-----------TAQEAVSS----------SNVLTKILLLMQSNCTPAVRQMSADLLKIFR  388 (408)
Q Consensus       330 ~~~~~~~~g~i~~lv~~l~~-----------~~~~~~~~----------~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~  388 (408)
                        .+.  ...++.+++.|..           +....+..          ...++.++..++. ..+.+|+.|..++..+.
T Consensus       209 --~~~--~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d-~~~~vR~~a~~~l~~l~  283 (1230)
T 1u6g_C          209 --IVF--VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNV-DDDELREYCIQAFESFV  283 (1230)
T ss_dssp             ----C--TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSS-CCTTTHHHHHHHHHHHH
T ss_pred             --HHH--HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence              122  1346666665543           12222221          3456667666654 45668888888887776


Q ss_pred             h
Q 036338          389 V  389 (408)
Q Consensus       389 ~  389 (408)
                      .
T Consensus       284 ~  284 (1230)
T 1u6g_C          284 R  284 (1230)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=97.94  E-value=0.00034  Score=72.26  Aligned_cols=167  Identities=14%  Similarity=0.150  Sum_probs=113.9

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH  179 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~  179 (408)
                      -++.+.+.+.+.++. |..|+.++..+...+++   .+.+. +.++.|..+|.+.+ ..++..|+.+|..++.  .+.+.
T Consensus       122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~-~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~--~~~~~  194 (591)
T 2vgl_B          122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQ-GFLDSLRDLIADSN-PMVVANAVAALSEISE--SHPNS  194 (591)
T ss_dssp             HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHH-HHHHHHHHTTSCSC-HHHHHHHHHHHHHHTT--SCCSC
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccc-cHHHHHHHHhCCCC-hhHHHHHHHHHHHHHh--hCCCc
Confidence            345577778877777 99999999999876554   33445 78999999998655 4455999999999986  33210


Q ss_pred             HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338          180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI  259 (408)
Q Consensus       180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~  259 (408)
                       .....  ..+.+..|+..|... ++-.+.....+|..++..++  ..   ...+++.+..+|++. ++.++-.|++++.
T Consensus       195 -~~~~l--~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~--~~---~~~~l~~l~~~l~~~-~~~V~~ea~~~i~  264 (591)
T 2vgl_B          195 -NLLDL--NPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDD--RE---AQSICERVTPRLSHA-NSAVVLSAVKVLM  264 (591)
T ss_dssp             -CSCCC--HHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSH--HH---HHHHHHHHTTCSCSS-TTHHHHHHHHHHH
T ss_pred             -cchhc--cHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCCh--HH---HHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence             00111  235677888888877 88888888887777764332  11   135788899999886 8899999999999


Q ss_pred             Hhcc----CcchHHHHHhcCcHHHHHHHhc
Q 036338          260 TISS----SKRAKTKLINHKLITELGKLIT  285 (408)
Q Consensus       260 ~Ls~----~~~n~~~~~~~G~i~~Lv~lL~  285 (408)
                      .+..    +++....+ -..++++|+.++.
T Consensus       265 ~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~  293 (591)
T 2vgl_B          265 KFLELLPKDSDYYNML-LKKLAPPLVTLLS  293 (591)
T ss_dssp             HSCCSCCBTTBSHHHH-HHHTHHHHHHHTT
T ss_pred             HHhhccCCCHHHHHHH-HHHHHHHHHHHhc
Confidence            9874    22322222 2345566666554

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.90  E-value=0.0008  Score=63.50  Aligned_cols=179  Identities=12%  Similarity=0.106  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338          100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ  178 (408)
Q Consensus       100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~  178 (408)
                      -.+..+++.|.+++.+ +..++..|+.+..++...-..++.. +|+..|+.+....+ ...+..++.+|.+|..  +.+.
T Consensus       118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~-~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~--~v~G  193 (339)
T 3dad_A          118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHS-EGLSCLIRVGAAAD-HNYQSYILRALGQLML--FVDG  193 (339)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHT-THHHHHHHHHTTSC-HHHHHHHHHHHHHHTT--SHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHh-ccHHHHHHHHHhcC-hHHHHHHHHHHHHHHh--cccc
Confidence            3577889999988766 9999999999555567777788888 99999999998776 3345999999999986  5544


Q ss_pred             HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcC----------hHHHHHHhcc--cCC
Q 036338          179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDG----------LLAETVKSLS--LDS  246 (408)
Q Consensus       179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g----------~i~~Lv~lL~--~~~  246 (408)
                       +..++.  ....|..++.++.+. ...+...|..+|..++...+....+...+=          .+..|+.+|+  ++.
T Consensus       194 -m~gvvs--~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~  269 (339)
T 3dad_A          194 -MLGVVA--HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA  269 (339)
T ss_dssp             -HHHHHH--CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC
T ss_pred             -ccchhC--CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC
Confidence             345554  677899999999987 889999999999999887654433332111          2568999997  223


Q ss_pred             CHHHHHHHHHHHHHhccC-c--chHHHHH----hcCcHHHHHHHhcc
Q 036338          247 DRRLIEASLSCLITISSS-K--RAKTKLI----NHKLITELGKLITD  286 (408)
Q Consensus       247 ~~~~~~~A~~aL~~Ls~~-~--~n~~~~~----~~G~i~~Lv~lL~~  286 (408)
                      +.+.+..|...|-.+-.. +  +.+..++    +.|.=..+..+|+.
T Consensus       270 D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~  316 (339)
T 3dad_A          270 DPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT  316 (339)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence            888888887766655332 2  3344444    34544566666765

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.83  E-value=4.6e-06  Score=68.49  Aligned_cols=120  Identities=17%  Similarity=0.080  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      +..++.++..|++.+.. |..|++.|..+.           +  ..++.|+.+|++++ ..+...|+.+|.++.    + 
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~-----------~--~~~~~L~~~L~d~~-~~vR~~A~~aL~~~~----~-   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMG-----------D--EAFEPLLESLSNED-WRIRGAAAWIIGNFQ----D-   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCS-----------S--TTHHHHHHGGGCSC-HHHHHHHHHHHGGGC----S-
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhC-----------c--hHHHHHHHHHcCCC-HHHHHHHHHHHHhcC----C-
Confidence            44566778888877766 666776665432           1  23688999998765 444488998887763    1 


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                                 ...++.|+.+|++. +..+|..|+++|.++.          . ..+++.|+.+|+++ ++.++..|+.+
T Consensus        72 -----------~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~----------~-~~a~~~L~~~l~d~-~~~vr~~A~~a  127 (131)
T 1te4_A           72 -----------ERAVEPLIKLLEDD-SGFVRSGAARSLEQIG----------G-ERVRAAMEKLAETG-TGFARKVAVNY  127 (131)
T ss_dssp             -----------HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHC----------S-HHHHHHHHHHTTSC-CTHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----------c-HHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence                       23477888999988 9999999999999875          2 35689999999886 88999999999


Q ss_pred             HHHh
Q 036338          258 LITI  261 (408)
Q Consensus       258 L~~L  261 (408)
                      |.++
T Consensus       128 L~~i  131 (131)
T 1te4_A          128 LETH  131 (131)
T ss_dssp             GGGC
T ss_pred             HHhC
Confidence            8653

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.79  E-value=1.5e-05  Score=61.06  Aligned_cols=46  Identities=13%  Similarity=0.099  Sum_probs=39.6

Q ss_pred             cccCccccCCC-ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           15 RCPISLDVMKS-PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        15 ~Cpi~~~~~~d-Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      .|++|.-.+.. -.++||+|.||..|+..|.+++...||.|+.++..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            69999888877 44679999999999999998888899999987654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=97.71  E-value=0.00071  Score=66.56  Aligned_cols=191  Identities=14%  Similarity=0.086  Sum_probs=123.4

Q ss_pred             HHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHH
Q 036338          104 DIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMN  182 (408)
Q Consensus       104 ~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~  182 (408)
                      .+.+.+.+.+.+ +..+++.|..++...+..-...... +.++.++..+++.+ ..+...|+..+..++.  ...+ ...
T Consensus       221 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~-~~v~~~a~~~l~~~~~--~~~~-~~~  295 (462)
T 1ibr_B          221 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP-ALFAITIEAMKSDI-DEVALQGIEFWSNVCD--EEMD-LAI  295 (462)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTT-THHHHHHHHHHCSS-HHHHHHHHHHHHHHHH--HHHH-HHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCc-hHHHHHHHHHHHHHHH--HHHH-HHH
Confidence            333344455556 8889999998887654322122222 67888888776655 3344788888877764  1100 000


Q ss_pred             ------------------HHhccCcccHHHHHHHHhcC------CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHH
Q 036338          183 ------------------LILKRDQDCLNSLLLVLKQQ------ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAET  238 (408)
Q Consensus       183 ------------------~i~~~~~g~i~~Lv~lL~~~------~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~L  238 (408)
                                        .+...-...+|.++..|...      .+...|..|+.+|..|+..-. . .+.  ..+++.+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~-~~~--~~~~~~l  371 (462)
T 1ibr_B          296 EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-D-DIV--PHVLPFI  371 (462)
T ss_dssp             HHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-T-THH--HHHHHHH
T ss_pred             hcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-H-HHH--HHHHHHH
Confidence                              00000023456666666432      134688999999999987544 2 222  3478888


Q ss_pred             HHhcccCCCHHHHHHHHHHHHHhccCcc-hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Q 036338          239 VKSLSLDSDRRLIEASLSCLITISSSKR-AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKAL  317 (408)
Q Consensus       239 v~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  317 (408)
                      ...|.+. +...+++|+.+|..++.+.. ....-.-..++|.|+.+|.++                     ++.++..|+
T Consensus       372 ~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~---------------------~~~Vr~~a~  429 (462)
T 1ibr_B          372 KEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP---------------------SVVVRDTAA  429 (462)
T ss_dssp             HHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS---------------------CHHHHHHHH
T ss_pred             HHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC---------------------CHHHHHHHH
Confidence            8889886 89999999999999997543 110001256899999999864                     789999999


Q ss_pred             HHHHHHhC
Q 036338          318 RLVEILST  325 (408)
Q Consensus       318 ~~L~~L~~  325 (408)
                      .+|.+++.
T Consensus       430 ~~l~~~~~  437 (462)
T 1ibr_B          430 WTVGRICE  437 (462)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999985

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.70  E-value=7.8e-05  Score=54.67  Aligned_cols=47  Identities=15%  Similarity=0.316  Sum_probs=38.1

Q ss_pred             cccccCccccCCCceec-CCCCcccHhhHHHHHhcC-CCCCCCcccccC
Q 036338           13 FFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSG-NNTCPATMQVLQ   59 (408)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~-~~~CP~~~~~l~   59 (408)
                      ...|+||.+++..=..- .|||.|=..||.+||+.. ..+||.|+..+.
T Consensus        15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            35799999999753333 699999999999999863 378999998754

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.65  E-value=0.002  Score=68.67  Aligned_cols=197  Identities=10%  Similarity=0.138  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHhcCC--hh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcC-------------c-chhhHH
Q 036338           99 QDEVKDIIRVAISKN--ED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNV-------------N-DVNMLK  161 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~--~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~-------------~-~~~~~e  161 (408)
                      +.-++.|+..+.+.+  .. +..++..|..++...+........  ..+|.++..|...             + ...++.
T Consensus       497 ~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~  574 (861)
T 2bpt_A          497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA--SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQS  574 (861)
T ss_dssp             HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH--HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH--HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHH
Confidence            344667777777544  34 778888888887664432222222  4677788877642             1 122346


Q ss_pred             HHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCCh-HHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHH
Q 036338          162 QVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESV-DSRIESLRLLEFIAGDADSKVKIAERDGLLAETVK  240 (408)
Q Consensus       162 ~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~-~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~  240 (408)
                      .++.+|..++...++  .+...    -...++.++..++.. +. .+|+.+..++..++........-.- ..++|.|+.
T Consensus       575 ~~~~~l~~l~~~~~~--~~~~~----~~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~  646 (861)
T 2bpt_A          575 NILTVLAAVIRKSPS--SVEPV----ADMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLK  646 (861)
T ss_dssp             HHHHHHHHHHHHCGG--GTGGG----HHHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhh--hhHHH----HHHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHH
Confidence            677788777642111  11111    135678888888887 66 8899999999988764322111111 347899999


Q ss_pred             hcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 036338          241 SLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLV  320 (408)
Q Consensus       241 lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L  320 (408)
                      .|.+. +..++..|+.++..++..-.....-.-...++.++..|.++                   +.+..+++.++.++
T Consensus       647 ~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-------------------~~~~~vr~~~~~~l  706 (861)
T 2bpt_A          647 ALNQV-DSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP-------------------NARRELKPAVLSVF  706 (861)
T ss_dssp             HHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT-------------------TCCTTHHHHHHHHH
T ss_pred             Hhccc-cHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCc-------------------cccHhhhHHHHHHH
Confidence            99765 77899999999998876433211111245778888888753                   23578999999999


Q ss_pred             HHHhC
Q 036338          321 EILST  325 (408)
Q Consensus       321 ~~L~~  325 (408)
                      ..++.
T Consensus       707 ~~l~~  711 (861)
T 2bpt_A          707 GDIAS  711 (861)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98876

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.60  E-value=0.0078  Score=62.37  Aligned_cols=190  Identities=13%  Similarity=0.123  Sum_probs=121.7

Q ss_pred             HHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHH
Q 036338          104 DIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMN  182 (408)
Q Consensus       104 ~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~  182 (408)
                      ..++.+.+.+.+ |.-.--.+..++..+++...      -++..|.+-|.+++ ..+...|+.+|.++..    .+    
T Consensus        74 ~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~------l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~----~~----  138 (618)
T 1w63_A           74 ECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL------LMTNCIKNDLNHST-QFVQGLALCTLGCMGS----SE----  138 (618)
T ss_dssp             HHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH------HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC----HH----
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH------HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC----HH----
Confidence            445566666655 43344455566655443222      23555777777665 2234889999999863    22    


Q ss_pred             HHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhc
Q 036338          183 LILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITIS  262 (408)
Q Consensus       183 ~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls  262 (408)
                      .+    ...++.+.++|.+. ++.+|..|+.++.++.....  . +.  .++++.|.++|.+. ++.++.+|+.+|..++
T Consensus       139 ~~----~~l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~p--~-~v--~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~  207 (618)
T 1w63_A          139 MC----RDLAGEVEKLLKTS-NSYLRKKAALCAVHVIRKVP--E-LM--EMFLPATKNLLNEK-NHGVLHTSVVLLTEMC  207 (618)
T ss_dssp             HH----HHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHCG--G-GG--GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHC
T ss_pred             HH----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCh--H-HH--HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHH
Confidence            11    35578899999998 99999999999999986432  1 22  25788888999886 9999999999999999


Q ss_pred             cCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338          263 SSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT  326 (408)
Q Consensus       263 ~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~  326 (408)
                      .......... ...+|.|+.+|.+-..++.+   +..   .-....++..+...+.+|..++..
T Consensus       208 ~~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~---~~~---~~~~~~~~~~q~~il~~L~~l~~~  264 (618)
T 1w63_A          208 ERSPDMLAHF-RKLVPQLVRILKNLIMSGYS---PEH---DVSGISDPFLQVRILRLLRILGRN  264 (618)
T ss_dssp             CSHHHHHHHH-HTTHHHHHHHHHHHHHSCCC---TTT---CSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred             HhChHHHHHH-HHHHHHHHHHHHHHHcCCCC---ccc---cccCCCCChHHHHHHHHHHHhCCC
Confidence            8643221112 36788888887631000000   000   000023678888899999999864

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.59  E-value=0.002  Score=66.79  Aligned_cols=174  Identities=13%  Similarity=0.124  Sum_probs=119.9

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchH
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQ  178 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~  178 (408)
                      .+..+-+.+++.+.. +.+++..|-.+..-....      . -+....++++.+.+ ..+  .-.--.+..++.  .+.+
T Consensus        35 e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~------~-~~~~~vik~~~s~~~~~K--rl~Yl~~~~~~~--~~~e  103 (618)
T 1w63_A           35 ECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA------H-FGQLECLKLIASQKFTDK--RIGYLGAMLLLD--ERQD  103 (618)
T ss_dssp             HHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC------G-GGHHHHHHHHHSSSHHHH--HHHHHHHHHHCC--CCHH
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC------c-chHHHHHHHHcCCchHHH--HHHHHHHHHHhC--CCcH
Confidence            344555567766655 777887776654322111      1 34555678888766 333  444445556654  2322


Q ss_pred             HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHH
Q 036338          179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCL  258 (408)
Q Consensus       179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL  258 (408)
                        ...+      ++..|.+-|.++ ++..|..|+++|.++.. +    .+.  ...++.+.++|++. ++.+++.|+.++
T Consensus       104 --~~~l------~in~l~kDL~~~-n~~vr~lAL~~L~~i~~-~----~~~--~~l~~~l~~~L~~~-~~~VRk~A~~al  166 (618)
T 1w63_A          104 --VHLL------MTNCIKNDLNHS-TQFVQGLALCTLGCMGS-S----EMC--RDLAGEVEKLLKTS-NSYLRKKAALCA  166 (618)
T ss_dssp             --HHHH------HHHHHHHHHSCS-SSHHHHHHHHHHHHHCC-H----HHH--HHHHHHHHHHHHSC-CHHHHHHHHHHH
T ss_pred             --HHHH------HHHHHHHhcCCC-CHhHHHHHHHHHHhcCC-H----HHH--HHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence              1122      377888889988 99999999999999973 2    233  35789999999987 999999999999


Q ss_pred             HHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCH
Q 036338          259 ITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTK  327 (408)
Q Consensus       259 ~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~  327 (408)
                      .++......   +++ +.++.|..+|.++                     ++.++..|+.+|..++...
T Consensus       167 ~~l~~~~p~---~v~-~~~~~l~~lL~D~---------------------d~~V~~~Al~~L~~i~~~~  210 (618)
T 1w63_A          167 VHVIRKVPE---LME-MFLPATKNLLNEK---------------------NHGVLHTSVVLLTEMCERS  210 (618)
T ss_dssp             HHHHHHCGG---GGG-GGGGGTTTSTTCC---------------------CHHHHHHHHHHHHHHCCSH
T ss_pred             HHHHHHChH---HHH-HHHHHHHHHhCCC---------------------CHhHHHHHHHHHHHHHHhC
Confidence            999874321   222 6777788888643                     8899999999999998764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=97.44  E-value=0.028  Score=59.89  Aligned_cols=258  Identities=11%  Similarity=0.064  Sum_probs=154.9

Q ss_pred             HHHHHHHHHHHhcC--Chh-HHHHHHHHHHHhhhC-hhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccc
Q 036338           99 QDEVKDIIRVAISK--NED-FSENLTKIVAFAKES-DENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNK  173 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~--~~~-~~~Al~~L~~la~~~-~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~  173 (408)
                      ++-++.+++.+.+.  +.. +..++..|..++... ++.-....  +..++.+...+.++. +..+...|+.+|..+.. 
T Consensus       127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~-  203 (876)
T 1qgr_A          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE-  203 (876)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG-
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH-
Confidence            45678888888887  766 888999999988653 22111111  156777888887763 34455889999988764 


Q ss_pred             ccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcch--hhHHhhhcChHHHHHHhcccCCCHHHH
Q 036338          174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADS--KVKIAERDGLLAETVKSLSLDSDRRLI  251 (408)
Q Consensus       174 ~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~  251 (408)
                       .-.........  ....++.+...+.+. +.++|..++.+|..+......  ...+ . ..+++.++..+.+. +..++
T Consensus       204 -~~~~~~~~~~~--~~~il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~-~~l~~~~~~~~~~~-~~~v~  276 (876)
T 1qgr_A          204 -FTKANFDKESE--RHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSD-IDEVA  276 (876)
T ss_dssp             -GCHHHHTSHHH--HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHH-T-TTHHHHHHHHHTCS-SHHHH
T ss_pred             -HHHHHHHhHHH--HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhcCC-chHHH
Confidence             11111010000  123577777777777 889999999999998864322  1222 1 26788888888775 78899


Q ss_pred             HHHHHHHHHhccCcc---------------------hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCc
Q 036338          252 EASLSCLITISSSKR---------------------AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTV  310 (408)
Q Consensus       252 ~~A~~aL~~Ls~~~~---------------------n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (408)
                      ..|+.++.+++....                     +..+-.-...+|.++..|...    ..        +  ..+.+.
T Consensus       277 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~----~~--------d--~~~~~~  342 (876)
T 1qgr_A          277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ----DE--------N--DDDDDW  342 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC----CS--------S--CCTTCC
T ss_pred             HHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc----cc--------c--cccccc
Confidence            999999998875421                     000001134677888888642    00        0  002345


Q ss_pred             chHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH-------HHHHHHH-------h-----------cCcHHHHH
Q 036338          311 LITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK-------TAQEAVS-------S-----------SNVLTKIL  365 (408)
Q Consensus       311 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~-------~~~~~~~-------~-----------~g~~~~Ll  365 (408)
                      .++..|..+|..|+..-.  .      ..++.++..+..       ..++.++       .           ...++.++
T Consensus       343 ~~r~~a~~~l~~l~~~~~--~------~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~  414 (876)
T 1qgr_A          343 NPCKAAGVCLMLLATCCE--D------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI  414 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHG--G------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCc--H------hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            778888888888865321  1      123333333322       2222211       0           12355566


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          366 LLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       366 ~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      ..|. +..+.+|..|..+|..+..
T Consensus       415 ~~l~-d~~~~vr~~a~~~l~~~~~  437 (876)
T 1qgr_A          415 ELMK-DPSVVVRDTAAWTVGRICE  437 (876)
T ss_dssp             HHHT-CSSHHHHHHHHHHHHHHHH
T ss_pred             HHhC-CCCHHHHHHHHHHHHHHHH
Confidence            6664 4568889999888887776

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.39  E-value=0.00019  Score=50.42  Aligned_cols=48  Identities=19%  Similarity=0.276  Sum_probs=39.6

Q ss_pred             CcccccCccccCCCceecCCC--C---cccHhhHHHHHhc-CCCCCCCcccccC
Q 036338           12 SFFRCPISLDVMKSPVSLCTG--V---TYDRASIQRWLDS-GNNTCPATMQVLQ   59 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~~cg--h---~f~r~cI~~~~~~-~~~~CP~~~~~l~   59 (408)
                      +...|.||++-..+|.+.||.  +   .|=+.||.+|+.. ++.+||+|+.++.
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            445799999988889888865  4   7889999999975 5678999998764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.37  E-value=0.0021  Score=68.66  Aligned_cols=188  Identities=10%  Similarity=0.109  Sum_probs=122.9

Q ss_pred             HHHHHHHHHhcC-------Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcc
Q 036338          101 EVKDIIRVAISK-------NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILN  172 (408)
Q Consensus       101 ~i~~Lv~~L~s~-------~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~  172 (408)
                      -++.++..+...       +.. +..|...|..++...+   ..+..  ..++.+...+.+.+ .+..+.|+.+|..++.
T Consensus       325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~--~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~  398 (861)
T 2bpt_A          325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG---NHILE--PVLEFVEQNITADN-WRNREAAVMAFGSIMD  398 (861)
T ss_dssp             HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHH--HHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc---HhHHH--HHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence            455666666542       123 6678888888876422   12222  35666666666555 3345899999999986


Q ss_pred             cccch-HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh---hHHhhhcChHHHHHHhcccCCCH
Q 036338          173 KIEDQ-QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK---VKIAERDGLLAETVKSLSLDSDR  248 (408)
Q Consensus       173 ~~~~~-~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~---~~i~~~~g~i~~Lv~lL~~~~~~  248 (408)
                        ... ..+...+    ...++.|+..+.+. +..+|..++++|..++..-...   ....  ..+++.|++.|++  ++
T Consensus       399 --~~~~~~~~~~l----~~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~~--~~  467 (861)
T 2bpt_A          399 --GPDKVQRTYYV----HQALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQD--HP  467 (861)
T ss_dssp             --SSCHHHHHHHH----HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHTS--CH
T ss_pred             --CCCHHHHHHHH----HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhcc--Ch
Confidence              322 2223333    25788888888888 9999999999999998642211   1111  3578999999976  38


Q ss_pred             HHHHHHHHHHHHhccCcc-----hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q 036338          249 RLIEASLSCLITISSSKR-----AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEIL  323 (408)
Q Consensus       249 ~~~~~A~~aL~~Ls~~~~-----n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L  323 (408)
                      .++..|+++|.+++..-.     .-.... ...++.|+.++.+.                   +.+..++..++.+|..+
T Consensus       468 ~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~-------------------d~~~~vr~~a~~al~~l  527 (861)
T 2bpt_A          468 KVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRI-------------------DNEFNARASAFSALTTM  527 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCS-------------------CCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCc-------------------CcchHHHHHHHHHHHHH
Confidence            899999999999876311     110111 34577888888753                   23467888899999988


Q ss_pred             hC
Q 036338          324 ST  325 (408)
Q Consensus       324 ~~  325 (408)
                      +.
T Consensus       528 ~~  529 (861)
T 2bpt_A          528 VE  529 (861)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=97.29  E-value=0.0068  Score=64.71  Aligned_cols=193  Identities=13%  Similarity=0.069  Sum_probs=123.5

Q ss_pred             HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH--
Q 036338          102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ--  178 (408)
Q Consensus       102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~--  178 (408)
                      ++.+.+.+...+.+ +..++..|..++...+..-...... ..++.++..+.+.+ ..+...|+..+..++.  ....  
T Consensus       219 l~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~-~~v~~~al~~l~~l~~--~~~~~~  294 (876)
T 1qgr_A          219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP-ALFAITIEAMKSDI-DEVALQGIEFWSNVCD--EEMDLA  294 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTT-THHHHHHHHHTCSS-HHHHHHHHHHHHHHHH--HHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHhcCCc-hHHHHHHHHHHHHHHH--HHHhHh
Confidence            33344444445555 7788899988887654432222223 67888888776554 3344778777777764  1100  


Q ss_pred             ---H--H----------HHHHhccCcccHHHHHHHHhcC------CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHH
Q 036338          179 ---H--L----------MNLILKRDQDCLNSLLLVLKQQ------ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAE  237 (408)
Q Consensus       179 ---~--~----------~~~i~~~~~g~i~~Lv~lL~~~------~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~  237 (408)
                         .  .          ...+...-...++.++..|...      .+...|..|+.+|..++....  ..+.  ..+++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~--~~~l~~  370 (876)
T 1qgr_A          295 IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV--PHVLPF  370 (876)
T ss_dssp             HHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH--HHHHHH
T ss_pred             hhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhH--HHHHHH
Confidence               0  0          0000000023466777777531      156788999999999986533  1222  356788


