Citrus Sinensis ID: 036356

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460--
Protein Sequence
MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTDKRPGV
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHcccccccEEEHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHccccccccEEHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHccHHHHHHHHHHcccccEEHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mqvawvapngctpplVLKACValpsllmgprvhgqiFSLGFLVCYLFDGLFDRTIVFLDLYHLwsrtewsafgsfdgllsneeneygtaldcscdlefleqGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDyyigkseyrnnVIVNTVLIDMYakcgsvdlapmffdrtldkdVVMRSAMIVGYGLhewsafgsfdgllsneeneygtaldcscdlefleqGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDyyigkseyrnnVIVNTVLIDMYakcgsvdlapmffdrtldKDVVMRSAMTVGyglhglgeEGWVLFHHIRkhgieprhqHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGidegektdkrpgv
Flexible Loop (DISEMBL)
mqvawvapngctppLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTirgidegektdkrpgv
Low Complexity Region (SEG)
MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIElrlsvrrallsaWKIPMQQWENMLQTIRGIDEGEKTDKRPGV
Disordered region (IsUnstruct)
**VAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRG*************
Disordered Region (DISOPRED)
***AWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTI***************
Disordered Region (DISEMBL)
MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEG*********
Disordered Region (DISPRO)
*****VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEG*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTDKRPGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	462	2.2.26 [Sep-21-2011]
Q9LTV8	694	Pentatricopeptide repeat-	yes	no	0.744	0.495	0.299	1e-44
Q3E6Q1	809	Pentatricopeptide repeat-	no	no	0.727	0.415	0.274	2e-33
Q9SN39	871	Pentatricopeptide repeat-	no	no	0.876	0.464	0.264	1e-31
Q9LIQ7	633	Pentatricopeptide repeat-	no	no	0.588	0.429	0.270	6e-27
P93005	727	Pentatricopeptide repeat-	no	no	0.699	0.444	0.272	2e-26
Q9SUH6	792	Pentatricopeptide repeat-	no	no	0.790	0.460	0.243	2e-25
Q9SVA5	834	Pentatricopeptide repeat-	no	no	0.742	0.411	0.259	1e-24
Q9SVP7	1064	Pentatricopeptide repeat-	no	no	0.932	0.405	0.244	8e-24
P0C898	689	Putative pentatricopeptid	no	no	0.725	0.486	0.247	1e-23
O82380	738	Pentatricopeptide repeat-	no	no	0.638	0.399	0.236	1e-23

>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1

 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 145/484 (29%), Positives = 218/484 (45%), Gaps = 140/484 (28%)

Query: 86  YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------------- 130
           Y + +D +     L+Q   +H  ++ LGL+    L+  L                     
Sbjct: 24  YASLIDSATHKAQLKQ---IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLP 80

Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKL---------------FPKWMDYYIGKSE------ 169
           +P +   NA+I GY++N + ++A+ +               FP  +    G S       
Sbjct: 81  RPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRF 140

Query: 170 ---------YRNNVIVNTVLIDMYAKCGSVDLAPMFFD--RTLDKDVVMRSAMIVGYG-- 216
                    +  +V V   LI +YAKC  +  A   F+     ++ +V  +A++  Y   
Sbjct: 141 VHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQN 200

Query: 217 ------LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 270
                 L  +S     D  +  +     + L+    L+ L+QG+ +H  ++K+GLE+E D
Sbjct: 201 GEPMEALEIFSQMRKMD--VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPD 258

Query: 271 LLISLT---AVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF------- 308
           LLISL    A C               PN+ LWNAMISGYAKNGYA EA+ +F       
Sbjct: 259 LLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKD 318

Query: 309 -----------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
                                   + M  Y+G+S+YR++V +++ LIDM+AKCGSV+ A 
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGAR 378

Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHG------------------------LG--------- 372
           + FDRTLD+DVV+ SAM VGYGLHG                        LG         
Sbjct: 379 LVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSG 438

Query: 373 --EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
              EGW  F+ +  H I P+ QHYA V+DLL RAG+ + A++ I  MP++  ++V  ALL
Sbjct: 439 MVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALL 498

Query: 431 SAWK 434
           SA K
Sbjct: 499 SACK 502

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1

 Score =  144 bits (362), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 129/470 (27%), Positives = 195/470 (41%), Gaps = 134/470 (28%)

Query: 99  LEQGKIVHGFMIKLGLELESDLLISLT---AVCRYQPNVTLR-------------NAMIS 142
           L  GK +HG ++K G  L+   +  L    A CR Q N   +             N +++
Sbjct: 151 LRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCR-QVNEARKVFDRMPERDLVSWNTIVA 209

Query: 143 GYAKNGYAEEA-------------------VKLFP-----------KWMDYYIGKSEYRN 172
           GY++NG A  A                   V + P           K +  Y  +S + +
Sbjct: 210 GYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDS 269

Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLL 230
            V ++T L+DMYAKCGS++ A   FD  L+++VV  ++MI  Y  +E    A   F  +L
Sbjct: 270 LVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKML 329

Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR--- 280
                  +     AL    DL  LE+G+ +H   ++LGL+    +   LIS+   C+   
Sbjct: 330 DEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVD 389

Query: 281 ---------YQPNVTLWNAMISGYAKNGYAEEAVKLFP---------------------- 309
                        +  WNAMI G+A+NG   +A+  F                       
Sbjct: 390 TAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIA 449

Query: 310 --------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
                   KW+   + +S    NV V T L+DMYAKCG++ +A + FD   ++ V   +A
Sbjct: 450 ELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNA 509

Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPR------------------------------- 390
           M  GYG HG G+    LF  ++K  I+P                                
Sbjct: 510 MIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENY 569

Query: 391 -----HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
                  HY  +VDLL RAG  N A+ FIM MP++  ++V  A+L A +I
Sbjct: 570 SIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQI 619

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 139/525 (26%), Positives = 216/525 (41%), Gaps = 120/525 (22%)

Query: 1   MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
           M  + V  +  T   V K+  +L S+  G ++HG I   GF       G  +     L  
Sbjct: 186 MMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGF-------GERNSVGNSLVA 238

Query: 61  YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
           ++L ++   SA   FD +   +   + + ++        E+G  V   M+  G+E++   
Sbjct: 239 FYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLAT 298

Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
           ++S+ A C     ++L  A+ S   K  ++                    R +   NT L
Sbjct: 299 IVSVFAGCADSRLISLGRAVHSIGVKACFS--------------------REDRFCNT-L 337

Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENE---- 236
           +DMY+KCG +D A   F    D+ VV  ++MI GY     +  G    L    E E    
Sbjct: 338 LDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLA--GEAVKLFEEMEEEGISP 395

Query: 237 ----YGTALDCSCDLEFLEQGKIVHGFMIK--LGLEL-ESDLLISLTAVCRYQPNVTL-- 287
                   L+C      L++GK VH ++ +  LG ++  S+ L+ + A C       L  
Sbjct: 396 DVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVF 455

Query: 288 ----------WNAMISGYAKNGYAEEAVKLFPKWMDY----------------------- 314
                     WN +I GY+KN YA EA+ LF   ++                        
Sbjct: 456 SEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAF 515

Query: 315 --------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
                   YI ++ Y ++  V   L+DMYAKCG++ LA M FD    KD+V  + M  GY
Sbjct: 516 DKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGY 575

Query: 367 GLHGLGEEGWVLFHHIRKHGIE------------------------------------PR 390
           G+HG G+E   LF+ +R+ GIE                                    P 
Sbjct: 576 GMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPT 635

Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
            +HYA +VD+LAR G    A++FI NMPI    ++  ALL   +I
Sbjct: 636 VEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 680

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1

 Score =  122 bits (306), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 153/358 (42%), Gaps = 86/358 (24%)

Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WS 221
           +I +S +R+++++   L++MYAKCGS++ A   F++   +D V  + +I GY  H+    
Sbjct: 85  HILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCD 144

Query: 222 AFGSFDGLL----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
           A   F+ +L    S  E    + +  +        G  +HGF +K G +    +  +L  
Sbjct: 145 ALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLD 204

Query: 278 V-CRY--------------QPNVTLWNAMISGYAKNGYAEEAVKLFP------------- 309
           +  RY                N   WNA+I+G+A+    E+A++LF              
Sbjct: 205 LYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFS 264

Query: 310 -----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
                            KW+  Y+ KS  +        L+DMYAK GS+  A   FDR  
Sbjct: 265 YASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA 324

Query: 353 DKDVVMRSAMTVGYGLHGLG-----------------------------------EEGWV 377
            +DVV  +++   Y  HG G                                   +EGW 
Sbjct: 325 KRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWH 384

Query: 378 LFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
            +  ++K GI P   HY  VVDLL RAG  N A +FI  MPIE   ++ +ALL+A ++
Sbjct: 385 YYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRM 442

Arabidopsis thaliana (taxid: 3702)

>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1

 Score =  120 bits (302), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 190/444 (42%), Gaps = 121/444 (27%)

Query: 112 LGLELESDLLISLTAVCRYQP--NVTLRNAMISGYAKNGYAEEAVKLFPKWM-------- 161
           +G+  ++ L+     V  Y P  N    + M+SGYA  G  EEA+K+F  ++        
Sbjct: 160 VGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSD 219

Query: 162 -DY-------------YIG----------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
            DY             Y+G          K+     V ++  L+ MY+KC S++ A   F
Sbjct: 220 SDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMF 279

Query: 198 DRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSN--EENEYGTA--LDCSCDLEFLE 251
           D + D++ +  SAM+ GY  +  S  A   F  + S   + +EY     L+   D+ +LE
Sbjct: 280 DSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLE 339

Query: 252 QGKIVHGFMIKLGLE---LESDLLISLTAV------------CRYQPNVTLWNAMISGYA 296
           +GK +H F++KLG E     +  L+ + A             C  + +V LW ++ISGY 
Sbjct: 340 EGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYV 399

Query: 297 KNGYAEEAVKLFPKWMDYYI----------------------GKSEYRNN--------VI 326
           +N   EEA+ L+ +     I                      GK  + +         V 
Sbjct: 400 QNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVP 459

Query: 327 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE------------ 374
           + + L  MY+KCGS++   + F RT +KDVV  +AM  G   +G G+E            
Sbjct: 460 IGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEG 519

Query: 375 -----------------------GWVLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNHA 410
                                  GW  F+ +    G++P+  HYA +VDLL+RAG    A
Sbjct: 520 MEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEA 579

Query: 411 FKFIMNMPIELRLSVRRALLSAWK 434
            +FI +  I+  L + R LLSA K
Sbjct: 580 KEFIESANIDHGLCLWRILLSACK 603

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1

 Score =  117 bits (294), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 122/501 (24%), Positives = 192/501 (38%), Gaps = 136/501 (27%)

Query: 79  LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-------- 130
           L    + Y  A+  +        G+++HG  +  G +  S+LL+    V  Y        
Sbjct: 115 LKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCD--SELLLGSNIVKMYFKFWRVED 172

Query: 131 ---------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGK-------------- 167
                    + +  L N MISGY KN    E++++F   ++    +              
Sbjct: 173 ARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVA 232

Query: 168 --SEYRNNVIVNTV---------------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
              E R  + ++++                I +Y+KCG + +    F      D+V  +A
Sbjct: 233 ELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNA 292

Query: 211 MIVGY---GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 267
           MI GY   G  E S     + +LS       T +        L     +HG+ +K     
Sbjct: 293 MIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLS 352

Query: 268 ESDLLISLTAVCRY-------------QPNVTL--WNAMISGYAKNGYAEEAVKLFP--- 309
            + +  +LT V                 P  +L  WNAMISGY +NG  E+A+ LF    
Sbjct: 353 HASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ 412

Query: 310 ---------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
                                      KW+   +  +++ +++ V+T LI MYAKCGS+ 
Sbjct: 413 KSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIA 472

Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH--------------------- 381
            A   FD    K+ V  + M  GYGLHG G+E   +F+                      
Sbjct: 473 EARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACS 532

Query: 382 ---------------IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
                          I ++G EP  +HYA +VD+L RAG+   A +FI  M IE   SV 
Sbjct: 533 HAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVW 592

Query: 427 RALLSAWKIPMQQWENMLQTI 447
             LL A +I   +  N+ +T+
Sbjct: 593 ETLLGACRI--HKDTNLARTV 611

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 180/481 (37%), Gaps = 138/481 (28%)

Query: 87  GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL-------------ISLTAVCRYQPN 133
            T L     L FLE GK +H  +++ GLE+++ L+             I+   +    PN
Sbjct: 253 STVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPN 312

Query: 134 VTLRN--AMISGYAKNGYAEEAVKLFPKWMDY---------------------------- 163
             + +   ++SGY +N   +EA++LF     +                            
Sbjct: 313 KNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQV 372

Query: 164 --YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----- 216
             Y  K+   N+  V   LIDMYAKC  +  A   FD     DVV+ +AMI GY      
Sbjct: 373 HAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQ 432

Query: 217 --LHEWSAFGSFDG----LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE-- 268
             LHE  A   F      L+      + + L  S  L  L   K +HG M K GL L+  
Sbjct: 433 WELHE--ALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIF 490

Query: 269 -SDLLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF------- 308
               LI + + C                ++ +WN+M +GY +    EEA+ LF       
Sbjct: 491 AGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSR 550

Query: 309 --PKWMDY---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
             P    +                      + K     N  +   L+DMYAKCGS + A 
Sbjct: 551 ERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAH 610

Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLG--------------------------------- 372
             FD    +DVV  +++   Y  HG G                                 
Sbjct: 611 KAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAG 670

Query: 373 --EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
             E+G   F  + + GIEP  +HY  +V LL RAG  N A + I  MP +    V R+LL
Sbjct: 671 LVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLL 730

Query: 431 S 431
           S
Sbjct: 731 S 731

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2

 Score =  112 bits (279), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 145/593 (24%), Positives = 219/593 (36%), Gaps = 162/593 (27%)

Query: 1   MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIV 56
           M V  + P       VL AC  + SL +G ++HG +  LGF     VC     L+     
Sbjct: 279 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGN 338

Query: 57  FLDLYHLWSRTEWS---------------AFGS----------FDGLLSNEENEYGTALD 91
            +   H++S                     +G            DGL  +        + 
Sbjct: 339 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVA 398

Query: 92  CSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC------------RYQPNVTL 136
           CS D     +G+ +H +  KLG    + +   L++L A C                NV L
Sbjct: 399 CSADGTLF-RGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVL 457

Query: 137 RNAMISGYA-----KNGYA-------EEAVK---LFPKWM-------DYYIG-------- 166
            N M+  Y      +N +        EE V     +P  +       D  +G        
Sbjct: 458 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 517

Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFG 224
           K+ ++ N  V +VLIDMYAK G +D A     R   KDVV  + MI GY  + +   A  
Sbjct: 518 KTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALT 577

Query: 225 SFDGLLSN--EENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
           +F  +L      +E G   A+     L+ L++G+ +H      G   +    + L++L +
Sbjct: 578 TFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYS 637

Query: 278 VCRYQPNVTL------------WNAMISGYAKNGYAEEAVKLF----------------- 308
            C       L            WNA++SG+ ++G  EEA+++F                 
Sbjct: 638 RCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGS 697

Query: 309 -------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
                         K +   I K+ Y +   V   LI MYAKCGS+  A   F     K+
Sbjct: 698 AVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKN 757

Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHI--------------------------------- 382
            V  +A+   Y  HG G E    F  +                                 
Sbjct: 758 EVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFE 817

Query: 383 ---RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
               ++G+ P+ +HY  VVD+L RAG  + A +FI  MPI+    V R LLSA
Sbjct: 818 SMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 870

Arabidopsis thaliana (taxid: 3702)

>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 190/473 (40%), Gaps = 138/473 (29%)

Query: 100 EQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISGY 144
           +QG  VH +++K G  L    S+ LI +   CR             + NV   +A++SG+
Sbjct: 23  DQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGH 82

Query: 145 AKNGYAEEAVKLFPKWMDYYIGKSEYRNN------------------------------V 174
             NG  + ++ LF +     I  +E+  +                              V
Sbjct: 83  VLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMV 142

Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG-----YGLHEWSAFGSF-DG 228
            V   L+DMY+KCG ++ A   F R +D+ ++  +AMI G     YG      FG   + 
Sbjct: 143 EVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEA 202

Query: 229 LLSNEENEYG-TALDCSCDLE-FLEQGKIVHGFMIKLGLELESDL-----LISLTAVCRY 281
            +    +E+  T+L  +C     +  GK +HGF+++ G    S       L+ L   C Y
Sbjct: 203 NIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGY 262

Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLFPK------------------- 310
                       +  +  W+++I GYA+ G   EA+ LF +                   
Sbjct: 263 LFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGV 322

Query: 311 WMDYYIGKSEYR------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
           + D+ + +   +               ++N+V +DMY KCG VD A   F     KDV+ 
Sbjct: 323 FADFALLRQGKQMQALAVKLPSGLETSVLNSV-VDMYLKCGLVDEAEKCFAEMQLKDVIS 381

Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKH--------------------------------- 385
            + +  GYG HGLG++   +F+ + +H                                 
Sbjct: 382 WTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLL 441

Query: 386 ---GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
              GI+PR +HYA VVDLL RAG    A   I  MPI+  + + + LLS  ++
Sbjct: 442 ETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRV 494

Arabidopsis thaliana (taxid: 3702)

>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 170/460 (36%), Gaps = 165/460 (35%)

Query: 90  LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS------------LTAVCRY-----QP 132
           +  + ++  L  G+ +HG  +K  +   SD+ ++            L + C+      + 
Sbjct: 138 IKAAAEVSSLSLGQSLHGMAVKSAVG--SDVFVANSLIHCYFSCGDLDSACKVFTTIKEK 195

Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMD------------------------------ 162
           +V   N+MI+G+ + G  ++A++LF K                                 
Sbjct: 196 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVC 255

Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
            YI ++    N+ +   ++DMY KCGS++ A   FD   +KD V  + M+ GY       
Sbjct: 256 SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA------ 309

Query: 223 FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282
                                                 I    E   ++L S+      Q
Sbjct: 310 --------------------------------------ISEDYEAAREVLNSMP-----Q 326

Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFP-------------------------------KW 311
            ++  WNA+IS Y +NG   EA+ +F                                +W
Sbjct: 327 KDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRW 386

Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
           +  YI K   R N  V + LI MY+KCG ++ +   F+    +DV + SAM  G  +HG 
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGC 446

Query: 372 G-----------------------------------EEGWVLFHHIR-KHGIEPRHQHYA 395
           G                                   +E   LFH +   +GI P  +HYA
Sbjct: 447 GNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYA 506

Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
            +VD+L R+GY   A KFI  MPI    SV  ALL A KI
Sbjct: 507 CIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKI 546