Q ss_pred             HHHhcccCCCHHHHHHHHHHHHHhccCcc-h-HHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHH
Q 036338          238 TVKSLSLDSDRRLIEASLSCLITISSSKR-A-KTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEK  315 (408)
Q Consensus       238 Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n-~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (408)
                      +...+.+. +..++++|+.+|.+++.... . .... -..++|.|+..|.++                     +..++..
T Consensus       371 l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~---------------------~~~vr~~  427 (876)
T 1qgr_A          371 IKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP---------------------SVVVRDT  427 (876)
T ss_dssp             HHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCS---------------------SHHHHHH
T ss_pred             HHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCC---------------------CHHHHHH
Confidence            88888876 89999999999999998643 2 2222 245889999999754                     7889999


Q ss_pred             HHHHHHHHhC
Q 036338          316 ALRLVEILST  325 (408)
Q Consensus       316 a~~~L~~L~~  325 (408)
                      |+.+|.+++.
T Consensus       428 a~~~l~~~~~  437 (876)
T 1qgr_A          428 AAWTVGRICE  437 (876)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999985

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.24  E-value=0.0057  Score=55.10  Aligned_cols=146  Identities=16%  Similarity=0.132  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHh-cCChh-HHHHHHHHHHHhhhChh-hhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhccccc
Q 036338           99 QDEVKDIIRVAI-SKNED-FSENLTKIVAFAKESDE-NKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIE  175 (408)
Q Consensus        99 ~~~i~~Lv~~L~-s~~~~-~~~Al~~L~~la~~~~~-~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~  175 (408)
                      ..-++.|...+. ..+.. +..|+..|..++..-.. ....+.   -.+|.|+..+.+.. ..+.+.|..+|..+..  .
T Consensus        55 ~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~---~ilp~ll~~l~d~~-~~vr~~a~~aL~~~~~--~  128 (242)
T 2qk2_A           55 GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS---ACVPSLLEKFKEKK-PNVVTALREAIDAIYA--S  128 (242)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH---HHHHHHHHGGGCCC-HHHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHcCCC-HHHHHHHHHHHHHHHH--c
Confidence            455677777884 77777 88899999999864221 112222   46888888888765 3344888888888764  1


Q ss_pred             chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc--c--hhhHHhhhcChHHHHHHhcccCCCHHHH
Q 036338          176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA--D--SKVKIAERDGLLAETVKSLSLDSDRRLI  251 (408)
Q Consensus       176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~--~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  251 (408)
                      . . +.        ..++.|...|++. +..+|..++..|..+....  +  ....+   ...+|.|+.+|.+. +.++|
T Consensus       129 ~-~-~~--------~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~~~~~l---~~l~p~l~~~l~D~-~~~VR  193 (242)
T 2qk2_A          129 T-S-LE--------AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLL---KLLTTSLVKTLNEP-DPTVR  193 (242)
T ss_dssp             S-C-HH--------HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGCCHHHH---HHHHHHHHHHHTSS-CHHHH
T ss_pred             C-C-HH--------HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCccHHHH---HHHHHHHHHHhcCC-ChHHH
Confidence            1 1 11        2467788889988 9999999999999965442  2  12222   35799999999886 89999


Q ss_pred             HHHHHHHHHhccCc
Q 036338          252 EASLSCLITISSSK  265 (408)
Q Consensus       252 ~~A~~aL~~Ls~~~  265 (408)
                      .+|..+|..++..-
T Consensus       194 ~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          194 DSSAEALGTLIKLM  207 (242)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999988643

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.24  E-value=0.052  Score=46.74  Aligned_cols=182  Identities=15%  Similarity=0.239  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHhcCCh-hHHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNE-DFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~-~~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      .+-+..+++.|...-= -|.+|+..|..+++..++..+-+++      .|+.+++.+.....-.+...+++.++.  -.+
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~------kL~vm~~ksEaIpltqeIa~a~G~la~--i~P  102 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK------KLFSLLKKSEAIPLTQEIAKAFGQMAK--EKP  102 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHH------HHHHHHHHCCSHHHHHHHHHHHHHHHH--HCH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHH------HHHHHHhhcccCchHHHHHHHHhHHHH--hCH
Confidence            5556667776654432 2889999999999887766555444      367776655522222556677777765  222


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                          +.+    .+.+|.+..-.+-| ++..|.+...+|..++....  ..+   .+++.-+..+|.++ +..-+-.|+..
T Consensus       103 ----e~v----~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP--~l~---~~v~rdi~smltsk-d~~Dkl~aLnF  167 (253)
T 2db0_A          103 ----ELV----KSMIPVLFANYRIG-DEKTKINVSYALEEIAKANP--MLM---ASIVRDFMSMLSSK-NREDKLTALNF  167 (253)
T ss_dssp             ----HHH----HHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCH--HHH---HHHHHHHHHHTSCS-SHHHHHHHHHH
T ss_pred             ----HHH----HhhHHHHHHHHhcC-CccceecHHHHHHHHHHhCh--HHH---HHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence                233    25677787777889 99999999999999986432  112   34677888999876 76666666666


Q ss_pred             HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HH
Q 036338          258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQ  328 (408)
Q Consensus       258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~  328 (408)
                      +..+..   |..+-+.. -+|.|..||.+.                     +..+...|+.+|.+|+.. +.
T Consensus       168 i~alGe---n~~~yv~P-fLprL~aLL~D~---------------------deiVRaSaVEtL~~lA~~npk  214 (253)
T 2db0_A          168 IEAMGE---NSFKYVNP-FLPRIINLLHDG---------------------DEIVRASAVEALVHLATLNDK  214 (253)
T ss_dssp             HHTCCT---TTHHHHGG-GHHHHHGGGGCS---------------------SHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHhc---cCccccCc-chHHHHHHHcCc---------------------chhhhHHHHHHHHHHHHcCHH
Confidence            666554   44444433 679999999854                     889999999999999974 54

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=97.23  E-value=5.8e-05  Score=70.97  Aligned_cols=46  Identities=17%  Similarity=0.430  Sum_probs=37.2

Q ss_pred             ccccCccccCCC----cee----cCCCCcccHhhHHHHHhcC-C---------CCCCCcccccC
Q 036338           14 FRCPISLDVMKS----PVS----LCTGVTYDRASIQRWLDSG-N---------NTCPATMQVLQ   59 (408)
Q Consensus        14 ~~Cpi~~~~~~d----Pv~----~~cgh~f~r~cI~~~~~~~-~---------~~CP~~~~~l~   59 (408)
                      .-|+||..++.+    |-.    ..|||.|-..||.+|+.+. .         ..||.|+++++
T Consensus       309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            469999999998    543    3699999999999999752 1         46999998764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.15  E-value=0.008  Score=53.72  Aligned_cols=146  Identities=16%  Similarity=0.160  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      ...++.+++.+++.+.. ..+|+++|..+..+.+-....+...   +..|.++++++.+. ..++|+..|..+..  -. 
T Consensus        74 e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl---~~aL~dlik~~~~i-l~~eaae~Lgklkv--~~-  146 (265)
T 3b2a_A           74 ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKA---AKTLVSLLESPDDM-MRIETIDVLSKLQP--LE-  146 (265)
T ss_dssp             HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHH---HHHHHHHTTSCCHH-HHHHHHHHHHHCCB--SC-
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHHHhcCCCch-HHHHHHHHhCcCCc--cc-
Confidence            44566777777777665 7889999999988876666666644   66788888877632 34888888888743  12 


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                      .         ..+.+..+.+++.+. +.++|..|..++.+++...+.+..+   .+++..+-.+|++. |+.+++-|+.+
T Consensus       147 ~---------~~~V~~~l~sLl~Sk-d~~vK~agl~~L~eia~~S~D~~i~---~~I~~eI~elL~~e-D~~l~e~aLd~  212 (265)
T 3b2a_A          147 D---------SKLVRTYINELVVSP-DLYTKVAGFCLFLNMLNSSADSGHL---TLILDEIPSLLQND-NEFIVELALDV  212 (265)
T ss_dssp             C---------CHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHGGGCSSCCCG---GGTTTTHHHHHTCS-CHHHHHHHHHH
T ss_pred             c---------hHHHHHHHHHHHhCC-ChhHHHHHHHHHHHhhcccCCHHHH---HHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence            1         234466788888888 9999999999999999765544443   23556677888887 99999999999


Q ss_pred             HHHhccCc
Q 036338          258 LITISSSK  265 (408)
Q Consensus       258 L~~Ls~~~  265 (408)
                      |..+.+.+
T Consensus       213 Le~ils~p  220 (265)
T 3b2a_A          213 LEKALSFP  220 (265)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHHcCc
Confidence            99998865

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.12  E-value=0.011  Score=55.70  Aligned_cols=163  Identities=12%  Similarity=0.131  Sum_probs=117.8

Q ss_pred             HHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh
Q 036338          146 MLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK  225 (408)
Q Consensus       146 ~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~  225 (408)
                      .+++-|.+.+ .+.+..++.-|..+..  .|..-..+.|   ..+++..|++....+ +...+.++..++.+|-...+..
T Consensus       122 ~iiekL~~~~-~~~lr~aLfsLk~~~q--~D~~Fa~EFI---~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm  194 (339)
T 3dad_A          122 AILEKLYSSS-GPELRRSLFSLKQIFQ--EDKDLVPEFV---HSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGM  194 (339)
T ss_dssp             HHHHHHHHCC-HHHHHHHHHHHHHHHH--TCTTHHHHHH---HTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHhcCC-cHHHHHHHHHHHHHhh--cchHHHHHHH---HhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccc
Confidence            4555566554 2234777777776332  2444446677   678899999999998 9999999999999998887777


Q ss_pred             hHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hHHHHHhc-C---------cHHHHHHHhccCCCCCCCC
Q 036338          226 VKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR-AKTKLINH-K---------LITELGKLITDGHNGNGSG  294 (408)
Q Consensus       226 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~-G---------~i~~Lv~lL~~~~~~~~~~  294 (408)
                      ..+..+..+|.-|+.++.+. +..+.+.|+..|..++...+ |...+.++ .         -...|+.+|.+.       
T Consensus       195 ~gvvs~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~-------  266 (339)
T 3dad_A          195 LGVVAHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEK-------  266 (339)
T ss_dssp             HHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTT-------
T ss_pred             cchhCCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhcc-------
Confidence            66665577999999999975 89999999999999988765 44333322 1         277999999742       


Q ss_pred             CCCCCCCCCCCCCCCcchHHHHHHHHHHHhC---CHHHHHHHH
Q 036338          295 NGNGNGNGNGSGNGTVLITEKALRLVEILST---TKQGRMEIC  334 (408)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~---~~~~~~~~~  334 (408)
                                 .+.+..++.+|+..+..+-.   +++.+..++
T Consensus       267 -----------~~~D~elq~~amtLIN~lL~~apd~d~~~di~  298 (339)
T 3dad_A          267 -----------NGADPELLVYTVTLINKTLAALPDQDSFYDVT  298 (339)
T ss_dssp             -----------TSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             -----------CCCCHHHHHHHHHHHHHHHhcCCChhHHHHHH
Confidence                       02478999998888777643   234454444

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=97.11  E-value=0.0002  Score=55.96  Aligned_cols=34  Identities=12%  Similarity=0.142  Sum_probs=29.6

Q ss_pred             CcccccCccc-cCCCcee--cCCCCcccHhhHHHHHh
Q 036338           12 SFFRCPISLD-VMKSPVS--LCTGVTYDRASIQRWLD   45 (408)
Q Consensus        12 ~~~~Cpi~~~-~~~dPv~--~~cgh~f~r~cI~~~~~   45 (408)
                      +++.|+||.+ ++.+||+  +.|||+||+.|++.|+.
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            4678999996 5899999  89999999999999544

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=96.87  E-value=0.11  Score=53.73  Aligned_cols=193  Identities=13%  Similarity=0.194  Sum_probs=118.0

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhh----cCc------------chhhHHHH
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILS----NVN------------DVNMLKQV  163 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~----s~~------------~~~~~e~A  163 (408)
                      -++.+.+.|...++. +..|+..|..++..++....      ..+|.+++.|.    ...            ++=.+-..
T Consensus       188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~------~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~i  261 (621)
T 2vgl_A          188 WTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK------TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKL  261 (621)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT------THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHH
T ss_pred             HHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH------HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHH
Confidence            345566677777777 88888999998887665311      34555554443    211            12234556


Q ss_pred             HHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCC--------Ch--HHHHHHHHHHHHhhcCcchhhHHhhhcC
Q 036338          164 IRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQE--------SV--DSRIESLRLLEFIAGDADSKVKIAERDG  233 (408)
Q Consensus       164 ~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~--------~~--~~~~~Aa~~L~~La~~~~~~~~i~~~~g  233 (408)
                      +..|..++.  .++...+..+.    ..+..++..+....        +.  .+.-.++.++..+...+    .+.  ..
T Consensus       262 l~ll~~~~~--~~d~~~~~~l~----~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~--~~  329 (621)
T 2vgl_A          262 LRLLQCYPP--PEDPAVRGRLT----ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEP----NLL--VR  329 (621)
T ss_dssp             HHHGGGSSS--CSSHHHHHHHH----HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHH--HH
T ss_pred             HHHHHHhCC--CCCHHHHHHHH----HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcH----HHH--HH
Confidence            667766664  23222233331    23444443322110        22  55666777777775322    222  23


Q ss_pred             hHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhc-cCCCCCCCCCCCCCCCCCCCCCCCcch
Q 036338          234 LLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLIT-DGHNGNGSGNGNGNGNGNGSGNGTVLI  312 (408)
Q Consensus       234 ~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (408)
                      ++..|.++|.+. ++.++-.|+.+|..++...... .++ ....+.++..|. ++                     +..+
T Consensus       330 ~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~~-~~~-~~~~~~i~~~L~~d~---------------------d~~I  385 (621)
T 2vgl_A          330 ACNQLGQFLQHR-ETNLRYLALESMCTLASSEFSH-EAV-KTHIETVINALKTER---------------------DVSV  385 (621)
T ss_dssp             HHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTTH-HHH-HTTHHHHHHHHTTCC---------------------CHHH
T ss_pred             HHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCcH-HHH-HHHHHHHHHHhccCC---------------------CHhH
Confidence            678899999876 8899999999999998765332 223 235677788887 53                     7889


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHhh
Q 036338          313 TEKALRLVEILSTTKQGRMEICQD  336 (408)
Q Consensus       313 ~~~a~~~L~~L~~~~~~~~~~~~~  336 (408)
                      +..|+.+|..|+. +.|...++.+
T Consensus       386 r~~aL~lL~~l~~-~~Nv~~Iv~e  408 (621)
T 2vgl_A          386 RQRAVDLLYAMCD-RSNAQQIVAE  408 (621)
T ss_dssp             HHHHHHHHHHHCC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-hhhHHHHHHH
Confidence            9999999999985 5666666543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.018  Score=52.49  Aligned_cols=153  Identities=8%  Similarity=0.089  Sum_probs=102.1

Q ss_pred             HHHHHHHHHH-hcCChh-HHHHHHHHHHHhhhC--hhhh-hhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccc
Q 036338          100 DEVKDIIRVA-ISKNED-FSENLTKIVAFAKES--DENK-TFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKI  174 (408)
Q Consensus       100 ~~i~~Lv~~L-~s~~~~-~~~Al~~L~~la~~~--~~~r-~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~  174 (408)
                      +.+..|.+.+ +..+.. +..|+..|..++.+-  +... .+..   -.+|.++..+++.. ..+++.+..+|..++.  
T Consensus        60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~---~llp~ll~~l~dkk-~~V~~aa~~al~~i~~--  133 (249)
T 2qk1_A           60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS---LVFTPLLDRTKEKK-PSVIEAIRKALLTICK--  133 (249)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH---HHHHHHHHGGGCCC-HHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH---HHHHHHHHHHcCCC-HHHHHHHHHHHHHHHH--
Confidence            4566777778 566666 888999999998542  1222 2222   35888888887655 2344666667766653  


Q ss_pred             cchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh-hHH-hhh-cChHHHHHHhcccCCCHHHH
Q 036338          175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK-VKI-AER-DGLLAETVKSLSLDSDRRLI  251 (408)
Q Consensus       175 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~-~~i-~~~-~g~i~~Lv~lL~~~~~~~~~  251 (408)
                      .-++   ......-...++.|+..|++. +..+|+.++..|..+....... ..+ -.- ...+|.|.+++.+. ++++|
T Consensus       134 ~~~~---~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR  208 (249)
T 2qk1_A          134 YYDP---LASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIR  208 (249)
T ss_dssp             HSCT---TCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHH
T ss_pred             Hccc---cccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC-CHHHH
Confidence            1110   000000014578888889998 9999999999999888654321 222 122 46899999999886 99999


Q ss_pred             HHHHHHHHHhcc
Q 036338          252 EASLSCLITISS  263 (408)
Q Consensus       252 ~~A~~aL~~Ls~  263 (408)
                      .+|..+|..++.
T Consensus       209 ~aA~~~l~~i~~  220 (249)
T 2qk1_A          209 TIGFESFAILIK  220 (249)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999875

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.78  E-value=0.041  Score=59.12  Aligned_cols=98  Identities=17%  Similarity=0.158  Sum_probs=72.9

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHH
Q 036338          192 LNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKL  271 (408)
Q Consensus       192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~  271 (408)
                      |+.|+..+.+..+..+|..|+..|..++..++         ..++.++.+|.+..++.+|..|+.||..++.+..+..  
T Consensus       579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~--  647 (963)
T 4ady_A          579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS--  647 (963)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH--
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH--
Confidence            55566666544377888888888888775542         2467788866554589999999999999987665432  


Q ss_pred             HhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          272 INHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       272 ~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                          +|+.|..++.+                     .+..+...|+-+|..+..
T Consensus       648 ----aid~L~~L~~D---------------------~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          648 ----AIDVLDPLTKD---------------------PVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             ----HHHHHHHHHTC---------------------SSHHHHHHHHHHHHHHST
T ss_pred             ----HHHHHHHHccC---------------------CCHHHHHHHHHHHHHHhc
Confidence                56677777764                     488999999999999864

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=96.71  E-value=0.018  Score=64.33  Aligned_cols=172  Identities=13%  Similarity=0.120  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      ...++.+++.|.+.+.. |..|+..|..++...+.  ..+.   .+++.|+..|.+++ .+++..|..+|..++......
T Consensus        47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~~---~i~~~Ll~~l~d~~-~~vR~~a~~~L~~i~~~l~~~  120 (1230)
T 1u6g_C           47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQVE---TIVDTLCTNMLSDK-EQLRDISSIGLKTVIGELPPA  120 (1230)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHHH---HHHHHHHHHTTCSS-SHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHHH---HHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCCc
Confidence            34577788888877777 88899999999865433  1111   45677888877655 233477777887776421111


Q ss_pred             H---HHHHHHhccCcccHHHHHHHHh-cCCChHHHHHHHHHHHHhhcCcch-hhHHhhhcChHHHHHHhcccCCCHHHHH
Q 036338          178 Q---HLMNLILKRDQDCLNSLLLVLK-QQESVDSRIESLRLLEFIAGDADS-KVKIAERDGLLAETVKSLSLDSDRRLIE  252 (408)
Q Consensus       178 ~---~~~~~i~~~~~g~i~~Lv~lL~-~~~~~~~~~~Aa~~L~~La~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  252 (408)
                      .   ......   -...+|.|+..+. +. +...|..|..+|..++..... -... . ...++.|+..|.++ ++.+++
T Consensus       121 ~~~~~~~~~~---~~~llp~L~~~l~~~~-~~~~~~~al~~l~~~~~~~~~~l~~~-~-~~ll~~l~~~L~~~-~~~vR~  193 (1230)
T 1u6g_C          121 SSGSALAANV---CKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNF-H-PSILTCLLPQLTSP-RLAVRK  193 (1230)
T ss_dssp             ---CCTHHHH---HHHHHHHHHHHHSCCS-CHHHHHHHHHHHHHHHHHTCSSCTTT-H-HHHHHHHGGGGGCS-SHHHHH
T ss_pred             ccccchHHHH---HHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhHhHHHHH-H-HHHHHHHHHHHcCC-cHHHHH
Confidence            0   000011   2356899999998 46 889999999999998853211 1111 1 34788888889886 889999


Q ss_pred             HHHHHHHHhccCcchHHHHHhcCcHHHHHHHhcc
Q 036338          253 ASLSCLITISSSKRAKTKLINHKLITELGKLITD  286 (408)
Q Consensus       253 ~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~  286 (408)
                      .|+.+|..++......  + -...++.|+..|..
T Consensus       194 ~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~  224 (1230)
T 1u6g_C          194 RTIIALGHLVMSCGNI--V-FVDLIEHLLSELSK  224 (1230)
T ss_dssp             HHHHHHHHHTTTC-------CTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhcc
Confidence            9999999998764432  2 23468888888875

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.00099  Score=63.57  Aligned_cols=64  Identities=17%  Similarity=0.207  Sum_probs=52.5

Q ss_pred             CcccccCccccCCCceec-CCCCc--ccHhhHHHHHhc-CCCCCCCcccccCCCCCcccHHHHHHHHH
Q 036338           12 SFFRCPISLDVMKSPVSL-CTGVT--YDRASIQRWLDS-GNNTCPATMQVLQSKEFVPNRTLQRLIQI   75 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~-~cgh~--f~r~cI~~~~~~-~~~~CP~~~~~l~~~~l~~n~~l~~~I~~   75 (408)
                      -.+.|||+...|..|+-- .|.|.  |+...+.++... +...||+|++.+...+|..+..+.+.+..
T Consensus       248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~  315 (371)
T 3i2d_A          248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN  315 (371)
T ss_dssp             EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred             EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence            348899999999999976 69998  888877776543 56789999999988999999888776543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.56  E-value=0.1  Score=56.07  Aligned_cols=102  Identities=9%  Similarity=0.075  Sum_probs=70.6

Q ss_pred             cccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchH
Q 036338          189 QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAK  268 (408)
Q Consensus       189 ~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~  268 (408)
                      ...++.+++.|....++.+|..++.++.--.....+       ..+|..|+..+.+..+..+++.|+.+|..+.....  
T Consensus       540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--  610 (963)
T 4ady_A          540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--  610 (963)
T ss_dssp             GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--
Confidence            345677788887543777777777766543333322       23456666666554477899999999998776543  


Q ss_pred             HHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          269 TKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       269 ~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                            ..++.++.+|..                    ..++.++..|..+|..++.
T Consensus       611 ------e~v~rlv~~L~~--------------------~~d~~VR~gAalALGli~a  641 (963)
T 4ady_A          611 ------TTVPRIVQLLSK--------------------SHNAHVRCGTAFALGIACA  641 (963)
T ss_dssp             ------SSHHHHTTTGGG--------------------CSCHHHHHHHHHHHHHHTS
T ss_pred             ------HHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHhcc
Confidence                  357888887764                    3478999999999999865

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.52  E-value=0.058  Score=48.77  Aligned_cols=150  Identities=19%  Similarity=0.288  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-c---hhhHHHHHHHHHHhcccccchHHHHHHHhccCcccH
Q 036338          117 SENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-D---VNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCL  192 (408)
Q Consensus       117 ~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~---~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i  192 (408)
                      .+|+.-|..+|. +++.|..+.++ +..-.|-.+|...+ .   +-..-.++++++.|.+  .|+..+-..+.  +..+|
T Consensus        74 cnaLaLlQcvAs-hpetr~~Fl~a-~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK--~dd~eVi~fLL--~tEii  147 (268)
T 2fv2_A           74 CNALALLQCVAS-HPETRSAFLAA-HIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVK--TDEQEVINFLL--TTEII  147 (268)
T ss_dssp             HHHHHHHHHHHH-CTTTHHHHHHT-TGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGG--GCCHHHHHHHH--HTTHH
T ss_pred             HHHHHHHHHHHc-CcchhhHHHHc-cchHHhhhhhccccCCCcchhhhhhHHHHHHHHhc--cCcHHHHHHHH--hhhHH
Confidence            456666676665 78999999999 88888888887665 1   1233567888888887  44444455555  78899


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcC-------hHHHHHHhcccCCCHHHHHHHHHHHHHhccCc
Q 036338          193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDG-------LLAETVKSLSLDSDRRLIEASLSCLITISSSK  265 (408)
Q Consensus       193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g-------~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~  265 (408)
                      |..++.+..| +.-.|.-|..++..+-.++.+-..+..+..       ++..+|.-+....+++..+...++-..|+.++
T Consensus       148 plCLrime~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~  226 (268)
T 2fv2_A          148 PLCLRIMESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP  226 (268)
T ss_dssp             HHHHHHHHHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHhhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence            9999999999 999999999999999887766655543332       33333333333348999999999999999999


Q ss_pred             chHHHHHh
Q 036338          266 RAKTKLIN  273 (408)
Q Consensus       266 ~n~~~~~~  273 (408)
                      ..|..+..
T Consensus       227 rar~aL~~  234 (268)
T 2fv2_A          227 RAREALRQ  234 (268)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877663

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=96.38  E-value=0.37  Score=47.65  Aligned_cols=200  Identities=16%  Similarity=0.157  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHhcCC-hh-HHHHHHHHHHHhhhCh---hhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccc
Q 036338          100 DEVKDIIRVAISKN-ED-FSENLTKIVAFAKESD---ENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKI  174 (408)
Q Consensus       100 ~~i~~Lv~~L~s~~-~~-~~~Al~~L~~la~~~~---~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~  174 (408)
                      ..+..++..|+... .+ ....+.-+..+..+++   ..-..+.+.+.....+.......++.-.+..+..++..++...
T Consensus        77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~  156 (480)
T 1ho8_A           77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  156 (480)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence            45677888888654 44 6667777777777665   3333444442333333332222222222344444444443200


Q ss_pred             cchHHHHHHHhccCcccHH--HHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcC-hHHHHHHhccc-------
Q 036338          175 EDQQHLMNLILKRDQDCLN--SLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDG-LLAETVKSLSL-------  244 (408)
Q Consensus       175 ~~~~~~~~~i~~~~~g~i~--~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g-~i~~Lv~lL~~-------  244 (408)
                      ..++   +.+    ...+.  .++..|.+..+...+.-++..|..|...++.|..+....| .+++++++++.       
T Consensus       157 ~~~~---~~l----~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~  229 (480)
T 1ho8_A          157 LHNV---KLV----EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLA  229 (480)
T ss_dssp             TCCH---HHH----HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred             CccH---hHH----HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccc
Confidence            1111   111    12233  4556666632456666799999999999999999875233 57888766541       


Q ss_pred             ---------CCCHHHHHHHHHHHHHhccCcchHHHHHhcCcH--HHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchH
Q 036338          245 ---------DSDRRLIEASLSCLITISSSKRAKTKLINHKLI--TELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLIT  313 (408)
Q Consensus       245 ---------~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i--~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
                               +...+.+=.++-++|-|+..++....+...+.+  +.|++.++.                    .....+.
T Consensus       230 ~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~--------------------s~KEKvv  289 (480)
T 1ho8_A          230 TRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKI--------------------TIKEKVS  289 (480)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHH--------------------CCSHHHH
T ss_pred             cccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHh--------------------hccchhH
Confidence                     113466777899999999998877888777754  778888876                    3478999


Q ss_pred             HHHHHHHHHHhCC
Q 036338          314 EKALRLVEILSTT  326 (408)
Q Consensus       314 ~~a~~~L~~L~~~  326 (408)
                      ..++++|.||...
T Consensus       290 Rv~la~l~Nll~~  302 (480)
T 1ho8_A          290 RLCISIILQCCST  302 (480)
T ss_dssp             HHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999999874

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.25  E-value=0.19  Score=54.38  Aligned_cols=247  Identities=12%  Similarity=0.128  Sum_probs=157.4

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH  179 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~  179 (408)
                      .+..+++.+..++.+ +..++..|..+...+..  ...... +.+..|.+.+....+.   |.|+.++..|+........
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~   88 (986)
T 2iw3_A           15 VLEELFQKLSVATADNRHEIASEVASFLNGNII--EHDVPE-HFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPS   88 (986)
T ss_dssp             HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCS--SSSCCH-HHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTT
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHhcccc--ccccch-hHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCC
Confidence            345566666665544 77888888888664322  123334 6777777777654422   8888888888741111111


Q ss_pred             HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338          180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI  259 (408)
Q Consensus       180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~  259 (408)
                      ....++    +.++.++..+... ...+|..|..++..+...-. ...+   ..++|.|+..|++...=+.+..|+.+|.
T Consensus        89 ~e~~~~----~~~~~~~~~~~dk-~~~v~~aa~~~~~~~~~~~~-~~a~---~~~~~~~~~~~~~~~kw~~k~~~l~~~~  159 (986)
T 2iw3_A           89 VEPYIV----QLVPAICTNAGNK-DKEIQSVASETLISIVNAVN-PVAI---KALLPHLTNAIVETNKWQEKIAILAAFS  159 (986)
T ss_dssp             THHHHH----TTHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSC-GGGH---HHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             cccchH----HHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhCC-HHHH---HHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            122332    4677777777666 67888888878777754321 1112   2468999999976534589999999999


Q ss_pred             HhccCcchHHHHH--hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhc
Q 036338          260 TISSSKRAKTKLI--NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDA  337 (408)
Q Consensus       260 ~Ls~~~~n~~~~~--~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~  337 (408)
                      .|+....  ..+.  =...||.+-+.+.+                     ..++++..|..++..+|..=+|+. +   .
T Consensus       160 ~~~~~~~--~~~~~~~~~~~p~~~~~~~d---------------------~k~~v~~~~~~~~~~~~~~~~n~d-~---~  212 (986)
T 2iw3_A          160 AMVDAAK--DQVALRMPELIPVLSETMWD---------------------TKKEVKAAATAAMTKATETVDNKD-I---E  212 (986)
T ss_dssp             HHHHHSH--HHHHHHHHHHHHHHHHHTTC---------------------SSHHHHHHHHHHHHHHGGGCCCTT-T---G
T ss_pred             HHHHHhH--HHHHHhccchhcchHhhccc---------------------CcHHHHHHHHHHHHHHHhcCCCcc-h---h
Confidence            9987542  3333  35788888888864                     378999999999999987444443 1   2


Q ss_pred             CchHHHHHHHHH--HHHHHHH-----------hcCcHHHHHHHHh---hcCCHHHHHHHHHHHHHHhh
Q 036338          338 ALLNGVVQKMLK--TAQEAVS-----------SSNVLTKILLLMQ---SNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       338 g~i~~lv~~l~~--~~~~~~~-----------~~g~~~~Ll~ll~---~~~~~~~k~~A~~lL~~l~~  389 (408)
                      .-||.||+.|.+  ++-+.+-           .+-.+..++-+|.   ...+..+|+++..+...+.+
T Consensus       213 ~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~  280 (986)
T 2iw3_A          213 RFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCK  280 (986)
T ss_dssp             GGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhh
Confidence            458888887766  3333321           1222333333332   23466688999999988877

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=96.25  E-value=0.0025  Score=60.63  Aligned_cols=63  Identities=11%  Similarity=0.212  Sum_probs=52.4

Q ss_pred             CcccccCccccCCCceec-CCCCc--ccHhhHHHHHhc-CCCCCCCcccccCCCCCcccHHHHHHHH
Q 036338           12 SFFRCPISLDVMKSPVSL-CTGVT--YDRASIQRWLDS-GNNTCPATMQVLQSKEFVPNRTLQRLIQ   74 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~-~cgh~--f~r~cI~~~~~~-~~~~CP~~~~~l~~~~l~~n~~l~~~I~   74 (408)
                      -.+.|||+...|+.|+-- .|.|.  |+...+.++... +...||+|++.+...+|..+..+.+.+.
T Consensus       214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~  280 (360)
T 4fo9_A          214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN  280 (360)
T ss_dssp             EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred             EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence            357899999999999976 69998  888887776554 4678999999998889999888877654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=96.24  E-value=0.1  Score=54.00  Aligned_cols=173  Identities=14%  Similarity=0.130  Sum_probs=118.8

Q ss_pred             HHHHHHHHHhcC---Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccccc
Q 036338          101 EVKDIIRVAISK---NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIE  175 (408)
Q Consensus       101 ~i~~Lv~~L~s~---~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~  175 (408)
                      ++..+-+.+++.   +.. +.+++..|-.+..-..       +.+.+.+..++++.+.+ ..+  .-+--.+..++.  .
T Consensus        36 E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~-------d~s~~~~~vvkl~~s~~~~~K--rl~YL~l~~~~~--~  104 (621)
T 2vgl_A           36 ELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGH-------DIDFGHMEAVNLLSSNRYTEK--QIGYLFISVLVN--S  104 (621)
T ss_dssp             HHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSC-------CCCSCHHHHHHGGGCSCHHHH--HHHHHHHHHSCC--C
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC-------CCchhHHHHHHHhcCCCHHHH--HHHHHHHHHHcc--C
Confidence            344555566632   344 7777777666543222       12245667788888776 333  555556666665  3


Q ss_pred             chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhc--ccCCCHHHHHH
Q 036338          176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSL--SLDSDRRLIEA  253 (408)
Q Consensus       176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~~~~~~  253 (408)
                      +.+.  ..+      ++..+.+=|.++ ++-.|..|..+|.++.. +    .+.+  ..++++.++|  .+. ++-+++.
T Consensus       105 ~~e~--~~L------~iN~l~kDl~~~-n~~ir~lALr~L~~i~~-~----e~~~--~l~~~v~~~l~~~d~-~~~VRK~  167 (621)
T 2vgl_A          105 NSEL--IRL------INNAIKNDLASR-NPTFMGLALHCIANVGS-R----EMAE--AFAGEIPKILVAGDT-MDSVKQS  167 (621)
T ss_dssp             CHHH--HHH------HHHHHHHHHHSC-CHHHHHHHHHHHHHHCC-H----HHHH--HHTTHHHHHHHCSSS-CHHHHHH
T ss_pred             CcHH--HHH------HHHHHHHhcCCC-CHHHHHHHHHHhhccCC-H----HHHH--HHHHHHHHHHhCCCC-CHHHHHH
Confidence            3331  222      366777778888 99999999999999863 2    2443  4678899999  776 9999999


Q ss_pred             HHHHHHHhccCcchHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          254 SLSCLITISSSKRAKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       254 A~~aL~~Ls~~~~n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      |+-+++.+....+   .++. .+.++.|.++|.++                     ++.++..|+.+|..++.
T Consensus       168 A~~al~kl~~~~p---~~~~~~~~~~~l~~lL~d~---------------------d~~V~~~a~~~l~~i~~  216 (621)
T 2vgl_A          168 AALCLLRLYRTSP---DLVPMGDWTSRVVHLLNDQ---------------------HLGVVTAATSLITTLAQ  216 (621)
T ss_dssp             HHHHHHHHHHHCG---GGCCCCSCHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCh---hhcCchhHHHHHHHHhCCC---------------------CccHHHHHHHHHHHHHH
Confidence            9999999987433   2232 58899999999754                     88999999999999875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.15  E-value=0.25  Score=53.48  Aligned_cols=190  Identities=9%  Similarity=0.110  Sum_probs=119.1

Q ss_pred             HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHH
Q 036338          102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHL  180 (408)
Q Consensus       102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~  180 (408)
                      ++.++......... |..|-.++..+...-+.  ..+  . .++|.|+..|++...=+....|+.+|..|+.  ....++
T Consensus        97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~--~a~--~-~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~--~~~~~~  169 (986)
T 2iw3_A           97 VPAICTNAGNKDKEIQSVASETLISIVNAVNP--VAI--K-ALLPHLTNAIVETNKWQEKIAILAAFSAMVD--AAKDQV  169 (986)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG--GGH--H-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HSHHHH
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH--HHH--H-HHHHHHHHHhccccchHHHHHHHHHHHHHHH--HhHHHH
Confidence            34445544444445 66666666666554222  233  2 6789999999776533344888999988875  222221


Q ss_pred             HHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHH
Q 036338          181 MNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLIT  260 (408)
Q Consensus       181 ~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~  260 (408)
                      -..    =...||.+...+-.. ..+++..|..++..+|..-+|+..    ...||.||+.+.++ + + .-.+...|..
T Consensus       170 ~~~----~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~----~~~~~~~~~~~~~p-~-~-~~~~~~~l~~  237 (986)
T 2iw3_A          170 ALR----MPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI----ERFIPSLIQCIADP-T-E-VPETVHLLGA  237 (986)
T ss_dssp             HHH----HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT----GGGHHHHHHHHHCT-T-H-HHHHHHHHTT
T ss_pred             HHh----ccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhcCh-h-h-hHHHHHHhhc
Confidence            111    246778888777777 889999999999999987777665    35799999999876 3 2 2333444433


Q ss_pred             hccCcc--hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC---CHHHHHHHH
Q 036338          261 ISSSKR--AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST---TKQGRMEIC  334 (408)
Q Consensus       261 Ls~~~~--n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~---~~~~~~~~~  334 (408)
                      -....+  .....+   .+|.|..-|...                     ...++.+++-+..||+.   +|..-+.+.
T Consensus       238 ~tfv~~v~~~~l~~---~~p~l~r~l~~~---------------------~~~~~r~~~~~~~n~~~lv~~~~~~~~f~  292 (986)
T 2iw3_A          238 TTFVAEVTPATLSI---MVPLLSRGLNER---------------------ETGIKRKSAVIIDNMCKLVEDPQVIAPFL  292 (986)
T ss_dssp             CCCCSCCCHHHHHH---HHHHHHHHHTSS---------------------SHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             CeeEeeecchhHHH---HHHHHHhhhccC---------------------cchhheeeEEEEcchhhhcCCHHHHhhhh
Confidence            322222  112211   456676767643                     67888999999999986   454444443

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.88  E-value=0.32  Score=45.48  Aligned_cols=162  Identities=10%  Similarity=-0.019  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHH----HHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCccc
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLV----EILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDC  191 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv----~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~  191 (408)
                      +.-++..+|-++. ++.....+.+. +.-..++    ..+.+......+--++.++.|+..  +...  +..+.....-+
T Consensus       119 ~fPvLDLlRl~~l-~p~~~~~~~~~-~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~--~~~g--~~~l~~~~~~i  192 (304)
T 3ebb_A          119 VFPALDILRLSIK-HPSVNENFCNE-KEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV--GQAG--QKLMMSQRESL  192 (304)
T ss_dssp             CHHHHHHHHHHTT-SHHHHHHHHST-TTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG--SHHH--HHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHc-CccHHHHhhcc-ccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC--Cchh--HHHHHHHHHHH
Confidence            4455555555544 45555555443 2223333    222222222234678889999876  3433  55554212234


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHH
Q 036338          192 LNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKL  271 (408)
Q Consensus       192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~  271 (408)
                      ++.+...+.+. +...|..++.++.|++.........-....++..+..+++...+.++.-.++.||.+|...+.....+
T Consensus       193 l~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~l  271 (304)
T 3ebb_A          193 MSHAIELKSGS-NKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQL  271 (304)
T ss_dssp             HHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHH
Confidence            45555554455 88999999999999986321000011112245556667766568899999999999999877666666


Q ss_pred             HhcCcHHHHHHHh
Q 036338          272 INHKLITELGKLI  284 (408)
Q Consensus       272 ~~~G~i~~Lv~lL  284 (408)
                      .+.=.+...+.-+
T Consensus       272 ak~l~~~~~v~~~  284 (304)
T 3ebb_A          272 AKSLGVDSQIKKY  284 (304)
T ss_dssp             HHHTTHHHHGGGG
T ss_pred             HHHcCHHHHHHHH
Confidence            6543333334333

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=94.93  E-value=0.024  Score=51.25  Aligned_cols=48  Identities=15%  Similarity=0.291  Sum_probs=38.3

Q ss_pred             cccccCccccCCCceecC-CCCcccHhhHHHHHhcC-CCCCCCcccccCC
Q 036338           13 FFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSG-NNTCPATMQVLQS   60 (408)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~-~~~CP~~~~~l~~   60 (408)
                      -..|.||.++..-=+.-+ |+|.|=..|+.+|+... ...||.|+.+.+.
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            346999999988654443 99999999999999863 4689999987544

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=94.73  E-value=1.8  Score=37.24  Aligned_cols=175  Identities=14%  Similarity=0.193  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHhcCCh-h-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338          100 DEVKDIIRVAISKNE-D-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus       100 ~~i~~Lv~~L~s~~~-~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      ..+..|+.+++.+.. + ..+-++.+..++..+|+.    ++  +.||.|..=..-+ +.+..-+...+|..++.  ..+
T Consensus        69 pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~----v~--~vVp~lfanyrig-d~kikIn~~yaLeeIar--anP  139 (253)
T 2db0_A           69 PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL----VK--SMIPVLFANYRIG-DEKTKINVSYALEEIAK--ANP  139 (253)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH----HH--HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHH--HCH
T ss_pred             HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH----HH--hhHHHHHHHHhcC-CccceecHHHHHHHHHH--hCh
Confidence            345556666555432 3 455667777777766542    22  3444444433333 45555777778887775  232


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                      .    .+    .+++.-+..+|.+. +...|-.|...   ++.-.+|...-+.  -++|.|..+|.++ +.-++..|+.+
T Consensus       140 ~----l~----~~v~rdi~smltsk-d~~Dkl~aLnF---i~alGen~~~yv~--PfLprL~aLL~D~-deiVRaSaVEt  204 (253)
T 2db0_A          140 M----LM----ASIVRDFMSMLSSK-NREDKLTALNF---IEAMGENSFKYVN--PFLPRIINLLHDG-DEIVRASAVEA  204 (253)
T ss_dssp             H----HH----HHHHHHHHHHTSCS-SHHHHHHHHHH---HHTCCTTTHHHHG--GGHHHHHGGGGCS-SHHHHHHHHHH
T ss_pred             H----HH----HHHHHHHHHHhcCC-ChHHHHHHHHH---HHHHhccCccccC--cchHHHHHHHcCc-chhhhHHHHHH
Confidence            2    22    35677788888887 87666655444   4444455555553  4799999999997 88999999999


Q ss_pred             HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh
Q 036338          258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILS  324 (408)
Q Consensus       258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~  324 (408)
                      |.+|+...+--..+     |..-++-+.+                     .+..++......|..|.
T Consensus       205 L~~lA~~npklRki-----i~~kl~e~~D---------------------~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          205 LVHLATLNDKLRKV-----VIKRLEELND---------------------TSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             HHHHHTSCHHHHHH-----HHHHHHHCCC---------------------SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCHHHHHH-----HHHHHHHhcC---------------------cHHHHHHHHHHHHHHHH
Confidence            99999865432222     2233444443                     25666666666666664

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=94.00  E-value=1  Score=44.47  Aligned_cols=183  Identities=11%  Similarity=0.105  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChH--HHHHHHhhcCcchhhHHHHHHHHHHhcccccch--HHHHHHHhccCccc
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLV--VMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ--QHLMNLILKRDQDC  191 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i--~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~--~~~~~~i~~~~~g~  191 (408)
                      +-+++-++..++.+ +...+.+... +.+  +.|+.+++....+++.+-++.+|.||.....+.  ....+.+.  ..++
T Consensus       245 ~Y~~ll~iWlLSF~-~~~~~~l~~~-~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~--~~~~  320 (480)
T 1ho8_A          245 QYHSLLLIWLLTFN-PVFANELVQK-YLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLL--LGNA  320 (480)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHHHTT-SHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHH--HHCH
T ss_pred             HHHHHHHHHHHHcC-HHHHHHHHhc-chHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHH--Hccc
Confidence            45678888888875 4566666665 644  677788887666677789999999998621111  11122332  2333


Q ss_pred             HHHHHHHHhcC--CChHHHHHHHHHHHHhh-------cCc------------------------chhhHHhh-hcChHHH
Q 036338          192 LNSLLLVLKQQ--ESVDSRIESLRLLEFIA-------GDA------------------------DSKVKIAE-RDGLLAE  237 (408)
Q Consensus       192 i~~Lv~lL~~~--~~~~~~~~Aa~~L~~La-------~~~------------------------~~~~~i~~-~~g~i~~  237 (408)
                       ++++..|...  .+.+..+.--.+...|.       ..+                        +|...+-+ ....+..
T Consensus       321 -l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~  399 (480)
T 1ho8_A          321 -LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQ  399 (480)
T ss_dssp             -HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHH
T ss_pred             -hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHH
Confidence             5677777642  16666655443333332       111                        22223332 2346789


Q ss_pred             HHHhccc---------CCCHHHHHHHHHHHHHhccCcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 036338          238 TVKSLSL---------DSDRRLIEASLSCLITISSSKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGN  307 (408)
Q Consensus       238 Lv~lL~~---------~~~~~~~~~A~~aL~~Ls~~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
                      |+++|++         +.++....-|+.=|..++.+.++...++ +.|+=..+..||.++                    
T Consensus       400 L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~--------------------  459 (480)
T 1ho8_A          400 LIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS--------------------  459 (480)
T ss_dssp             HHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS--------------------
T ss_pred             HHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC--------------------
Confidence            9999973         2267788888888999998666555555 688888888999764                    


Q ss_pred             CCcchHHHHHHHHHHHh
Q 036338          308 GTVLITEKALRLVEILS  324 (408)
Q Consensus       308 ~~~~~~~~a~~~L~~L~  324 (408)
                       ++.++..|+.++..+-
T Consensus       460 -d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          460 -DSRVKYEALKATQAII  475 (480)
T ss_dssp             -SHHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHHH
Confidence             8999999999887763

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=93.39  E-value=1.2  Score=40.54  Aligned_cols=187  Identities=11%  Similarity=0.122  Sum_probs=110.8

Q ss_pred             HHHHHhcCCh-hHHHHHHHHHHHhhhChhh--hh-hhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch---
Q 036338          105 IIRVAISKNE-DFSENLTKIVAFAKESDEN--KT-FLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ---  177 (408)
Q Consensus       105 Lv~~L~s~~~-~~~~Al~~L~~la~~~~~~--r~-~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~---  177 (408)
                      |-+.|.+.+= +|.+|+..|..+....+..  .. .+......++.+-..+.+.. ..++..++.+|..++......   
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhhhhcc
Confidence            3456777653 4999999998876543221  11 11122123445555665443 556688888877665311111   


Q ss_pred             HHHHHHHhccCcccHHHHHHH-HhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLV-LKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~l-L~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      .......   -..+++.|+.- |.++ ...++..|..+|..+........      -+++.++..+++. ++.++..++.
T Consensus        93 ~~~~~~~---~~~~l~~lveK~l~~~-k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~~K-npkv~~~~l~  161 (278)
T 4ffb_C           93 NAHNITL---ISTWTPLLVEKGLTSS-RATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFEKK-LPKLIAAAAN  161 (278)
T ss_dssp             HHHHHHH---HHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGGCS-CHHHHHHHHH
T ss_pred             cchhHHH---HHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhcc-CHHHHHHHHH
Confidence            1001111   23567777764 5666 77888888888887764332211      2356677778776 9999999999


Q ss_pred             HHHHhccCc----chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          257 CLITISSSK----RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       257 aL~~Ls~~~----~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      .|..+....    -+....+ ..+++.+..+|.+.                     ++.+++.|..++..+-.
T Consensus       162 ~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~---------------------~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          162 CVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHG---------------------DRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCS---------------------SHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCC---------------------cHHHHHHHHHHHHHHHH
Confidence            998875421    1222222 12456677777754                     89999999999988865

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=93.38  E-value=0.56  Score=44.82  Aligned_cols=205  Identities=8%  Similarity=0.088  Sum_probs=112.9

Q ss_pred             cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccCHHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCC
Q 036338           64 VPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDG  142 (408)
Q Consensus        64 ~~n~~l~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G  142 (408)
                      .+|..+|+++=-+...-..   .+   .+   +  --.+..+.+.++++++- |-.|++.|..+...  +.    .+  .
T Consensus        79 s~d~~lKrLvYLyl~~~~~---~~---~e---~--iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m----~~--~  139 (355)
T 3tjz_B           79 SNDPTLRRMCYLTIKEMSC---IA---ED---V--IIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TM----LQ--A  139 (355)
T ss_dssp             CCCHHHHHHHHHHHHHHTT---TS---SC---G--GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TT----HH--H
T ss_pred             CCCHHHHHHHHHHHHHhCC---CH---HH---H--HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HH----HH--H
Confidence            3577888887666544321   11   11   0  23456677888888876 88888888888643  21    21  2


Q ss_pred             hHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc
Q 036338          143 LVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA  222 (408)
Q Consensus       143 ~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~  222 (408)
                      ..+.+...|.+.+ +-+...|+-+...|..  ...    +.+    .+++..+-+++.+. +..++.+|..+|..+...+
T Consensus       140 l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~--~~p----e~v----~~~~~~l~~ll~d~-n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          140 IERYMKQAIVDKV-PSVSSSALVSSLHLLK--CSF----DVV----KRWVNEAQEAASSD-NIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             HHHHHHHHHTCSS-HHHHHHHHHHHHHHTT--TCH----HHH----HTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCC-HHHHHHHHHHHHHHhc--cCH----HHH----HHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhhc
Confidence            3445666666555 2233777777777765  232    233    25788888888877 8888888888888887643


Q ss_pred             c-hhhHHh----h---------------------------hcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHH
Q 036338          223 D-SKVKIA----E---------------------------RDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTK  270 (408)
Q Consensus       223 ~-~~~~i~----~---------------------------~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~  270 (408)
                      . .-..+.    .                           ....++.|..+|++. ++.+.=.|++++..+...+..   
T Consensus       208 ~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~---  283 (355)
T 3tjz_B          208 RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK---  283 (355)
T ss_dssp             HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCS-SHHHHHHHHHHHTC----------
T ss_pred             hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH---
Confidence            2 000000    0                           012333344444443 566777777777777553211   


Q ss_pred             HHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          271 LINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       271 ~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      . -.-++.+|..+|.++                     ++.++-.|+..|..++.
T Consensus       284 ~-~~~a~~~L~~fLss~---------------------d~niryvaLr~L~~l~~  316 (355)
T 3tjz_B          284 E-LAPAVSVLQLFCSSP---------------------KAALRYAAVRTLNKVAM  316 (355)
T ss_dssp             -----CCCTHHHHHHSS---------------------SSSSHHHHHHCC-----
T ss_pred             H-HHHHHHHHHHHHcCC---------------------CchHHHHHHHHHHHHHH
Confidence            1 133566777777754                     77888888888888765

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=93.29  E-value=1  Score=41.14  Aligned_cols=179  Identities=13%  Similarity=0.133  Sum_probs=104.5

Q ss_pred             HHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch-HHHHHH
Q 036338          106 IRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ-QHLMNL  183 (408)
Q Consensus       106 v~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~-~~~~~~  183 (408)
                      ...|.+.+.. +.+|+..|......+++  ..+...+..++-+.--+.+. ...+...++.+|..+.....+. ..+...
T Consensus        52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           52 MSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            3344444544 77788888777654432  22222201122111111222 2334455555554442100011 000000


Q ss_pred             HhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338          184 ILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS  263 (408)
Q Consensus       184 i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~  263 (408)
                      -   ..-.+|.|+.-+..+ ...+|..+-.+|..+...      ..- ..+++.++.-+++. +...++..+..|..+-.
T Consensus       129 e---a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v------~~~-~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          129 E---VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDV------VGP-LKMTPMLLDALKSK-NARQRSECLLVIEYYIT  196 (266)
T ss_dssp             H---HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH------HCH-HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH------CCH-HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence            0   124589999888777 788998888888777632      222 44678888888886 89999999999888754


Q ss_pred             CcchHHHHHhcCcH---HHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh
Q 036338          264 SKRAKTKLINHKLI---TELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILS  324 (408)
Q Consensus       264 ~~~n~~~~~~~G~i---~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~  324 (408)
                      ...-.    -..++   +.+..++.++                     +..+++.|+.++..+-
T Consensus       197 ~~G~~----~~~~l~~~~~ia~ll~D~---------------------d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          197 NAGIS----PLKSLSVEKTVAPFVGDK---------------------DVNVRNAAINVLVACF  235 (266)
T ss_dssp             HHCSG----GGGGGCHHHHHGGGGGCS---------------------SHHHHHHHHHHHHHHH
T ss_pred             hcCCC----ccccccchHHHHHHHcCC---------------------CHHHHHHHHHHHHHHH
Confidence            22211    24578   9999999865                     8899999988887654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=93.05  E-value=4.6  Score=38.38  Aligned_cols=100  Identities=11%  Similarity=0.124  Sum_probs=56.1

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHH
Q 036338          192 LNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKL  271 (408)
Q Consensus       192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~  271 (408)
                      +..|.+=++++ ++-.|-.|.++|.++...+     +.+  ...+++-+.|.+. ++-+++.|+-+.+.|......   +
T Consensus       106 ~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~~-----m~~--~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~pe---~  173 (355)
T 3tjz_B          106 TSSLTKDMTGK-EDSYRGPAVRALCQITDST-----MLQ--AIERYMKQAIVDK-VPSVSSSALVSSLHLLKCSFD---V  173 (355)
T ss_dssp             HHHHHHHHHSS-CHHHHHHHHHHHHHHCCTT-----THH--HHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTCHH---H
T ss_pred             HHHHHhhcCCC-cHhHHHHHHHHHhcCCCHH-----HHH--HHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCHH---H
Confidence            45555555666 6666666666666665332     221  2445555556554 666666666666666554322   2