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	462
225447423	742	PREDICTED: pentatricopeptide repeat-cont	0.655	0.408	0.390	3e-61
224126883	746	predicted protein [Populus trichocarpa]	0.658	0.407	0.383	5e-60
449451892	673	PREDICTED: pentatricopeptide repeat-cont	0.660	0.453	0.370	5e-57
449528002	658	PREDICTED: pentatricopeptide repeat-cont	0.660	0.463	0.368	6e-57
356567218	727	PREDICTED: pentatricopeptide repeat-cont	0.759	0.482	0.336	5e-53
297834086	694	predicted protein [Arabidopsis lyrata su	0.744	0.495	0.305	6e-45
334185294	694	mitochondrial editing factor 22 [Arabido	0.744	0.495	0.299	8e-43
255563405	501	pentatricopeptide repeat-containing prot	0.465	0.429	0.413	1e-42
62320270	694	hypothetical protein [Arabidopsis thalia	0.748	0.498	0.300	3e-42
225440839	705	PREDICTED: pentatricopeptide repeat-cont	0.705	0.462	0.279	1e-35

>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770 [Vitis vinifera] gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 165/423 (39%), Positives = 213/423 (50%), Gaps = 120/423 (28%)

Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFP------------------------------KW 160
           +P+V L NA+I GY+ + +  +A++++                               K 
Sbjct: 131 EPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKR 190

Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG---- 216
           +   I +  + ++V V   L+ +YAKCG V+ A + F+   D+++V  ++MI GYG    
Sbjct: 191 VHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGL 250

Query: 217 -LHEWSAFGSFDGLLSNEENEY---GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272
            +     FG       N + ++    + L    D+E LEQGK +HG ++K+GLE E DLL
Sbjct: 251 PMEALRIFGQMRQ--RNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLL 308

Query: 273 ISLTA---------VCRY------QPNVTLWNAMISGYAKNGYAEEAVKLF--------- 308
           ISLTA         V R        PNV +WNAMISGYAKNGY  EAV LF         
Sbjct: 309 ISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIR 368

Query: 309 ---------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
                                 KWM  YI K+EYRN+V VNT LIDM+AKCGSVDLA   
Sbjct: 369 TDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREV 428

Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLG----------------------------------- 372
           FDRTLDKDVV+ SAM VGYGLHG G                                   
Sbjct: 429 FDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLV 488

Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
           EEGW LFH ++ +GIE RHQHYA VVDLL R+G+ N A+ FI  MPIE  +SV  ALL A
Sbjct: 489 EEGWELFHSMKYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGA 548

Query: 433 WKI 435
            KI
Sbjct: 549 CKI 551

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa] gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 161/420 (38%), Positives = 213/420 (50%), Gaps = 116/420 (27%)

Query: 132 PNVTLRNAMISGYAKNGYAEEAVKL---------------FP---------------KWM 161
           P+V L NA++  Y+++G+   A+++               FP               + +
Sbjct: 136 PDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRV 195

Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--E 219
              I +  + ++V V   L+ +YAKCG +  A   F R +D+ +V  +++I GY  +   
Sbjct: 196 HGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQP 255

Query: 220 WSAFGSFDGLL-SNEENEY---GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275
             A   F  +  +N   ++    + L    D+E LE GK +HG +IK+GLE E DLLISL
Sbjct: 256 IEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISL 315

Query: 276 T---AVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLF------------ 308
           T   A C +             P++  WNAMISGY KNGYAEEA++LF            
Sbjct: 316 TSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDS 375

Query: 309 ------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
                              +WMD YI  SE+RN+VIVNT LID YAKCGSVD+A   FDR
Sbjct: 376 ITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDR 435

Query: 351 TLDKDVVMRSAMTVGYGLHGLG-----------------------------------EEG 375
             DKDVV+ SAM VGYGLHG G                                   EEG
Sbjct: 436 IPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEG 495

Query: 376 WVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
           W LFH +R +GIEPRHQHYA VVDLL RAG+ + A+ F+MNMPIE  +SV  ALLSA KI
Sbjct: 496 WDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKI 555

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Cucumis sativus]

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 156/421 (37%), Positives = 203/421 (48%), Gaps = 116/421 (27%)

Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDYY-------------IGKS 168
           +P++ L NA+I GY +    +  ++++         P    +              IGK 
Sbjct: 62  EPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQ 121

Query: 169 --------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-- 218
                    + +NV V   L+ MYAK G +  A + FD+  D+ VV  +++I GY  +  
Sbjct: 122 IHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGD 181

Query: 219 EWSAFGSFDGLLSNEENEYGTAL----DCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
              A   F  +          AL        ++E L QGK +HG + KLGLE E D++IS
Sbjct: 182 PMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVIS 241

Query: 275 LTA---------VCRY------QPNVTLWNAMISGYAKNGYAEEAVKLF----------- 308
           LT          V R+      +PN+ LWNAMISGYA NGY EEA+KLF           
Sbjct: 242 LTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVD 301

Query: 309 -------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
                               +W+D YI KSEYR++  VNT LIDMYAKCGS+ LA   FD
Sbjct: 302 SITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFD 361

Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEE----------------------------------- 374
           R  DKDVV+ S M +GYGLHG G+E                                   
Sbjct: 362 RVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKE 421

Query: 375 GWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
           GW LFH +  HGIEP HQHY+ VVDLL RAGY N A+ FIM+MPI+  +SV  ALLSA K
Sbjct: 422 GWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACK 481

Query: 435 I 435
           I
Sbjct: 482 I 482

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like, partial [Cucumis sativus]

 Score =  228 bits (580), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 155/421 (36%), Positives = 207/421 (49%), Gaps = 116/421 (27%)

Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDYY-------------IGKS 168
           +P++ L NA+I GY +    +  ++++         P    +              IGK 
Sbjct: 47  EPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQ 106

Query: 169 --------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-- 218
                    + +NV V   L+ MYAK G +  A + FD+  D+ VV  +++I GY  +  
Sbjct: 107 IHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGD 166

Query: 219 EWSAFGSFDGLLS-NEENEY---GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
              A   F  +   N + ++    + +    ++E L QGK +HG + KLGLE E D++IS
Sbjct: 167 PMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVIS 226

Query: 275 LTA---------VCRY------QPNVTLWNAMISGYAKNGYAEEAVKLF----------- 308
           LT          V R+      +PN+ LWNAMISGYA NGY EEA+KLF           
Sbjct: 227 LTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVD 286

Query: 309 -------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
                               +W+D YI KSEYR++  VNT LIDMYAKCGS+ LA   FD
Sbjct: 287 SITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFD 346

Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEE----------------------------------- 374
           R  DKDVV+ S M +GYGLHG G+E                                   
Sbjct: 347 RVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKE 406

Query: 375 GWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
           GW LFH +  HGIEP HQHY+ VVDLL RAGY N A+ FIM+MPI+  +SV  ALLSA K
Sbjct: 407 GWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACK 466

Query: 435 I 435
           I
Sbjct: 467 I 467

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Glycine max]

 Score =  214 bits (546), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 164/487 (33%), Positives = 227/487 (46%), Gaps = 136/487 (27%)

Query: 81  NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT-------AVCRYQ-- 131
           N ++ Y + +D S     L+Q   +H  ++  GL+    L+  L         +C  +  
Sbjct: 54  NSDSFYASLIDNSTHKRHLDQ---IHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKL 110

Query: 132 ------PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY---------------------- 163
                 P+V + NA+I  Y++N    + V+++ +WM +                      
Sbjct: 111 FDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMY-RWMRWTGVHPDGFTFPYVLKACTELLD 169

Query: 164 ---------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG 214
                     I K  + ++V V   L+ +YAKCG + +A + FD    + +V  +++I G
Sbjct: 170 FGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISG 229

Query: 215 YGLHEWS--AFGSFDGLLSNEENEYGTAL----DCSCDLEFLEQGKIVHGFMIKLGLELE 268
           Y  +  +  A   F  + +N       AL        D++ LEQG+ +HGF+IK+GLE E
Sbjct: 230 YAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDE 289

Query: 269 SDLLISLTAV---C------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF----- 308
             LLISLTA    C                NV +WNAMISGYAKNG+AEEAV LF     
Sbjct: 290 PALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMIS 349

Query: 309 -------------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
                                     +WMD Y+ KS Y +++ VNT LIDMYAKCGSV+ 
Sbjct: 350 RNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEF 409

Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLG------------------------------- 372
           A   FDR  DKDVVM SAM +GYGLHG G                               
Sbjct: 410 ARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNH 469

Query: 373 ----EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRA 428
               +EGW LFH ++   I PR++HY+ VVDLL RAGY   A  FIM +PIE  +SV  A
Sbjct: 470 SGLVKEGWELFHCMKDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGA 529

Query: 429 LLSAWKI 435
           LLSA KI
Sbjct: 530 LLSACKI 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 148/484 (30%), Positives = 220/484 (45%), Gaps = 140/484 (28%)

Query: 86  YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT-AVCRY-------------- 130
           Y + +D S     L Q   +H  ++ LGL+    L+  L  A   Y              
Sbjct: 24  YASLIDSSTHKAQLRQ---IHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLP 80

Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPK--------------------------WMDYY 164
           +P V   NA+I GY++N + ++A+ ++ K                           M  +
Sbjct: 81  RPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRF 140

Query: 165 IGKSEYR----NNVIVNTVLIDMYAKCGSVDLAPMFFD--RTLDKDVVMRSAMIVGYG-- 216
           +    +R     +V V   LI +YAKC  +  A   F+     ++ +V  +A++  Y   
Sbjct: 141 VHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQN 200

Query: 217 ------LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 270
                 L  +S     D  +  +     + L+    L+ LEQG+ +H  ++K+GLE E D
Sbjct: 201 GEPVEALEIFSQMRKMD--VKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPD 258

Query: 271 LLISLT---AVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF------- 308
           LLISL    A C               PN+ LWNAMISGYAKNG+A++A+ LF       
Sbjct: 259 LLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKD 318

Query: 309 -----------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
                                   +WMD Y+ +S+YR++V +++ LIDM+AKCGSV+ A 
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECAR 378

Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHG------------------------LG--------- 372
             FDRTLD+DVV+ SAM VGYGLHG                        LG         
Sbjct: 379 SVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSG 438

Query: 373 --EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
              EGW  F+ +  H I P+ QHYA ++DLL RAG+ + A++ I  MP++  ++V  ALL
Sbjct: 439 MVREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALL 498

Query: 431 SAWK 434
           SA K
Sbjct: 499 SACK 502

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana] gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana] gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 145/484 (29%), Positives = 218/484 (45%), Gaps = 140/484 (28%)

Query: 86  YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------------- 130
           Y + +D +     L+Q   +H  ++ LGL+    L+  L                     
Sbjct: 24  YASLIDSATHKAQLKQ---IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLP 80

Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKL---------------FPKWMDYYIGKSE------ 169
           +P +   NA+I GY++N + ++A+ +               FP  +    G S       
Sbjct: 81  RPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRF 140

Query: 170 ---------YRNNVIVNTVLIDMYAKCGSVDLAPMFFD--RTLDKDVVMRSAMIVGYG-- 216
                    +  +V V   LI +YAKC  +  A   F+     ++ +V  +A++  Y   
Sbjct: 141 VHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQN 200

Query: 217 ------LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 270
                 L  +S     D  +  +     + L+    L+ L+QG+ +H  ++K+GLE+E D
Sbjct: 201 GEPMEALEIFSQMRKMD--VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPD 258

Query: 271 LLISLT---AVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF------- 308
           LLISL    A C               PN+ LWNAMISGYAKNGYA EA+ +F       
Sbjct: 259 LLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKD 318

Query: 309 -----------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
                                   + M  Y+G+S+YR++V +++ LIDM+AKCGSV+ A 
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGAR 378

Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHG------------------------LG--------- 372
           + FDRTLD+DVV+ SAM VGYGLHG                        LG         
Sbjct: 379 LVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSG 438

Query: 373 --EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
              EGW  F+ +  H I P+ QHYA V+DLL RAG+ + A++ I  MP++  ++V  ALL
Sbjct: 439 MVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALL 498

Query: 431 SAWK 434
           SA K
Sbjct: 499 SACK 502

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563405|ref|XP_002522705.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223538055|gb|EEF39667.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/266 (41%), Positives = 148/266 (55%), Gaps = 51/266 (19%)

Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGL- 229
           +V V   L+  YAKC  + LA + F R  D+ +V  +++I GY  +     A   F+ + 
Sbjct: 179 DVFVQNGLVTFYAKCRKISLANIVFGRLSDRSIVSWTSIISGYAQNGQPIEALRIFNQMR 238

Query: 230 ---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CRYQ- 282
              +  ++    + L    D+E LE GK +HG +IK+GLE E DLLISLTA+   C    
Sbjct: 239 EVNVKPDQIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLEFEIDLLISLTAMYAKCGQVM 298

Query: 283 -----------PNVTLWNAMISGYAKNGYAEEAVKLF----------------------- 308
                      PN+ LWNAMISGYAKNGYAEEA++LF                       
Sbjct: 299 FARLFFDQVRIPNLILWNAMISGYAKNGYAEEALELFRRMITMNFGPDSITITSVILACA 358

Query: 309 -------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
                   +WM  YIG+SE+RN+  V++ LIDM++KCGSVDLA   FDR LDKDVV+ S+
Sbjct: 359 QMGSLELARWMSDYIGRSEFRNDAFVSSALIDMFSKCGSVDLARDVFDRALDKDVVLWSS 418

Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGI 387
           M +GYGLHG G+E   LF  +R+ GI
Sbjct: 419 MIMGYGLHGRGQESINLFEAMRQAGI 444

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 145/482 (30%), Positives = 217/482 (45%), Gaps = 136/482 (28%)

Query: 86  YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------------- 130
           Y + +D +     L+Q   +H  ++ LGL+    L+  L                     
Sbjct: 24  YASLIDSATHKAQLKQ---IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLP 80

Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKL---------------FPKWMDYYIGKSE------ 169
           +P +   NA+I GY++N + ++A+ +               FP  +    G S       
Sbjct: 81  RPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRF 140

Query: 170 ---------YRNNVIVNTVLIDMYAKCGSVDLAPMFFD--RTLDKDVVMRSAMIVGYGLH 218
                    +  +V V   LI +YAKC  +  A   F+     ++ +V  +A++  Y  +
Sbjct: 141 VHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQN 200

Query: 219 --EWSAFGSFDGLLSNEENEYGTAL----DCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272
                A   F  +   +      AL    +    L+ L+QG+ +H  ++K+GLE+E DLL
Sbjct: 201 GEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLL 260

Query: 273 ISLT---AVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF--------- 308
           ISL    A C               PN+ LWNAMISGYAKNGYA EA+ +F         
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVR 320

Query: 309 ---------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
                                 + M  Y+G+S+YR++V +++ LIDM+AKCGSV+ A + 
Sbjct: 321 PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLV 380

Query: 348 FDRTLDKDVVMRSAMTVGYGLHG------------------------LG----------- 372
           FDRTLD+DVV+ SAM VGYGLHG                        LG           
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMV 440

Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
            EGW  F+ +  H I P+ QHYA V+DLL RAG+ + A++ I  MP++  ++V  ALLSA
Sbjct: 441 REGWWFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500

Query: 433 WK 434
            K
Sbjct: 501 CK 502

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Vitis vinifera]

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/458 (27%), Positives = 197/458 (43%), Gaps = 132/458 (28%)

Query: 95  DLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNA 139
           DL+ L+ G+++H  + K GL+L+      L+ +   CR             + ++     
Sbjct: 42  DLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTV 101

Query: 140 MISGYAKNGYAEEAVKLFPKW------------------------------MDYYIGKSE 169
           MI GYA+ G A E++ LF K                               +D YI + +
Sbjct: 102 MIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKK 161

Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFD 227
           ++ +VI+ T +IDMYAKCG V+ A   FDR  +K+V+  SAMI  YG H     A   F 
Sbjct: 162 FQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFR 221

Query: 228 GLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR 280
            +LS+    ++    + L    DL+ L+ G+++H  + K GL+L+      L+ +   CR
Sbjct: 222 MMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCR 281

Query: 281 Y------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKW----------------- 311
                        + ++  W  MI GYA+ G A E++ LF K                  
Sbjct: 282 EIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVF 341

Query: 312 -------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
                        +D YI + +++ +VI+ T +IDM+AKCG V+ A   FDR  +K+V+ 
Sbjct: 342 ACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVIS 401

Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--------------------------- 391
            SAM   YG HG G +   LF  + + GI P                             
Sbjct: 402 WSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMW 461

Query: 392 ---------QHYARVVDLLARAGYSNHAFKFIMNMPIE 420
                    +HY  VVDLL RAG  + A K I +M +E
Sbjct: 462 EDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVE 499

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	462
TAIR|locus:2202074	809	CRR22 "CHLORORESPIRATORY REDUC	0.248	0.142	0.336	1.2e-22
TAIR|locus:2098901	783	AT3G61170 [Arabidopsis thalian	0.227	0.134	0.336	1e-20
TAIR|locus:2089333	654	AT3G16610 "AT3G16610" [Arabido	0.183	0.129	0.329	6.9e-19
TAIR|locus:2124137	871	DOT4 "DEFECTIVELY ORGANIZED TR	0.214	0.113	0.363	1e-16
TAIR|locus:4515103421	654	AT4G19191 "AT4G19191" [Arabido	0.259	0.183	0.346	1.3e-16
TAIR|locus:2825319	689	AT1G71460 "AT1G71460" [Arabido	0.196	0.132	0.377	1.1e-15
TAIR|locus:2134842	729	AT4G04370 [Arabidopsis thalian	0.495	0.314	0.279	4.7e-13
TAIR|locus:2093920	687	AT3G15930 "AT3G15930" [Arabido	0.233	0.157	0.324	1.1e-14
TAIR|locus:2162207	830	CRR21 "chlororespiratory reduc	0.707	0.393	0.243	1e-09
TAIR|locus:2132452	686	AT4G08210 "AT4G08210" [Arabido	0.222	0.150	0.320	2.2e-14

TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
 Identities = 39/116 (33%), Positives = 60/116 (51%)

Query:   301 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
             AE ++    KW+   + +S    NV V T L+DMYAKCG++ +A + FD   ++ V   +
Sbjct:   449 AELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWN 508

Query:   361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFK-FIM 415
             AM  GYG HG G+    LF  ++K  I+P    +  V+   + +G      K F M
Sbjct:   509 AMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYM 564

GO:0005739 "mitochondrion" evidence=ISM

GO:0004519 "endonuclease activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA;IMP

TAIR|locus:2098901 AT3G61170 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.0e-20, Sum P(3) = 1.0e-20
 Identities = 36/107 (33%), Positives = 61/107 (57%)

Query:   315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE 374
             YI KS + +++ VN  L+ MY KCGS++ A + F+    +D++  + + VGY  +GL E+
Sbjct:   456 YI-KSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAKNGLLED 514