Q ss_pred             HhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          272 INHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       272 ~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      ++ +.++.+-+++.+.                     ++.++-.|+++|..+..
T Consensus       174 v~-~~~~~l~~ll~d~---------------------n~~V~~~Al~lL~ei~~  205 (355)
T 3tjz_B          174 VK-RWVNEAQEAASSD---------------------NIMVQYHALGLLYHVRK  205 (355)
T ss_dssp             HH-TTHHHHHHHTTCS---------------------SHHHHHHHHHHHHHHHT
T ss_pred             HH-HHHHHHHHHhcCC---------------------CccHHHHHHHHHHHHHh
Confidence            22 4566666666542                     55666666666666655

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=92.95  E-value=1.3  Score=44.83  Aligned_cols=236  Identities=15%  Similarity=0.125  Sum_probs=139.2

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChh--hhhhhhhcCChHHHHHHHh--hc-C----c--chhhHHHHHHHHH
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDE--NKTFLAKFDGLVVMLVEIL--SN-V----N--DVNMLKQVIRVLD  168 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~--~r~~i~~~~G~i~~Lv~lL--~s-~----~--~~~~~e~A~~~L~  168 (408)
                      -...|+..|-++.=+ |..|+-.|+.+.+....  .|..-... ...-.|+-+|  +. +    +  -..+.|.++.+|+
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            456677777777666 88899999998866532  11111111 1222223333  11 1    1  1224588888888


Q ss_pred             HhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCH
Q 036338          169 LILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDR  248 (408)
Q Consensus       169 ~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~  248 (408)
                      .+ .  +=++         +..++..|+..+... ..++|..+.-.|..+      +..+..-.++++.++.-|++. +.
T Consensus       254 aL-~--hLp~---------e~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~-DD  313 (800)
T 3oc3_A          254 RI-Y--PLIG---------PNDIIEQLVGFLDSG-DWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSP-DE  313 (800)
T ss_dssp             HH-T--TTSC---------SCCHHHHHTTGGGCS-CHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCS-SH
T ss_pred             HH-H--hCCh---------hHHHHHHHHhhcCCC-CeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCc-cc
Confidence            77 4  2221         123344555555677 899999999999999      122211257899999999987 88


Q ss_pred             HHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHH
Q 036338          249 RLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQ  328 (408)
Q Consensus       249 ~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~  328 (408)
                      +++..|+.+|.-++ .++..     ..++..|.+.|.+-                   ++-.......+..|..|+..+.
T Consensus       314 DVRAVAAetLiPIA-~p~~l-----~~LL~iLWd~L~~L-------------------DDLSASTgSVMdLLAkL~s~p~  368 (800)
T 3oc3_A          314 DIKLLSAELLCHFP-ITDSL-----DLVLEKCWKNIESE-------------------ELISVSKTSNLSLLTKIYRENP  368 (800)
T ss_dssp             HHHHHHHHHHTTSC-CSSTH-----HHHHHHHHHHHHTC-------------------CSCCTTHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhhhhc-chhhH-----HHHHHHHHHHhhhh-------------------cccchhhHHHHHHHHHHHcCCc
Confidence            99999999999998 22221     23456677777642                   2234455666777777776552


Q ss_pred             HHHHHHhhcCchHHHHHHHHH---HHHHHHHh-------cCcHHHHHHHHhhcCCHHHHHHHHHHHH
Q 036338          329 GRMEICQDAALLNGVVQKMLK---TAQEAVSS-------SNVLTKILLLMQSNCTPAVRQMSADLLK  385 (408)
Q Consensus       329 ~~~~~~~~~g~i~~lv~~l~~---~~~~~~~~-------~g~~~~Ll~ll~~~~~~~~k~~A~~lL~  385 (408)
                      +   ....+..+|.|.-.|..   .++..+++       ...+..+.+-+--+..+.+++.+.++.+
T Consensus       369 ~---a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          369 E---LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             T---CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             c---cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            1   11122344444432211   55555542       3445666666666778888988876665

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=92.60  E-value=0.21  Score=37.06  Aligned_cols=47  Identities=17%  Similarity=0.150  Sum_probs=37.9

Q ss_pred             cccccCccccCC-----Cceec--CCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338           13 FFRCPISLDVMK-----SPVSL--CTGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        13 ~~~Cpi~~~~~~-----dPv~~--~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      .-+|.||++-.-     +|.+.  .|+...||.|.+--.++++..||+|+.++.
T Consensus        16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk   69 (93)
T 1weo_A           16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence            358999998532     25565  499999999998888889999999998775

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=92.53  E-value=7.6  Score=37.31  Aligned_cols=173  Identities=14%  Similarity=0.165  Sum_probs=108.1

Q ss_pred             HHHHHhcCChh--HHHHHHHHHHHhhhChhhh-hhhhhcCChHHHHHHHhhcC---------c-chhhHHHHHHHHHHhc
Q 036338          105 IIRVAISKNED--FSENLTKIVAFAKESDENK-TFLAKFDGLVVMLVEILSNV---------N-DVNMLKQVIRVLDLIL  171 (408)
Q Consensus       105 Lv~~L~s~~~~--~~~Al~~L~~la~~~~~~r-~~i~~~~G~i~~Lv~lL~s~---------~-~~~~~e~A~~~L~~L~  171 (408)
                      .|+.|.+....  -.+.+..|+.....++-.+ +.+. . +|+..|+.+|..-         . +...+..++.+|..+.
T Consensus        71 yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~-~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm  148 (383)
T 3eg5_B           71 YIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-A-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM  148 (383)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-H-HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-H-ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence            46666655322  2345566665544444332 3444 6 7899999999631         1 2334467788888877


Q ss_pred             ccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--h-hhHHhh---------hcChHHHHH
Q 036338          172 NKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--S-KVKIAE---------RDGLLAETV  239 (408)
Q Consensus       172 ~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~-~~~i~~---------~~g~i~~Lv  239 (408)
                      .  ... .+..++.  ....|..|+..|.+. +..++..+..+|..+|..++  + ...+.+         ...-+.++|
T Consensus       149 N--~~~-G~~~vl~--~~~~i~~l~~~L~s~-~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv  222 (383)
T 3eg5_B          149 N--NKF-GIKTMLE--TEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLL  222 (383)
T ss_dssp             S--SHH-HHHHHHT--CSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred             c--chh-hHHHHHc--ChHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            5  333 3355554  778899999999888 99999999999999987654  2 333221         123477889


Q ss_pred             HhcccCCCHHHHHHHHHHHHHhccCcc-------hHHHHHhcCcHHHHHHHhcc
Q 036338          240 KSLSLDSDRRLIEASLSCLITISSSKR-------AKTKLINHKLITELGKLITD  286 (408)
Q Consensus       240 ~lL~~~~~~~~~~~A~~aL~~Ls~~~~-------n~~~~~~~G~i~~Lv~lL~~  286 (408)
                      ..|+++.+.+.+.++...+=.+....+       -|..+...|..+.+-. |+.
T Consensus       223 ~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~  275 (383)
T 3eg5_B          223 DGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LRE  275 (383)
T ss_dssp             HTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTT
T ss_pred             HHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-Hhc
Confidence            999875466666666555555655443       2445556666665554 653

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=92.32  E-value=6.2  Score=35.61  Aligned_cols=207  Identities=11%  Similarity=0.077  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhc-------Cc-c---hhhHHHHHHHH
Q 036338          100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSN-------VN-D---VNMLKQVIRVL  167 (408)
Q Consensus       100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s-------~~-~---~~~~e~A~~~L  167 (408)
                      +.+-.++..|..+  + |..|+..|..--...+..--.+-...|.+..|+.=+-+       +. .   ..-+.+|+..|
T Consensus         3 ~~i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLl   80 (268)
T 2fv2_A            3 EKIYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL   80 (268)
T ss_dssp             HHHHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHH
Confidence            3455566666543  4 77788777654333344444455555888777654432       22 1   11246777777


Q ss_pred             HHhcccccchHHHHHHHhccCcccHHHHHHHHhcCC----ChHHHHHHHHHHHHhhcCcch--hhHHhhhcChHHHHHHh
Q 036338          168 DLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQE----SVDSRIESLRLLEFIAGDADS--KVKIAERDGLLAETVKS  241 (408)
Q Consensus       168 ~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~----~~~~~~~Aa~~L~~La~~~~~--~~~i~~~~g~i~~Lv~l  241 (408)
                      -.++.  +.+.  |..+.  ++.+.-.|.-+|+...    -.-.|-.+..+++.|.+.++.  -..+.. .++||..++.
T Consensus        81 QcvAs--hpet--r~~Fl--~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~-tEiiplCLri  153 (268)
T 2fv2_A           81 QCVAS--HPET--RSAFL--AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLT-TEIIPLCLRI  153 (268)
T ss_dssp             HHHHH--CTTT--HHHHH--HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH-TTHHHHHHHH
T ss_pred             HHHHc--Ccch--hhHHH--HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHh-hhHHHHHHHH
Confidence            77776  5544  55554  6666656666666431    134677889999999876542  222224 6899999999


Q ss_pred             cccCCCHHHHHHHHHHHHHhccCcchHHHHH-------h-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchH
Q 036338          242 LSLDSDRRLIEASLSCLITISSSKRAKTKLI-------N-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLIT  313 (408)
Q Consensus       242 L~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~-------~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
                      ++.| +.-.+.-|+-.+..+-.++..-..+-       . ..++..+|.-+..                    ..++.+.
T Consensus       154 me~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~--------------------~ps~RLL  212 (268)
T 2fv2_A          154 MESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSK--------------------EPSARLL  212 (268)
T ss_dssp             HHHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTT--------------------SCCHHHH
T ss_pred             Hhhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhc--------------------CCChHHH
Confidence            9998 77777778887777765544222221       1 1233444444432                    3478899


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHhh
Q 036338          314 EKALRLVEILSTTKQGRMEICQD  336 (408)
Q Consensus       314 ~~a~~~L~~L~~~~~~~~~~~~~  336 (408)
                      ....+.-..|+.++..|.++...
T Consensus       213 KhiircYlRLsdn~rar~aL~~~  235 (268)
T 2fv2_A          213 KHVVRCYLRLSDNPRAREALRQC  235 (268)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHh
Confidence            99999999999999999888653

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=92.06  E-value=6.2  Score=35.01  Aligned_cols=173  Identities=13%  Similarity=0.162  Sum_probs=102.6

Q ss_pred             HHHHHhcCChh-H-HHHHHHHHHHhhhChhh-hhhhhhcCChHHHHHHHhhcCc----------chhhHHHHHHHHHHhc
Q 036338          105 IIRVAISKNED-F-SENLTKIVAFAKESDEN-KTFLAKFDGLVVMLVEILSNVN----------DVNMLKQVIRVLDLIL  171 (408)
Q Consensus       105 Lv~~L~s~~~~-~-~~Al~~L~~la~~~~~~-r~~i~~~~G~i~~Lv~lL~s~~----------~~~~~e~A~~~L~~L~  171 (408)
                      .|+.|++.... + .+-+..|+.....++.. .+.+ .. ||+..|+.+|....          +...+..++.+|..+.
T Consensus         5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~-~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm   82 (233)
T 2f31_A            5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GA-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   82 (233)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HH-HHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HH-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh
Confidence            45556554322 1 23344444433433332 2334 46 88888999986521          2233467778888777


Q ss_pred             ccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--h-hhHHhh---------hcChHHHHH
Q 036338          172 NKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--S-KVKIAE---------RDGLLAETV  239 (408)
Q Consensus       172 ~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~-~~~i~~---------~~g~i~~Lv  239 (408)
                      .   ....+..++.  ....+..|+..|.+. +..+|..+..+|..+|..++  + ...+.+         ...-+.++|
T Consensus        83 n---~~~G~~~vl~--~~~~i~~l~~~L~s~-~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv  156 (233)
T 2f31_A           83 N---NKFGIKTMLE--TEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLL  156 (233)
T ss_dssp             S---SHHHHHHHHT--SSSHHHHHHTTCCTT-SHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred             C---ChHHHHHHHc--CcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHH
Confidence            5   3333355554  678899999999888 99999999999999987654  4 333311         123466788


Q ss_pred             HhcccCCCHHHHHHHHHHHHHhccCcc-------hHHHHHhcCcHHHHHHHhcc
Q 036338          240 KSLSLDSDRRLIEASLSCLITISSSKR-------AKTKLINHKLITELGKLITD  286 (408)
Q Consensus       240 ~lL~~~~~~~~~~~A~~aL~~Ls~~~~-------n~~~~~~~G~i~~Lv~lL~~  286 (408)
                      +.|++..+.+.+.+....+=.+..+.+       -|..+...|..+.| +-|+.
T Consensus       157 ~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il-~~l~~  209 (233)
T 2f31_A          157 DGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELRE  209 (233)
T ss_dssp             HTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHH-HHHHH
T ss_pred             HHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhc
Confidence            888765456666555555555655443       24455556655544 44443

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=90.86  E-value=5.6  Score=37.66  Aligned_cols=119  Identities=15%  Similarity=0.218  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHH
Q 036338          159 MLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAET  238 (408)
Q Consensus       159 ~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~L  238 (408)
                      +.-.+...|..| .  +|++.+...+   +..++..+...+... +.+.-....++|...+....-+..=.  ...+|.+
T Consensus       259 VvtR~FDLL~LL-m--HdSnAIDGFV---k~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi  329 (619)
T 3c2g_A          259 VIIRTFDLLGLL-L--HDSDAIDGFV---RSDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFL  329 (619)
T ss_dssp             HHHHHHHHHHHH-C--CSHHHHHHHH---HTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHH
T ss_pred             HHHHHHHHHHHH-h--ccccccccee---ecccceeEEEEeecC-CcHHHHhhhheeeeecchHHHhhccc--cccchHH
Confidence            334455555444 4  6877655555   678899999999998 99999999999999885544332222  4578999


Q ss_pred             HHhcccCCCHHHHHHHHHHHHHhccCcch-HHHHHhcCcHHHHHHHhcc
Q 036338          239 VKSLSLDSDRRLIEASLSCLITISSSKRA-KTKLINHKLITELGKLITD  286 (408)
Q Consensus       239 v~lL~~~~~~~~~~~A~~aL~~Ls~~~~n-~~~~~~~G~i~~Lv~lL~~  286 (408)
                      +..++-..+.++.=...+.|.|...+... +...+..|+|+.|-+.+..
T Consensus       330 ~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k  378 (619)
T 3c2g_A          330 LRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK  378 (619)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             HHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence            99887444778999999999999988775 4455589999999988753

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=90.86  E-value=5.4  Score=37.05  Aligned_cols=160  Identities=11%  Similarity=0.128  Sum_probs=92.0

Q ss_pred             hHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCccc---HHHHHHHHhcCCChHHHHHHHHHHHHh
Q 036338          143 LVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDC---LNSLLLVLKQQESVDSRIESLRLLEFI  218 (408)
Q Consensus       143 ~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~---i~~Lv~lL~~~~~~~~~~~Aa~~L~~L  218 (408)
                      .+..+.+++ +.. +..  --++.+|+.+..  +..-  ...+.. +.+.   +..+...+....++..+.-+++++.|+
T Consensus       104 ~l~~l~kil-~WP~~~~--fPvLDLlRl~~l--~p~~--~~~~~~-~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~Nl  175 (304)
T 3ebb_A          104 QLQILWKAI-NCPEDIV--FPALDILRLSIK--HPSV--NENFCN-EKEGAQFSSHLINLLNPKGKPANQLLALRTFCNC  175 (304)
T ss_dssp             HHHHHHHHH-TSCTTTC--HHHHHHHHHHTT--SHHH--HHHHHS-TTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHH-cCCHHhH--HHHHHHHHHHHc--CccH--HHHhhc-cccchHHHHHHHHhcCCCCChHHHHHHHHHHHHc
Confidence            456666665 333 333  666777766654  2222  233321 1111   222223332222566788899999999


Q ss_pred             hcCcchhhHHhh-hcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc---hHHHHHhcCcHHHHHHHhccCCCCCCCC
Q 036338          219 AGDADSKVKIAE-RDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR---AKTKLINHKLITELGKLITDGHNGNGSG  294 (408)
Q Consensus       219 a~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~---n~~~~~~~G~i~~Lv~lL~~~~~~~~~~  294 (408)
                      -.++..+..+.. ...+++.+...+.+. +..++.+++..++|++....   ....  ..-++..+..++..        
T Consensus       176 F~~~~g~~~l~~~~~~il~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~--------  244 (304)
T 3ebb_A          176 FVGQAGQKLMMSQRESLMSHAIELKSGS-NKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEV--------  244 (304)
T ss_dssp             GGSHHHHHHHHHTHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTT--------
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhc--------
Confidence            988888877663 223555555555554 77899999999999986321   1111  11134444455543        


Q ss_pred             CCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHH
Q 036338          295 NGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEI  333 (408)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~  333 (408)
                                  ..+.+....++.+|.+|...+....++
T Consensus       245 ------------~~d~EalyR~LvALGtL~~~~~~~~~l  271 (304)
T 3ebb_A          245 ------------VQDLEATFRLLVALGTLISDDSNAVQL  271 (304)
T ss_dssp             ------------CCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ------------cCCHHHHHHHHHHHHHHHhCChhHHHH
Confidence                        237789999999999998653333333

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=88.77  E-value=17  Score=34.81  Aligned_cols=173  Identities=13%  Similarity=0.165  Sum_probs=103.5

Q ss_pred             HHHHHhcCChh-H-HHHHHHHHHHhhhChhh-hhhhhhcCChHHHHHHHhhcCc----------chhhHHHHHHHHHHhc
Q 036338          105 IIRVAISKNED-F-SENLTKIVAFAKESDEN-KTFLAKFDGLVVMLVEILSNVN----------DVNMLKQVIRVLDLIL  171 (408)
Q Consensus       105 Lv~~L~s~~~~-~-~~Al~~L~~la~~~~~~-r~~i~~~~G~i~~Lv~lL~s~~----------~~~~~e~A~~~L~~L~  171 (408)
                      .|+.|++.... + .+-+..|+.....++.. ...+. . +|+..|+.+|..-.          +......++.+|..+.
T Consensus         9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~-~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm   86 (386)
T 2bnx_A            9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-A-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   86 (386)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-H-HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-H-hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence            45566655332 2 22344454444443332 22333 5 78888999885421          2233467778888777


Q ss_pred             ccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--h-hhHHhh---------hcChHHHHH
Q 036338          172 NKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--S-KVKIAE---------RDGLLAETV  239 (408)
Q Consensus       172 ~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~-~~~i~~---------~~g~i~~Lv  239 (408)
                      .   ....+..++.  ...++..|+..|.+. +..++..+..+|..+|..++  + ...+..         ...-+.+||
T Consensus        87 N---~~~Gl~~vl~--~~~~i~~l~~sL~s~-~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv  160 (386)
T 2bnx_A           87 N---NKFGIKTMLE--TEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLL  160 (386)
T ss_dssp             S---SHHHHHHHHH--SSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred             C---CHHHHHHHHc--CcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHH
Confidence            5   3333355554  778899999998887 89999999999999988654  3 222211         123466788


Q ss_pred             HhcccCCCHHHHHHHHHHHHHhccCcc-------hHHHHHhcCcHHHHHHHhcc
Q 036338          240 KSLSLDSDRRLIEASLSCLITISSSKR-------AKTKLINHKLITELGKLITD  286 (408)
Q Consensus       240 ~lL~~~~~~~~~~~A~~aL~~Ls~~~~-------n~~~~~~~G~i~~Lv~lL~~  286 (408)
                      ..++++.+.+.+.+.+..+-.|..+.+       -|..+...|..+.| +-|+.
T Consensus       161 ~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr~  213 (386)
T 2bnx_A          161 DGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELRE  213 (386)
T ss_dssp             HHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTT
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhc
Confidence            888865466666555555555655443       24555566665554 55553

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=88.67  E-value=0.54  Score=34.04  Aligned_cols=44  Identities=11%  Similarity=0.235  Sum_probs=33.1

Q ss_pred             CCCcccccCccccCCCceecC----CCCcccHhhHHHHHhc----CCCCCCC
Q 036338           10 VPSFFRCPISLDVMKSPVSLC----TGVTYDRASIQRWLDS----GNNTCPA   53 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~~----cgh~f~r~cI~~~~~~----~~~~CP~   53 (408)
                      ....+.|.+|++-+.|.-.+.    -+|.||-.|-..+++.    +.-+||.
T Consensus        12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS   63 (93)
T 2cs3_A           12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS   63 (93)
T ss_dssp             SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred             CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence            345689999999999965543    4799999998888864    2235665

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=87.69  E-value=19  Score=38.73  Aligned_cols=110  Identities=12%  Similarity=0.074  Sum_probs=69.1

Q ss_pred             HHHHHHHHh------cCCChHHHHHHHHHHHHhhcCcchhhH-Hh---hhcChHHHHHH----hcccC--CCHHHHHHHH
Q 036338          192 LNSLLLVLK------QQESVDSRIESLRLLEFIAGDADSKVK-IA---ERDGLLAETVK----SLSLD--SDRRLIEASL  255 (408)
Q Consensus       192 i~~Lv~lL~------~~~~~~~~~~Aa~~L~~La~~~~~~~~-i~---~~~g~i~~Lv~----lL~~~--~~~~~~~~A~  255 (408)
                      ++.+-..|.      +. +...|+.|..++..++.....+.. +.   ......+.|++    .|.+.  .++.++..|+
T Consensus       401 l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~  479 (960)
T 1wa5_C          401 LAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAI  479 (960)
T ss_dssp             HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHH
Confidence            344444455      44 677889999999999864321110 00   00023333333    33443  2789999999


Q ss_pred             HHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338          256 SCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT  326 (408)
Q Consensus       256 ~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~  326 (408)
                      ++|..++..-. . .. -..+++.++..|.++                     +..++..|+.+|.+++..
T Consensus       480 ~~lg~~~~~~~-~-~~-l~~~l~~l~~~L~d~---------------------~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          480 KYIYTFRNQLT-K-AQ-LIELMPILATFLQTD---------------------EYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHHHHTGGGSC-H-HH-HHHHHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhCC-H-HH-HHHHHHHHHHHhCCC---------------------ChhHHHHHHHHHHHHHhc
Confidence            99999987531 1 11 234677888888643                     688999999999999863

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=87.28  E-value=6  Score=43.24  Aligned_cols=119  Identities=7%  Similarity=0.093  Sum_probs=71.1

Q ss_pred             hhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCC----ChHHHHHHHHHHHHhhcCcchhhHHhhhc
Q 036338          157 VNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQE----SVDSRIESLRLLEFIAGDADSKVKIAERD  232 (408)
Q Consensus       157 ~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~----~~~~~~~Aa~~L~~La~~~~~~~~i~~~~  232 (408)
                      =+..|.++.+++.++.+..++.. +..+    ..+++.|+.++....    ...++..++++|+..+.--.......  .
T Consensus       467 W~~~EA~~~a~gaIa~~~~~~~e-~~~l----~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~  539 (1023)
T 4hat_C          467 WHNINTLSWAIGSISGTMSEDTE-KRFV----VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--R  539 (1023)
T ss_dssp             HHHHHHHHHHHHHTTTSSCHHHH-HHHH----HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--H
T ss_pred             HHHHHHHHHHHHHHHcCCCchhH-HHHH----HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--H
Confidence            34559999999998863222211 3333    367888999887421    22344556788877664322222222  2


Q ss_pred             ChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHh------cCcHHHHHHHhc
Q 036338          233 GLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLIN------HKLITELGKLIT  285 (408)
Q Consensus       233 g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~------~G~i~~Lv~lL~  285 (408)
                      ..+..|+..+.+. ++.++.+|++||.+||..  .+..++.      .--++.++..+.
T Consensus       540 ~vl~~L~~~l~~~-~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~  595 (1023)
T 4hat_C          540 TVILKLFEFMHET-HEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQ  595 (1023)
T ss_dssp             HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHH
T ss_pred             HHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHH
Confidence            3566666666654 788999999999999974  3344442      124555555443

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=85.47  E-value=3.7  Score=37.21  Aligned_cols=143  Identities=9%  Similarity=0.076  Sum_probs=83.5

Q ss_pred             HHHHHhcCChh-HHHHHHHHHHHhhhChh----hhhhhhhcCChHHHHHHH-hhcCcchhhHHHHHHHHHHhcccccchH
Q 036338          105 IIRVAISKNED-FSENLTKIVAFAKESDE----NKTFLAKFDGLVVMLVEI-LSNVNDVNMLKQVIRVLDLILNKIEDQQ  178 (408)
Q Consensus       105 Lv~~L~s~~~~-~~~Al~~L~~la~~~~~----~r~~i~~~~G~i~~Lv~l-L~s~~~~~~~e~A~~~L~~L~~~~~~~~  178 (408)
                      +-+.+...+.. +..++..|..++.....    +..........+|.|+.= |.+.. ..+.+.|+.+|..+..  ....
T Consensus        60 lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k-~~~~~~a~~~l~~~~~--~~~~  136 (278)
T 4ffb_C           60 FAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSR-ATTKTQSMSCILSLCG--LDTS  136 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCC-HHHHHHHHHHHHHHHH--TSSS
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHH--hcCc
Confidence            33455566665 77788888887753211    111111111456777754 44443 3334666666655542  1111


Q ss_pred             HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcch-----hhHHhhhcChHHHHHHhcccCCCHHHHHH
Q 036338          179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADS-----KVKIAERDGLLAETVKSLSLDSDRRLIEA  253 (408)
Q Consensus       179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~-----~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  253 (408)
                               ..-.++.++..+.+. ++.++..++..|..+......     +..+   ..+++.+.++|.+. ++.+|.+
T Consensus       137 ---------~~~~~e~l~~~l~~K-npkv~~~~l~~l~~~l~~fg~~~~~~k~~l---~~i~~~l~k~l~d~-~~~VR~a  202 (278)
T 4ffb_C          137 ---------ITQSVELVIPFFEKK-LPKLIAAAANCVYELMAAFGLTNVNVQTFL---PELLKHVPQLAGHG-DRNVRSQ  202 (278)
T ss_dssp             ---------SHHHHHHHGGGGGCS-CHHHHHHHHHHHHHHHHHHTTTTCCHHHHH---HHHGGGHHHHHTCS-SHHHHHH
T ss_pred             ---------HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHhCCCcCCchhHH---HHHHHHHHHHHhCC-cHHHHHH
Confidence                     111244555567777 999999988888877543211     1111   23556778888886 9999999


Q ss_pred             HHHHHHHhccC
Q 036338          254 SLSCLITISSS  264 (408)
Q Consensus       254 A~~aL~~Ls~~  264 (408)
                      |..++..+-..
T Consensus       203 A~~l~~~ly~~  213 (278)
T 4ffb_C          203 TMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHH
Confidence            99999888654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=83.86  E-value=11  Score=40.60  Aligned_cols=130  Identities=11%  Similarity=0.035  Sum_probs=77.4

Q ss_pred             hhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHH---h--cCCChHHHHHHHHHHHHhhcCcchhhHHhhhc
Q 036338          158 NMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVL---K--QQESVDSRIESLRLLEFIAGDADSKVKIAERD  232 (408)
Q Consensus       158 ~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL---~--~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~  232 (408)
                      +..|.|+.+|..++..  -...        ....++.++.++   .  .. +..+|..++++|..++..-.......  .
T Consensus       479 ~~~eaal~~l~~iae~--~~~~--------~~~~l~~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l--~  545 (971)
T 2x1g_F          479 TKLEACIYSFQSVAEH--FGGE--------EKRQIPRLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYI--P  545 (971)
T ss_dssp             HHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CH--H
T ss_pred             HHHHHHHHHHHHHHhh--cChh--------hhHHHHHHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH--H
Confidence            3458888999888752  1111        112344444444   2  24 67899999999999985422111222  2


Q ss_pred             ChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHH--hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCc
Q 036338          233 GLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLI--NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTV  310 (408)
Q Consensus       233 g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~--~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (408)
                      .+++.|+..| +   +.++..|+.||.+|+..-  +..+.  -...+..|..++..+                   .-+.
T Consensus       546 ~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~-------------------~~~~  600 (971)
T 2x1g_F          546 PAINLLVRGL-N---SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTG-------------------RMKN  600 (971)
T ss_dssp             HHHHHHHHHH-H---SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHST-------------------TSCH
T ss_pred             HHHHHHHHHh-C---hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCC-------------------CCCh
Confidence            4677777777 3   468999999999999543  33343  234555666666642                   2245


Q ss_pred             chHHHHHHHHHHHhC
Q 036338          311 LITEKALRLVEILST  325 (408)
Q Consensus       311 ~~~~~a~~~L~~L~~  325 (408)
                      ..++.+..++..++.
T Consensus       601 ~~~~~~~~ai~~i~~  615 (971)
T 2x1g_F          601 SDSVRLMFSIGKLMS  615 (971)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            667777777776654

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=82.91  E-value=0.27  Score=29.76  Aligned_cols=17  Identities=24%  Similarity=0.407  Sum_probs=13.4

Q ss_pred             CcccccCccccCCCcee
Q 036338           12 SFFRCPISLDVMKSPVS   28 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~   28 (408)
                      +-|+||+|...+.+|-.
T Consensus         4 EGFiCP~C~~~l~s~~~   20 (34)
T 3mjh_B            4 EGFICPQCMKSLGSADE   20 (34)
T ss_dssp             EEEECTTTCCEESSHHH
T ss_pred             cccCCcHHHHHcCCHHH
Confidence            35899999998888754

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=82.25  E-value=14  Score=33.50  Aligned_cols=66  Identities=20%  Similarity=0.189  Sum_probs=50.5

Q ss_pred             cHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChH---HHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338          191 CLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLL---AETVKSLSLDSDRRLIEASLSCLITISS  263 (408)
Q Consensus       191 ~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i---~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~  263 (408)
                      +++.++.-+++. +..+|+..+..|..+-......    . ..++   +.+.+++.+. |..++.+|+.++..+-.
T Consensus       168 v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~~G~~----~-~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          168 MTPMLLDALKSK-NARQRSECLLVIEYYITNAGIS----P-LKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHCSG----G-GGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCC----c-cccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            456666777888 9999999998888886443222    1 3467   9999999987 99999999999886644

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=82.08  E-value=47  Score=35.63  Aligned_cols=188  Identities=12%  Similarity=0.132  Sum_probs=108.3

Q ss_pred             HHHHHHhcC---Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch--
Q 036338          104 DIIRVAISK---NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ--  177 (408)
Q Consensus       104 ~Lv~~L~s~---~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~--  177 (408)
                      .++..+.+.   ++- |..|++.|..++..-  ..+.+.   .+++.++..|.+++ ..++..|+.+|.+++.  ..+  
T Consensus       459 ~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~---~~l~~l~~~L~d~~-~~V~~~A~~Al~~~~~--~~~~~  530 (960)
T 1wa5_C          459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLI---ELMPILATFLQTDE-YVVYTYAAITIEKILT--IRESN  530 (960)
T ss_dssp             HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHH---HHHHHHHHHTTCSC-HHHHHHHHHHHHHHTT--CBSCS
T ss_pred             HhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHHHH---HHHHHHHHHhCCCC-hhHHHHHHHHHHHHHh--ccccc
Confidence            345556665   555 888999999987652  122222   46788888887654 4556999999999875  211  


Q ss_pred             -----HHHHHHHhccCcccHHHHHHHHhcCCC---h--HHHHHHHHHHHHhhcC--cchhhHHhhhcChHHHHHHhcc--
Q 036338          178 -----QHLMNLILKRDQDCLNSLLLVLKQQES---V--DSRIESLRLLEFIAGD--ADSKVKIAERDGLLAETVKSLS--  243 (408)
Q Consensus       178 -----~~~~~~i~~~~~g~i~~Lv~lL~~~~~---~--~~~~~Aa~~L~~La~~--~~~~~~i~~~~g~i~~Lv~lL~--  243 (408)
                           +-.+..+.-.-...++.|+.++... +   .  ...+.+..+|..++..  ++... ..  ...++.|+..+.  
T Consensus       531 ~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~-~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~--~~l~~~L~~~l~~~  606 (960)
T 1wa5_C          531 TSPAFIFHKEDISNSTEILLKNLIALILKH-GSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LF--PQLLAQFIEIVTIM  606 (960)
T ss_dssp             SSCCBSSCGGGTTTTHHHHHHHHHHHHHTT-CCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GH--HHHHHHHHHHHHHH
T ss_pred             ccccccccHHHhhhhHHHHHHHHHHHHHhc-cCCCCcccccHHHHHHHHHHHHHHHHhhhh-HH--HHHHHHHHHHHHHH
Confidence                 1002223200134566777777764 1   1  1335666677665432  22222 11  124555555553  


Q ss_pred             --cCCCHHHHHHHHHHHHHhccC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 036338          244 --LDSDRRLIEASLSCLITISSS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLV  320 (408)
Q Consensus       244 --~~~~~~~~~~A~~aL~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L  320 (408)
                        ++.++........+|..+... ......-.+.-.+|.+...|...                     .....+.+..++
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~---------------------~~~~~~~~~~i~  665 (960)
T 1wa5_C          607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED---------------------IQEFIPYVFQII  665 (960)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT---------------------CTTTHHHHHHHH
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhh---------------------hHhhHHHHHHHH
Confidence              344667777788888877764 22223334556788888888753                     335666666666


Q ss_pred             HHHh
Q 036338          321 EILS  324 (408)
Q Consensus       321 ~~L~  324 (408)
                      ..+.
T Consensus       666 ~~l~  669 (960)
T 1wa5_C          666 AFVV  669 (960)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=80.48  E-value=0.069  Score=40.30  Aligned_cols=40  Identities=25%  Similarity=0.325  Sum_probs=26.7

Q ss_pred             ccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338           14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      ..||.|+..|. +   .-|+.+|..|=..+..  ...||.|++++.
T Consensus        33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~f~~--~a~CPdC~q~Le   72 (101)
T 2jne_A           33 LHCPQCQHVLD-Q---DNGHARCRSCGEFIEM--KALCPDCHQPLQ   72 (101)
T ss_dssp             CBCSSSCSBEE-E---ETTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred             ccCccCCCcce-e---cCCEEECccccchhhc--cccCcchhhHHH
Confidence            68999998775 2   2455558888332211  246999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	408
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	1e-19
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	9e-16
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	3e-12
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	7e-12
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	5e-10
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-07
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	5e-07
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	5e-05
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	7e-05
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	0.003

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 80.5 bits (198), Expect = 1e-19
 Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 2/76 (2%)

Query: 10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTL 69
           P +FRCPISL++MK PV + TG TY+R+SIQ+WLD+G+ TCP + + L      PN  L
Sbjct: 5  FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 70 QRLIQIWSDSVQHRVD 85
          + LI +W +   + ++
Sbjct: 65 KSLIALWCE--SNGIE 78

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.9 bits (170), Expect = 9e-16
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTL 69
          +P +    IS ++M+ P    +G+TYDR  I+  L    +  P T   L  ++ +PN  +
Sbjct: 4  IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 63

Query: 70 QRLIQIW 76
          + +I  +
Sbjct: 64 KEVIDAF 70

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 3e-12
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 4  DDLYITVPSFFRCPISLDVMKSPVSLCTG-VTYDRASIQRWLDSGNNTCPATMQVLQSKE 62
          ++ Y      F  PI   +M  PV L +  VT DR++I R L S + T P     L   +
Sbjct: 13 EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQ 71

Query: 63 FVPNRTLQRLIQIWSDSVQHRVDSSESA 90
            PN  L+  IQ W    + +  S  S+
Sbjct: 72 IRPNTELKEKIQRWLA--ERKQQSGPSS 97

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (143), Expect = 7e-12
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS--GNNTCPATMQVLQSKEFVPNR 67
          +     CPI L+++K PVS      + +  + + L+   G + CP     +  +    + 
Sbjct: 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77

Query: 68 TLQRLIQ 74
             +L++
Sbjct: 78 RFSQLVE 84

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 5e-10
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 5  DLYITVPS-FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF 63
          +LY  + S F  C I  +  K       G     + +  W +S    CP     ++  E 
Sbjct: 14 ELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 73

Query: 64 VP 65
          + 
Sbjct: 74 IV 75

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFV-PNRTLQRL 72
            C I   ++  PV       + R  I R L    + CP+        +   P ++   +
Sbjct: 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNI 83

Query: 73 I 73
          +
Sbjct: 84 L 84

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 5e-07
 Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 10 VPSFFRCPISLDVMKSPVSLCT-GVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRT 68
          +    RC    ++++ PV L      +    +   + +G   C         ++   NR 
Sbjct: 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVC---YTPAWIQDLKINRQ 75

Query: 69 LQRLIQIWSDSVQHRVDSSESA 90
          L  +IQ+ S  +++ +  +E +
Sbjct: 76 LDSMIQLCS-KLRNLLHDNELS 96

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (89), Expect = 5e-05
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 16 CPISLDVMK-SPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRT 68
          C IS  V +   +S  +   ++++ +++++       P T + L  +E V    
Sbjct: 3  CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 55

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 7e-05
 Identities = 9/40 (22%), Positives = 11/40 (27%), Gaps = 4/40 (10%)

Query: 13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCP 52
          F RC       K P  L    T     ++         CP
Sbjct: 6  FLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCP 41

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 0.003
 Identities = 9/54 (16%), Positives = 13/54 (24%), Gaps = 5/54 (9%)

Query: 15 RCPISLDVMKSP-----VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF 63
           CP              +    G T   + +      G   CP     L+   F
Sbjct: 5  GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	408
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.89
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.89
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.85
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.83
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.81
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.81
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.78
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.67
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.66
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.62
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.62
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.61
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.37
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.33
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.2
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.14
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.03
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.82
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.66
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.57
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.37
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.07
d1b3ua_	588	Constant regulatory domain of protein phosphatase	97.74
d1b3ua_	588	Constant regulatory domain of protein phosphatase	97.73
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.61
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.54
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.46
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.43
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.41
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.35
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.14
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.12
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.99
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.56
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.4
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.06
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	96.0
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	95.97
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	95.55
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.1
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	95.04
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	94.41
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	93.96
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	93.36
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	92.38
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	88.62
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	88.57
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	86.75
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	83.91
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	81.64
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	80.2

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=2.7e-24  Score=161.33  Aligned_cols=75  Identities=47%  Similarity=0.939  Sum_probs=70.9

Q ss_pred             CCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338            7 YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      ..++|++|.||||+++|+|||+++|||+|||+||++|+..+...||.|+.++...++.||..|+++|++|+++|+
T Consensus         2 ~peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~   76 (78)
T d1t1ha_           2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNG   76 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSC
T ss_pred             CCCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhC
Confidence            347999999999999999999999999999999999998777789999999999999999999999999999886

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=4.7e-24  Score=160.75  Aligned_cols=74  Identities=24%  Similarity=0.481  Sum_probs=70.2

Q ss_pred             CCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338            8 ITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ   81 (408)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~   81 (408)
                      .++|++|.||||+++|+|||+++|||+||+.||.+|+..++.+||.|++++...++.||..|+++|++|+.+|+
T Consensus         2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~   75 (80)
T d2c2la2           2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG   75 (80)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred             CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCC
Confidence            46899999999999999999999999999999999998877889999999988899999999999999998876

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.4e-21  Score=193.55  Aligned_cols=260  Identities=10%  Similarity=0.151  Sum_probs=211.3

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      ...|+.|++.|++.+.. +..|+..|..++.. +..+..++..+|+|+.|+.+|.+..+.+.++.|+.+|.+|+.  +++
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~-~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~--~~~   92 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH--HRE   92 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT--SHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC--Cch
Confidence            45699999999998888 99999999999875 566666655548899999999876645566999999999986  444


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcch-hhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADS-KVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      .  +..+.  +.|+++.|+++|+++ +.+++..|+++|.+|+.+.+. +..+.. .|+|++|+++|+++ +++++..+++
T Consensus        93 ~--~~~i~--~~g~i~~Li~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~i~~Lv~lL~~~-~~~~~~~a~~  165 (529)
T d1jdha_          93 G--LLAIF--KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT-NVKFLAITTD  165 (529)
T ss_dssp             H--HHHHH--HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCC-CHHHHHHHHH
T ss_pred             h--HHHHH--HCCCHHHHHHHhCCC-CHHHHHHHHHHHHHhhcccchhhhHHHh-cCCchHHHHHHHcc-ChHHHHHHHH
Confidence            4  56666  889999999999999 999999999999999987664 455555 89999999999987 8999999999


Q ss_pred             HHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHh
Q 036338          257 CLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQ  335 (408)
Q Consensus       257 aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  335 (408)
                      +|.+|+... .++..+.+.|++++|+.+|...                    ....+++.+..++.+++.+++++..++.
T Consensus       166 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--------------------~~~~~~~~~~~~l~~ls~~~~~~~~~~~  225 (529)
T d1jdha_         166 CLQILAYGNQESKLIILASGGPQALVNIMRTY--------------------TYEKLLWTTSRVLKVLSVCSSNKPAIVE  225 (529)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             HHHHHhhhhhHHHHHHHhcccchHHHHHHHhh--------------------hhHHHHHHHHHHHhhhhccccccchhhh
Confidence            999999754 4677777999999999999863                    3568899999999999999999999988


Q ss_pred             hcCchHHHHHHHHH------------------------------------------------------------HHHHHH
Q 036338          336 DAALLNGVVQKMLK------------------------------------------------------------TAQEAV  355 (408)
Q Consensus       336 ~~g~i~~lv~~l~~------------------------------------------------------------~~~~~~  355 (408)
                      . |+++.|+.++..                                                            +.+..+
T Consensus       226 ~-g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  304 (529)
T d1jdha_         226 A-GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV  304 (529)
T ss_dssp             T-THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             h-hhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHH
Confidence            5 778877764321                                                            234455


Q ss_pred             HhcCcHHHHHHHHhh-cCCHHHHHHHHHHHHHHhh
Q 036338          356 SSSNVLTKILLLMQS-NCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       356 ~~~g~~~~Ll~ll~~-~~~~~~k~~A~~lL~~l~~  389 (408)
                      .+.|+++.|+.++.. ...+..++.|..+|+.+..
T Consensus       305 ~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~  339 (529)
T d1jdha_         305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccc
Confidence            678888888877753 4456677778777777765

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.7e-20  Score=177.80  Aligned_cols=259  Identities=14%  Similarity=0.175  Sum_probs=204.8

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH  179 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~  179 (408)
                      .||.||+.|++++++ |..|++.|.+++.+++++|..|.+. |+||.|+++|++++ ..+++.|+++|.+|+.  ++++.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~--~~~~~   78 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPN-QNVQQAAAGALRNLVF--RSTTN   78 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHT-THHHHHHHHTTSSC-HHHHHHHHHHHHHHHS--SCHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CcHHHHHHHHCCCC-HHHHHHHHHHHHHHHc--CCHHH
Confidence            378999999999999 9999999999999999999999999 99999999999877 3345999999999986  44443


Q ss_pred             HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcch-----------------------------------
Q 036338          180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADS-----------------------------------  224 (408)
Q Consensus       180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~-----------------------------------  224 (408)
                       +..+.  +.|+++.|+.++.+..+.+++..|+++|.+++..+..                                   
T Consensus        79 -~~~i~--~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  155 (457)
T d1xm9a1          79 -KLETR--RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV  155 (457)
T ss_dssp             -HHHHH--HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred             -HHHHH--HCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccc
Confidence             67776  8999999999997644778888888888888754322                                   


Q ss_pred             ---------------------hhHHhhhcChHHHHHHhcc----------------------------------------
Q 036338          225 ---------------------KVKIAERDGLLAETVKSLS----------------------------------------  243 (408)
Q Consensus       225 ---------------------~~~i~~~~g~i~~Lv~lL~----------------------------------------  243 (408)
                                           +..+....|+++.|+.+++                                        
T Consensus       156 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  235 (457)
T d1xm9a1         156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY  235 (457)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Confidence                                 1122222466777766542                                        


Q ss_pred             ----------------------------------------------------------cCCCHHHHHHHHHHHHHhccCc
Q 036338          244 ----------------------------------------------------------LDSDRRLIEASLSCLITISSSK  265 (408)
Q Consensus       244 ----------------------------------------------------------~~~~~~~~~~A~~aL~~Ls~~~  265 (408)
                                                                                ...++..++.+.+++.+++...
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~  315 (457)
T d1xm9a1         236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK  315 (457)
T ss_dssp             TC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred             hhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhcc
Confidence                                                                      1113456677788888887654


Q ss_pred             c------hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCc
Q 036338          266 R------AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAAL  339 (408)
Q Consensus       266 ~------n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~  339 (408)
                      .      .+..+.+.|+++.|+.+|.++                     +..+++.++.+|.+|+.+++++..+..  ++
T Consensus       316 ~~~~~~~~~~~~~~~~~l~~L~~~l~~~---------------------~~~v~~~a~~~l~~La~~~~~~~~i~~--~~  372 (457)
T d1xm9a1         316 GLMSSGMSQLIGLKEKGLPQIARLLQSG---------------------NSDVVRSGASLLSNMSRHPLLHRVMGN--QV  372 (457)
T ss_dssp             SSHHHHHHHHHHTTSCCHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHHTSGGGHHHHHH--HT
T ss_pred             ccchHHHHHHHHHHcCChHHHHhhhcCc---------------------cHHHHHHHHHHHHHHhhChhHHHHHHH--hh
Confidence            3      344555789999999999864                     789999999999999999999988865  56


Q ss_pred             hHHHHHHHHH---------------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          340 LNGVVQKMLK---------------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       340 i~~lv~~l~~---------------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      ++.++.+|..                           +.++.+++.|+++.|+.++.+..++.+++.|..+|..|..
T Consensus       373 i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~  449 (457)
T d1xm9a1         373 FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence            8888875421                           4667778899999999999988888899999888888765

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.3e-22  Score=153.98  Aligned_cols=77  Identities=32%  Similarity=0.414  Sum_probs=69.7

Q ss_pred             CcCCCCCCcccccCccccCCCceecCCC-CcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcCC
Q 036338            5 DLYITVPSFFRCPISLDVMKSPVSLCTG-VTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQH   82 (408)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~cg-h~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~~   82 (408)
                      ....++|++|.||||+++|+|||+++|| |+|||.||.+|+.. +.+||.|++++...+++||..|++.|+.|+.++..
T Consensus        14 ~~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~~   91 (98)
T d1wgma_          14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ   91 (98)
T ss_dssp             CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred             hhhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCcccccccccchhhcchHHHHHHHHHHHHHHHH
Confidence            3456799999999999999999999866 69999999999985 55799999999999999999999999999998874

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.9e-20  Score=184.26  Aligned_cols=258  Identities=17%  Similarity=0.220  Sum_probs=214.8

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      .+.++.|++.|++++++ +..|++.|.+++.+++..+..+.+. |+||.|+.+|++++ ..+++.++.+|.+++.  .+.
T Consensus       100 ~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~-g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~--~~~  175 (529)
T d1jdha_         100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLNKTN-VKFLAITTDCLQILAY--GNQ  175 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHH-THHHHHHHGGGCCC-HHHHHHHHHHHHHHHT--TCH
T ss_pred             CCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhc-CCchHHHHHHHccC-hHHHHHHHHHHHHHhh--hhh
Confidence            35689999999999888 9999999999999999999999999 99999999998876 3445999999999986  444


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                      +. +..+.  ..|+++.|+.+|+.......+..++.++.+++.+++++..+.+ .|++++|+.++.++ +.+++..++++
T Consensus       176 ~~-~~~~~--~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~-~g~~~~L~~ll~~~-~~~~~~~a~~~  250 (529)
T d1jdha_         176 ES-KLIIL--ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDP-SQRLVQNCLWT  250 (529)
T ss_dssp             HH-HHHHH--HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSS-CHHHHHHHHHH
T ss_pred             HH-HHHHH--hcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhh-hhhhhhHHHHhccc-chhhhhhhhhH
Confidence            43 55665  8899999999998763567889999999999999999999988 89999999999987 88999999999


Q ss_pred             HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhh
Q 036338          258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQD  336 (408)
Q Consensus       258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~  336 (408)
                      |.+++.....  .....|+++.|+.++.+.                     +..+++.|+.+|.+|+. +++++..+.+ 
T Consensus       251 l~~ls~~~~~--~~~~~~~i~~Lv~ll~~~---------------------~~~~~~~a~~~L~~l~~~~~~~~~~i~~-  306 (529)
T d1jdha_         251 LRNLSDAATK--QEGMEGLLGTLVQLLGSD---------------------DINVVTCAAGILSNLTCNNYKNKMMVCQ-  306 (529)
T ss_dssp             HHHHHTTCTT--CSCCHHHHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHTTTCHHHHHHHHH-
T ss_pred             HHhccccccc--hhhhhhcchhhhhhcccc---------------------cHHHHHHHHHHHHhhccchhHHHHHHHH-
Confidence            9999865443  234578999999999864                     78899999999999986 5677777766 


Q ss_pred             cCchHHHHHHHHH--------------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          337 AALLNGVVQKMLK--------------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       337 ~g~i~~lv~~l~~--------------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      .++++.++..+.+                          ..+..+...|+++.|+.++........++.+..+|+.+..
T Consensus       307 ~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~  385 (529)
T d1jdha_         307 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL  385 (529)
T ss_dssp             TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcch
Confidence            4889999987755                          1333455789999999999876666667777777777765

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=7.8e-19  Score=171.47  Aligned_cols=259  Identities=13%  Similarity=0.165  Sum_probs=201.1

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChh-hhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDE-NKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED  176 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~-~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~  176 (408)
                      ...|+.+|+.+.+++.+ +..|+..|+.+...+.. ..+.+++. |++|.|+++|++.++..++..|+++|.+++.  .+
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~--~~   88 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRA-GLIPKFVSFLGKTDCSPIQFESAWALTNIAS--GT   88 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHT-TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHT--SC
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC-CCHHHHHHHHccCCCHHHHHHHHHHHHHHhc--CC
Confidence            45688999999999998 99999999988653222 24678898 9999999999766544556999999999986  45


Q ss_pred             hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc-hhhHHhhhcChHHHHHH---------------
Q 036338          177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD-SKVKIAERDGLLAETVK---------------  240 (408)
Q Consensus       177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~-~~~~i~~~~g~i~~Lv~---------------  240 (408)
                      ++. +..+.  +.|+++.|+.+|.++ +.+.++.|+++|.+++.+.+ .+..+.. .|+++.|+.               
T Consensus        89 ~~~-~~~i~--~~~~i~~l~~~L~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i~~-~~~~~~l~~~l~~~~~~~~~~~~~  163 (434)
T d1q1sc_          89 SEQ-TKAVV--DGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYL  163 (434)
T ss_dssp             HHH-HHHHH--HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHHHH
T ss_pred             hhh-hhHhh--hccchhhhhhccccC-CHHHHHHHHHHHHHHhccchHHHHHHHH-hhhhhHHHHHHHhcccccchHHHH
Confidence            444 55666  899999999999998 99999999999999986543 3433333 444444444               


Q ss_pred             --------------------------------hcccCCCHHHHHHHHHHHHHhccCcch-HHHHHhcCcHHHHHHHhccC
Q 036338          241 --------------------------------SLSLDSDRRLIEASLSCLITISSSKRA-KTKLINHKLITELGKLITDG  287 (408)
Q Consensus       241 --------------------------------lL~~~~~~~~~~~A~~aL~~Ls~~~~n-~~~~~~~G~i~~Lv~lL~~~  287 (408)
                                                      +++++ +++++..++++|.+|+..+.. +..+.+.|+++.|+.++.++
T Consensus       164 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~  242 (434)
T d1q1sc_         164 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT  242 (434)
T ss_dssp             HHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred             HHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhcc-ccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccc
Confidence                                            44443 678899999999999987654 44555899999999999864


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhhcCchHHHHHHHHH-----------------
Q 036338          288 HNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQDAALLNGVVQKMLK-----------------  349 (408)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g~i~~lv~~l~~-----------------  349 (408)
                                           +..++..|+.+|.+++. +++.+..+... |+++.++++|..                 
T Consensus       243 ---------------------~~~~~~~al~~l~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~v~~~a~~~L~~l~  300 (434)
T d1q1sc_         243 ---------------------ELPIVTPALRAIGNIVTGTDEQTQKVIDA-GALAVFPSLLTNPKTNIQKEATWTMSNIT  300 (434)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TGGGGHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred             ---------------------hhhhhhchhhhhhhHHhhhhHHHHHHHhc-cccchHHHhhcccchhhhHHHHHHHhhhc
Confidence                                 78999999999999987 45666667664 889888885432                 


Q ss_pred             ----HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          350 ----TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       350 ----~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                          +....+.+.|+++.++.++... +...|..|..++..+..
T Consensus       301 ~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~  343 (434)
T d1q1sc_         301 AGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTS  343 (434)
T ss_dssp             TSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHh
Confidence                3455567899999999998766 46688888877776654