Query:   375 GWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
                 F  +R  +GI P  +HYA ++DL  R+G      + +  M +E
Sbjct:   515 AQRYFDSMRTVYGITPGPEHYACMIDLFGRSGDFVKVEQLLHQMEVE 561

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089333 AT3G16610 "AT3G16610" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 6.9e-19, Sum P(4) = 6.9e-19
 Identities = 28/85 (32%), Positives = 47/85 (55%)

Query:   321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
             Y  N  +   L+DMY KCG +D+A   FD    +D+V  + M  G+G+HGLG+E   LF+
Sbjct:   440 YAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFN 499

Query:   381 HIRKHGIEPRHQHYARVVDLLARAG 405
              +++ G+ P       ++   + +G
Sbjct:   500 SMQETGVNPDEVTLLAILSACSHSG 524

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006302 "double-strand break repair" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
 Identities = 36/99 (36%), Positives = 58/99 (58%)

Query:   315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE 374
             YI ++ Y ++  V   L+DMYAKCG++ LA M FD    KD+V  + M  GYG+HG G+E
Sbjct:   524 YIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKE 583

Query:   375 GWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKF 413
                LF+ +R+ GIE     +  ++   + +G  +  ++F
Sbjct:   584 AIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRF 622

GO:0009507 "chloroplast" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:4515103421 AT4G19191 "AT4G19191" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 1.3e-16, Sum P(4) = 1.3e-16
 Identities = 43/124 (34%), Positives = 62/124 (50%)

Query:   282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
             +P++    ++ISG  K G  E   K      D Y  K   R+NV++   LIDMY+KCGS+
Sbjct:   354 KPDLVTLLSLISGCGKFGSLETG-KWIDARADIYGCK---RDNVMICNALIDMYSKCGSI 409

Query:   342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL 401
               A   FD T +K VV  + M  GY L+G+  E   LF  +     +P H  +  V+   
Sbjct:   410 HEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQAC 469

Query:   402 ARAG 405
             A +G
Sbjct:   470 AHSG 473

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2825319 AT1G71460 "AT1G71460" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
 Identities = 37/98 (37%), Positives = 55/98 (56%)

Query:   172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG--YGLHEWSAFGSFDGL 229
             N+V + T L+DMY KCG V LA   FD  +++D+V+  AMI G  +   +W A G F  +
Sbjct:   247 NSVFLKTSLVDMYFKCGKVGLARRVFDEIVERDIVVWGAMIAGLAHNKRQWEALGLFRTM 306

Query:   230 LSNEE---NEY--GTALDCSCDLEFLEQGKIVHGFMIK 262
             +S E+   N     T L    D++ L+ GK VH  ++K
Sbjct:   307 ISEEKIYPNSVILTTILPVLGDVKALKLGKEVHAHVLK 344

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134842 AT4G04370 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
 Identities = 72/258 (27%), Positives = 113/258 (43%)

Query:   164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
             Y+ +  Y  +      LI MYAKCG +D + + F+R  ++D+V  +A+I GY  +     
Sbjct:   371 YVLRHGYTLDTPALNSLITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYAQN----V 426

Query:   224 GSFDGLLSNEENEYGTALDC-SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282
                  LL  EE ++ T     S  +  L Q     G  + +G  +   ++ S    C   
Sbjct:   427 DLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAG-ALPVGKLIHCIVIRSFIRPCSLV 485

Query:   283 PNVTLWNAMISGYAKNGYAEEAVKLFPK--WMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
                    A++  Y+K GY E A + F    W D           V+   +LI  Y   G 
Sbjct:   486 DT-----ALVDMYSKCGYLEAAQRCFDSISWKD-----------VVSWGILIAGYGFHGK 529

Query:   341 VDLA----PMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH-IRKHGIEPRHQHYA 395
              D+A      F    ++ + V+  A+      +G+ ++G  +F   +R  G+EP H+H A
Sbjct:   530 GDIALEIYSEFLHSGMEPNHVIFLAVLSSCSHNGMVQQGLKIFSSMVRDFGVEPNHEHLA 589

Query:   396 RVVDLLARAGYSNHAFKF 413
              VVDLL RA     AFKF
Sbjct:   590 CVVDLLCRAKRIEDAFKF 607

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2093920 AT3G15930 "AT3G15930" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 35/108 (32%), Positives = 54/108 (50%)

Query:   310 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
             +W+  YI K++ +N+V+V   LIDMY KCG  + A   F     +D    +AM VG   +
Sbjct:   388 EWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANN 447

Query:   370 GLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
             G G+E   +F  ++   I+P    Y  V+     +G  + A KF   M
Sbjct:   448 GQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKM 495

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162207 CRR21 "chlororespiratory reduction 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 89/366 (24%), Positives = 161/366 (43%)

Query:    71 AFGSFDGLLSNE--ENEYGTALDC-SCD-LEFLEQGKIVHGFMIKLGLE----LESDL-- 120
             A   F  +L NE   + +     C +C  L++   G+ VHG+++K GLE    + S L  
Sbjct:   157 ALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLAD 216

Query:   121 -------LISLTAVCRYQP--NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR 171
                    L   + V    P  N    NA++ GY +NG  EEA++LF        G    R
Sbjct:   217 MYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQ--GVEPTR 274

Query:   172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS 231
               V V+T L    A  G V+         +   + + +  I+G  L     F    GL+ 
Sbjct:   275 --VTVSTCL-SASANMGGVEEGKQSHAIAIVNGMELDN--ILGTSLLN---FYCKVGLIE 326

Query:   232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM 291
               E  +    D   + + +    I+ G+ ++ GL  ++  +  L  + + + +      +
Sbjct:   327 YAEMVF----DRMFEKDVVTWNLIISGY-VQQGLVEDAIYMCQLMRLEKLKYDCVTLATL 381

Query:   292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
             +S  A+     E +KL  K +  Y  +  + +++++ + ++DMYAKCGS+  A   FD T
Sbjct:   382 MSAAART----ENLKL-GKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDST 436

Query:   352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAF 411
             ++KD+++ + +   Y   GL  E   LF+ ++  G+ P    +  ++  L R G  + A 
Sbjct:   437 VEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAK 496

Query:   412 KFIMNM 417
                + M
Sbjct:   497 DMFLQM 502

GO:0009507 "chloroplast" evidence=ISM

GO:0016556 "mRNA modification" evidence=RCA;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2132452 AT4G08210 "AT4G08210" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
 Identities = 33/103 (32%), Positives = 51/103 (49%)

Query:   318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
             K  Y +  +  T L+DMY KCG +D   + FD  L++DVV  + + VG+G +G  EE + 
Sbjct:   471 KKGYESEPVTATALVDMYVKCGEIDNGVVLFDGMLERDVVSWTGIIVGFGQNGRVEEAFR 530

Query:   378 LFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
              FH +   GIEP    +  ++     +G    A   +  M  E
Sbjct:   531 YFHKMINIGIEPNKVTFLGLLSACRHSGLLEEARSTLETMKSE 573

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	462
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-26
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-23
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-14
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-11
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-05
pfam01535	31	pfam01535, PPR, PPR repeat	4e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.001
pfam01535	31	pfam01535, PPR, PPR repeat	0.004

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  112 bits (282), Expect = 2e-26
 Identities = 128/545 (23%), Positives = 204/545 (37%), Gaps = 163/545 (29%)

Query: 1   MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDG- 49
           M  A V P+  T P VL+ C  +P L  G  VH  +   GF          +  Y+  G 
Sbjct: 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237

Query: 50  ------LFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYG---------------- 87
                 +FDR               W+A  S  G   N E   G                
Sbjct: 238 VVSARLVFDRMPRR-------DCISWNAMIS--GYFENGECLEGLELFFTMRELSVDPDL 288

Query: 88  ---TALDCSCDLEFLEQ-GKIVHGFMIKLGLELESDLLISLTAV---------------- 127
              T++  +C+L   E+ G+ +HG+++K G  ++  +  SL  +                
Sbjct: 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348

Query: 128 --CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYY------------------IG- 166
              +   +     AMISGY KNG  ++A++ +   M+                    +G 
Sbjct: 349 METK---DAVSWTAMISGYEKNGLPDKALETY-ALMEQDNVSPDEITIASVLSACACLGD 404

Query: 167 ------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG 214
                       +    + V+V   LI+MY+KC  +D A   F    +KDV+  +++I G
Sbjct: 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG 464

Query: 215 YGLHEWSAFGSFDGL-------LSNEENE--YGTALDCSCDLEFLEQGKIVHGFMIKLGL 265
             L+       F+ L       L+ + N      AL     +  L  GK +H  +++ G+
Sbjct: 465 LRLN----NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520

Query: 266 ELESDL---LISLTAVC-----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311
             +  L   L+ L   C            ++ +V  WN +++GY  +G    AV+LF + 
Sbjct: 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580

Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
           +     +S    + +    L+     C                    RS M         
Sbjct: 581 V-----ESGVNPDEVTFISLL-----CA-----------------CSRSGMVT------- 606

Query: 372 GEEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
             +G   FH +  K+ I P  +HYA VVDLL RAG    A+ FI  MPI    +V  ALL
Sbjct: 607 --QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALL 664

Query: 431 SAWKI 435
           +A +I
Sbjct: 665 NACRI 669

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  101 bits (253), Expect = 6e-23
 Identities = 85/353 (24%), Positives = 140/353 (39%), Gaps = 94/353 (26%)

Query: 138 NAMISGYAKNGYAEEAVKLFPK-WMDY---------------------YIG--------K 167
             +I G    G   EA  LF + W D                        G        K
Sbjct: 193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252

Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA----- 222
           +    +  V+  LIDMY+KCG ++ A   FD   +K  V  ++M+ GY LH +S      
Sbjct: 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312

Query: 223 -FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV--- 278
            +   D  +S ++  +   +     L  LE  K  H  +I+ G  L+   +++ TA+   
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD---IVANTALVDL 369

Query: 279 -CRY--------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 323
             ++              + N+  WNA+I+GY  +G   +AV++F +     I +    N
Sbjct: 370 YSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER----MIAEGVAPN 425

Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI- 382
           +V    VL    + C                               GL E+GW +F  + 
Sbjct: 426 HVTFLAVL----SACR----------------------------YSGLSEQGWEIFQSMS 453

Query: 383 RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
             H I+PR  HYA +++LL R G  + A+  I   P +  +++  ALL+A +I
Sbjct: 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRI 506

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 69/284 (24%), Positives = 98/284 (34%), Gaps = 84/284 (29%)

Query: 138 NAMISGYAKNGYAEEAVKLFPK--W--------------------MDYYIGKS------- 168
           N ++ GYAK GY +EA+ L+ +  W                     D   G+        
Sbjct: 156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215

Query: 169 -EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
             +  +V V   LI MY KCG V  A + FDR   +D +  +AMI GY            
Sbjct: 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY------------ 263

Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL--LISLTAVCRYQPNV 285
               N E   G  L                 F     L ++ DL  + S+ + C    + 
Sbjct: 264 --FENGECLEGLEL-----------------FFTMRELSVDPDLMTITSVISACELLGDE 304

Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
            L   M     K G+A                      +V V   LI MY   GS   A 
Sbjct: 305 RLGREMHGYVVKTGFA---------------------VDVSVCNSLIQMYLSLGSWGEAE 343

Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
             F R   KD V  +AM  GY  +GL ++    +  + +  + P
Sbjct: 344 KVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 30/136 (22%)

Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPK--W--------------------MDYYIGKS-- 319
           ++  WN ++ GYAK GY +EA+ L+ +  W                     D   G+   
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210

Query: 320 ------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
                  +  +V V   LI MY KCG V  A + FDR   +D +  +AM  GY  +G   
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECL 270

Query: 374 EGWVLFHHIRKHGIEP 389
           EG  LF  +R+  ++P
Sbjct: 271 EGLELFFTMRELSVDP 286

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 64.5 bits (157), Expect = 5e-11
 Identities = 48/202 (23%), Positives = 76/202 (37%), Gaps = 45/202 (22%)

Query: 254 KIVHGFMIKLGLE-------------LESDLLISLTAVCRYQP--NVTLWNAMISGYAKN 298
           K V+  +   G E             ++  +LI    +    P  N+  W  +I G    
Sbjct: 143 KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDA 202

Query: 299 GYAEEAVKLFPK-WMDY---------------------YIG--------KSEYRNNVIVN 328
           G   EA  LF + W D                        G        K+    +  V+
Sbjct: 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262

Query: 329 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
             LIDMY+KCG ++ A   FD   +K  V  ++M  GY LHG  EE   L++ +R  G+ 
Sbjct: 263 CALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322

Query: 389 PRHQHYARVVDLLARAGYSNHA 410
                ++ ++ + +R     HA
Sbjct: 323 IDQFTFSIMIRIFSRLALLEHA 344

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 45.5 bits (109), Expect = 7e-07
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337
           P+V  +N +I GY K G  EEA+KLF   M     K   + NV   ++LID   K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLF-NEM----KKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 186
           P+V   N +I GY K G  EEA+KLF   M     K   + NV   ++LID   K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLF-NEM----KKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 12/21 (57%), Positives = 17/21 (80%)

Query: 288 WNAMISGYAKNGYAEEAVKLF 308
           +N++ISGY K G  EEA++LF
Sbjct: 3   YNSLISGYCKAGKLEEALELF 23

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 36.2 bits (85), Expect = 0.001
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLF 308
            +P+V  +N +I G  + G  +EAV+L 
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELL 30

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 12/20 (60%), Positives = 16/20 (80%)

Query: 138 NAMISGYAKNGYAEEAVKLF 157
           N++ISGY K G  EEA++LF
Sbjct: 4   NSLISGYCKAGKLEEALELF 23

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	462
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.93
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.85
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.78
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.78
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.78
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.77
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.76
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.75
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.73
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.73
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.72
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.67
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.67
PRK14574	822	hmsH outer membrane protein; Provisional	99.63
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.63
PRK14574	822	hmsH outer membrane protein; Provisional	99.62
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.61
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.59
KOG2076	895	consensus RNA polymerase III transcription factor	99.48
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.43
KOG2003	840	consensus TPR repeat-containing protein [General f	99.43
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.42
PF13041	50	PPR_2: PPR repeat family	99.4
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.39
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.38
KOG1126	638	consensus DNA-binding cell division cycle control	99.37
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.37
PF13041	50	PPR_2: PPR repeat family	99.36
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.36
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.34
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.34
KOG2076	895	consensus RNA polymerase III transcription factor	99.33
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.3
KOG1126	638	consensus DNA-binding cell division cycle control	99.29
KOG2003	840	consensus TPR repeat-containing protein [General f	99.26
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.24
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.23
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.2
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.18
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.17
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.15
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.14
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.13
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.07
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.04
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.03
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.01
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.01
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.0
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.98
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.97
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.97
PRK12370	553	invasion protein regulator; Provisional	98.92
PRK12370	553	invasion protein regulator; Provisional	98.89
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.89
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.88
PF12854	34	PPR_1: PPR repeat	98.87
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.83
KOG1129	478	consensus TPR repeat-containing protein [General f	98.83
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.83
PF12854	34	PPR_1: PPR repeat	98.82
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.78
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.74
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.73
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.72
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.69
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.69
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.67
PRK11189	296	lipoprotein NlpI; Provisional	98.65
KOG1129	478	consensus TPR repeat-containing protein [General f	98.61
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.59
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.59
PRK11189	296	lipoprotein NlpI; Provisional	98.57
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.55
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.55
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.55
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.51
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.51
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.5
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.49
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.46
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.43
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.43
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.42
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.38
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.36
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.32
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.31
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.27
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.25
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.22
PRK04841	903	transcriptional regulator MalT; Provisional	98.21
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.19
KOG1125	579	consensus TPR repeat-containing protein [General f	98.19
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.18
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.17
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.16
KOG1125	579	consensus TPR repeat-containing protein [General f	98.12
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.11
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.08
PRK04841	903	transcriptional regulator MalT; Provisional	98.08
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.04
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.03
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.02
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.02
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.0
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.99
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.96
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.94
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.93
PRK15359	144	type III secretion system chaperone protein SscB;	97.9
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.89
PRK15359	144	type III secretion system chaperone protein SscB;	97.88
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.87
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.86
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.82
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.81
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.81
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.8
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.78
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.77
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.77
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.76
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.75
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.75
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.73
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.68
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.62
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.61
PLN02789	320	farnesyltranstransferase	97.6
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.57
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.55
PLN02789	320	farnesyltranstransferase	97.55
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.53
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.53
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.53
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.5
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.49
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.39
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.39
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.37
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.33
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.32
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.31
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.29
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.26
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.25
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.24
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.24
KOG0553	304	consensus TPR repeat-containing protein [General f	97.23
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.14
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.12
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.1
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.09
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.06
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.02
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.99
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.97
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.96
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.94
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.93
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.9
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.87
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.81
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.77
PF12688	120	TPR_5: Tetratrico peptide repeat	96.75
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.73
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.7
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.69
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.68
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.62
KOG0553	304	consensus TPR repeat-containing protein [General f	96.55
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.54
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.54
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.5
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.48
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.46
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.42
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.41
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.34
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.31
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.3
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.25
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.22
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.13
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.11
PF13371	73	TPR_9: Tetratricopeptide repeat	96.1
PF12688	120	TPR_5: Tetratrico peptide repeat	96.01
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.96
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.94
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.91
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.88
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.85
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.78
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.73
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.7
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.64
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.63
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.62
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.6
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.56
PRK10803	263	tol-pal system protein YbgF; Provisional	95.55
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.55
PRK10803	263	tol-pal system protein YbgF; Provisional	95.53
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.5
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.44
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.09
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	94.92
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	94.83
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	94.81
KOG1585	308	consensus Protein required for fusion of vesicles	94.69
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	94.64
KOG3941	406	consensus Intermediate in Toll signal transduction	94.59
PF13371	73	TPR_9: Tetratricopeptide repeat	94.56
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.55
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.52
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.5
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	94.36
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.12
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.12
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.02
PRK15331	165	chaperone protein SicA; Provisional	93.98
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.81
KOG3941	406	consensus Intermediate in Toll signal transduction	93.77
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.48
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	93.27
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	93.19
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	92.93
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.92
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.9
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	92.76
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	92.11
KOG2610	491	consensus Uncharacterized conserved protein [Funct	91.88
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	91.72
PRK15331	165	chaperone protein SicA; Provisional	91.49
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.33
PF13762	145	MNE1: Mitochondrial splicing apparatus component	91.08
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.01
PF13428	44	TPR_14: Tetratricopeptide repeat	90.94
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.82
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	90.76
KOG1585	308	consensus Protein required for fusion of vesicles	90.7
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	90.39
PF13512	142	TPR_18: Tetratricopeptide repeat	90.38
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	90.33
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	89.92
PF13431	34	TPR_17: Tetratricopeptide repeat	89.91
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	89.82
COG1747	711	Uncharacterized N-terminal domain of the transcrip	89.77
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	89.52
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	89.43
PF13929	292	mRNA_stabil: mRNA stabilisation	89.09
PRK11906	458	transcriptional regulator; Provisional	88.81
KOG1941	518	consensus Acetylcholine receptor-associated protei	88.68
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	88.61
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	88.33
COG3118	304	Thioredoxin domain-containing protein [Posttransla	88.31
PF13428	44	TPR_14: Tetratricopeptide repeat	88.27
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	88.26
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	87.91
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	87.64
COG4105	254	ComL DNA uptake lipoprotein [General function pred	87.28
KOG4555	175	consensus TPR repeat-containing protein [Function	87.25
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	87.15
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	87.03
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	86.29
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	86.22
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	86.21
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	86.21
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	86.17
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	86.03
COG0457	291	NrfG FOG: TPR repeat [General function prediction	85.85
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	85.42
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	84.83
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	84.74
PRK09687	280	putative lyase; Provisional	84.71
PF13929	292	mRNA_stabil: mRNA stabilisation	84.59
COG1747	711	Uncharacterized N-terminal domain of the transcrip	84.58
PRK09687	280	putative lyase; Provisional	84.15
PF13431	34	TPR_17: Tetratricopeptide repeat	84.12
PF13512	142	TPR_18: Tetratricopeptide repeat	83.63
KOG4555	175	consensus TPR repeat-containing protein [Function	83.6
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	83.53
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	83.02
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	83.02
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	82.74
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	82.47
KOG4570	418	consensus Uncharacterized conserved protein [Funct	82.4
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	82.38
COG3947	361	Response regulator containing CheY-like receiver a	82.15
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	82.12
KOG4570	418	consensus Uncharacterized conserved protein [Funct	81.62
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.52
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	81.17
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	81.02
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	80.82
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	80.1