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.8e-18  Score=167.45  Aligned_cols=259  Identities=12%  Similarity=0.211  Sum_probs=202.2

Q ss_pred             HHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338          100 DEVKDIIRVAISK-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus       100 ~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      +.++.|++.|++. +.+ |..|++.|.+++..++..+..+.+. |++|.|+.+|.+++ ..+++.|+++|.|++.  ++.
T Consensus        56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~-~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~--~~~  131 (434)
T d1q1sc_          56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG-GAIPAFISLLASPH-AHISEQAVWALGNIAG--DGS  131 (434)
T ss_dssp             TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHHT--TCH
T ss_pred             CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhc-cchhhhhhccccCC-HHHHHHHHHHHHHHhc--cch
Confidence            4578899999755 455 8899999999999888899999999 99999999998876 3345999999999985  222


Q ss_pred             HHHHHHHh-------------------------------------c--------cCcccHHHHHHHHhcCCChHHHHHHH
Q 036338          178 QHLMNLIL-------------------------------------K--------RDQDCLNSLLLVLKQQESVDSRIESL  212 (408)
Q Consensus       178 ~~~~~~i~-------------------------------------~--------~~~g~i~~Lv~lL~~~~~~~~~~~Aa  212 (408)
                      +. +..+.                                     .        ...++++.|+.++.++ +.+.+..++
T Consensus       132 ~~-~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~~a~  209 (434)
T d1q1sc_         132 AF-RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSC  209 (434)
T ss_dssp             HH-HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHH
T ss_pred             HH-HHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhcc-ccchhhhHH
Confidence            21 11111                                     0        0124567778888888 899999999


Q ss_pred             HHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hHHHHHhcCcHHHHHHHhccCCCCC
Q 036338          213 RLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR-AKTKLINHKLITELGKLITDGHNGN  291 (408)
Q Consensus       213 ~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~G~i~~Lv~lL~~~~~~~  291 (408)
                      ++|.+|+..++....+....|+++.|+++++++ +.+++..|+++|.+++.+.+ .+..+++.|+++.|+.+|+++    
T Consensus       210 ~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~----  284 (434)
T d1q1sc_         210 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP----  284 (434)
T ss_dssp             HHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS----
T ss_pred             hhhcccchhhhhhHHHHhhcccchhcccccccc-hhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhccc----
Confidence            999999987755544444489999999999987 89999999999999998654 567778999999999999865    


Q ss_pred             CCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHH---------------------
Q 036338          292 GSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQGRMEICQDAALLNGVVQKMLK---------------------  349 (408)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~---------------------  349 (408)
                                       +..+++.|+.+|.+|+.. ++.+..+... |+++.+++.+..                     
T Consensus       285 -----------------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~  346 (434)
T d1q1sc_         285 -----------------KTNIQKEATWTMSNITAGRQDQIQQVVNH-GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT  346 (434)
T ss_dssp             -----------------SHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred             -----------------chhhhHHHHHHHhhhccccchhHHHHhhh-hhHHHHHHHHhccChHHHHHHHHHHHHHHhcCC
Confidence                             788999999999999974 5555556554 899999996544                     


Q ss_pred             -HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036338          350 -TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFR  388 (408)
Q Consensus       350 -~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~  388 (408)
                       +....+.+.|+++.|+.++++. .+..+..+..+|..+-
T Consensus       347 ~~~~~~l~~~~~i~~L~~ll~~~-d~~~~~~~l~~l~~ll  385 (434)
T d1q1sc_         347 VEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIF  385 (434)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTSS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence             3344567899999999999765 4556777765555443

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=3.1e-18  Score=171.45  Aligned_cols=259  Identities=13%  Similarity=0.144  Sum_probs=208.7

Q ss_pred             HHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338          100 DEVKDIIRVAISK-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus       100 ~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      +.++.|+..++.. +.+ +..|++.|.+++..++.....+.+. |+++.++.+|.+++ .++.+.|+++|.||+.  .+.
T Consensus       119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~-g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~--~~~  194 (503)
T d1wa5b_         119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA-DAVPLFIQLLYTGS-VEVKEQAIWALGNVAG--DST  194 (503)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TCHHHHHHHHHHCC-HHHHHHHHHHHHHHHT--TCH
T ss_pred             CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhC-CChHHHHHHhcCCC-hhHHHHHHHHHHHHhh--hhH
Confidence            4578899998865 445 8899999999998888888889998 99999999999877 3345999999999986  333


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                      . .+..+.  ..|+++.|+.++.+. +...+..++++|.+++...+.........++++.|+.++.+. +.+.+..++++
T Consensus       195 ~-~r~~l~--~~~~~~~L~~ll~~~-~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~-d~~~~~~~~~~  269 (503)
T d1wa5b_         195 D-YRDYVL--QCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWA  269 (503)
T ss_dssp             H-HHHHHH--HTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHH
T ss_pred             H-HHHHHH--hhcccccchhhcccC-CHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence            3 377776  899999999999998 999999999999999987544333332368999999999987 89999999999


Q ss_pred             HHHhccCcc-hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhh
Q 036338          258 LITISSSKR-AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQD  336 (408)
Q Consensus       258 L~~Ls~~~~-n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  336 (408)
                      |.+|+.... ....+++.|+++.|+.++.++                     +..+...|+.+|.+++...+.....+..
T Consensus       270 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~---------------------~~~v~~~al~~l~nl~~~~~~~~~~~~~  328 (503)
T d1wa5b_         270 ISYLSDGPQEAIQAVIDVRIPKRLVELLSHE---------------------STLVQTPALRAVGNIVTGNDLQTQVVIN  328 (503)
T ss_dssp             HHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS---------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHhhccCCchhhhhhhhhhhhhhhhhcccCC---------------------chhhhhhHHHHHHHHHHHHHHHHHhhhc
Confidence            999998765 456677999999999999864                     7899999999999999865555555544


Q ss_pred             cCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          337 AALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       337 ~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                      .|+++.+..++..                     .....+++.|+++.++.++.+.. ..+|..|..+|..+..
T Consensus       329 ~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~-~~v~~~a~~~l~nl~~  401 (503)
T d1wa5b_         329 AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE-YKTKKEACWAISNASS  401 (503)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCC-hhHHHHHHHHHHHHHh
Confidence            5888988874322                     45566778999999999998765 5567666666665543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.5e-18  Score=155.61  Aligned_cols=190  Identities=14%  Similarity=0.145  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHH-HhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHH
Q 036338          116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVE-ILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNS  194 (408)
Q Consensus       116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~-lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~  194 (408)
                      +..|+..|..++. +..++..+.+. |++++|+. +|.+++ ..++..|+.+|.+++.  +++. .+..+.  +.|+++.
T Consensus        34 ~~~Al~~L~~L~~-~~d~a~~l~~~-gg~~~ll~~ll~s~~-~~vr~~A~~~L~~l~~--~~~~-~~~~~~--~~~~i~~  105 (264)
T d1xqra1          34 REGALELLADLCE-NMDNAADFCQL-SGMHLLVGRYLEAGA-AGLRWRAAQLIGTCSQ--NVAA-IQEQVL--GLGALRK  105 (264)
T ss_dssp             HHHHHHHHHHHHT-SHHHHHHHHHT-THHHHHHHTTTTCSS-HHHHHHHHHHHHHHHT--TCHH-HHHHHH--HTTHHHH
T ss_pred             HHHHHHHHHHHHc-CHHHHHHHHHc-CCHHHHHHHHhCCCC-HHHHHHHHHHHHHHHH--HHHH-HHHHHH--HcCchHH
Confidence            8889999999995 57788899999 99999987 555555 4455999999999997  4444 366666  8899999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHhhcCcc-hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc-CcchHHHHH
Q 036338          195 LLLVLKQQESVDSRIESLRLLEFIAGDAD-SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS-SKRAKTKLI  272 (408)
Q Consensus       195 Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~-~~~n~~~~~  272 (408)
                      |+.+|.+..+.+++..++++|.+++.+.+ ++..+.. .|+++.|+++|+++ +..++..++++|++|+. ++.++..++
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~~gi~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~  183 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLC  183 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHH-hhhhhHHHHHHhcC-chHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            99999765378899999999999997765 5556665 89999999999997 99999999999999986 567889999


Q ss_pred             hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhh
Q 036338          273 NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQD  336 (408)
Q Consensus       273 ~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~  336 (408)
                      ++|+++.|+.+|.++                     ++.+++.|+.+|.+|+. +++.+..+...
T Consensus       184 ~~~~v~~L~~lL~~~---------------------~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         184 SMGMVQQLVALVRTE---------------------HSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             HTTHHHHHHHHHTSC---------------------CSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             HhhhHHHHHHHHcCC---------------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            999999999999864                     88999999999999997 56666666543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.9e-17  Score=165.64  Aligned_cols=254  Identities=10%  Similarity=0.162  Sum_probs=205.1

Q ss_pred             HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338          100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ  178 (408)
Q Consensus       100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~  178 (408)
                      +.++.++..|.+++.+ +..|++.|.+++.+++.+|..+.+. |+++.|+.++.+.. ..+.+.++++|.+++.  +..+
T Consensus       162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~-~~~~~L~~ll~~~~-~~~~~~~~~~l~nl~~--~~~~  237 (503)
T d1wa5b_         162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-NAMEPILGLFNSNK-PSLIRTATWTLSNLCR--GKKP  237 (503)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHGGGSCC-HHHHHHHHHHHHHHHC--CSSS
T ss_pred             CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhh-cccccchhhcccCC-HHHHHHHHHHHHHHhc--CCcc
Confidence            3477888899998888 9999999999999999999999999 99999999998776 3355899999999986  3322


Q ss_pred             HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcch-hhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADS-KVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                      . .....  ..++++.|+.++.+. +.+.+..++++|.+++...+. ...+.. .|+++.|+.++.++ +..++..|+.+
T Consensus       238 ~-~~~~~--~~~~l~~l~~~l~~~-d~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~-~~~v~~~al~~  311 (503)
T d1wa5b_         238 Q-PDWSV--VSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHE-STLVQTPALRA  311 (503)
T ss_dssp             C-CCHHH--HGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCS-CHHHHHHHHHH
T ss_pred             c-hHHHH--HHHHHHHHHHHhccc-cHHHHHHHHHHHHhhccCCchhhhhhhh-hhhhhhhhhcccCC-chhhhhhHHHH
Confidence            1 22222  468899999999998 999999999999999986654 455555 89999999999987 89999999999


Q ss_pred             HHHhccCcchH-HHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHh
Q 036338          258 LITISSSKRAK-TKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQ  335 (408)
Q Consensus       258 L~~Ls~~~~n~-~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~  335 (408)
                      |.+++.+.... ..+++.|+++.|..++.++                     ++.++..++++|.|++. +++....+..
T Consensus       312 l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~---------------------~~~i~~~~~~~l~nl~~~~~~~~~~i~~  370 (503)
T d1wa5b_         312 VGNIVTGNDLQTQVVINAGVLPALRLLLSSP---------------------KENIKKEACWTISNITAGNTEQIQAVID  370 (503)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHhcCC---------------------CHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            99999876644 4555899999999999864                     78899999999999987 4566666665


Q ss_pred             hcCchHHHHHHHHH------------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 036338          336 DAALLNGVVQKMLK------------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKI  386 (408)
Q Consensus       336 ~~g~i~~lv~~l~~------------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~  386 (408)
                       .++++.+++.|..                        +....+++.|+++.|+.+|.... +.....+-.+|..
T Consensus       371 -~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d-~~~~~~~L~~l~~  443 (503)
T d1wa5b_         371 -ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD-NRIIEVTLDALEN  443 (503)
T ss_dssp             -TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCC-HHHHHHHHHHHHH
T ss_pred             -ccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence             5999999997655                        23344578999999999997654 5556665554443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.7e-16  Score=153.02  Aligned_cols=193  Identities=13%  Similarity=0.103  Sum_probs=149.4

Q ss_pred             ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc-
Q 036338          142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG-  220 (408)
Q Consensus       142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~-  220 (408)
                      +.||.||.+|++++ +.++..|+.+|.||+.  .+++. ++.|.  +.|+||+|+++|+++ +.++|..|+++|.+|+. 
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~--~~~~~-~~~i~--~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~L~~~   74 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCF--QDESA-KQQVY--QLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFR   74 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTS--SCSSH-HHHHH--HTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSS
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHc--CCHHH-HHHHH--HCCcHHHHHHHHCCC-CHHHHHHHHHHHHHHHcC
Confidence            67999999999887 3345999999999996  44433 77777  899999999999999 99999999999999995 


Q ss_pred             CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCC
Q 036338          221 DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNG  300 (408)
Q Consensus       221 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~  300 (408)
                      +++++..+.. .|+++.|++++....++.++..|+++|++|+....++......|. +.++..+..+..    +. ....
T Consensus        75 ~~~~~~~i~~-~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~----~~-~~~~  147 (457)
T d1xm9a1          75 STTNKLETRR-QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADAL-PVLADRVIIPFS----GW-CDGN  147 (457)
T ss_dssp             CHHHHHHHHH-TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHH-HHHHHHTTHHHH----TC-C---
T ss_pred             CHHHHHHHHH-CCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhccc-HHHHHHHHhhhh----hh-hcch
Confidence            4568888887 899999999998766889999999999999999888877777554 455444421100    00 0000


Q ss_pred             CCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHH
Q 036338          301 NGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKML  348 (408)
Q Consensus       301 ~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~  348 (408)
                      ........+..+++.++.+|.+++.+++++..+....|+++.++.++.
T Consensus       148 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~  195 (457)
T d1xm9a1         148 SNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQ  195 (457)
T ss_dssp             ------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHH
T ss_pred             hhhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHh
Confidence            000111346788999999999999999999999887788999888654

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.9e-17  Score=124.60  Aligned_cols=67  Identities=18%  Similarity=0.377  Sum_probs=55.4

Q ss_pred             CCCCCCc----ccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCc-ccHHHHHHH
Q 036338            7 YITVPSF----FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFV-PNRTLQRLI   73 (408)
Q Consensus         7 ~~~~~~~----~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~-~n~~l~~~I   73 (408)
                      ..++|++    +.||||.++|.|||+++|||+||+.||++|++.+...||.||.++...++. |...+.+.+
T Consensus        13 ~~d~~~d~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          13 AVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL   84 (86)
T ss_dssp             SSCCCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred             cccchhhhccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence            3455554    589999999999999999999999999999987777899999999877764 565555543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.3e-17  Score=131.34  Aligned_cols=69  Identities=17%  Similarity=0.420  Sum_probs=60.1

Q ss_pred             CCCcccccCccccCCCceecCCCCcccHhhHHHHHhcC--CCCCCCcccccCCCCCcccHHHHHHHHHHHH
Q 036338           10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSG--NNTCPATMQVLQSKEFVPNRTLQRLIQIWSD   78 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~--~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~   78 (408)
                      +.+.+.||||.++|.+||+++|||+||+.||.+|+...  ...||.|+.++...++.+|..++++|+++..
T Consensus        18 l~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~   88 (103)
T d1jm7a_          18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (103)
T ss_dssp             HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             cccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence            34568999999999999999999999999999999753  3579999999998999999888887777653

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5e-17  Score=126.40  Aligned_cols=67  Identities=19%  Similarity=0.416  Sum_probs=59.9

Q ss_pred             CCCcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHh
Q 036338           10 VPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDS   79 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~   79 (408)
                      +++.+.||||.++|.|||++ +|||+||+.||.+|+..   .||.|+.++...++.+|..++.+|+.+...
T Consensus        19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~   86 (97)
T d1jm7b_          19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLKINRQLDSMIQLCSKL   86 (97)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred             hhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCchhhCcccHHHHHHHHHHHHH
Confidence            46778999999999999986 79999999999999863   499999999889999999999999887653

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=3.9e-17  Score=113.28  Aligned_cols=52  Identities=21%  Similarity=0.365  Sum_probs=46.5

Q ss_pred             ccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCccc
Q 036338           14 FRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN   66 (408)
Q Consensus        14 ~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n   66 (408)
                      +.||||+++|+|||++ .|||+||++||.+|++. +.+||.||++++..+++|.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhceeC
Confidence            5799999999999988 59999999999999986 4579999999988888764

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.6e-14  Score=132.56  Aligned_cols=161  Identities=12%  Similarity=0.127  Sum_probs=137.1

Q ss_pred             HHHHHHHH-HHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338          100 DEVKDIIR-VAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus       100 ~~i~~Lv~-~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      +.++.++. .+.+++.+ +..|++.|..++..++..+..+.+. |++|.|+.+|.+..+..+++.++.+|.+++.  +.+
T Consensus        58 gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~-~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~--~~~  134 (264)
T d1xqra1          58 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL-GALRKLLRLLDRDACDTVRVKALFAISCLVR--EQE  134 (264)
T ss_dssp             THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHCSCHHHHHHHHHHHHHHHT--TCH
T ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHhhcCCCHHHHHHHHHHHHHHhc--cch
Confidence            45667775 56677777 9999999999999999999999999 9999999999876545566999999999997  454


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD-ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS  256 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~  256 (408)
                      +. +..+.  ..|+++.|+.+|+++ +..++..++++|.+++.. ++.+..+.. .|+++.|+.+|+++ ++++++.|++
T Consensus       135 ~~-~~~~~--~~~gi~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~v~~L~~lL~~~-~~~~~~~a~~  208 (264)
T d1xqra1         135 AG-LLQFL--RLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGMVQQLVALVRTE-HSPFHEHVLG  208 (264)
T ss_dssp             HH-HHHHH--HTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTHHHHHHHHHTSC-CSTHHHHHHH
T ss_pred             hh-HHHHH--HhhhhhHHHHHHhcC-chHHHHHHHHHHHHHHhccHHHHHHHHH-hhhHHHHHHHHcCC-CHHHHHHHHH
Confidence            43 55565  889999999999999 999999999999999864 567777776 89999999999987 8899999999


Q ss_pred             HHHHhccCcchHH
Q 036338          257 CLITISSSKRAKT  269 (408)
Q Consensus       257 aL~~Ls~~~~n~~  269 (408)
                      +|.+|+....+..
T Consensus       209 aL~~L~~~~~~~~  221 (264)
T d1xqra1         209 ALCSLVTDFPQGV  221 (264)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHHhcCHHHH
Confidence            9999998765443

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.8e-14  Score=107.03  Aligned_cols=49  Identities=18%  Similarity=0.256  Sum_probs=44.7

Q ss_pred             ccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCC
Q 036338           14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE   62 (408)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~   62 (408)
                      ..||||.+.++|||+++|||+||+.||.+|+..+...||.||+.+...+
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            4699999999999999999999999999999877778999999987644

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.1e-14  Score=96.86  Aligned_cols=50  Identities=20%  Similarity=0.217  Sum_probs=42.1

Q ss_pred             CcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc
Q 036338           12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP   65 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~   65 (408)
                      +.+.||||++.|+||++++|||+||+.||++|    ...||.||++++...-.|
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~   54 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTP   54 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCC
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCCC
Confidence            34689999999999999999999999999865    456999999887654433

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.3e-13  Score=96.92  Aligned_cols=52  Identities=19%  Similarity=0.307  Sum_probs=42.8

Q ss_pred             CcccccCccccCCC-c----eecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCC
Q 036338           12 SFFRCPISLDVMKS-P----VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF   63 (408)
Q Consensus        12 ~~~~Cpi~~~~~~d-P----v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l   63 (408)
                      ++..||||++.+.. |    ++++|||+||+.||.+|+..+...||.||+++...++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            46789999986533 2    5668999999999999998777789999999876654

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.20  E-value=3.3e-12  Score=91.72  Aligned_cols=44  Identities=30%  Similarity=0.507  Sum_probs=38.9

Q ss_pred             cccCccccCCCcee-cCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338           15 RCPISLDVMKSPVS-LCTGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        15 ~Cpi~~~~~~dPv~-~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      .||||.+.|.+|++ ++|||+||..||.+|++. +..||.||.++.
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~   51 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE   51 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred             CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence            39999999999866 699999999999999986 567999998764

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=8.1e-12  Score=84.50  Aligned_cols=46  Identities=20%  Similarity=0.351  Sum_probs=39.0

Q ss_pred             cccCccccCCC----ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           15 RCPISLDVMKS----PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        15 ~Cpi~~~~~~d----Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      -||||.+.|.+    +++++|||+||+.||.+|+..++..||.||+++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            49999999865    34458999999999999998767789999998864

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.03  E-value=6.6e-11  Score=80.77  Aligned_cols=48  Identities=21%  Similarity=0.463  Sum_probs=39.8

Q ss_pred             CCCcccccCccccCCC---ceec-CCCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338           10 VPSFFRCPISLDVMKS---PVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVL   58 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~d---Pv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l   58 (408)
                      +.++..||||++.|.+   .+++ +|||.|+..||.+|++. +.+||.||.++
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence            4566779999999986   3445 59999999999999986 56899999864

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1.3e-09  Score=86.27  Aligned_cols=51  Identities=12%  Similarity=0.194  Sum_probs=40.5

Q ss_pred             CCCcccccCccccCCCc------------------eecCCCCcccHhhHHHHHhcC----CCCCCCcccccCC
Q 036338           10 VPSFFRCPISLDVMKSP------------------VSLCTGVTYDRASIQRWLDSG----NNTCPATMQVLQS   60 (408)
Q Consensus        10 ~~~~~~Cpi~~~~~~dP------------------v~~~cgh~f~r~cI~~~~~~~----~~~CP~~~~~l~~   60 (408)
                      .+.+..|+||.+.|.++                  .+++|||.|+..||.+|+...    +.+||.||..+..
T Consensus        22 ~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             ccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            34456799999998764                  356899999999999999753    4579999987643

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.66  E-value=8.7e-09  Score=71.43  Aligned_cols=49  Identities=18%  Similarity=0.276  Sum_probs=41.7

Q ss_pred             CCcccccCccccCCCceecCCC-----CcccHhhHHHHHhc-CCCCCCCcccccC
Q 036338           11 PSFFRCPISLDVMKSPVSLCTG-----VTYDRASIQRWLDS-GNNTCPATMQVLQ   59 (408)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~cg-----h~f~r~cI~~~~~~-~~~~CP~~~~~l~   59 (408)
                      .+...|+||++.+.++.+.+|+     |.|.+.||.+|+.. ++.+||.|+.+++
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            3556899999999999887764     99999999999965 5678999998875

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.7e-08  Score=75.72  Aligned_cols=44  Identities=18%  Similarity=0.402  Sum_probs=36.4

Q ss_pred             cccCccccCCC------------------ceecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338           15 RCPISLDVMKS------------------PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ   59 (408)
Q Consensus        15 ~Cpi~~~~~~d------------------Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~   59 (408)
                      .|+||.+.|.+                  +++++|||.|+..||.+|++. +.+||.||+++.
T Consensus        23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~   84 (88)
T d3dplr1          23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE   84 (88)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-CCcCCCCCCccc
Confidence            49999888876                  234589999999999999986 567999998764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=1.9e-05  Score=69.87  Aligned_cols=130  Identities=12%  Similarity=0.008  Sum_probs=91.2

Q ss_pred             HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHH
Q 036338          102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHL  180 (408)
Q Consensus       102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~  180 (408)
                      ...|++.|.+.++. |..|+..|..+..           . .+++.|+.+|++.+ ..+...|+.+|..+..  ....  
T Consensus        21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~-~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~--~~~~--   83 (276)
T d1oyza_          21 DDELFRLLDDHNSLKRISSARVLQLRGG-----------Q-DAVRLAIEFCSDKN-YIRRDIGAFILGQIKI--CKKC--   83 (276)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------H-HHHHHHHHHHTCSS-HHHHHHHHHHHHHSCC--CTTT--
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------H-hHHHHHHHHHcCCC-HHHHHHHHHHHHHhcc--cccc--
Confidence            45688899988888 9999999876632           1 67899999998876 3344889999988864  2211  


Q ss_pred             HHHHhccCcccHHHHHHH-HhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338          181 MNLILKRDQDCLNSLLLV-LKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI  259 (408)
Q Consensus       181 ~~~i~~~~~g~i~~Lv~l-L~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~  259 (408)
                      ..       ..++.+... +++. +..++..|+.+|.++.......    . ...++.+...+.+. ++.++..|+.++.
T Consensus        84 ~~-------~~~~~l~~~~l~d~-~~~vr~~a~~aL~~~~~~~~~~----~-~~~~~~l~~~~~d~-~~~vr~~a~~~l~  149 (276)
T d1oyza_          84 ED-------NVFNILNNMALNDK-SACVRATAIESTAQRCKKNPIY----S-PKIVEQSQITAFDK-STNVRRATAFAIS  149 (276)
T ss_dssp             HH-------HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGGG----H-HHHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             cc-------chHHHHHHHHhcCC-ChhHHHHHHHHHHHHccccchh----h-HHHHHHHHHHhcCc-chHHHHHHHHHHh
Confidence            11       123344444 4556 8999999999999987543211    1 34577888888876 8888888888877


Q ss_pred             Hhc
Q 036338          260 TIS  262 (408)
Q Consensus       260 ~Ls  262 (408)
                      ...
T Consensus       150 ~~~  152 (276)
T d1oyza_         150 VIN  152 (276)
T ss_dssp             TC-
T ss_pred             hcc
Confidence            653

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=5.6e-07  Score=68.01  Aligned_cols=43  Identities=12%  Similarity=0.269  Sum_probs=33.4

Q ss_pred             ccccCccccCCC---ceecCCCCcccHhhHHHHHhc----CC---CCCCCccc
Q 036338           14 FRCPISLDVMKS---PVSLCTGVTYDRASIQRWLDS----GN---NTCPATMQ   56 (408)
Q Consensus        14 ~~Cpi~~~~~~d---Pv~~~cgh~f~r~cI~~~~~~----~~---~~CP~~~~   56 (408)
                      .-||||.+.+..   |++.+|||.||+.||.+|+..    +.   ..||.|+.
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            469999998853   555689999999999999863    22   25998754

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.00084  Score=65.94  Aligned_cols=167  Identities=10%  Similarity=0.095  Sum_probs=111.3

Q ss_pred             HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHH
Q 036338          102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHL  180 (408)
Q Consensus       102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~  180 (408)
                      ++.+.+.++..++. |..++..+..+++.-+.  .. ... ..+|.+..++++.+ ..+...|+.+|..++....+..  
T Consensus       166 ~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~--~~-~~~-~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~~--  238 (588)
T d1b3ua_         166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--DN-VKS-EIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQED--  238 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--HH-HHH-THHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHHH--
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH--HH-HHH-HHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHHH--
Confidence            34444555666676 88888888888764221  12 223 56777888877665 3334778888877764112222  


Q ss_pred             HHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHH
Q 036338          181 MNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLIT  260 (408)
Q Consensus       181 ~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~  260 (408)
                      .      ..-.++.+..++.+. +..+|..++.+|.+++..-...  +.. ...++.+..++.+. +++++..|+.+|..
T Consensus       239 ~------~~~i~~~l~~~~~D~-~~~Vr~~~~~~l~~l~~~~~~~--~~~-~~l~~~l~~ll~d~-~~~vr~~a~~~l~~  307 (588)
T d1b3ua_         239 L------EALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPE--ITK-TDLVPAFQNLMKDC-EAEVRAAASHKVKE  307 (588)
T ss_dssp             H------HHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHH--HHH-HTHHHHHHHHHTCS-SHHHHHHHHHHHHH
T ss_pred             H------HHHHHHHHHHhcccc-cHHHHHHHHHhHHHHHHHhhhh--hhh-hhhhHHHHHHHhcc-chHHHHHHHHHHHH
Confidence            1      123478888888888 9999999999999987543221  222 45789999999987 89999999999998


Q ss_pred             hccC--cchHHHHHhcCcHHHHHHHhcc
Q 036338          261 ISSS--KRAKTKLINHKLITELGKLITD  286 (408)
Q Consensus       261 Ls~~--~~n~~~~~~~G~i~~Lv~lL~~  286 (408)
                      ++..  ...+....-...+|.+..++.+
T Consensus       308 ~~~~l~~~~~~~~~~~~i~~~l~~~~~d  335 (588)
T d1b3ua_         308 FCENLSADCRENVIMSQILPCIKELVSD  335 (588)
T ss_dssp             HHHTSCTTTHHHHHHHTHHHHHHHHHTC
T ss_pred             HHHHHhhhhhhhhhHHHHHHHHHHhhcC
Confidence            8763  2233333334567777777764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=0.00023  Score=70.21  Aligned_cols=180  Identities=12%  Similarity=0.064  Sum_probs=116.3

Q ss_pred             HHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHH
Q 036338          103 KDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHL  180 (408)
Q Consensus       103 ~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~  180 (408)
                      +.+...+.+.+.. |..++..+..++..-   ....... ...+.+..++.++. .++  ..|+.+|..|....+. +  
T Consensus       405 ~~l~~~~~d~~~~~r~~~~~~l~~l~~~~---~~~~~~~-~l~~~l~~~l~D~~~~VR--~~A~~~L~~l~~~~~~-~--  475 (588)
T d1b3ua_         405 PAIVELAEDAKWRVRLAIIEYMPLLAGQL---GVEFFDE-KLNSLCMAWLVDHVYAIR--EAATSNLKKLVEKFGK-E--  475 (588)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHH---CGGGCCH-HHHHHHHHGGGCSSHHHH--HHHHHHHHHHHHHHCH-H--
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHc---ChHhHHH-HHHHHHHhhccCCchhHH--HHHHHHHHHHHHHhCc-H--
Confidence            3444445555544 666666666665321   0111122 34566666666555 344  7888888887641111 1  


Q ss_pred             HHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHH
Q 036338          181 MNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLIT  260 (408)
Q Consensus       181 ~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~  260 (408)
                        ..   ....++.+..++.+. +...|..++.++..+...-. ... .. ...+|.|+++++++ .+.+|..++++|..
T Consensus       476 --~~---~~~i~~~l~~~~~~~-~~~~R~~~~~~l~~l~~~~~-~~~-~~-~~ilp~ll~~~~D~-v~nVR~~a~~~l~~  545 (588)
T d1b3ua_         476 --WA---HATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEVCG-QDI-TT-KHMLPTVLRMAGDP-VANVRFNVAKSLQK  545 (588)
T ss_dssp             --HH---HHHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHH-HHH-HH-HHTHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             --HH---HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcC-hHH-HH-HHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence              11   234678888888888 88999999999888875322 122 22 35799999999987 88999999999999


Q ss_pred             hccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh
Q 036338          261 ISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILS  324 (408)
Q Consensus       261 Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~  324 (408)
                      +...-++.  .......|.|..++.+                     .|..++..|..+|..|+
T Consensus       546 i~~~~~~~--~~~~~i~~~l~~L~~D---------------------~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         546 IGPILDNS--TLQSEVKPILEKLTQD---------------------QDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HGGGSCHH--HHHHHHHHHHHHHTTC---------------------SSHHHHHHHHHHHHHTT
T ss_pred             HHHHcCcH--hHHHHHHHHHHHHcCC---------------------CCHHHHHHHHHHHHHHh
Confidence            98765443  2333345666666654                     48999999999998876

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.61  E-value=6.1e-05  Score=57.78  Aligned_cols=89  Identities=17%  Similarity=0.216  Sum_probs=72.9

Q ss_pred             cccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchH
Q 036338          189 QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAK  268 (408)
Q Consensus       189 ~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~  268 (408)
                      ...++.|+..|.+. +..+|..|+++|.++.          . .+.++.|+++|+++ ++.++..|+.+|..+..     
T Consensus        21 ~~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~----------~-~~~~~~L~~~l~d~-~~~VR~~a~~aL~~i~~-----   82 (111)
T d1te4a_          21 DEAFEPLLESLSNE-DWRIRGAAAWIIGNFQ----------D-ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG-----   82 (111)
T ss_dssp             STTHHHHHHGGGCS-CHHHHHHHHHHHGGGC----------S-HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS-----
T ss_pred             HHHHHHHHHHHcCC-CHHHHHHHHHHHHhcc----------h-hhhHHHHHhhhccc-hhHHHHHHHHHHHHhCc-----
Confidence            35688899999988 9999999999987643          2 45789999999987 89999999999988743     


Q ss_pred             HHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 036338          269 TKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVE  321 (408)
Q Consensus       269 ~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~  321 (408)
                           .++++.|..++.++                     ++.++..|+.+|.
T Consensus        83 -----~~~~~~L~~ll~d~---------------------~~~vr~~A~~aL~  109 (111)
T d1te4a_          83 -----ERVRAAMEKLAETG---------------------TGFARKVAVNYLE  109 (111)
T ss_dssp             -----HHHHHHHHHHTTSC---------------------CTHHHHHHHHHGG
T ss_pred             -----cchHHHHHHHHcCC---------------------CHHHHHHHHHHHH
Confidence                 34688888999754                     7889988888774

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.54  E-value=0.00013  Score=55.74  Aligned_cols=88  Identities=19%  Similarity=0.141  Sum_probs=69.6

Q ss_pred             ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338          142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD  221 (408)
Q Consensus       142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~  221 (408)
                      .+++.|+.+|.+++ ..+...|+.+|.++.                ..+.++.|+.+|.+. +..+|..|+.+|..+.  
T Consensus        22 ~~~~~L~~~l~d~~-~~vR~~a~~~L~~~~----------------~~~~~~~L~~~l~d~-~~~VR~~a~~aL~~i~--   81 (111)
T d1te4a_          22 EAFEPLLESLSNED-WRIRGAAAWIIGNFQ----------------DERAVEPLIKLLEDD-SGFVRSGAARSLEQIG--   81 (111)
T ss_dssp             TTHHHHHHGGGCSC-HHHHHHHHHHHGGGC----------------SHHHHHHHHHHHHHC-CTHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHcCCC-HHHHHHHHHHHHhcc----------------hhhhHHHHHhhhccc-hhHHHHHHHHHHHHhC--
Confidence            56888999998766 334488888886543                223478889999998 9999999999998763  


Q ss_pred             cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338          222 ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI  259 (408)
Q Consensus       222 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~  259 (408)
                              . .+.++.|..+++++ ++.+++.|+.+|-
T Consensus        82 --------~-~~~~~~L~~ll~d~-~~~vr~~A~~aL~  109 (111)
T d1te4a_          82 --------G-ERVRAAMEKLAETG-TGFARKVAVNYLE  109 (111)
T ss_dssp             --------S-HHHHHHHHHHTTSC-CTHHHHHHHHHGG
T ss_pred             --------c-cchHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence                    2 45789999999987 8899999998874

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.0027  Score=55.30  Aligned_cols=215  Identities=9%  Similarity=0.030  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338           99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      +..++.|++.+++.+.. +..|+..|..+...... ..      ..++.|...+-+..+..+...|+.+|..+..  ...
T Consensus        49 ~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~~------~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~--~~~  119 (276)
T d1oyza_          49 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-ED------NVFNILNNMALNDKSACVRATAIESTAQRCK--KNP  119 (276)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH--HCG
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-cc------chHHHHHHHHhcCCChhHHHHHHHHHHHHcc--ccc
Confidence            66788999999988888 88899998877543211 11      2344455555443334455888999988764  221


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC  257 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a  257 (408)
                      .      .  ....++.+...+.+. +..++..++.++..+.          . ...++.+..++... +...+..+..+
T Consensus       120 ~------~--~~~~~~~l~~~~~d~-~~~vr~~a~~~l~~~~----------~-~~~~~~l~~l~~~~-~~~~~~~~~~~  178 (276)
T d1oyza_         120 I------Y--SPKIVEQSQITAFDK-STNVRRATAFAISVIN----------D-KATIPLLINLLKDP-NGDVRNWAAFA  178 (276)
T ss_dssp             G------G--HHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC--------------CCHHHHHHHHTCS-SHHHHHHHHHH
T ss_pred             h------h--hHHHHHHHHHHhcCc-chHHHHHHHHHHhhcc----------h-HHHHHHHHHhcccc-cchhhhhHHHH
Confidence            1      1  234567777777777 8888888877766532          2 45678888888876 77788888888


Q ss_pred             HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhc
Q 036338          258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDA  337 (408)
Q Consensus       258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~  337 (408)
                      +........        ..++.++..+.++                     +..+...+..++..+..           .
T Consensus       179 ~~~~~~~~~--------~~~~~~~~~~~~~---------------------~~~~~~~~~~al~~~~~-----------~  218 (276)
T d1oyza_         179 ININKYDNS--------DIRDCFVEMLQDK---------------------NEEVRIEAIIGLSYRKD-----------K  218 (276)
T ss_dssp             HHHHTCCCH--------HHHHHHHHHTTCS---------------------CHHHHHHHHHHHHHTTC-----------G
T ss_pred             HHhhhcccc--------ccchhhhhhhhhh---------------------hhhhhhhhccccchhhh-----------h
Confidence            877665432        2445566666543                     67777878777776532           2


Q ss_pred             CchHHHHHHHHH--------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHH
Q 036338          338 ALLNGVVQKMLK--------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADL  383 (408)
Q Consensus       338 g~i~~lv~~l~~--------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~l  383 (408)
                      ..++.|++.+.+        .....+-+.++++.|..+|....+..+|..|...
T Consensus       219 ~~~~~L~~~l~d~~vr~~a~~aL~~ig~~~~~~~L~~~l~~~~d~~vr~~A~~~  272 (276)
T d1oyza_         219 RVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDK  272 (276)
T ss_dssp             GGHHHHHHHHTSSSCCHHHHHHHHHHCCGGGHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred             hhHHHHHHHhCChHHHHHHHHHHHHcCCHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence            456666664433        2222333556889898888776667788888443

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.0021  Score=66.47  Aligned_cols=170  Identities=12%  Similarity=0.040  Sum_probs=106.3

Q ss_pred             HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHH
Q 036338          102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHL  180 (408)
Q Consensus       102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~  180 (408)
                      ++.+.+.+.+.+.. |..|+.++..++.+..+.......  ..++.|+..|++.. ..++..|+++|..++.+...... 
T Consensus       397 l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~--~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~-  472 (888)
T d1qbkb_         397 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP--ELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPP-  472 (888)
T ss_dssp             HHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH--HHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCH-
T ss_pred             HHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccch--hhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhh-
Confidence            33444455666656 788899999888754433222222  46788888887665 44458899999887642111111 


Q ss_pred             HHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc--chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHH
Q 036338          181 MNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA--DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCL  258 (408)
Q Consensus       181 ~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL  258 (408)
                      ...    -...++.++..+.+. +..++..|+++|.+++...  .....+   ..+++.|+..+... +...+..+..++
T Consensus       473 ~~~----~~~~l~~ll~~l~d~-~~~V~~~a~~al~~l~~~~~~~l~p~~---~~il~~l~~~l~~~-~~~~~~~~~~al  543 (888)
T d1qbkb_         473 DTY----LKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYL---AYILDTLVFAFSKY-QHKNLLILYDAI  543 (888)
T ss_dssp             HHH----TTTHHHHHHHHHSSS-CHHHHHHHHHHHHHHHHHHTTSSGGGH---HHHHHHHHHHTTTC-CHHHHHHHHHHH
T ss_pred             hhh----hhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhhhhhhHH---HHHHHHHHHHHhhh-hHHHHHHHHHHH
Confidence            122    246788899999888 9999999999999997542  222221   34678888888875 666677777777


Q ss_pred             HHhccC---cchHHHHHhcCcHHHHHHHhc
Q 036338          259 ITISSS---KRAKTKLINHKLITELGKLIT  285 (408)
Q Consensus       259 ~~Ls~~---~~n~~~~~~~G~i~~Lv~lL~  285 (408)
                      ..++..   .-++..+.+ -.++.++....
T Consensus       544 ~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~  572 (888)
T d1qbkb_         544 GTLADSVGHHLNKPEYIQ-MLMPPLIQKWN  572 (888)
T ss_dssp             HHHHHHHGGGGCSHHHHH-HHHHHHHHHHT
T ss_pred             HHHHHhhhccccchHHHH-HHHHHHHHHHH
Confidence            766532   112222222 24566666554

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.0025  Score=67.85  Aligned_cols=248  Identities=10%  Similarity=0.168  Sum_probs=151.8

Q ss_pred             HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338          101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH  179 (408)
Q Consensus       101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~  179 (408)
                      .|..|++.+.+.|++ |.-|+..|......+.-....-... .+++.|+.+|.+.+ .+++..|+.+|..+.....+ +.
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~-~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~-~~   80 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSER-KVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE-YQ   80 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHH-HHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH-HH
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHH-HHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcH-hh
Confidence            577899999999999 9889988887654321111111122 46788999997766 33449999999988752122 11


Q ss_pred             HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC----c---chhhHHhhhcChHHHHHHhcccCCCHHHHH
Q 036338          180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD----A---DSKVKIAERDGLLAETVKSLSLDSDRRLIE  252 (408)
Q Consensus       180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~----~---~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  252 (408)
                          +    ...++.|+..+.++ +...|..++.+|..+...    .   .....+.  ...++.|...+....+..++.
T Consensus        81 ----~----~~l~~~L~~~l~~~-~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~v~~  149 (1207)
T d1u6gc_          81 ----V----ETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVC--KKITGRLTSAIAKQEDVSVQL  149 (1207)
T ss_dssp             ----H----HHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHH--HHHHHHHHHHHSCCSCHHHHH
T ss_pred             ----H----HHHHHHHHHHhcCC-chhhhHHHHHHHHHHHHhcccccccchhHHHHH--HHHHHHHHHhhcCCCCHHHHH
Confidence                1    24577788878777 888888888888766431    1   1112221  235566666666555788899


Q ss_pred             HHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHH
Q 036338          253 ASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQGRM  331 (408)
Q Consensus       253 ~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~  331 (408)
                      .|+.+|..+......--.-....+++.|+..|.++                     +..++..|+.+|..|+.. ++.  
T Consensus       150 ~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~---------------------~~~vR~~A~~~l~~l~~~~~~~--  206 (1207)
T d1u6gc_         150 EALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP---------------------RLAVRKRTIIALGHLVMSCGNI--  206 (1207)
T ss_dssp             HHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS---------------------SHHHHHHHHHHHHHHTTTC-----
T ss_pred             HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCC---------------------CHHHHHHHHHHHHHHHHHCCHH--
Confidence            99999988765322100000123566777777754                     778999999999999863 221  


Q ss_pred             HHHhhcCchHHHHHHHHH-----------HHHHHHHh----------cCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338          332 EICQDAALLNGVVQKMLK-----------TAQEAVSS----------SNVLTKILLLMQSNCTPAVRQMSADLLKIFRV  389 (408)
Q Consensus       332 ~~~~~~g~i~~lv~~l~~-----------~~~~~~~~----------~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~  389 (408)
                       ..  ...++.+++.+..           .....+.+          ...++.++..++.. .+..|+.+..++..+..
T Consensus       207 -~~--~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~  281 (1207)
T d1u6gc_         207 -VF--VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD-DDELREYCIQAFESFVR  281 (1207)
T ss_dssp             --C--TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHH
T ss_pred             -HH--HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHH
Confidence             11  1234545554443           12222221          34566666666655 45679999888887766

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.091  Score=48.09  Aligned_cols=156  Identities=10%  Similarity=0.053  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHhcCCh--h-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccc
Q 036338           99 QDEVKDIIRVAISKNE--D-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKI  174 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~--~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~  174 (408)
                      ++.++.+++.+.+...  . +..++..+..+..........-.-. ..++.++..+.+.+ +.++...|+.++.++..  
T Consensus       126 ~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~--  202 (458)
T d1ibrb_         126 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN-EILTAIIQGMRKEEPSNNVKLAATNALLNSLE--  202 (458)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH-HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT--
T ss_pred             cchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHH-HHHHHHHHHhcccccCHHHHHHHHHHHHHHHH--
Confidence            4567788888876543  3 5567777776665432221111112 46778888887765 45556888888888764  


Q ss_pred             cchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcch--hhHHhhhcChHHHHHHhcccCCCHHHHH
Q 036338          175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADS--KVKIAERDGLLAETVKSLSLDSDRRLIE  252 (408)
Q Consensus       175 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  252 (408)
                      .-.........  ....++.+..++.+. +.+.+..++..|..++.....  ...+ . ....+.+...+.+. +.+.+.
T Consensus       203 ~~~~~~~~~~~--~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~~~~l-~-~~~~~~~~~~~~~~-~~~~~~  276 (458)
T d1ibrb_         203 FTKANFDKESE--RHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSD-IDEVAL  276 (458)
T ss_dssp             TTHHHHTSHHH--HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTT-T-TTHHHHHHHHHHCS-SHHHHH
T ss_pred             hhhhhhhhHHH--HHHhHhhHHHHhcCC-CHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhccc-cHHHHH
Confidence            22111010111  234466677777777 999999999999998754321  1222 1 23344455556665 778888


Q ss_pred             HHHHHHHHhcc
Q 036338          253 ASLSCLITISS  263 (408)
Q Consensus       253 ~A~~aL~~Ls~  263 (408)
                      .|..++..++.
T Consensus       277 ~a~~~l~~i~~  287 (458)
T d1ibrb_         277 QGIEFWSNVCD  287 (458)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            89988888763

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0042  Score=66.00  Aligned_cols=177  Identities=11%  Similarity=0.030  Sum_probs=110.7

Q ss_pred             HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHH
Q 036338          102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHL  180 (408)
Q Consensus       102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~  180 (408)
                      ...+++.+.+.+.+ +..|+..|..++..+..         ..+|.++..+.+....+  ...+.+|..+........ .
T Consensus       855 ~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~---------~~lp~il~~l~~~~~~~--~~ll~al~ei~~~~~~~~-~  922 (1207)
T d1u6gc_         855 KSVILEAFSSPSEEVKSAASYALGSISVGNLP---------EYLPFVLQEITSQPKRQ--YLLLHSLKEIISSASVVG-L  922 (1207)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHH---------HHHHHHHHHHHSCGGGH--HHHHHHHHHHHHSSCSTT-T
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHH---------HHhHHHHHHHhcCchHH--HHHHHHHHHHHHhcchhh-h
Confidence            34455666666666 77777777777655432         34666777776554222  333333332211001111 0


Q ss_pred             HHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHH
Q 036338          181 MNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLIT  260 (408)
Q Consensus       181 ~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~  260 (408)
                      ...+    ...++.|...+.+. +..+|..++.+|+.|+....        ...+|.|...+.++ ++..+..++.++..
T Consensus       923 ~~~~----~~i~~~L~~~~~~~-~~~vr~~~a~~lg~L~~~~~--------~~~lp~L~~~l~~~-~~~~r~~ai~~l~~  988 (1207)
T d1u6gc_         923 KPYV----ENIWALLLKHCECA-EEGTRNVVAECLGKLTLIDP--------ETLLPRLKGYLISG-SSYARSSVVTAVKF  988 (1207)
T ss_dssp             HHHH----HHHHHHHTTCCCCS-STTHHHHHHHHHHHHHHSSG--------GGTHHHHTTTSSSS-CHHHHHHHHHHTGG
T ss_pred             HHHH----HHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            1111    12233333334455 77899999999999875432        34689999999987 89999999999998


Q ss_pred             hccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          261 ISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       261 Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      +.........-.-...|+.++..|+++                     +..++..|+.+|..++.
T Consensus       989 ~~~~~~~~~~~~l~~li~~ll~~l~d~---------------------~~~vR~~al~~l~~~~~ 1032 (1207)
T d1u6gc_         989 TISDHPQPIDPLLKNCIGDFLKTLEDP---------------------DLNVRRVALVTFNSAAH 1032 (1207)
T ss_dssp             GCCSSCCTHHHHHHHHSTTTHHHHSSS---------------------STHHHHHHHHHHHHHHH
T ss_pred             HHHhcchhhHHHHHHHHHHHHHHhCCC---------------------CHHHHHHHHHHHHHHHH
Confidence            877544322222244778888889864                     88999999999998864

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0036  Score=64.74  Aligned_cols=110  Identities=18%  Similarity=0.167  Sum_probs=77.0

Q ss_pred             hHHHHHHHh----hcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 036338          143 LVVMLVEIL----SNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFI  218 (408)
Q Consensus       143 ~i~~Lv~lL----~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~L  218 (408)
                      .++.++.++    .+.+ .+.++.|+.+|+.++.  +..+.+...+    ...++.|+..|++. ++.+|..++++|..+
T Consensus       392 il~~~l~~l~~~l~s~~-~~~reaa~~alg~i~e--g~~~~~~~~l----~~li~~l~~~l~d~-~~~Vr~~a~~~l~~~  463 (888)
T d1qbkb_         392 LLPHILPLLKELLFHHE-WVVKESGILVLGAIAE--GCMQGMIPYL----PELIPHLIQCLSDK-KALVRSITCWTLSRY  463 (888)
T ss_dssp             SHHHHHHHHHHTTTSSS-HHHHHHHHHHHHHHTT--TSHHHHTTTH----HHHHHHHHHHTTSS-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhccch-hHHHHHHHHHhhhhhh--hHHHHhcccc----hhhhHHHHHhccCC-CHHHHHHHHHHHHHH
Confidence            344444444    4443 3445888999998875  3322212222    35688889999888 999999999999998


Q ss_pred             hcC--cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338          219 AGD--ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS  263 (408)
Q Consensus       219 a~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~  263 (408)
                      +..  +.......  ...++.|++.+.++ ++.++++|++||.+++.
T Consensus       464 ~~~~~~~~~~~~~--~~~l~~ll~~l~d~-~~~V~~~a~~al~~l~~  507 (888)
T d1qbkb_         464 AHWVVSQPPDTYL--KPLMTELLKRILDS-NKRVQEAACSAFATLEE  507 (888)
T ss_dssp             HHHHHSSCHHHHT--TTHHHHHHHHHSSS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhh--hhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            753  22222232  45789999999887 88999999999999975

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.084  Score=48.31  Aligned_cols=192  Identities=14%  Similarity=0.077  Sum_probs=112.5

Q ss_pred             HHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHH
Q 036338          104 DIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMN  182 (408)
Q Consensus       104 ~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~  182 (408)
                      .+...+.+.+.+ +..++..|..++...+..-...... ...+.+...+.+.. ..+...|+..+..++.  ........
T Consensus       220 ~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~-~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~--~~~~~~~~  295 (458)
T d1ibrb_         220 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP-ALFAITIEAMKSDI-DEVALQGIEFWSNVCD--EEMDLAIE  295 (458)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTT-THHHHHHHHHHCSS-HHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred             hHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHhcccc-HHHHHHHHHHHHHHHH--HHHHHHHh
Confidence            444445566666 7888888888876654432221222 33444455555544 2334677777776653  11110000


Q ss_pred             H------------Hh-----ccCcccHHHHHHHHhcC------CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHH
Q 036338          183 L------------IL-----KRDQDCLNSLLLVLKQQ------ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETV  239 (408)
Q Consensus       183 ~------------i~-----~~~~g~i~~Lv~lL~~~------~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv  239 (408)
                      .            +.     ..-...++.+...+...      .+...+..|..++..++..... . +.  ...++.+.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-~-~~--~~l~~~i~  371 (458)
T d1ibrb_         296 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-D-IV--PHVLPFIK  371 (458)
T ss_dssp             HCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-T-HH--HHHHHHHH
T ss_pred             hhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH-h-hh--hHHHHHHH
Confidence            0            00     00012233444443321      1334788888888888764432 1 22  23577777


Q ss_pred             HhcccCCCHHHHHHHHHHHHHhccCcc-hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHH
Q 036338          240 KSLSLDSDRRLIEASLSCLITISSSKR-AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALR  318 (408)
Q Consensus       240 ~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  318 (408)
                      ..++++ +...+++|+.+|..++.... ....-.-...+|.|+.+++++                     ++.++..|+.
T Consensus       372 ~~l~s~-~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~---------------------~~~VR~~a~~  429 (458)
T d1ibrb_         372 EHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP---------------------SVVVRDTAAW  429 (458)
T ss_dssp             HHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS---------------------CHHHHHHHHH
T ss_pred             HHhcCC-CHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCC---------------------CHHHHHHHHH
Confidence            888886 88999999999999986432 111111245789999999865                     8899999999


Q ss_pred             HHHHHhC
Q 036338          319 LVEILST  325 (408)
Q Consensus       319 ~L~~L~~  325 (408)
                      +|..++.
T Consensus       430 ~l~~i~~  436 (458)
T d1ibrb_         430 TVGRICE  436 (458)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.64  Score=43.58  Aligned_cols=202  Identities=14%  Similarity=0.104  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHhcCC-hh-HHHHHHHHHHHhhhChhh---hhhhhhcCChH-HHHHHHhhcCcchhhHHHHHHHHHHhcc
Q 036338           99 QDEVKDIIRVAISKN-ED-FSENLTKIVAFAKESDEN---KTFLAKFDGLV-VMLVEILSNVNDVNMLKQVIRVLDLILN  172 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~-~~-~~~Al~~L~~la~~~~~~---r~~i~~~~G~i-~~Lv~lL~s~~~~~~~e~A~~~L~~L~~  172 (408)
                      +..+..++..|...+ .+ ....+.-+..+..+++..   -..+.+.+.-. +++..+|.+.+ .-.+..+..++..++.
T Consensus        73 ~~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d-~~~~~~s~~i~~ll~~  151 (477)
T d1ho8a_          73 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDF-QTVLISGFNVVSLLVQ  151 (477)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSH-HHHHHHHHHHHHHHTS
T ss_pred             cHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCch-hHHHHHHHHHHHHHHh
Confidence            345777888887654 34 445555556565544322   12222221211 23333333222 2123444455555543