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.2e-64  Score=518.43  Aligned_cols=451  Identities=23%  Similarity=0.318  Sum_probs=405.5

Q ss_pred             CCCCCCCCCCCChHHHHHhhccCCCCccchhhhHhHhhhCchh---------------------hhhhhcCCCCCceeeh
Q 036356            1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV---------------------CYLFDGLFDRTIVFLD   59 (462)
Q Consensus         1 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~   59 (462)
                      |.+.|++|+..+|..++.+|.+.+.++.+.+++..+.+.+..+                     .++|+.|++||+++||
T Consensus        77 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n  156 (857)
T PLN03077         77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWN  156 (857)
T ss_pred             HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHH
Confidence            4567899999999999999999999999999999888777543                     7899999999999999


Q ss_pred             hh---hccCCChhhHHHHHHhh----cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH-----HHHHhhh
Q 036356           60 LY---HLWSRTEWSAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-----LISLTAV  127 (462)
Q Consensus        60 ~~---~~~~~~~~~A~~~~~~m----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-----l~~~~~~  127 (462)
                      .+   |++.|++++|+++|++|    ..||..||+++|++|++.++++.+.+++.+|.+.|+  .++.     ++.+|++
T Consensus       157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~n~Li~~y~k  234 (857)
T PLN03077        157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF--ELDVDVVNALITMYVK  234 (857)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC--CcccchHhHHHHHHhc
Confidence            99   99999999999999999    889999999999999999999999999999999998  5544     9999999


Q ss_pred             cC------------CCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh------------------------------hhhh
Q 036356          128 CR------------YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM------------------------------DYYI  165 (462)
Q Consensus       128 ~~------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~------------------------------~~~~  165 (462)
                      +|            ..||..+||+||.+|++.|++++|+++|++|.                              |..+
T Consensus       235 ~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~  314 (857)
T PLN03077        235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV  314 (857)
T ss_pred             CCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            99            78899999999999999999999999999995                              4445


Q ss_pred             hhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc--hHHHHHHHhhhc----CCcchHHH
Q 036356          166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS----NEENEYGT  239 (462)
Q Consensus       166 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~----~~~~~~~~  239 (462)
                      .+.|+.||..+||+|+.+|++.|++++|.++|++|..||..+||.+|.+|++.|  ++|+++|++|..    ||..||+.
T Consensus       315 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~  394 (857)
T PLN03077        315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS  394 (857)
T ss_pred             HHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence            566778888889999999999999999999999999999999999999999999  999999999977    99999999


Q ss_pred             HHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHh---hc------------CCCCHhHHHHHHHHHHcCCChhHH
Q 036356          240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CR------------YQPNVTLWNAMISGYAKNGYAEEA  304 (462)
Q Consensus       240 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~------------~~~~~~~~~~li~~~~~~~~~~~a  304 (462)
                      ++.+|++.|+++.|.++++.+.+.|+.|+..++++|+.+   ||            ..+|..+|+.+|.+|++.|+.++|
T Consensus       395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA  474 (857)
T PLN03077        395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA  474 (857)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999999999999999999   33            678999999999999999999999


Q ss_pred             HHHhhHHH-----------------------------HHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCC
Q 036356          305 VKLFPKWM-----------------------------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD  355 (462)
Q Consensus       305 ~~~~~~~~-----------------------------~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  355 (462)
                      ..+|.+|.                             +..+.+.|+.++..++|+||++|++.|++++|.++|+.+ .+|
T Consensus       475 ~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d  553 (857)
T PLN03077        475 LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKD  553 (857)
T ss_pred             HHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCC
Confidence            99998853                             233445556666666677778888899999999999998 889


Q ss_pred             ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHH
Q 036356          356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM----PIELRLSVRRALLS  431 (462)
Q Consensus       356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~  431 (462)
                      ..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|    ++.|+..+|+.++.
T Consensus       554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~  633 (857)
T PLN03077        554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD  633 (857)
T ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988    78899999999999


Q ss_pred             HHHccCChHHHHHHHHhhhhcCCCCC
Q 036356          432 AWKIPMQQWENMLQTIRGIDEGEKTD  457 (462)
Q Consensus       432 ~~~~~~~~~~a~~~~~~~~~~~~~pd  457 (462)
                      +|++.|+.++|...+.+|   .+.||
T Consensus       634 ~l~r~G~~~eA~~~~~~m---~~~pd  656 (857)
T PLN03077        634 LLGRAGKLTEAYNFINKM---PITPD  656 (857)
T ss_pred             HHHhCCCHHHHHHHHHHC---CCCCC
Confidence            999999999999888777   25555

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=6.4e-62  Score=501.43  Aligned_cols=423  Identities=24%  Similarity=0.316  Sum_probs=369.1

Q ss_pred             CCCCCCCCCCCChHHHHHhhccCCCCccchhhhHhHhhhCchh---------------------hhhhhcCCCCCceeeh
Q 036356            1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV---------------------CYLFDGLFDRTIVFLD   59 (462)
Q Consensus         1 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~   59 (462)
                      |+..|+.||..||+.+|++|+..+++..+.+++..+.+.|+.+                     .++|+.|+.||+++||
T Consensus       178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n  257 (857)
T PLN03077        178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWN  257 (857)
T ss_pred             HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhH
Confidence            4567999999999999999999999999999999999888766                     8899999999999999


Q ss_pred             hh---hccCCChhhHHHHHHhh----cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH-----HHHHhhh
Q 036356           60 LY---HLWSRTEWSAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-----LISLTAV  127 (462)
Q Consensus        60 ~~---~~~~~~~~~A~~~~~~m----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-----l~~~~~~  127 (462)
                      ++   |++.|++++|+++|++|    ..||..||+.+|.+|++.|+++.|.+++..|.+.|+  .+|.     ++.+|++
T Consensus       258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~--~~d~~~~n~Li~~y~k  335 (857)
T PLN03077        258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF--AVDVSVCNSLIQMYLS  335 (857)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--ccchHHHHHHHHHHHh
Confidence            99   99999999999999999    899999999999999999999999999999999999  5555     9999999


Q ss_pred             cC------------CCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHH
Q 036356          128 CR------------YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM  195 (462)
Q Consensus       128 ~~------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  195 (462)
                      +|            ..||..+||++|.+|++.|++++|+++|++|     ...|+.||..||++++.+|++.|+++.|.+
T Consensus       336 ~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M-----~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~  410 (857)
T PLN03077        336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM-----EQDNVSPDEITIASVLSACACLGDLDVGVK  410 (857)
T ss_pred             cCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHH-----HHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence            99            7899999999999999999999999999999     788888888888888888888888888888


Q ss_pred             HhhccC----CCCcchHHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcch
Q 036356          196 FFDRTL----DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES  269 (462)
Q Consensus       196 ~~~~m~----~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  269 (462)
                      +++.|.    .++..+||.+|.+|++.|  ++|.++|++|.++|..+|++++.+|++.|+.++|..+|++|.+ ++.||.
T Consensus       411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~  489 (857)
T PLN03077        411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNS  489 (857)
T ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCH
Confidence            888776    367778888888888888  8888888888888888888888888888888888888888875 588888


Q ss_pred             HHHHHHHHhhc-------------------CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHH
Q 036356          270 DLLISLTAVCR-------------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV  330 (462)
Q Consensus       270 ~~~~~l~~~~~-------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  330 (462)
                      .||+.++.+|.                   ..+|..++|++|++|++.|++++|.++|+.     +     .||..+||+
T Consensus       490 ~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~-----~-----~~d~~s~n~  559 (857)
T PLN03077        490 VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-----H-----EKDVVSWNI  559 (857)
T ss_pred             hHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh-----c-----CCChhhHHH
Confidence            88888887643                   678888888888888888888888888876     3     678888888


Q ss_pred             HHHHHHhcCCcchHHHHhccCC----CCCccchHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCHhHHHHHHHHHHhcC
Q 036356          331 LIDMYAKCGSVDLAPMFFDRTL----DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAG  405 (462)
Q Consensus       331 li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g  405 (462)
                      +|.+|++.|+.++|.++|++|.    .||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|++++++|++.|
T Consensus       560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G  639 (857)
T PLN03077        560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG  639 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence            8888888888888888888886    4888888888888888888888888888888 4588888888888888888888


Q ss_pred             ChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH
Q 036356          406 YSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWE  441 (462)
Q Consensus       406 ~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~  441 (462)
                      ++++|.+++++|+++||..+|++|+.+|...|+.+.
T Consensus       640 ~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~  675 (857)
T PLN03077        640 KLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL  675 (857)
T ss_pred             CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Confidence            888888888888888888888888887765554443

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=8.8e-62  Score=492.30  Aligned_cols=401  Identities=14%  Similarity=0.133  Sum_probs=366.4

Q ss_pred             CCCCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhhcCCCc
Q 036356            7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGLLSNEE   83 (462)
Q Consensus         7 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m~~~~~   83 (462)
                      +++...|..+++.|++.|++++|.++|+.|.+.|+.+         ++...++.+   +.+.|..++|+.+|+.|..||.
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~---------~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~  437 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLD---------MDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTL  437 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCC---------chHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCH
Confidence            4677789999999999999999999999999988653         566666666   8889999999999999966999


Q ss_pred             chHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhh
Q 036356           84 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY  163 (462)
Q Consensus        84 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  163 (462)
                      .+|+.+|++|++.|+++.|.++|++|.+.|+                .||..+|++||.+|++.|++++|.++|++|   
T Consensus       438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl----------------~pD~~tynsLI~~y~k~G~vd~A~~vf~eM---  498 (1060)
T PLN03218        438 STFNMLMSVCASSQDIDGALRVLRLVQEAGL----------------KADCKLYTTLISTCAKSGKVDAMFEVFHEM---  498 (1060)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC----------------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHH---
Confidence            9999999999999999999999999999999                899999999999999999999999999999   


Q ss_pred             hhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC----CCCcchHHHHHHHHHhCc--hHHHHHHHhhhc------
Q 036356          164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL----DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS------  231 (462)
Q Consensus       164 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~------  231 (462)
                        .+.|+.||..+|+++|.+|++.|++++|.++|++|.    .||..+|+.+|.+|++.|  ++|.++|++|..      
T Consensus       499 --~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~  576 (1060)
T PLN03218        499 --VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID  576 (1060)
T ss_pred             --HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence              889999999999999999999999999999999996    489999999999999999  999999999953      


Q ss_pred             CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHH
Q 036356          232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW  311 (462)
Q Consensus       232 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  311 (462)
                      ||..+|++++.+|++.|++++|.++|+.|.+.|+.                |+..+|+.+|.+|++.|++++|.++|.+ 
T Consensus       577 PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~----------------p~~~tynsLI~ay~k~G~~deAl~lf~e-  639 (1060)
T PLN03218        577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK----------------GTPEVYTIAVNSCSQKGDWDFALSIYDD-  639 (1060)
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----------------CChHHHHHHHHHHHhcCCHHHHHHHHHH-
Confidence            89999999999999999999999999999999975                8888999999999999999999999998 


Q ss_pred             HHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC----CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036356          312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL----DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI  387 (462)
Q Consensus       312 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  387 (462)
                          |...|+.||..+|+++|++|++.|++++|.++|++|.    .||..+|++||.+|++.|++++|.++|++|.+.|+
T Consensus       640 ----M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~  715 (1060)
T PLN03218        640 ----MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL  715 (1060)
T ss_pred             ----HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence                7788999999999999999999999999999999887    47888999999999999999999999999998899


Q ss_pred             CCCHhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcCCCCCC
Q 036356          388 EPRHQHYARVVDLLARAGYSNHAFKFIMNM---PIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTDK  458 (462)
Q Consensus       388 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~pd~  458 (462)
                      .||..+|+.||.+|++.|++++|.++|++|   ++.||..+|++++.+|++.|+.++|...+.+|++.|+.||.
T Consensus       716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~  789 (1060)
T PLN03218        716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL  789 (1060)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence            999999999999999999999999999988   78899999999999999999999999999999999998874

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.1e-61  Score=485.18  Aligned_cols=413  Identities=20%  Similarity=0.218  Sum_probs=395.3

Q ss_pred             CCCCCCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhhcCC
Q 036356            5 WVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGLLSN   81 (462)
Q Consensus         5 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m~~~   81 (462)
                      ++.||..||+.++.+|++.++++.+.+++..|.+.|+.          ||..+||.+   |++.|++++|.++|++|..|
T Consensus       118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~----------~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~  187 (697)
T PLN03081        118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE----------PDQYMMNRVLLMHVKCGMLIDARRLFDEMPER  187 (697)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----------cchHHHHHHHHHHhcCCCHHHHHHHHhcCCCC
Confidence            57899999999999999999999999999999999985          699999999   99999999999999999889


Q ss_pred             CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356           82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM  161 (462)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  161 (462)
                      |..+|+++|.+|++.|++++|.++|++|.+.|+                .||..+|+.++.+|++.|+.+.+.+++..+ 
T Consensus       188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~----------------~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~-  250 (697)
T PLN03081        188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGS----------------DAEPRTFVVMLRASAGLGSARAGQQLHCCV-  250 (697)
T ss_pred             CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC----------------CCChhhHHHHHHHHhcCCcHHHHHHHHHHH-
Confidence            999999999999999999999999999999999                999999999999999999999999999998 


Q ss_pred             hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc--hHHHHHHHhhhc----CCcc
Q 036356          162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS----NEEN  235 (462)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~----~~~~  235 (462)
                          .+.|+.||..+||+|+++|+++|++++|.++|++|.++|..+||.+|.+|++.|  ++|+++|++|.+    ||..
T Consensus       251 ----~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~  326 (697)
T PLN03081        251 ----LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF  326 (697)
T ss_pred             ----HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence                899999999999999999999999999999999999999999999999999999  999999999976    9999


Q ss_pred             hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHh---hc------------CCCCHhHHHHHHHHHHcCCC
Q 036356          236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CR------------YQPNVTLWNAMISGYAKNGY  300 (462)
Q Consensus       236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~------------~~~~~~~~~~li~~~~~~~~  300 (462)
                      ||++++.+|++.|++++|.++++.|.+.|+.||..++++|+.+   ||            ..||..+||+||.+|++.|+
T Consensus       327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~  406 (697)
T PLN03081        327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR  406 (697)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999   44            67999999999999999999


Q ss_pred             hhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC-----CCCccchHHHHHHHHhcCChHHH
Q 036356          301 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL-----DKDVVMRSAMTVGYGLHGLGEEG  375 (462)
Q Consensus       301 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a  375 (462)
                      .++|+++|++     |...|+.||..||++++.+|++.|++++|.++|+.|.     .|+..+|+.++.+|++.|++++|
T Consensus       407 ~~~A~~lf~~-----M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA  481 (697)
T PLN03081        407 GTKAVEMFER-----MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA  481 (697)
T ss_pred             HHHHHHHHHH-----HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence            9999999999     7789999999999999999999999999999999996     38999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHccCChHHHHHHHHhhhhcC
Q 036356          376 WVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLSAWKIPMQQWENMLQTIRGIDEG  453 (462)
Q Consensus       376 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  453 (462)
                      .+++++|   ++.|+..+|++|+.+|...|+++.|..+++++ ++.|+ ..+|..|+..|++.|++++|...+.+|.+.|
T Consensus       482 ~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g  558 (697)
T PLN03081        482 YAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG  558 (697)
T ss_pred             HHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            9998876   58999999999999999999999999999998 77775 6799999999999999999999999999999


Q ss_pred             CCC
Q 036356          454 EKT  456 (462)
Q Consensus       454 ~~p  456 (462)
                      +.+
T Consensus       559 ~~k  561 (697)
T PLN03081        559 LSM  561 (697)
T ss_pred             Ccc
Confidence            854

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=5.3e-61  Score=486.59  Aligned_cols=414  Identities=14%  Similarity=0.159  Sum_probs=383.2

Q ss_pred             CCCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh----cC
Q 036356            8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL----LS   80 (462)
Q Consensus         8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m----~~   80 (462)
                      ||..||+.||.+|++.|+++.|.++|+.|.+.|+.          ||..+|+.+   |++.|++++|.++|++|    ..
T Consensus       435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~----------pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~  504 (1060)
T PLN03218        435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLK----------ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE  504 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC----------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC
Confidence            89999999999999999999999999999999984          699999999   99999999999999999    68


Q ss_pred             CCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356           81 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus        81 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      ||..+|+.+|.+|++.|++++|.++|++|.+.|+                .||..+|+.||.+|++.|++++|.++|++|
T Consensus       505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv----------------~PD~vTYnsLI~a~~k~G~~deA~~lf~eM  568 (1060)
T PLN03218        505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV----------------KPDRVVFNALISACGQSGAVDRAFDVLAEM  568 (1060)
T ss_pred             CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999                999999999999999999999999999998


Q ss_pred             hhhhhhh--cCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC----CCcchHHHHHHHHHhCc--hHHHHHHHhhhc-
Q 036356          161 MDYYIGK--SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD----KDVVMRSAMIVGYGLHE--WSAFGSFDGLLS-  231 (462)
Q Consensus       161 ~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~--~~a~~~~~~m~~-  231 (462)
                           ..  .|+.||..+|+++|.+|++.|++++|.++|++|.+    |+..+|+.+|.+|++.|  ++|.++|++|.. 
T Consensus       569 -----~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        569 -----KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             -----HHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence                 44  67999999999999999999999999999999974    57799999999999999  999999999998 


Q ss_pred             ---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhc-------------------CCCCHhHHH
Q 036356          232 ---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR-------------------YQPNVTLWN  289 (462)
Q Consensus       232 ---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~~~  289 (462)
                         ||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|++++.+|.                   ..||..+||
T Consensus       644 Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN  723 (1060)
T PLN03218        644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN  723 (1060)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence               9999999999999999999999999999999999999999999999943                   689999999


Q ss_pred             HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC----CCCccchHHHHHH
Q 036356          290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL----DKDVVMRSAMTVG  365 (462)
Q Consensus       290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~  365 (462)
                      .||.+|++.|++++|.++|++     |...|+.||..||++++.+|++.|+++.|.++|+.|.    .||..+|++|+..
T Consensus       724 ~LI~gy~k~G~~eeAlelf~e-----M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl  798 (1060)
T PLN03218        724 ALITALCEGNQLPKALEVLSE-----MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL  798 (1060)
T ss_pred             HHHHHHHHCCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            999999999999999999999     7789999999999999999999999999999999997    4899999999866


Q ss_pred             HHh----c-------------------CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC---CC
Q 036356          366 YGL----H-------------------GLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM---PI  419 (462)
Q Consensus       366 ~~~----~-------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~  419 (462)
                      |.+    .                   +..+.|..+|++|.+.|+.||..||+.++.++++.+..+.+..++++|   +.
T Consensus       799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~  878 (1060)
T PLN03218        799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD  878 (1060)
T ss_pred             HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCC
Confidence            432    1                   224679999999999999999999999999888999999999999998   56


Q ss_pred             CCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcCCCCCCC
Q 036356          420 ELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTDKR  459 (462)
Q Consensus       420 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~pd~~  459 (462)
                      .|+..+|++|+.++.+.  .++|+..+.+|...|+.|+-.
T Consensus       879 ~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        879 SQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             CcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence            67899999999998543  368999999999999999874

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.2e-57  Score=456.08  Aligned_cols=407  Identities=19%  Similarity=0.220  Sum_probs=366.1

Q ss_pred             CCCCCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh----
Q 036356            6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL----   78 (462)
Q Consensus         6 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m----   78 (462)
                      ..++..+|+.+|.++++.|++++|.++|+.|.+.+..         .||..+|+.+   +++.++++.|..++..|    
T Consensus        83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~---------~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g  153 (697)
T PLN03081         83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPF---------TLPASTYDALVEACIALKSIRCVKAVYWHVESSG  153 (697)
T ss_pred             CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence            3445668999999999999999999999999876532         3799999999   99999999999999999    


Q ss_pred             cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 036356           79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP  158 (462)
Q Consensus        79 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  158 (462)
                      ..||..+|+.++.+|++.|+++.|.++|++|.                    .||..+||++|.+|++.|++++|+++|+
T Consensus       154 ~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~--------------------~~~~~t~n~li~~~~~~g~~~~A~~lf~  213 (697)
T PLN03081        154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP--------------------ERNLASWGTIIGGLVDAGNYREAFALFR  213 (697)
T ss_pred             CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC--------------------CCCeeeHHHHHHHHHHCcCHHHHHHHHH
Confidence            78999999999999999999999999999994                    5899999999999999999999999999


Q ss_pred             HhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC----CCCcchHHHHHHHHHhCc--hHHHHHHHhhhcC
Q 036356          159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL----DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSN  232 (462)
Q Consensus       159 ~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~~  232 (462)
                      +|     .+.|+.||..+|+.++.+|++.|+.+.+.+++..+.    .+|..+||.+|.+|++.|  ++|.++|++|..+
T Consensus       214 ~M-----~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~  288 (697)
T PLN03081        214 EM-----WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK  288 (697)
T ss_pred             HH-----HHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence            99     889999999999999999999999999999987765    479999999999999999  9999999999999


Q ss_pred             CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhc-------------------CCCCHhHHHHHHH
Q 036356          233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR-------------------YQPNVTLWNAMIS  293 (462)
Q Consensus       233 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~~~~li~  293 (462)
                      |..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|.                   ..||..+|+++|+
T Consensus       289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~  368 (697)
T PLN03081        289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD  368 (697)
T ss_pred             ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence            999999999999999999999999999999999999999998888744                   6888888999999


Q ss_pred             HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC----CCCccchHHHHHHHHhc
Q 036356          294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL----DKDVVMRSAMTVGYGLH  369 (462)
Q Consensus       294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~  369 (462)
                      +|++.|++++|.++|++     |.    .||..+||+||.+|++.|+.++|.++|++|.    .||..||++++.+|++.
T Consensus       369 ~y~k~G~~~~A~~vf~~-----m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~  439 (697)
T PLN03081        369 LYSKWGRMEDARNVFDR-----MP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS  439 (697)
T ss_pred             HHHHCCCHHHHHHHHHh-----CC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence            99999999999999888     32    4788889999999999999999999998886    48888999999999999


Q ss_pred             CChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356          370 GLGEEGWVLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIR  448 (462)
Q Consensus       370 ~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  448 (462)
                      |++++|.++|+.|.+. |+.|+..+|++++++|++.|++++|.+++++|+..|+..+|++|+.+|+..|+.+.|...+.+
T Consensus       440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~  519 (697)
T PLN03081        440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK  519 (697)
T ss_pred             CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            9999999999998764 888998999999999999999999999999988889999999999999999998888877666


Q ss_pred             hhhcCCCCC
Q 036356          449 GIDEGEKTD  457 (462)
Q Consensus       449 ~~~~~~~pd  457 (462)
                      +.  +..|+
T Consensus       520 l~--~~~p~  526 (697)
T PLN03081        520 LY--GMGPE  526 (697)
T ss_pred             Hh--CCCCC
Confidence            54  44454

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.93  E-value=2.1e-23  Score=219.39  Aligned_cols=356  Identities=13%  Similarity=0.062  Sum_probs=225.1

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +...|++++|.+.|+.+   .+.+..++..+...+.+.|+.++|..+++++.+.+.                 .+...+.
T Consensus       509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~  571 (899)
T TIGR02917       509 DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-----------------QEIEPAL  571 (899)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----------------cchhHHH
Confidence            44455555555555555   223344455555555555555555555555544433                 3445566


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHHHHHHHH
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMIVGY  215 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~  215 (462)
                      .+...+.+.|++++|..+++.+     . ...+.+..+|..+..+|.+.|++++|...|+++.+   .+...+..+...+
T Consensus       572 ~l~~~~~~~~~~~~A~~~~~~~-----~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  645 (899)
T TIGR02917       572 ALAQYYLGKGQLKKALAILNEA-----A-DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY  645 (899)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH-----H-HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            6666677777777777777665     2 23344556666677777777777777777766542   2344556666666


Q ss_pred             HhCc--hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHh---hc-------
Q 036356          216 GLHE--WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CR-------  280 (462)
Q Consensus       216 ~~~~--~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~-------  280 (462)
                      ...|  ++|...|+++..  | +..++..+...+...|++++|.++++.+.+.+. .+...+..+...   .|       
T Consensus       646 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~  724 (899)
T TIGR02917       646 AVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQ  724 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHH
Confidence            6666  677777776666  3 355666666666677777777777776666542 222222222222   11       


Q ss_pred             -------CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC
Q 036356          281 -------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD  353 (462)
Q Consensus       281 -------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  353 (462)
                             ..|+..++..+...+.+.|+.++|.+.+.+.+     .. .+.+...++.+...|.+.|+.++|...|+++.+
T Consensus       725 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-----~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  798 (899)
T TIGR02917       725 AYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWL-----KT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK  798 (899)
T ss_pred             HHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH-----Hh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence                   34555666677777777777777777777743     22 234566777777778888888888888877652


Q ss_pred             ---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 036356          354 ---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRR  427 (462)
Q Consensus       354 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~  427 (462)
                         ++..+++.+...+...|+ .+|...+++..+  ..|+ ..++..+...+...|++++|.+.++++ ...| +..++.
T Consensus       799 ~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  875 (899)
T TIGR02917       799 KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY  875 (899)
T ss_pred             hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence               355667777777777777 778888887776  4454 456667777788888888888888887 3333 677788


Q ss_pred             HHHHHHHccCChHHHHHHHHhhh
Q 036356          428 ALLSAWKIPMQQWENMLQTIRGI  450 (462)
Q Consensus       428 ~l~~~~~~~~~~~~a~~~~~~~~  450 (462)
                      .+..++...|+.++|...+.+|+
T Consensus       876 ~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       876 HLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHh
Confidence            88888888888888887777664

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.92  E-value=2.8e-22  Score=210.88  Aligned_cols=415  Identities=12%  Similarity=-0.014  Sum_probs=237.9

Q ss_pred             CChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh---cCCCcc
Q 036356           11 CTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL---LSNEEN   84 (462)
Q Consensus        11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m---~~~~~~   84 (462)
                      ..+..+...+...|+++.|...++.+.+.....           ...+..+   +.+.|++++|+.+++.+   .+.+..
T Consensus       398 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  466 (899)
T TIGR02917       398 AARTQLGISKLSQGDPSEAIADLETAAQLDPEL-----------GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNAS  466 (899)
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc-----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcH
Confidence            345556666667777777777777776554211           1111111   44555555555555555   333344


Q ss_pred             hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH---HHHHhhhcC---------------CCCCeeeHHHHHHHHHh
Q 036356           85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR---------------YQPNVTLRNAMISGYAK  146 (462)
Q Consensus        85 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---l~~~~~~~~---------------~~p~~~~~~~li~~~~~  146 (462)
                      ++..+..++...|++++|.+.|+++.+.... .+..   +...+.+.|               .+.+..++..+...+.+
T Consensus       467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  545 (899)
T TIGR02917       467 LHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR  545 (899)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            5555555555555555555555555443320 0000   111111111               11455666677777777


Q ss_pred             CCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHHHHHHHHHhCc--hH
Q 036356          147 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMIVGYGLHE--WS  221 (462)
Q Consensus       147 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~--~~  221 (462)
                      .|+.++|..+|+++     ... .+.+...+..+...|.+.|++++|..+++++.+   .+...|..+..++...|  ++
T Consensus       546 ~~~~~~A~~~~~~~-----~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  619 (899)
T TIGR02917       546 TGNEEEAVAWLEKA-----AEL-NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK  619 (899)
T ss_pred             cCCHHHHHHHHHHH-----HHh-CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence            77777777777775     222 233455666677777777777777777776652   34556777777777777  77


Q ss_pred             HHHHHHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHh---hc---------------
Q 036356          222 AFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CR---------------  280 (462)
Q Consensus       222 a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~---------------  280 (462)
                      |...|+++..   .+...+..+..++.+.|++++|..+++.+.+.. +.+..++..+...   .|               
T Consensus       620 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  698 (899)
T TIGR02917       620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ  698 (899)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            7777777766   344556667777777778888888777776643 1222333333222   11               


Q ss_pred             CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCcc
Q 036356          281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVV  357 (462)
Q Consensus       281 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~  357 (462)
                      .+.+...+..+...+.+.|++++|...|.+.+     .  ..|+..++..+..++.+.|++++|...++.+.+   .+..
T Consensus       699 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~  771 (899)
T TIGR02917       699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKAL-----K--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV  771 (899)
T ss_pred             CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH-----h--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            22344455555555666666666666665522     2  223334555566666666666666666665542   3444


Q ss_pred             chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHc
Q 036356          358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKI  435 (462)
Q Consensus       358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~  435 (462)
                      .+..+...|...|++++|.+.|+++.+.. +++...++.+...+...|+ .+|+..+++. ...| +..++..+...+..
T Consensus       772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  849 (899)
T TIGR02917       772 LRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE  849 (899)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            55666666666677777777776666632 2235566666666666666 6666666665 3223 34456667777777


Q ss_pred             cCChHHHHHHHHhhhhcC
Q 036356          436 PMQQWENMLQTIRGIDEG  453 (462)
Q Consensus       436 ~~~~~~a~~~~~~~~~~~  453 (462)
                      .|++++|+..+.++++.+
T Consensus       850 ~g~~~~A~~~~~~a~~~~  867 (899)
T TIGR02917       850 KGEADRALPLLRKAVNIA  867 (899)
T ss_pred             cCCHHHHHHHHHHHHhhC
Confidence            777777777777776654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.88  E-value=3.4e-20  Score=175.74  Aligned_cols=300  Identities=16%  Similarity=0.085  Sum_probs=217.2

Q ss_pred             hhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCC
Q 036356           92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR  171 (462)
Q Consensus        92 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  171 (462)
                      .+...|+++.|...|+++.+.++                 .+..++..+...+...|++++|..+++.+     ...+..
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~-----l~~~~~  101 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVDP-----------------ETVELHLALGNLFRRRGEVDRAIRIHQNL-----LSRPDL  101 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcCc-----------------ccHHHHHHHHHHHHHcCcHHHHHHHHHHH-----hcCCCC
Confidence            34456777777777777777643                 44556777777777777777777777776     332211


Q ss_pred             CC---chHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCcc
Q 036356          172 NN---VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLE  248 (462)
Q Consensus       172 ~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~  248 (462)
                      ++   ..++..+...|.+.|++++|..+|+++.+.+.                          .+..++..+...+.+.|
T Consensus       102 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~--------------------------~~~~~~~~la~~~~~~g  155 (389)
T PRK11788        102 TREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD--------------------------FAEGALQQLLEIYQQEK  155 (389)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc--------------------------chHHHHHHHHHHHHHhc
Confidence            11   23556667777777777777777776654322                          23345666777777888


Q ss_pred             chhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHH
Q 036356          249 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN  328 (462)
Q Consensus       249 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~  328 (462)
                      ++++|.+.++.+.+.+..++.            ......+..+...+.+.|++++|...|++.+     +.. +.+...+
T Consensus       156 ~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-----~~~-p~~~~~~  217 (389)
T PRK11788        156 DWQKAIDVAERLEKLGGDSLR------------VEIAHFYCELAQQALARGDLDAARALLKKAL-----AAD-PQCVRAS  217 (389)
T ss_pred             hHHHHHHHHHHHHHhcCCcch------------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----hHC-cCCHHHH
Confidence            888888888888776532100            0012235567777888999999999998843     222 2235577


Q ss_pred             HHHHHHHHhcCCcchHHHHhccCCC--CC--ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 036356          329 TVLIDMYAKCGSVDLAPMFFDRTLD--KD--VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA  404 (462)
Q Consensus       329 ~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  404 (462)
                      ..+...|.+.|++++|.++|+++.+  |+  ..+++.++.+|...|++++|...++++.+  ..|+...+..+...+.+.
T Consensus       218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~la~~~~~~  295 (389)
T PRK11788        218 ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE--EYPGADLLLALAQLLEEQ  295 (389)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHh
Confidence            7788889999999999999998873  33  34578888999999999999999999988  568877778899999999


Q ss_pred             CChHHHHHHHHhC-CCCCCHHHHHHHHHHHHc---cCChHHHHHHHHhhhhcCCCCCCC
Q 036356          405 GYSNHAFKFIMNM-PIELRLSVRRALLSAWKI---PMQQWENMLQTIRGIDEGEKTDKR  459 (462)
Q Consensus       405 g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~pd~~  459 (462)
                      |++++|.++++++ ...|+..+++.++..++.   .|+..+++..+.+++++++.|++.
T Consensus       296 g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        296 EGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             CCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            9999999999887 667999999988888775   457889998999999988888764

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.85  E-value=1.5e-19  Score=171.30  Aligned_cols=289  Identities=12%  Similarity=0.030  Sum_probs=216.3

Q ss_pred             hccCCChhhHHHHHHhh--cCC-CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC---ee
Q 036356           62 HLWSRTEWSAFGSFDGL--LSN-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN---VT  135 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~---~~  135 (462)
                      +...|++++|+..|+++  ..| +..++..+...+.+.|++++|..+++.+.+.+.                .++   ..
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----------------~~~~~~~~  108 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD----------------LTREQRLL  108 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC----------------CCHHHHHH
Confidence            77889999999999999  444 456889999999999999999999999987543                221   25


Q ss_pred             eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHH
Q 036356          136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY  215 (462)
Q Consensus       136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~  215 (462)
                      .+..+...|.+.|++++|..+|+++     .+. .+++..+++.++..+.+.|++++|.+.++++.+.+.......+   
T Consensus       109 ~~~~La~~~~~~g~~~~A~~~~~~~-----l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---  179 (389)
T PRK11788        109 ALQELGQDYLKAGLLDRAEELFLQL-----VDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI---  179 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHH-----HcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH---
Confidence            6788899999999999999999997     332 3456788999999999999999999999988653222111000   


Q ss_pred             HhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 036356          216 GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY  295 (462)
Q Consensus       216 ~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~  295 (462)
                                        ...+..+...+.+.|++++|...++++.+..                 +.+...+..+...+
T Consensus       180 ------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~~~  224 (389)
T PRK11788        180 ------------------AHFYCELAQQALARGDLDAARALLKKALAAD-----------------PQCVRASILLGDLA  224 (389)
T ss_pred             ------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-----------------cCCHHHHHHHHHHH
Confidence                              1123445566677788888888888877653                 13455677777788


Q ss_pred             HcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC--CCCccchHHHHHHHHhcCChH
Q 036356          296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMTVGYGLHGLGE  373 (462)
Q Consensus       296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~  373 (462)
                      .+.|++++|.++|.++     ...+......+++.++.+|.+.|++++|...++++.  .|+...+..++..+.+.|+++
T Consensus       225 ~~~g~~~~A~~~~~~~-----~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~  299 (389)
T PRK11788        225 LAQGDYAAAIEALERV-----EEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPE  299 (389)
T ss_pred             HHCCCHHHHHHHHHHH-----HHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHH
Confidence            8888888888888873     232222224567778888888888888888888765  366666677788888888888


Q ss_pred             HHHHHHHHHHHCCCCCCHhHHHHHHHHHHh---cCChHHHHHHHHhC
Q 036356          374 EGWVLFHHIRKHGIEPRHQHYARVVDLLAR---AGYSNHAFKFIMNM  417 (462)
Q Consensus       374 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m  417 (462)
                      +|..+++++.+  ..|+..+++.++..+..   .|+.+++..++++|
T Consensus       300 ~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~  344 (389)
T PRK11788        300 AAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL  344 (389)
T ss_pred             HHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence            88888888877  56888888877777664   45788888888877

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.78  E-value=4e-17  Score=149.43  Aligned_cols=353  Identities=14%  Similarity=0.058  Sum_probs=273.1