Q ss_pred             cccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhh-hcChHHHHHHhccc-------
Q 036338          173 KIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAE-RDGLLAETVKSLSL-------  244 (408)
Q Consensus       173 ~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~-~~g~i~~Lv~lL~~-------  244 (408)
                      ...........+.    .....+-.+...+ +.+.+.-++..|..|...++.|..+-. ....+++|+++|+.       
T Consensus       152 ~~~~~~~~~e~l~----~~~~~l~~l~~~~-~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~  226 (477)
T d1ho8a_         152 NGLHNVKLVEKLL----KNNNLINILQNIE-QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLA  226 (477)
T ss_dssp             TTTCCHHHHHHHH----HCHHHHHHHHCTT-CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred             ccccccchHHHHH----HhhHHHHHhhccc-ccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhccccc
Confidence            1001111011111    1122223333445 888888899999999999999988753 24578888888864       


Q ss_pred             ---------CCCHHHHHHHHHHHHHhccCcchHHHHHhc--CcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchH
Q 036338          245 ---------DSDRRLIEASLSCLITISSSKRAKTKLINH--KLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLIT  313 (408)
Q Consensus       245 ---------~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~--G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
                               +.+.+.+=.++-++|-|+..++....+.+.  +.|+.|+++++.                    .....+.
T Consensus       227 ~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~--------------------s~KEKvv  286 (477)
T d1ho8a_         227 TRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKI--------------------TIKEKVS  286 (477)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHH--------------------CCSHHHH
T ss_pred             chhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHh--------------------hhHHHHH
Confidence                     113466778899999999988888888865  569999999976                    3478999


Q ss_pred             HHHHHHHHHHhCC
Q 036338          314 EKALRLVEILSTT  326 (408)
Q Consensus       314 ~~a~~~L~~L~~~  326 (408)
                      ..++++|.||...
T Consensus       287 Rv~l~~l~Nll~~  299 (477)
T d1ho8a_         287 RLCISIILQCCST  299 (477)
T ss_dssp             HHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999999864

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.44  Score=47.06  Aligned_cols=194  Identities=11%  Similarity=0.057  Sum_probs=116.9

Q ss_pred             HHHHHHHHHH-HhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccccc
Q 036338           99 QDEVKDIIRV-AISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIE  175 (408)
Q Consensus        99 ~~~i~~Lv~~-L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~  175 (408)
                      .+++..++.. +.+++.+ |.+|-..|..+...+..         +.+..|...+.+.. +...+..|+-.|.|.... .
T Consensus         3 ~~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~---------~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~-~   72 (861)
T d2bpta1           3 TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFL---------QFAGLSSQVLIDENTKLEGRILAALTLKNELVS-K   72 (861)
T ss_dssp             HHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCC-S
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCch---------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhc-c
Confidence            3455555544 5677877 88888888887665422         66778888887765 444445666667665431 1


Q ss_pred             chHHHH-------HHHhc-cCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCC
Q 036338          176 DQQHLM-------NLILK-RDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSD  247 (408)
Q Consensus       176 ~~~~~~-------~~i~~-~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~  247 (408)
                      ......       ..+.- .....-..++..|.+. +..+|..++.++..++..+-.....   ...++.|+..+.+..+
T Consensus        73 ~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~-~~~vr~~~a~~i~~i~~~~~p~~~w---peli~~L~~~~~s~~~  148 (861)
T d2bpta1          73 DSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSI-EPRIANAAAQLIAAIADIELPHGAW---PELMKIMVDNTGAEQP  148 (861)
T ss_dssp             SHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGTCC---HHHHHHHHHHTSTTSC
T ss_pred             cchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhCCcCch---HHHHHHHHHHhcCCCc
Confidence            111000       00100 0112235566777787 8999999999999987543111111   2468889999887656


Q ss_pred             HHHHHHHHHHHHHhccCcchHHHHHh---cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh
Q 036338          248 RRLIEASLSCLITISSSKRAKTKLIN---HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILS  324 (408)
Q Consensus       248 ~~~~~~A~~aL~~Ls~~~~n~~~~~~---~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~  324 (408)
                      ...+..|+.+|..++..-.....-.-   ...+..++..+.+.                   ..+..++..|+.+|.++.
T Consensus       149 ~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~-------------------~~~~~v~~~a~~~l~~~~  209 (861)
T d2bpta1         149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQST-------------------ETSKAVRLAALNALADSL  209 (861)
T ss_dssp             HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTT-------------------CCCHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc-------------------cCCHHHHHHHHHHHHHHH
Confidence            67888899999998754322111111   12334444444432                   346788888999998876


Q ss_pred             C
Q 036338          325 T  325 (408)
Q Consensus       325 ~  325 (408)
                      .
T Consensus       210 ~  210 (861)
T d2bpta1         210 I  210 (861)
T ss_dssp             G
T ss_pred             H
Confidence            5

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=1.8  Score=42.62  Aligned_cols=156  Identities=11%  Similarity=0.085  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHhcCC--hh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccc
Q 036338           99 QDEVKDIIRVAISKN--ED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKI  174 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~--~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~  174 (408)
                      ++-++.+++.+.+++  .. +..++..|..++++-.... ........++.++..+.+.+ +..+...|+.++.++..  
T Consensus       127 peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~-~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~--  203 (876)
T d1qgra_         127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ-LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE--  203 (876)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH-HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG--
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHH--
Confidence            456788888887654  33 6678888888876432211 11111156888888887655 44555788888877653  


Q ss_pred             cchHHH-HHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh-hHHhhhcChHHHHHHhcccCCCHHHHH
Q 036338          175 EDQQHL-MNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK-VKIAERDGLLAETVKSLSLDSDRRLIE  252 (408)
Q Consensus       175 ~~~~~~-~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~  252 (408)
                      .-.... ....   ..-.++.+...+.+. +.+.+..+...|..+....... ..... ....+.+...+++. ..+++.
T Consensus       204 ~~~~~~~~~~~---~~~i~~~l~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~-~~~~~~  277 (876)
T d1qgra_         204 FTKANFDKESE---RHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSD-IDEVAL  277 (876)
T ss_dssp             GCHHHHTSHHH---HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHHT-TTHHHHHHHHHTCS-SHHHHH
T ss_pred             HhhhhhhHHHH---HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccc-cHHHHH
Confidence            111100 0111   122456666777777 8999999999999887643221 11122 33455566666665 777888


Q ss_pred             HHHHHHHHhcc
Q 036338          253 ASLSCLITISS  263 (408)
Q Consensus       253 ~A~~aL~~Ls~  263 (408)
                      .+...+..++.
T Consensus       278 ~~~~~~~~i~~  288 (876)
T d1qgra_         278 QGIEFWSNVCD  288 (876)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88877777664

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.04  E-value=0.36  Score=45.38  Aligned_cols=122  Identities=11%  Similarity=0.174  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhc----------------CCChHHHHHHHHHHHHhhcCcc
Q 036338          160 LKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQ----------------QESVDSRIESLRLLEFIAGDAD  223 (408)
Q Consensus       160 ~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~----------------~~~~~~~~~Aa~~L~~La~~~~  223 (408)
                      ..-++..|..+..  .+..  |..+...+...+++|++.|+.                +.....+-+++.+|+-|+.+++
T Consensus       182 ~~i~v~~lq~llr--~~~~--R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~  257 (477)
T d1ho8a_         182 CYVCIRLLQELAV--IPEY--RDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV  257 (477)
T ss_dssp             HHHHHHHHHHHHT--SHHH--HHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHHhc--CccH--HHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHH
Confidence            3566666776665  3333  666542244567777777754                1123567889999999999888


Q ss_pred             hhhHHhhh-cChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc--h----HHHHHhcCcHHHHHHHhcc
Q 036338          224 SKVKIAER-DGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR--A----KTKLINHKLITELGKLITD  286 (408)
Q Consensus       224 ~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~--n----~~~~~~~G~i~~Lv~lL~~  286 (408)
                      ....+... .+.|+.|+++++...-..+.+-++.+|+||+....  +    ...|+..+++ +++..|..
T Consensus       258 ~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L~~  326 (477)
T d1ho8a_         258 FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSE  326 (477)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHS
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHHhc
Confidence            77777652 24699999999876567899999999999987532  2    2334455555 55666764

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.41  E-value=2.5  Score=41.19  Aligned_cols=158  Identities=8%  Similarity=0.054  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHhcCChh--HHHHHHHHHHHhhhChhhhhhhh-hcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccc
Q 036338           99 QDEVKDIIRVAISKNED--FSENLTKIVAFAKESDENKTFLA-KFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKI  174 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~~~--~~~Al~~L~~la~~~~~~r~~i~-~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~  174 (408)
                      ++-++.|++.+.+.+.+  +..|+..|..++...+.....+. .....+..++..+.+.. +..+...|+.+|.++... 
T Consensus       133 peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~-  211 (861)
T d2bpta1         133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF-  211 (861)
T ss_dssp             HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG-
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH-
Confidence            45677788877776544  66788888888765332222222 11123344444444444 445558888898887642 


Q ss_pred             cchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh-hHHhhhcChHHHH-HHhcccCCCHHHHH
Q 036338          175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK-VKIAERDGLLAET-VKSLSLDSDRRLIE  252 (408)
Q Consensus       175 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~-~~i~~~~g~i~~L-v~lL~~~~~~~~~~  252 (408)
                       -.........  ....++.+...+.+. +.+.+..+...+..++...... .....  ..+..+ ....++. ++.++.
T Consensus       212 -~~~~~~~~~~--~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~~~~l~--~~l~~l~~~~~~~~-~~~v~~  284 (861)
T d2bpta1         212 -IKNNMEREGE--RNYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYME--QALYALTIATMKSP-NDKVAS  284 (861)
T ss_dssp             -CHHHHTSHHH--HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHH--HTHHHHHHHHTTCS-SHHHHH
T ss_pred             -HhHhHHhhhh--hhHHHHhHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCc-cHHHHH
Confidence             1111011111  234577788888888 9999999999999887543211 11111  123333 3444454 788999


Q ss_pred             HHHHHHHHhccC
Q 036338          253 ASLSCLITISSS  264 (408)
Q Consensus       253 ~A~~aL~~Ls~~  264 (408)
                      .+...+..++..
T Consensus       285 ~~~~~l~~l~~~  296 (861)
T d2bpta1         285 MTVEFWSTICEE  296 (861)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            998888877643

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=1  Score=44.38  Aligned_cols=190  Identities=9%  Similarity=0.082  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHhcCC--hh-HHHHHHHHHHHhhhC----------------hhhhhhhhhcCChHHHHHHHhhcCcchhh
Q 036338           99 QDEVKDIIRVAISKN--ED-FSENLTKIVAFAKES----------------DENKTFLAKFDGLVVMLVEILSNVNDVNM  159 (408)
Q Consensus        99 ~~~i~~Lv~~L~s~~--~~-~~~Al~~L~~la~~~----------------~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~  159 (408)
                      ++-+..|.+.+.+.+  .. |..|+-.|++....+                ++.|..|.      ..++..|.+++..+ 
T Consensus        34 ~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik------~~ll~~l~~~~~~~-  106 (876)
T d1qgra_          34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVK------NYVLHTLGTETYRP-  106 (876)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHH------HHHHHHTTTCCSSS-
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHH------HHHHHHhcCCcHHH-
Confidence            456677777776654  34 777777787765322                22233333      34777777655322 


Q ss_pred             HHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcC-CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHH
Q 036338          160 LKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQ-ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAET  238 (408)
Q Consensus       160 ~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~-~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~L  238 (408)
                       ..++.++..++.  .+-+  ..    .=.+.++.|+..+.++ .+...+..+..+|..++..-...........+++.+
T Consensus       107 -~~~a~~i~~i~~--~~~p--~~----~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i  177 (876)
T d1qgra_         107 -SSASQCVAGIAC--AEIP--VN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAI  177 (876)
T ss_dssp             -CHHHHHHHHHHH--HHGG--GT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHH
T ss_pred             -HHHHHHHHHHHH--HHCC--cc----ccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence             445566666654  2211  00    0246789999988764 145678888999998875433222222224578888


Q ss_pred             HHhcccC-CCHHHHHHHHHHHHHhccCcchHHH--HHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHH
Q 036338          239 VKSLSLD-SDRRLIEASLSCLITISSSKRAKTK--LINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEK  315 (408)
Q Consensus       239 v~lL~~~-~~~~~~~~A~~aL~~Ls~~~~n~~~--~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (408)
                      +..+.+. .+..++..|..++.++.........  ....-.++.+...+.++                     +..++..
T Consensus       178 ~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~---------------------~~~v~~~  236 (876)
T d1qgra_         178 IQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP---------------------DTRVRVA  236 (876)
T ss_dssp             HHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS---------------------SHHHHHH
T ss_pred             HHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCC---------------------CHHHHHH
Confidence            8888653 3568899999999887654322111  11112344555555543                     6777888


Q ss_pred             HHHHHHHHhC
Q 036338          316 ALRLVEILST  325 (408)
Q Consensus       316 a~~~L~~L~~  325 (408)
                      +...|..+..
T Consensus       237 ~~~~l~~l~~  246 (876)
T d1qgra_         237 ALQNLVKIMS  246 (876)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888777653

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.36  E-value=2.6  Score=37.66  Aligned_cols=172  Identities=14%  Similarity=0.156  Sum_probs=107.7

Q ss_pred             HHHHHhcCChh--HHHHHHHHHHHhhhChhhh-hhhhhcCChHHHHHHHhhcC---------c-chhhHHHHHHHHHHhc
Q 036338          105 IIRVAISKNED--FSENLTKIVAFAKESDENK-TFLAKFDGLVVMLVEILSNV---------N-DVNMLKQVIRVLDLIL  171 (408)
Q Consensus       105 Lv~~L~s~~~~--~~~Al~~L~~la~~~~~~r-~~i~~~~G~i~~Lv~lL~s~---------~-~~~~~e~A~~~L~~L~  171 (408)
                      .|..|++...+  ...-+..|+--...++-.+ ..+ .. +|+..|+.+|..-         . +......++.+|..+.
T Consensus         7 yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~-~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           7 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GA-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HH-HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-Hh-ccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            45566655433  2233444443344444332 234 45 6788888888431         1 2334466788888877


Q ss_pred             ccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc---chhh----------HHhhhcChHHHH
Q 036338          172 NKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA---DSKV----------KIAERDGLLAET  238 (408)
Q Consensus       172 ~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~---~~~~----------~i~~~~g~i~~L  238 (408)
                      .  .. .....++.  ...++..++..|.+. ...+|..|..+|..+|...   ++-.          ...+ .+-+.++
T Consensus        85 n--~~-~G~~~vl~--~~~~i~~l~~~L~s~-~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e-~~RF~~l  157 (343)
T d2bnxa1          85 N--NK-FGIKTMLE--TEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPL  157 (343)
T ss_dssp             S--SH-HHHHHHHH--SSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHH
T ss_pred             c--cH-HHHHHHHc--ChHHHHHHHHccCCC-chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC-CCcHHHH
Confidence            5  33 33356665  889999999999988 9999999999999998542   1121          2233 4567889


Q ss_pred             HHhcccCCCHHHHHHHHHHHHHhccCcc-------hHHHHHhcCcHHHHHHHhcc
Q 036338          239 VKSLSLDSDRRLIEASLSCLITISSSKR-------AKTKLINHKLITELGKLITD  286 (408)
Q Consensus       239 v~lL~~~~~~~~~~~A~~aL~~Ls~~~~-------n~~~~~~~G~i~~Lv~lL~~  286 (408)
                      |+.|+.+.+.+.+.+.+..+-.|..+.+       -|..+..+|..+ ++..|+.
T Consensus       158 v~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~-il~~l~~  211 (343)
T d2bnxa1         158 LDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELRE  211 (343)
T ss_dssp             HHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH-HHHHHTT
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHH-HHHHHHc
Confidence            9999876566776666666666666543       355666676554 5555654

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.38  E-value=0.1  Score=36.55  Aligned_cols=47  Identities=17%  Similarity=0.185  Sum_probs=37.8

Q ss_pred             ccccCccccCC-----Cceec--CCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338           14 FRCPISLDVMK-----SPVSL--CTGVTYDRASIQRWLDSGNNTCPATMQVLQS   60 (408)
Q Consensus        14 ~~Cpi~~~~~~-----dPv~~--~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~   60 (408)
                      -+|.||++-.-     +|.+.  .|+.-.||.|.+--.++++..||+|+.++..
T Consensus        17 q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr   70 (93)
T d1weoa_          17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR   70 (93)
T ss_dssp             CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred             chhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhh
Confidence            57999987553     36665  4999999999887788889999999987644

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.62  E-value=0.21  Score=33.49  Aligned_cols=42  Identities=12%  Similarity=0.260  Sum_probs=31.9

Q ss_pred             CcccccCccccCCCceecC----CCCcccHhhHHHHHhc----CCCCCCC
Q 036338           12 SFFRCPISLDVMKSPVSLC----TGVTYDRASIQRWLDS----GNNTCPA   53 (408)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~~----cgh~f~r~cI~~~~~~----~~~~CP~   53 (408)
                      ..+.|.+|.+-+.|.-.+.    -+|.||-.|-..+++.    +.-+||.
T Consensus         7 ~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~q~~~~evyCPS   56 (80)
T d2cs3a1           7 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS   56 (80)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred             CceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHHhcCCCCcEECCC
Confidence            4488999999999965543    3799999999888764    2345665

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.57  E-value=0.075  Score=45.63  Aligned_cols=50  Identities=8%  Similarity=-0.009  Sum_probs=27.2

Q ss_pred             HHHHHHhcccCCCHHHHHHHHHHH-----HHhccCcc--hHHHHHhcCcHHHHHHHhcc
Q 036338          235 LAETVKSLSLDSDRRLIEASLSCL-----ITISSSKR--AKTKLINHKLITELGKLITD  286 (408)
Q Consensus       235 i~~Lv~lL~~~~~~~~~~~A~~aL-----~~Ls~~~~--n~~~~~~~G~i~~Lv~lL~~  286 (408)
                      .+.|..++++. ++.++..++..|     ..|...+.  .|..+++. +.+.++..|.+
T Consensus       164 ~~~L~~l~~D~-d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~-~~~~ll~~L~D  220 (233)
T d1lrva_         164 EESLGLMTQDP-EPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH-ASLEALRELDE  220 (233)
T ss_dssp             GGGGGGSTTCS-SHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH-SCHHHHHHCCC
T ss_pred             HHHHHHHccCC-CHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHh-ccHHHHHHhCC
Confidence            35566667765 777777777653     23333322  34444443 33556666653

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.75  E-value=0.03  Score=48.32  Aligned_cols=61  Identities=20%  Similarity=0.099  Sum_probs=29.6

Q ss_pred             cHHHHHHHHhcCCChHHHHHHHHHH-----HHhhcCcc--hhhHHhhhcChHHHHHHhcccCCCHHHHHHHH
Q 036338          191 CLNSLLLVLKQQESVDSRIESLRLL-----EFIAGDAD--SKVKIAERDGLLAETVKSLSLDSDRRLIEASL  255 (408)
Q Consensus       191 ~i~~Lv~lL~~~~~~~~~~~Aa~~L-----~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~  255 (408)
                      ..+.|..+++.. +..+|..++..|     ..|..+++  .+....+.  ..+.++..|.++ ++++++.|+
T Consensus       163 ~~~~L~~l~~D~-d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~--~~~~ll~~L~D~-d~~VR~aA~  230 (233)
T d1lrva_         163 PEESLGLMTQDP-EPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH--ASLEALRELDEP-DPEVRLAIA  230 (233)
T ss_dssp             CGGGGGGSTTCS-SHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH--SCHHHHHHCCCC-CHHHHHHHH
T ss_pred             CHHHHHHHccCC-CHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHh--ccHHHHHHhCCC-CHHHHHHHH
Confidence            345555556665 667776666432     23333332  22223221  224455556554 666666554

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=83.91  E-value=9.5  Score=33.53  Aligned_cols=93  Identities=11%  Similarity=0.046  Sum_probs=59.6

Q ss_pred             HHHHHHHH----hcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccC------CCHHHHHHHHHHHHHh
Q 036338          192 LNSLLLVL----KQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLD------SDRRLIEASLSCLITI  261 (408)
Q Consensus       192 i~~Lv~lL----~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~------~~~~~~~~A~~aL~~L  261 (408)
                      ++.+...+    ..+ +.+.+.-+..+|+|+-.           .+.++.|..++...      .+..++.+|.+||+++
T Consensus       170 ~~~l~~~l~~~~~~~-~~~~~~~~LkaLGN~g~-----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~  237 (336)
T d1lsha1         170 LQPLHDLLSQSSDRA-KEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNI  237 (336)
T ss_dssp             THHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTG
T ss_pred             HHHHHHHHHHhhccc-chHHHHHHHHHHhccCC-----------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHh
Confidence            44444444    345 66667777888888651           34678888888542      2568999999999999


Q ss_pred             ccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHH
Q 036338          262 SSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEI  322 (408)
Q Consensus       262 s~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~  322 (408)
                      .......       +.+.|..++.+.                   ..+.+++-.|..+|..
T Consensus       238 ~~~~p~~-------v~~~l~~i~~n~-------------------~e~~EvRiaA~~~lm~  272 (336)
T d1lsha1         238 AKRDPRK-------VQEIVLPIFLNV-------------------AIKSELRIRSCIVFFE  272 (336)
T ss_dssp             GGTCHHH-------HHHHHHHHHHCT-------------------TSCHHHHHHHHHHHHH
T ss_pred             hhcCcHH-------HHHHHHHHHcCC-------------------CCChHHHHHHHHHHHh
Confidence            7764322       335566777654                   3466666666655544

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.64  E-value=6.2  Score=39.21  Aligned_cols=136  Identities=12%  Similarity=0.157  Sum_probs=89.6

Q ss_pred             HHHHHHHHhc-CChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccc-----
Q 036338          102 VKDIIRVAIS-KNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNK-----  173 (408)
Q Consensus       102 i~~Lv~~L~s-~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~-----  173 (408)
                      ++.+.+.|.. .+++ +.+|=..|..+...           ||.+..|+.++.+.. +..++..|+-.|.|....     
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~-----------p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~   72 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLETQ-----------DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDE   72 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHHTS-----------TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence            4455555543 3555 77777777776432           388889999998766 444445666666665421     


Q ss_pred             -----ccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCH
Q 036338          174 -----IEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDR  248 (408)
Q Consensus       174 -----~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~  248 (408)
                           ++++.  |..|.       ..|+..|.+. +..+|...+.++..++..+-. ...   .+.++.|+..++++ ++
T Consensus        73 ~~~~~i~~e~--k~~Ik-------~~ll~~l~~~-~~~ir~~l~~~i~~I~~~d~p-~~W---p~ll~~l~~~l~s~-~~  137 (959)
T d1wa5c_          73 NGNHLLPANN--VELIK-------KEIVPLMISL-PNNLQVQIGEAISSIADSDFP-DRW---PTLLSDLASRLSND-DM  137 (959)
T ss_dssp             SSCBSSCHHH--HHHHH-------HHHHHHHHHS-CHHHHHHHHHHHHHHHHHHST-TTC---TTHHHHHHTTCCSS-CT
T ss_pred             cccCCCCHHH--HHHHH-------HHHHHHHhCC-cHHHHHHHHHHHHHHHHHhCc-ccc---HHHHHHHHHHhCCC-CH
Confidence                 11122  44442       3445556666 888999999999998864311 111   46899999999986 77


Q ss_pred             HHHHHHHHHHHHhcc
Q 036338          249 RLIEASLSCLITISS  263 (408)
Q Consensus       249 ~~~~~A~~aL~~Ls~  263 (408)
                      .....++.+|..++.
T Consensus       138 ~~~~~~L~~l~~i~k  152 (959)
T d1wa5c_         138 VTNKGVLTVAHSIFK  152 (959)
T ss_dssp             THHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888889999988874

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.20  E-value=18  Score=31.50  Aligned_cols=191  Identities=10%  Similarity=0.097  Sum_probs=124.3

Q ss_pred             HHHHHHHhcCChh-HHHHHHHHHHHhhhChhhh----hhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338          103 KDIIRVAISKNED-FSENLTKIVAFAKESDENK----TFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ  177 (408)
Q Consensus       103 ~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r----~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~  177 (408)
                      ..|+..|..=+-+ |..+......+.......+    +.+...+.++..|+.--..++   ..-.+-..|..+.+  ++.
T Consensus        72 ~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~e---iAl~~G~mLREcik--~e~  146 (330)
T d1upka_          72 STLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPE---IALNCGIMLRECIR--HEP  146 (330)
T ss_dssp             HHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTT---THHHHHHHHHHHHT--SHH
T ss_pred             HHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcc---hhhhhhHHHHHHHh--hHH
Confidence            3444444444545 7777777776665433333    456655444444444333222   22334445666655  332


Q ss_pred             HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc-Ccchh-hHHhh-hcChHHHHHHhcccCCCHHHHHHH
Q 036338          178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG-DADSK-VKIAE-RDGLLAETVKSLSLDSDRRLIEAS  254 (408)
Q Consensus       178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~-~~~~~-~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~A  254 (408)
                        +.+.|.  ....+..+.+....+ +-++-..|...+..|-. +.... +.+.. -.-++....++|.++ +--.++.+
T Consensus       147 --lak~iL--~s~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~-NYVtrRqS  220 (330)
T d1upka_         147 --LAKIIL--WSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQS  220 (330)
T ss_dssp             --HHHHHH--HSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHH
T ss_pred             --HHHHHH--ccHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC-chHHHHHH
Confidence              244555  677789999999998 99999999999997654 33322 22222 134677788899887 88999999


Q ss_pred             HHHHHHhccCcchHHHHH----hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338          255 LSCLITISSSKRAKTKLI----NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST  325 (408)
Q Consensus       255 ~~aL~~Ls~~~~n~~~~~----~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~  325 (408)
                      +..|..+-....|...|.    +..-+..++.+|++.                     +..++-.|--+..-...
T Consensus       221 lKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~---------------------sk~Iq~EAFhVFKvFVA  274 (330)
T d1upka_         221 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK---------------------SRNIQFEAFHVFKVFVA  274 (330)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc---------------------hhhHHHHhhhHhhhhhc
Confidence            999999998888877664    345677788888864                     77888888888777554