Q ss_pred             CChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCCCcch
Q 036356           11 CTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSNEENE   85 (462)
Q Consensus        11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~~~~~   85 (462)
                      .+|+.+-+.+...|++.+|..+++.+++...           ..+..|-.+   +...|+.+.|...|.+.  ..|+...
T Consensus       117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p-----------~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c  185 (966)
T KOG4626|consen  117 EAYSNLANILKERGQLQDALALYRAAIELKP-----------KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC  185 (966)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-----------hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh
Confidence            4577788888888888888888888887763           244455444   88888888888888777  5555444


Q ss_pred             HHHHHH-hhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhh
Q 036356           86 YGTALD-CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYY  164 (462)
Q Consensus        86 ~~~ll~-~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  164 (462)
                      ..+-+. .+...|++.+|...|.+..+..+                 -=...|+.|...+...|++..|++-|++-    
T Consensus       186 a~s~lgnLlka~Grl~ea~~cYlkAi~~qp-----------------~fAiawsnLg~~f~~~Gei~~aiq~y~eA----  244 (966)
T KOG4626|consen  186 ARSDLGNLLKAEGRLEEAKACYLKAIETQP-----------------CFAIAWSNLGCVFNAQGEIWLAIQHYEEA----  244 (966)
T ss_pred             hhcchhHHHHhhcccchhHHHHHHHHhhCC-----------------ceeeeehhcchHHhhcchHHHHHHHHHHh----
Confidence            333333 33446778888888887776643                 33577999999999999999999999884    


Q ss_pred             hhhcCCCCC-chHHHHHHHHHHhcCCcccHHHHhhccC--CC-CcchHHHHHHHHHhCc--hHHHHHHHhhhc--CC-cc
Q 036356          165 IGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMIVGYGLHE--WSAFGSFDGLLS--NE-EN  235 (462)
Q Consensus       165 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~--~~a~~~~~~m~~--~~-~~  235 (462)
                         -.+.|+ ...|-.|-+.|...+.++.|...+.+..  .| ....+..+...|-..|  +-|+..|++...  |+ ..
T Consensus       245 ---vkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~  321 (966)
T KOG4626|consen  245 ---VKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD  321 (966)
T ss_pred             ---hcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH
Confidence               345555 4577788999999999999999888754  23 3445555556677777  889999998888  54 56


Q ss_pred             hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHH
Q 036356          236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY  315 (462)
Q Consensus       236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  315 (462)
                      .|+.|..++...|++.+|.+.|...+....                 ....+.+.|...|...|.+++|..+|...+   
T Consensus       322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-----------------~hadam~NLgni~~E~~~~e~A~~ly~~al---  381 (966)
T KOG4626|consen  322 AYNNLANALKDKGSVTEAVDCYNKALRLCP-----------------NHADAMNNLGNIYREQGKIEEATRLYLKAL---  381 (966)
T ss_pred             HHhHHHHHHHhccchHHHHHHHHHHHHhCC-----------------ccHHHHHHHHHHHHHhccchHHHHHHHHHH---
Confidence            899999999999999999999998887542                 346678889999999999999999998743   


Q ss_pred             HHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--CC-ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 036356          316 IGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD-VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-  390 (462)
Q Consensus       316 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-  390 (462)
                          .+.|. ...++.|...|...|++++|...+++..+  |+ ...|+.+...|-..|+.+.|.+.+.+.+.  +.|. 
T Consensus       382 ----~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~  455 (966)
T KOG4626|consen  382 ----EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTF  455 (966)
T ss_pred             ----hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHH
Confidence                35555 56678888899999999999999988763  44 34788888899999999999999999888  8888 


Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036356          391 HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS  424 (462)
Q Consensus       391 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~  424 (462)
                      ...++-|...|-.+|+..+|+.-+++. .++||..
T Consensus       456 AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp  490 (966)
T KOG4626|consen  456 AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP  490 (966)
T ss_pred             HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence            678888999999999999999999887 7777643

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.78  E-value=5.4e-16  Score=164.99  Aligned_cols=379  Identities=10%  Similarity=-0.073  Sum_probs=251.1

Q ss_pred             hhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCCCcc---hHH---
Q 036356           19 ACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSNEEN---EYG---   87 (462)
Q Consensus        19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~~~~---~~~---   87 (462)
                      .+...|++++|...+++.++...           .+...+..+   +.+.|++++|+..|++.  ..|+..   .|.   
T Consensus       278 ~~~~~g~~~~A~~~l~~aL~~~P-----------~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll  346 (1157)
T PRK11447        278 AAVDSGQGGKAIPELQQAVRANP-----------KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL  346 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence            44567788888888888877652           244445555   78888999999888888  344321   121   


Q ss_pred             ---------HHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 036356           88 ---------TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP  158 (462)
Q Consensus        88 ---------~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  158 (462)
                               .....+.+.|++++|...|+++.+..+                 .+...+..+...+...|++++|++.|+
T Consensus       347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-----------------~~~~a~~~Lg~~~~~~g~~~eA~~~y~  409 (1157)
T PRK11447        347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-----------------TDSYAVLGLGDVAMARKDYAAAERYYQ  409 (1157)
T ss_pred             HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                     123456678888999999988888754                 456677788899999999999999999


Q ss_pred             HhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCC------------cchHHHHHHHHHhCc--hHHHH
Q 036356          159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD------------VVMRSAMIVGYGLHE--WSAFG  224 (462)
Q Consensus       159 ~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------------~~~~~~li~~~~~~~--~~a~~  224 (462)
                      +.     .+. .+.+...+..+...|. .++.++|..+++.+....            ...+..+...+...|  ++|..
T Consensus       410 ~a-----L~~-~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~  482 (1157)
T PRK11447        410 QA-----LRM-DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAE  482 (1157)
T ss_pred             HH-----HHh-CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHH
Confidence            96     322 2334556666777764 467899999988765321            112334455566667  99999


Q ss_pred             HHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCCh
Q 036356          225 SFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYA  301 (462)
Q Consensus       225 ~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~  301 (462)
                      .|++..+  |+ ...+..+...+.+.|++++|...++.+.+....                 +...+..+...+...++.
T Consensus       483 ~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-----------------~~~~~~a~al~l~~~~~~  545 (1157)
T PRK11447        483 LQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-----------------DPEQVYAYGLYLSGSDRD  545 (1157)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------CHHHHHHHHHHHHhCCCH
Confidence            9999988  54 456677888899999999999999998875321                 222222222233334444


Q ss_pred             hHHHHHhhHHHHH------------------------------------HHHhhCCCCchhHHHHHHHHHHhcCCcchHH
Q 036356          302 EEAVKLFPKWMDY------------------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP  345 (462)
Q Consensus       302 ~~a~~~~~~~~~~------------------------------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  345 (462)
                      ++|+..+......                                    .+.  ..+.+...+..+...+.+.|+.++|.
T Consensus       546 ~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~--~~p~~~~~~~~La~~~~~~g~~~~A~  623 (1157)
T PRK11447        546 RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR--QQPPSTRIDLTLADWAQQRGDYAAAR  623 (1157)
T ss_pred             HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH--hCCCCchHHHHHHHHHHHcCCHHHHH
Confidence            4444443321000                                    000  12234455566777777788888888


Q ss_pred             HHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 036356          346 MFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIE  420 (462)
Q Consensus       346 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~  420 (462)
                      ..|++..+  | +...+..+...|...|++++|.+.++...+  ..|+ ...+..+..++...|++++|.++++.+ ...
T Consensus       624 ~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        624 AAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence            88877653  3 456677777788888888888888887665  4554 445566677777788888888888876 222


Q ss_pred             C-------CHHHHHHHHHHHHccCChHHHHHHHHhhhhcC
Q 036356          421 L-------RLSVRRALLSAWKIPMQQWENMLQTIRGIDEG  453 (462)
Q Consensus       421 p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  453 (462)
                      |       +...+..+...+...|+.++|+..+.+.+..-
T Consensus       702 ~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~  741 (1157)
T PRK11447        702 KSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS  741 (1157)
T ss_pred             ccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence            1       22455666777778888888887777776544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.78  E-value=4.2e-16  Score=155.38  Aligned_cols=311  Identities=11%  Similarity=0.034  Sum_probs=242.8

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +.+.|++.+|+.+++..   .+-+...+..++.++...|+++.|...++++.+..+                 .+...+.
T Consensus        52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-----------------~~~~a~~  114 (656)
T PRK15174         52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-----------------CQPEDVL  114 (656)
T ss_pred             HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-----------------CChHHHH
Confidence            88899999999999988   444566777777888889999999999999998865                 5667788


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC--CCCc-chHHHHHHHH
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDV-VMRSAMIVGY  215 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~-~~~~~li~~~  215 (462)
                      .+...+...|++++|...|++.     ... -+.+...+..+...+...|++++|...++.+.  .|+. ..+..+ ..+
T Consensus       115 ~la~~l~~~g~~~~Ai~~l~~A-----l~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l  187 (656)
T PRK15174        115 LVASVLLKSKQYATVADLAEQA-----WLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSF  187 (656)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH-----HHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHH
Confidence            8889999999999999999996     222 23346778889999999999999999998764  2333 233333 335


Q ss_pred             HhCc--hHHHHHHHhhhc----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHH
Q 036356          216 GLHE--WSAFGSFDGLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN  289 (462)
Q Consensus       216 ~~~~--~~a~~~~~~m~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  289 (462)
                      ...|  ++|...++++..    ++......+..++.+.|++++|...++.+.+..                 +.+...+.
T Consensus       188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-----------------p~~~~~~~  250 (656)
T PRK15174        188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-----------------LDGAALRR  250 (656)
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------------CCCHHHHH
Confidence            5566  899999998777    233344555677889999999999999998764                 24667788


Q ss_pred             HHHHHHHcCCChhH----HHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHH
Q 036356          290 AMISGYAKNGYAEE----AVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSA  361 (462)
Q Consensus       290 ~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~  361 (462)
                      .+...+...|+.++    |...|++.+     .  ..| +...+..+...+.+.|++++|...+++..+  | +...+..
T Consensus       251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al-----~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~  323 (656)
T PRK15174        251 SLGLAYYQSGRSREAKLQAAEHWRHAL-----Q--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAM  323 (656)
T ss_pred             HHHHHHHHcCCchhhHHHHHHHHHHHH-----h--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            88889999999886    788888843     2  234 467888889999999999999999998763  4 3456777


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhH-HHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036356          362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH-YARVVDLLARAGYSNHAFKFIMNM-PIELR  422 (462)
Q Consensus       362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m-~~~p~  422 (462)
                      +...+.+.|++++|...++.+..  ..|+... +..+..++...|++++|...+++. ...|+
T Consensus       324 La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        324 YARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence            88899999999999999999988  5676433 444567888999999999999987 44444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.77  E-value=1.1e-15  Score=152.35  Aligned_cols=344  Identities=9%  Similarity=-0.060  Sum_probs=264.2

Q ss_pred             hccCCChhhHHHHHHhh------cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee
Q 036356           62 HLWSRTEWSAFGSFDGL------LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT  135 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~  135 (462)
                      +.++.+|+.---.|...      .--+..-...++..+.+.|+++.|..+++......+                 -+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-----------------~~~~   77 (656)
T PRK15174         15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAK-----------------NGRD   77 (656)
T ss_pred             hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-----------------Cchh
Confidence            44555555554455444      122344566678888999999999999999998865                 3344


Q ss_pred             eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--C-CcchHHHHH
Q 036356          136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMI  212 (462)
Q Consensus       136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li  212 (462)
                      .+..++.+....|++++|...|+++     .. --+.+...+..+...+...|++++|...+++...  | +...+..+.
T Consensus        78 ~l~~l~~~~l~~g~~~~A~~~l~~~-----l~-~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la  151 (656)
T PRK15174         78 LLRRWVISPLASSQPDAVLQVVNKL-----LA-VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHL  151 (656)
T ss_pred             HHHHHhhhHhhcCCHHHHHHHHHHH-----HH-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            5555667777899999999999997     22 2233466788889999999999999999998764  3 456778888


Q ss_pred             HHHHhCc--hHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHH
Q 036356          213 VGYGLHE--WSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW  288 (462)
Q Consensus       213 ~~~~~~~--~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  288 (462)
                      ..+...|  ++|...++.+..  |+.......+..+.+.|++++|...++.+.+....                ++...+
T Consensus       152 ~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~----------------~~~~~~  215 (656)
T PRK15174        152 RTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFAL----------------ERQESA  215 (656)
T ss_pred             HHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------------cchhHH
Confidence            8898888  899999998866  55443333344578899999999999998775421                334444


Q ss_pred             HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcch----HHHHhccCCC--C-CccchHH
Q 036356          289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL----APMFFDRTLD--K-DVVMRSA  361 (462)
Q Consensus       289 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~--~-~~~~~~~  361 (462)
                      ..+..++.+.|+.++|+..+.+.+     ... +.+...+..+...|...|++++    |...|++..+  | +...+..
T Consensus       216 ~~l~~~l~~~g~~~eA~~~~~~al-----~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~  289 (656)
T PRK15174        216 GLAVDTLCAVGKYQEAIQTGESAL-----ARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTL  289 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH-----hcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            556678899999999999999953     222 2346778889999999999986    7899988763  4 4567889


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHccCC
Q 036356          362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVR-RALLSAWKIPMQ  438 (462)
Q Consensus       362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~l~~~~~~~~~  438 (462)
                      +...+...|++++|...+++...  ..|+ ...+..+..++.+.|++++|...++.+ ...|+...+ ..+..++...|+
T Consensus       290 lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~  367 (656)
T PRK15174        290 YADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK  367 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC
Confidence            99999999999999999999998  6677 567778889999999999999999998 556765443 345678899999


Q ss_pred             hHHHHHHHHhhhhc
Q 036356          439 QWENMLQTIRGIDE  452 (462)
Q Consensus       439 ~~~a~~~~~~~~~~  452 (462)
                      .++|+..+.+.+..
T Consensus       368 ~deA~~~l~~al~~  381 (656)
T PRK15174        368 TSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999888776543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.76  E-value=1.7e-15  Score=151.40  Aligned_cols=343  Identities=12%  Similarity=-0.003  Sum_probs=257.5

Q ss_pred             hccCCChhhHHHHHHhh--cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHH
Q 036356           62 HLWSRTEWSAFGSFDGL--LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNA  139 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~  139 (462)
                      +.+.|++++|+..|++.  ..|+...|..+..++.+.|++++|...++...+..+                 .+...|..
T Consensus       137 ~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-----------------~~~~a~~~  199 (615)
T TIGR00990       137 AYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-----------------DYSKALNR  199 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-----------------CCHHHHHH
Confidence            88889999999999998  778888899999999999999999999999998765                 56678888


Q ss_pred             HHHHHHhCCChhHHHHHHHHhhhhhhhhc---------------------------CCCC-CchHHHHH-----------
Q 036356          140 MISGYAKNGYAEEAVKLFPKWMDYYIGKS---------------------------EYRN-NVIVNTVL-----------  180 (462)
Q Consensus       140 li~~~~~~g~~~~a~~~~~~m~~~~~~~~---------------------------~~~~-~~~~~~~l-----------  180 (462)
                      +..+|...|++++|+.-|....    ...                           ...| +...+..+           
T Consensus       200 ~a~a~~~lg~~~eA~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  275 (615)
T TIGR00990       200 RANAYDGLGKYADALLDLTASC----IIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKP  275 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH----HhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCc
Confidence            9999999999999987664431    000                           0001 10010000           


Q ss_pred             -------------------HHHH------HhcCCcccHHHHhhccCCC------CcchHHHHHHHHHhCc--hHHHHHHH
Q 036356          181 -------------------IDMY------AKCGSVDLAPMFFDRTLDK------DVVMRSAMIVGYGLHE--WSAFGSFD  227 (462)
Q Consensus       181 -------------------i~~~------~~~g~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~--~~a~~~~~  227 (462)
                                         +..+      ...+++++|.+.|++..+.      ....|+.+...+...|  ++|+..|+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~  355 (615)
T TIGR00990       276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS  355 (615)
T ss_pred             chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                               0000      1125677788888766532      2344666666666677  89999999


Q ss_pred             hhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHH
Q 036356          228 GLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEA  304 (462)
Q Consensus       228 ~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a  304 (462)
                      +...  |+ ...|..+...+...|++++|...++...+..                 +.+...|..+...+...|++++|
T Consensus       356 kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----------------p~~~~~~~~lg~~~~~~g~~~~A  418 (615)
T TIGR00990       356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-----------------SEDPDIYYHRAQLHFIKGEFAQA  418 (615)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHH
Confidence            8887  55 4467777888888999999999999887763                 24577888899999999999999


Q ss_pred             HHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHH
Q 036356          305 VKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFH  380 (462)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~  380 (462)
                      ...|++.+     .  ..| +...+..+..++.+.|++++|...|++..+  | +...|+.+...+...|++++|.+.|+
T Consensus       419 ~~~~~kal-----~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~  491 (615)
T TIGR00990       419 GKDYQKSI-----D--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD  491 (615)
T ss_pred             HHHHHHHH-----H--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence            99999843     2  234 466777788899999999999999998763  3 56678889999999999999999999


Q ss_pred             HHHHCCCCCCH-h-------HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356          381 HIRKHGIEPRH-Q-------HYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLSAWKIPMQQWENMLQTIRGI  450 (462)
Q Consensus       381 ~m~~~g~~p~~-~-------~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~  450 (462)
                      +...  +.|+. .       .++.....+...|++++|.+++++. .+.|+ ...+..+...+...|++++|+..+.+..
T Consensus       492 ~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~  569 (615)
T TIGR00990       492 TAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA  569 (615)
T ss_pred             HHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            9888  44431 1       1222223344469999999999986 55564 4478899999999999999998887764


Q ss_pred             h
Q 036356          451 D  451 (462)
Q Consensus       451 ~  451 (462)
                      .
T Consensus       570 ~  570 (615)
T TIGR00990       570 E  570 (615)
T ss_pred             H
Confidence            3

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.75  E-value=1.3e-15  Score=162.12  Aligned_cols=371  Identities=9%  Similarity=-0.031  Sum_probs=268.5

Q ss_pred             CCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceee----------hhh-----hccCCChhhHHH
Q 036356            9 NGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFL----------DLY-----HLWSRTEWSAFG   73 (462)
Q Consensus         9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-----~~~~~~~~~A~~   73 (462)
                      +...+..+-..+.+.|++++|...|++..+.....         ++...|          ..+     +.+.|++++|+.
T Consensus       302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~---------~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~  372 (1157)
T PRK11447        302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHS---------SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER  372 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            45667788888999999999999999998765321         111111          111     678999999999


Q ss_pred             HHHhh--c-CCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCCh
Q 036356           74 SFDGL--L-SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYA  150 (462)
Q Consensus        74 ~~~~m--~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~  150 (462)
                      .|++.  . +.+...+..+..++...|++++|.+.|++..+...                 .+...+..+...+. .++.
T Consensus       373 ~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-----------------~~~~a~~~L~~l~~-~~~~  434 (1157)
T PRK11447        373 LYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-----------------GNTNAVRGLANLYR-QQSP  434 (1157)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHH-hcCH
Confidence            99999  3 44566788888999999999999999999998765                 44556666766664 4678


Q ss_pred             hHHHHHHHHhhhhhhhhcC--------CCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--C-CcchHHHHHHHHHhCc
Q 036356          151 EEAVKLFPKWMDYYIGKSE--------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMIVGYGLHE  219 (462)
Q Consensus       151 ~~a~~~~~~m~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~  219 (462)
                      ++|+.+++.+.     ...        .......+..+...+...|++++|++.|++..+  | +...+..+...|.+.|
T Consensus       435 ~~A~~~l~~l~-----~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G  509 (1157)
T PRK11447        435 EKALAFIASLS-----ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG  509 (1157)
T ss_pred             HHHHHHHHhCC-----HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            99998887751     111        001123455677788889999999999998764  3 3445666777888888


Q ss_pred             --hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHH---------HHHHh---hc--
Q 036356          220 --WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI---------SLTAV---CR--  280 (462)
Q Consensus       220 --~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------~l~~~---~~--  280 (462)
                        ++|...+++...  |+ ...+..+...+...++.++|...++.+......++...+.         .+...   .|  
T Consensus       510 ~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~  589 (1157)
T PRK11447        510 QRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE  589 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence              999999998877  43 3334444445667888999988887754332222211110         00000   11  


Q ss_pred             ---------CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccC
Q 036356          281 ---------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT  351 (462)
Q Consensus       281 ---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  351 (462)
                               .+.+...+..+...+.+.|+.++|+..|++.+     .. -+.+...+..+...|...|+.++|...++..
T Consensus       590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al-----~~-~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l  663 (1157)
T PRK11447        590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVL-----TR-EPGNADARLGLIEVDIAQGDLAAARAQLAKL  663 (1157)
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH-----Hh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                     34456677788889999999999999999843     22 1235778889999999999999999999987


Q ss_pred             CC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCC--CC---CHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          352 LD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI--EP---RHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       352 ~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .+  | +...+..+..++...|++++|.++++++....-  .|   +...+..+...+...|++++|++.++..
T Consensus       664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A  737 (1157)
T PRK11447        664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA  737 (1157)
T ss_pred             hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            64  3 445566788889999999999999999987421  22   2346666788899999999999999987

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.73  E-value=6.1e-16  Score=141.80  Aligned_cols=343  Identities=15%  Similarity=0.118  Sum_probs=257.3

Q ss_pred             hccCCChhhHHHHHHhh--cCC-CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL--LSN-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +-..|++++|+.+++.+  .+| ....|..+..++...|+.+.|.+.|.+..+.+                  |+.....
T Consensus       126 ~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln------------------P~l~ca~  187 (966)
T KOG4626|consen  126 LKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN------------------PDLYCAR  187 (966)
T ss_pred             HHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC------------------cchhhhh
Confidence            66677777777777777  444 35677777777777777777777777777653                  3444333


Q ss_pred             HHH-HHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC-chHHHHHHHHHHhcCCcccHHHHhhccCCCCc---chHHHHHH
Q 036356          139 AMI-SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV---VMRSAMIV  213 (462)
Q Consensus       139 ~li-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~li~  213 (462)
                      +-+ ..+-..|++++|...|.+-       -...|. ...|+.|-..+-.+|+...|+.-|++..+-|+   ..|-.+-.
T Consensus       188 s~lgnLlka~Grl~ea~~cYlkA-------i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGn  260 (966)
T KOG4626|consen  188 SDLGNLLKAEGRLEEAKACYLKA-------IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGN  260 (966)
T ss_pred             cchhHHHHhhcccchhHHHHHHH-------HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHH
Confidence            322 3334467777777777663       123333 45677777777778888888888877664333   34555556


Q ss_pred             HHHhCc--hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCC-HhH
Q 036356          214 GYGLHE--WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN-VTL  287 (462)
Q Consensus       214 ~~~~~~--~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~  287 (462)
                      .|...+  ++|+..|.+...  | ....+..+...|-..|+++.|+..|+..++.                  .|+ ...
T Consensus       261 V~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~------------------~P~F~~A  322 (966)
T KOG4626|consen  261 VYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL------------------QPNFPDA  322 (966)
T ss_pred             HHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc------------------CCCchHH
Confidence            666666  777777776666  4 3566777777788888888888888888774                  354 567


Q ss_pred             HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--CC-ccchHHHH
Q 036356          288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD-VVMRSAMT  363 (462)
Q Consensus       288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li  363 (462)
                      |+.|..++-..|++.+|.+.+.+.+       ...|+ ....+.|...|.+.|.++.|.++|....+  |. ....|.|.
T Consensus       323 y~NlanALkd~G~V~ea~~cYnkaL-------~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa  395 (966)
T KOG4626|consen  323 YNNLANALKDKGSVTEAVDCYNKAL-------RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLA  395 (966)
T ss_pred             HhHHHHHHHhccchHHHHHHHHHHH-------HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHH
Confidence            9999999999999999999998843       23343 56777899999999999999999998775  33 34678899


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHccCChH
Q 036356          364 VGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRL-SVRRALLSAWKIPMQQW  440 (462)
Q Consensus       364 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~  440 (462)
                      ..|-..|++++|+..+++..+  +.|+ ...|+-+...|-..|+.+.|.+.+.+. .+.|.. ...+.|...|..+|+..
T Consensus       396 ~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~  473 (966)
T KOG4626|consen  396 SIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP  473 (966)
T ss_pred             HHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcH
Confidence            999999999999999999998  9999 789999999999999999999999988 777764 47889999999999999


Q ss_pred             HHHHHHHhhhhcCCCCCC
Q 036356          441 ENMLQTIRGIDEGEKTDK  458 (462)
Q Consensus       441 ~a~~~~~~~~~~~~~pd~  458 (462)
                      +|+..+.+.+.  .+||-
T Consensus       474 ~AI~sY~~aLk--lkPDf  489 (966)
T KOG4626|consen  474 EAIQSYRTALK--LKPDF  489 (966)
T ss_pred             HHHHHHHHHHc--cCCCC
Confidence            99988876543  44553

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.73  E-value=1.3e-14  Score=147.78  Aligned_cols=385  Identities=9%  Similarity=-0.073  Sum_probs=282.9

Q ss_pred             CCCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--c-CC
Q 036356            8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--L-SN   81 (462)
Q Consensus         8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~-~~   81 (462)
                      .+.....-.+......|+.++|.++++.......           .+...+..+   +...|++++|+.+|+..  . +.
T Consensus        13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~-----------~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~   81 (765)
T PRK10049         13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ-----------LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ   81 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3444556677788889999999999998876331           233334444   89999999999999998  4 44


Q ss_pred             CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356           82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM  161 (462)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  161 (462)
                      +...+..+..++...|++++|...+++..+..+                 .+.. +..+..++...|+.++|+..+++. 
T Consensus        82 ~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-----------------~~~~-~~~la~~l~~~g~~~~Al~~l~~a-  142 (765)
T PRK10049         82 NDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-----------------DKAN-LLALAYVYKRAGRHWDELRAMTQA-  142 (765)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CCHH-HHHHHHHHHHCCCHHHHHHHHHHH-
Confidence            566778888889999999999999999998854                 4555 888899999999999999999996 


Q ss_pred             hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC-CCc------chHHHHHHHHHhC--------c--hHHHH
Q 036356          162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDV------VMRSAMIVGYGLH--------E--WSAFG  224 (462)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~------~~~~~li~~~~~~--------~--~~a~~  224 (462)
                          ... .+.+...+..+..++...|..+.|.+.++.... |+.      ......+......        .  ++|+.
T Consensus       143 ----l~~-~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~  217 (765)
T PRK10049        143 ----LPR-APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA  217 (765)
T ss_pred             ----HHh-CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence                222 233455666788888889999999999987775 221      0112222222111        1  45777


Q ss_pred             HHHhhhc-----CCcch-HH----HHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCC-HhHHHHHHH
Q 036356          225 SFDGLLS-----NEENE-YG----TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN-VTLWNAMIS  293 (462)
Q Consensus       225 ~~~~m~~-----~~~~~-~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~li~  293 (462)
                      .++.+.+     |+... +.    ..+.++...|++++|+..|+.+.+.+-.               .|+ ...+  +..
T Consensus       218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~---------------~P~~a~~~--la~  280 (765)
T PRK10049        218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI---------------IPPWAQRW--VAS  280 (765)
T ss_pred             HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC---------------CCHHHHHH--HHH
Confidence            7777774     43321 11    1134456779999999999999887531               132 2223  466


Q ss_pred             HHHcCCChhHHHHHhhHHHHHHHHhhCC-C--CchhHHHHHHHHHHhcCCcchHHHHhccCCC--CC-------------
Q 036356          294 GYAKNGYAEEAVKLFPKWMDYYIGKSEY-R--NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD-------------  355 (462)
Q Consensus       294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-------------  355 (462)
                      +|...|++++|+..|++.+     .... .  ........+..++.+.|++++|..+++.+.+  |.             
T Consensus       281 ~yl~~g~~e~A~~~l~~~l-----~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~  355 (765)
T PRK10049        281 AYLKLHQPEKAQSILTELF-----YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN  355 (765)
T ss_pred             HHHhcCCcHHHHHHHHHHh-----hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence            8999999999999999843     2221 1  1134566677788999999999999998764  21             


Q ss_pred             ---ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 036356          356 ---VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRAL  429 (462)
Q Consensus       356 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l  429 (462)
                         ...+..+...+...|+.++|++.++++..  ..|+ ...+..+...+...|++++|++.+++. ...|+ ...+..+
T Consensus       356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~  433 (765)
T PRK10049        356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ  433 (765)
T ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence               11234567788899999999999999988  5676 678889999999999999999999998 66676 5677778


Q ss_pred             HHHHHccCChHHHHHHHHhhhh
Q 036356          430 LSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       430 ~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                      ...+...|++++|...+.+.+.
T Consensus       434 a~~al~~~~~~~A~~~~~~ll~  455 (765)
T PRK10049        434 AWTALDLQEWRQMDVLTDDVVA  455 (765)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHH
Confidence            8899999999999988877654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.72  E-value=4.9e-15  Score=148.10  Aligned_cols=362  Identities=12%  Similarity=-0.032  Sum_probs=263.6

Q ss_pred             hHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCC-CcchH
Q 036356           13 PPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSN-EENEY   86 (462)
Q Consensus        13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~-~~~~~   86 (462)
                      +...-..+...|+++.|...|++.++..            |+...|..+   +.+.|++++|++.++..  ..| +...|
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~------------p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~  197 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECK------------PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKAL  197 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC------------CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            3455667778899999999999988764            455555555   88999999999999999  444 46689


Q ss_pred             HHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH----HHHHhhhcC----------CCCCeeeHHHH------------
Q 036356           87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCR----------YQPNVTLRNAM------------  140 (462)
Q Consensus        87 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~----l~~~~~~~~----------~~p~~~~~~~l------------  140 (462)
                      ..+..++...|++++|..-|......+.. ....    +.+.+.+..          ..++...+..+            
T Consensus       198 ~~~a~a~~~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  276 (615)
T TIGR00990       198 NRRANAYDGLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPR  276 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcc
Confidence            99999999999999998877655433210 1100    000000000          00111111110            


Q ss_pred             ------------------HHH------HHhCCChhHHHHHHHHhhhhhhhhcC-CCC-CchHHHHHHHHHHhcCCcccHH
Q 036356          141 ------------------ISG------YAKNGYAEEAVKLFPKWMDYYIGKSE-YRN-NVIVNTVLIDMYAKCGSVDLAP  194 (462)
Q Consensus       141 ------------------i~~------~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~  194 (462)
                                        +..      ....+++++|.+.|++.     ...+ ..| +...|+.+...+...|++++|+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~a-----l~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~  351 (615)
T TIGR00990       277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKA-----LDLGKLGEKEAIALNLRGTFKCLKGKHLEAL  351 (615)
T ss_pred             hhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHH-----HhcCCCChhhHHHHHHHHHHHHHcCCHHHHH
Confidence                              110      01236788999999986     4433 334 3567888888999999999999


Q ss_pred             HHhhccCC--CC-cchHHHHHHHHHhCc--hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCC
Q 036356          195 MFFDRTLD--KD-VVMRSAMIVGYGLHE--WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE  266 (462)
Q Consensus       195 ~~~~~m~~--~~-~~~~~~li~~~~~~~--~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  266 (462)
                      ..|++..+  |+ ...|..+...+...|  ++|...|++...  | +...+..+...+...|++++|...|+..++..  
T Consensus       352 ~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--  429 (615)
T TIGR00990       352 ADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--  429 (615)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence            99998764  33 446677777787777  999999999888  3 46788888899999999999999999998864  


Q ss_pred             cchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHH
Q 036356          267 LESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM  346 (462)
Q Consensus       267 ~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  346 (462)
                                     +.+...+..+...+.+.|++++|+..|.+.+     .. .+.+...|+.+...+...|++++|..
T Consensus       430 ---------------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al-----~~-~P~~~~~~~~lg~~~~~~g~~~~A~~  488 (615)
T TIGR00990       430 ---------------PDFIFSHIQLGVTQYKEGSIASSMATFRRCK-----KN-FPEAPDVYNYYGELLLDQNKFDEAIE  488 (615)
T ss_pred             ---------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----Hh-CCCChHHHHHHHHHHHHccCHHHHHH
Confidence                           2456778888889999999999999999843     21 22346788889999999999999999


Q ss_pred             HhccCCC--CC-ccch-------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHH
Q 036356          347 FFDRTLD--KD-VVMR-------SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIM  415 (462)
Q Consensus       347 ~~~~~~~--~~-~~~~-------~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~  415 (462)
                      .|++..+  |+ ...+       +.....+...|++++|.+++++...  +.|+ ...+..+...+.+.|++++|.+.|+
T Consensus       489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e  566 (615)
T TIGR00990       489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFE  566 (615)
T ss_pred             HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            9998653  32 1111       1122233446999999999999887  5676 4578899999999999999999999


Q ss_pred             hC
Q 036356          416 NM  417 (462)
Q Consensus       416 ~m  417 (462)
                      +.
T Consensus       567 ~A  568 (615)
T TIGR00990       567 RA  568 (615)
T ss_pred             HH
Confidence            87

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.67  E-value=1.7e-13  Score=139.60  Aligned_cols=355  Identities=9%  Similarity=-0.001  Sum_probs=257.1

Q ss_pred             eehhhhccCCChhhHHHHHHhh--cC-CCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC
Q 036356           57 FLDLYHLWSRTEWSAFGSFDGL--LS-NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN  133 (462)
Q Consensus        57 ~~~~~~~~~~~~~~A~~~~~~m--~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~  133 (462)
                      -|..+....|+.++|++++...  .. .+...+..+..++...|++++|..++++..+..+                 .+
T Consensus        20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-----------------~~   82 (765)
T PRK10049         20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-----------------QN   82 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CC
Confidence            3555588999999999999999  23 3344689999999999999999999999998754                 55


Q ss_pred             eeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--C-CcchHHH
Q 036356          134 VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSA  210 (462)
Q Consensus       134 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~  210 (462)
                      ...+..+...+...|+.++|+..+++.     ... .+.+.. +..+..++...|+.++|...+++..+  | +...+..
T Consensus        83 ~~a~~~la~~l~~~g~~~eA~~~l~~~-----l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~  155 (765)
T PRK10049         83 DDYQRGLILTLADAGQYDEALVKAKQL-----VSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTE  155 (765)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            667788889999999999999999996     332 334455 88889999999999999999998874  3 3444555


Q ss_pred             HHHHHHhCc--hHHHHHHHhhhc-CCc------chHHHHHHhhc-----Cccch---hhhHHHHHHHHHhCCCcchHHHH
Q 036356          211 MIVGYGLHE--WSAFGSFDGLLS-NEE------NEYGTALDCSC-----DLEFL---EQGKIVHGFMIKLGLELESDLLI  273 (462)
Q Consensus       211 li~~~~~~~--~~a~~~~~~m~~-~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~~~~~~~~~~~  273 (462)
                      +...+...+  +.|+..++.... |+.      .....++....     ..+++   +.|+..++.+.+.--.       
T Consensus       156 la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~-------  228 (765)
T PRK10049        156 YVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD-------  228 (765)
T ss_pred             HHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc-------
Confidence            666676666  779998887766 432      01222222222     22234   6788888888765210       


Q ss_pred             HHHHhhcCCCCHh-H----HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCC-CchhHHHHHHHHHHhcCCcchHHHH
Q 036356          274 SLTAVCRYQPNVT-L----WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR-NNVIVNTVLIDMYAKCGSVDLAPMF  347 (462)
Q Consensus       274 ~l~~~~~~~~~~~-~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~  347 (462)
                              .|+.. .    ....+.++...|+.++|...|+.     +.+.+.. |+- .-..+..+|...|++++|..+
T Consensus       229 --------~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~-----ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~  294 (765)
T PRK10049        229 --------NPDATADYQRARIDRLGALLARDRYKDVISEYQR-----LKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSI  294 (765)
T ss_pred             --------CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----hhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHH
Confidence                    13221 1    11113455677999999999999     4444422 332 122257789999999999999


Q ss_pred             hccCCC--CCc-----cchHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCC---HhHHHHHHHHHHhcCC
Q 036356          348 FDRTLD--KDV-----VMRSAMTVGYGLHGLGEEGWVLFHHIRKHG-----------IEPR---HQHYARVVDLLARAGY  406 (462)
Q Consensus       348 ~~~~~~--~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----------~~p~---~~~~~~li~~~~~~g~  406 (462)
                      |+++.+  |..     ..+..|..++...|++++|..+++.+.+..           -.|+   ...+..+...+...|+
T Consensus       295 l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~  374 (765)
T PRK10049        295 LTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND  374 (765)
T ss_pred             HHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence            998764  221     235566778899999999999999998741           1123   2345677888999999


Q ss_pred             hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhhcCCCCCC
Q 036356          407 SNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTDK  458 (462)
Q Consensus       407 ~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~pd~  458 (462)
                      +++|+++++++ ...| +...+..+...+...|+.++|+..+.+.+..  .||.
T Consensus       375 ~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~  426 (765)
T PRK10049        375 LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRN  426 (765)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCC
Confidence            99999999998 3334 5778899999999999999999888766553  3553

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=1.3e-13  Score=121.37  Aligned_cols=393  Identities=13%  Similarity=0.057  Sum_probs=263.7

Q ss_pred             CCChHHHHHhhccCCCCccchhhhHhHhhhCchh-----hhhhhcCC---CCCce--eehhh------------hccCCC
Q 036356           10 GCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-----CYLFDGLF---DRTIV--FLDLY------------HLWSRT   67 (462)
Q Consensus        10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~--~~~~~------------~~~~~~   67 (462)
                      +.|=+.|++.. .+|.++++.-+++.|.+.|...     .++|+-..   ..++.  -|.-.            -.+.|.
T Consensus       116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~  194 (625)
T KOG4422|consen  116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA  194 (625)
T ss_pred             hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence            44566676655 4678899999999999888765     22332221   01111  11111            112222


Q ss_pred             hhhHHHHHHhhcCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhC
Q 036356           68 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKN  147 (462)
Q Consensus        68 ~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~  147 (462)
                      ..   +++-+..+.+..+|.++|.++|+--..+.|.+++++......                +.+..+||.+|.+-.-.
T Consensus       195 vA---dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~----------------kv~~~aFN~lI~~~S~~  255 (625)
T KOG4422|consen  195 VA---DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG----------------KVYREAFNGLIGASSYS  255 (625)
T ss_pred             HH---HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh----------------eeeHHhhhhhhhHHHhh
Confidence            22   244444566778999999999999999999999999887766                68888899888764322


Q ss_pred             CChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHH----HhhccC----CCCcchHHHHHHHHHhCc
Q 036356          148 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM----FFDRTL----DKDVVMRSAMIVGYGLHE  219 (462)
Q Consensus       148 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~----~~~~~~~~~li~~~~~~~  219 (462)
                      ..    .++..+|     ....+.||..|+|+++++.++.|+++.|.+    ++.+|+    +|...+|..+|..+.+.+
T Consensus       256 ~~----K~Lv~EM-----isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~  326 (625)
T KOG4422|consen  256 VG----KKLVAEM-----ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRES  326 (625)
T ss_pred             cc----HHHHHHH-----HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccC
Confidence            22    6778888     788889999999999999999998876554    455555    478888998888888877


Q ss_pred             ---hHHHHHHHhhhc------------CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCC
Q 036356          220 ---WSAFGSFDGLLS------------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN  284 (462)
Q Consensus       220 ---~~a~~~~~~m~~------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  284 (462)
                         ..+..+..++..            .|...|...+..|.+..+.+-|.++...+....-..-            +.|+
T Consensus       327 dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~------------ig~~  394 (625)
T KOG4422|consen  327 DPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF------------IGPD  394 (625)
T ss_pred             CchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh------------cChH
Confidence               445555555544            3556788899999999999999998887654321000            1122


Q ss_pred             ---HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCc----c
Q 036356          285 ---VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV----V  357 (462)
Q Consensus       285 ---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~  357 (462)
                         ..-|..+....|+....+.....++.     |..+-+-|+..+...++++..-.|.++-..++|..+..-+.    .
T Consensus       395 ~~~~fYyr~~~~licq~es~~~~~~~Y~~-----lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~  469 (625)
T KOG4422|consen  395 QHRNFYYRKFFDLICQMESIDVTLKWYED-----LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD  469 (625)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence               33466777888888888888888888     66777888888888899999889999988888887764221    1


Q ss_pred             chHHHHHHHHhcC-Ch--------------------HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356          358 MRSAMTVGYGLHG-LG--------------------EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN  416 (462)
Q Consensus       358 ~~~~li~~~~~~~-~~--------------------~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  416 (462)
                      .-.-++..+++.. +.                    +.....-.+|.+..+  .....+...-.+.+.|+.++|.+++..
T Consensus       470 l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l  547 (625)
T KOG4422|consen  470 LREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGL  547 (625)
T ss_pred             HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHH
Confidence            1112222333322 11                    111122233444333  345567777778899999999998877


Q ss_pred             C-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356          417 M-------PIELRLSVRRALLSAWKIPMQQWENMLQTIRGI  450 (462)
Q Consensus       417 m-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  450 (462)
                      .       +..|......-++....+.++..+|+..++-|.
T Consensus       548 ~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~  588 (625)
T KOG4422|consen  548 FLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS  588 (625)
T ss_pred             HHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            6       223444444477788888888888887776553

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.63  E-value=1.1e-12  Score=131.75  Aligned_cols=373  Identities=11%  Similarity=-0.032  Sum_probs=234.3

Q ss_pred             hccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCc--eeehhh--hccCCChhhHHHHHHhhcCC-CcchHHHH--HHh
Q 036356           20 CVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTI--VFLDLY--HLWSRTEWSAFGSFDGLLSN-EENEYGTA--LDC   92 (462)
Q Consensus        20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~A~~~~~~m~~~-~~~~~~~l--l~~   92 (462)
                      ..+.|++..|...+++..+...            +.  ..+..+  +...|+.++|+..+++.+.| +...+..+  ...
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~P------------~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l  111 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAGP------------LQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA  111 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhCc------------cchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence            3477888899999999887763            32  122222  77779999999999988544 33344444  457


Q ss_pred             hcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCC
Q 036356           93 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN  172 (462)
Q Consensus        93 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  172 (462)
                      +...|++++|.++|+++.+..+                 -+...+..++..+...++.++|++.++..       ....|
T Consensus       112 y~~~gdyd~Aiely~kaL~~dP-----------------~n~~~l~gLa~~y~~~~q~~eAl~~l~~l-------~~~dp  167 (822)
T PRK14574        112 YRNEKRWDQALALWQSSLKKDP-----------------TNPDLISGMIMTQADAGRGGVVLKQATEL-------AERDP  167 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCC-----------------CCHHHHHHHHHHHhhcCCHHHHHHHHHHh-------cccCc
Confidence            7778999999999999988865                 33444455555666666666666666664       11233


Q ss_pred             CchHHHHHHHHHHhcCCcccHHHHhhccCC--C-CcchHHHHHHHHHhCc--hHHH------------------------
Q 036356          173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMIVGYGLHE--WSAF------------------------  223 (462)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~--~~a~------------------------  223 (462)
                      +...+-.++..+...++..+|++.++++.+  | +...+..+..+..+.|  ..|.                        
T Consensus       168 ~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a  247 (822)
T PRK14574        168 TVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAA  247 (822)
T ss_pred             chHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHH
Confidence            333333333333333444345555555542  2 2222333333444443  3333                        


Q ss_pred             ------------------------HHHHhhhc-----CCcch-----HHHHHHhhcCccchhhhHHHHHHHHHhCCCcch
Q 036356          224 ------------------------GSFDGLLS-----NEENE-----YGTALDCSCDLEFLEQGKIVHGFMIKLGLELES  269 (462)
Q Consensus       224 ------------------------~~~~~m~~-----~~~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  269 (462)
                                              .-++.+..     |....     ..=.+-++...++..++++.|+.+...|.+   
T Consensus       248 ~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~---  324 (822)
T PRK14574        248 EQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK---  324 (822)
T ss_pred             HHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC---
Confidence                                    33333322     21111     111233445555566666666666555432   


Q ss_pred             HHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhc
Q 036356          270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD  349 (462)
Q Consensus       270 ~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  349 (462)
                                   .-..+--.+.++|...+++++|+.++...+.+.-......++......|.-+|...+++++|..+++
T Consensus       325 -------------~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~  391 (822)
T PRK14574        325 -------------MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAV  391 (822)
T ss_pred             -------------CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence                         2344667788899999999999999988432110000123344556788889999999999999999


Q ss_pred             cCCC--CC-------------c---cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHH
Q 036356          350 RTLD--KD-------------V---VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHA  410 (462)
Q Consensus       350 ~~~~--~~-------------~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A  410 (462)
                      .+.+  |.             .   ..+..++..+.-.|+..+|++.++++..  ..|. ......+.+.+...|.+.+|
T Consensus       392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A  469 (822)
T PRK14574        392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKA  469 (822)
T ss_pred             HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            8874  20             0   0123467778889999999999999977  6664 77888899999999999999


Q ss_pred             HHHHHhC-CCCCC-HHHHHHHHHHHHccCChHHHHHHH
Q 036356          411 FKFIMNM-PIELR-LSVRRALLSAWKIPMQQWENMLQT  446 (462)
Q Consensus       411 ~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~  446 (462)
                      ++.++.. .+.|+ ..+......++...+++.+|...+
T Consensus       470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~  507 (822)
T PRK14574        470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLT  507 (822)
T ss_pred             HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            9999777 55664 456677888888889998886444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.63  E-value=2.9e-12  Score=131.25  Aligned_cols=161  Identities=12%  Similarity=-0.081  Sum_probs=125.1

Q ss_pred             CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC--CCCccchH
Q 036356          283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRS  360 (462)
Q Consensus       283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~  360 (462)
                      |+...+..+...+.+.|+.++|...+.+.+     ... ..+...+..+.....+.|++++|...+++..  .|+...|.
T Consensus       540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL-----~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~  613 (987)
T PRK09782        540 MSNEDLLAAANTAQAAGNGAARDRWLQQAE-----QRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYV  613 (987)
T ss_pred             CCcHHHHHHHHHHHHCCCHHHHHHHHHHHH-----hcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence            445556667778888999999999998843     222 2223333334444455699999999999877  47777888


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccC
Q 036356          361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPM  437 (462)
Q Consensus       361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~  437 (462)
                      .+...+.+.|++++|...+++...  ..|+ ...+..+..++...|++++|+..+++. ...| +...+..+..++...|
T Consensus       614 ~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG  691 (987)
T PRK09782        614 ARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD  691 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            888999999999999999999998  7787 567778888999999999999999987 4455 5668889999999999


Q ss_pred             ChHHHHHHHHhhhh
Q 036356          438 QQWENMLQTIRGID  451 (462)
Q Consensus       438 ~~~~a~~~~~~~~~  451 (462)
                      +.++|+..+.+.+.
T Consensus       692 d~~eA~~~l~~Al~  705 (987)
T PRK09782        692 DMAATQHYARLVID  705 (987)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999988877654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.62  E-value=3.6e-12  Score=128.00  Aligned_cols=357  Identities=10%  Similarity=0.019  Sum_probs=261.6

Q ss_pred             hccCCChhhHHHHHHhh--cCCCcc-hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL--LSNEEN-EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      ..+.|+++.|++.|++.  ..|+.. ....++..+...|+.++|...+++....                   -+...+.
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-------------------~n~~~~~  104 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-------------------MNISSRG  104 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-------------------CCCCHHH
Confidence            88999999999999999  666642 3338888888999999999999998821                   1233333


Q ss_pred             HH--HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHH
Q 036356          139 AM--ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG  216 (462)
Q Consensus       139 ~l--i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~  216 (462)
                      .+  ...+...|++++|+++|+++     .+. .+-+...+..++..|...++.++|++.++++...+......+..++.
T Consensus       105 llalA~ly~~~gdyd~Aiely~ka-----L~~-dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL  178 (822)
T PRK14574        105 LASAARAYRNEKRWDQALALWQSS-----LKK-DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYL  178 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH-----Hhh-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHH
Confidence            33  55788899999999999997     332 23346667788899999999999999999998655444444555666


Q ss_pred             hCc----hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHH--------------------HHhCCCcch
Q 036356          217 LHE----WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFM--------------------IKLGLELES  269 (462)
Q Consensus       217 ~~~----~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~--------------------~~~~~~~~~  269 (462)
                      ..+    .+|++.++++..  |+ ...+..+..++.+.|-...|.++...-                    ++.+..++.
T Consensus       179 ~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~  258 (822)
T PRK14574        179 NRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTR  258 (822)
T ss_pred             HHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccc
Confidence            633    579999999999  64 556677888888888887777665532                    111211110


Q ss_pred             H-------H------HHHHHHhhcCCCCH-hHH----HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHH
Q 036356          270 D-------L------LISLTAVCRYQPNV-TLW----NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL  331 (462)
Q Consensus       270 ~-------~------~~~l~~~~~~~~~~-~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l  331 (462)
                      .       +      +..++..-+..|.. ..|    --.+-++...|+..++++.|+.     +...+.+....+-..+
T Consensus       259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~-----l~~~~~~~P~y~~~a~  333 (822)
T PRK14574        259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA-----MEAEGYKMPDYARRWA  333 (822)
T ss_pred             cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----hhhcCCCCCHHHHHHH
Confidence            0       0      01111111122322 222    2345578889999999999999     7777876667788889


Q ss_pred             HHHHHhcCCcchHHHHhccCCCCC---------ccchHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCC-
Q 036356          332 IDMYAKCGSVDLAPMFFDRTLDKD---------VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI-----------EPR-  390 (462)
Q Consensus       332 i~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~-  390 (462)
                      .++|...+++++|..+++.+..++         ......|..+|...+++++|..+++.+.+.--           .|+ 
T Consensus       334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~  413 (822)
T PRK14574        334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND  413 (822)
T ss_pred             HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence            999999999999999999875321         22246789999999999999999999998310           122 


Q ss_pred             --HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356          391 --HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIR  448 (462)
Q Consensus       391 --~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~  448 (462)
                        ...+..++..+...|++.+|++.++++ ...| |......+...+...|+..+|...+..
T Consensus       414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~  475 (822)
T PRK14574        414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKA  475 (822)
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence              334456778889999999999999999 3344 788899999999999999999988843

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=1.4e-12  Score=115.04  Aligned_cols=373  Identities=10%  Similarity=0.060  Sum_probs=235.6

Q ss_pred             CCCCCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhhhccCCChhhHHHHHHhh----cCC
Q 036356            6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGL----LSN   81 (462)
Q Consensus         6 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~m----~~~   81 (462)
                      .|-+..||..+|.++|+.-..+.|.+++++-......          -+.-++|.+ ...-.+....++..+|    ..|
T Consensus       203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k----------v~~~aFN~l-I~~~S~~~~K~Lv~EMisqkm~P  271 (625)
T KOG4422|consen  203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK----------VYREAFNGL-IGASSYSVGKKLVAEMISQKMTP  271 (625)
T ss_pred             cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe----------eeHHhhhhh-hhHHHhhccHHHHHHHHHhhcCC
Confidence            3556789999999999999999999999988766542          366677777 0000112226788888    899


Q ss_pred             CcchHHHHHHhhcCccchhh----HHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhH-HHHH
Q 036356           82 EENEYGTALDCSCDLEFLEQ----GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEE-AVKL  156 (462)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~  156 (462)
                      |..|||+++++.++.|+++.    |.+++.+|++.|+                .|...+|..+|..+.+.++..+ |..+
T Consensus       272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGV----------------ePsLsSyh~iik~f~re~dp~k~as~~  335 (625)
T KOG4422|consen  272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGV----------------EPSLSSYHLIIKNFKRESDPQKVASSW  335 (625)
T ss_pred             chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC----------------CcchhhHHHHHHHhcccCCchhhhHHH
Confidence            99999999999999998765    5688999999999                9999999999999999888744 4555


Q ss_pred             HHHhhhhhhhhcCCCC----CchHHHHHHHHHHhcCCcccHHHHhhccCC--------CCc---chHHHHHHHHHhCc--
Q 036356          157 FPKWMDYYIGKSEYRN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--------KDV---VMRSAMIVGYGLHE--  219 (462)
Q Consensus       157 ~~~m~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~~~---~~~~~li~~~~~~~--  219 (462)
                      +.+.+... ....++|    |...|.+.+..|.+..|.+.|.++-.-...        ++.   .-|..+....++..  
T Consensus       336 i~dI~N~l-tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~  414 (625)
T KOG4422|consen  336 INDIQNSL-TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI  414 (625)
T ss_pred             HHHHHHhh-ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            55542111 2222333    456778889999999999999887654442        111   12444555555555  


Q ss_pred             hHHHHHHHhhhc----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 036356          220 WSAFGSFDGLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY  295 (462)
Q Consensus       220 ~~a~~~~~~m~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~  295 (462)
                      +..+.+|+.|..    |+..+...++++..-.|.++-..+++..++..|...+.....-++..                 
T Consensus       415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~-----------------  477 (625)
T KOG4422|consen  415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILML-----------------  477 (625)
T ss_pred             HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHH-----------------
Confidence            888999999988    99999999999999999999999999999988865332222221111                 


Q ss_pred             HcCCChhHHHHHhhHHHHHHHHhhCCCCchh---HHHHHHHHHHhcCCcchH-HHHhccCC--CCCccchHHHHHHHHhc
Q 036356          296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI---VNTVLIDMYAKCGSVDLA-PMFFDRTL--DKDVVMRSAMTVGYGLH  369 (462)
Q Consensus       296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A-~~~~~~~~--~~~~~~~~~li~~~~~~  369 (462)
                                          +.+....|+..   -+.....-|+.  ++-++ ..--.++.  +......+.....+.+.
T Consensus       478 --------------------L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~  535 (625)
T KOG4422|consen  478 --------------------LARDKLHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQRAQDWPATSLNCIAILLLRA  535 (625)
T ss_pred             --------------------HhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHHhccCChhHHHHHHHHHHHc
Confidence                                11222222212   11111111110  01000 00011111  23444555666666677


Q ss_pred             CChHHHHHHHHHHHHC-CCCCCHhHHH---HHHHHHHhcCChHHHHHHHHhC--CCCCCHH-HHHHHHHHHHccCChHHH
Q 036356          370 GLGEEGWVLFHHIRKH-GIEPRHQHYA---RVVDLLARAGYSNHAFKFIMNM--PIELRLS-VRRALLSAWKIPMQQWEN  442 (462)
Q Consensus       370 ~~~~~a~~~~~~m~~~-g~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m--~~~p~~~-~~~~l~~~~~~~~~~~~a  442 (462)
                      |..++|.++|..+.+. +--|-....+   -+++.-...+.+..|..+++-|  .-.|... .-+.+...|.-.....++
T Consensus       536 G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~  615 (625)
T KOG4422|consen  536 GRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEA  615 (625)
T ss_pred             chHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHH
Confidence            7777777777776544 2223333333   4555556667777777777666  1112222 445555665555444444


Q ss_pred             HHH
Q 036356          443 MLQ  445 (462)
Q Consensus       443 ~~~  445 (462)
                      +.-
T Consensus       616 ls~  618 (625)
T KOG4422|consen  616 LSN  618 (625)
T ss_pred             Hhh
Confidence            433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.59  E-value=5e-12  Score=129.57  Aligned_cols=208  Identities=9%  Similarity=-0.121  Sum_probs=144.7

Q ss_pred             hHHHHHhhc--cCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCCCcch
Q 036356           13 PPLVLKACV--ALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSNEENE   85 (462)
Q Consensus        13 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~~~~~   85 (462)
                      |..++.+..  ..|++++|...|+..++....           +...+..+   |...|++++|+..+++.  ..|+-..
T Consensus        45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-----------n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~  113 (987)
T PRK09782         45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPD-----------NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDAR  113 (987)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence            334444443  338899999999999887642           34444444   99999999999999999  5565555


Q ss_pred             HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH---HHHH--------hhhcC------------CCCCeeeHHHH-H
Q 036356           86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISL--------TAVCR------------YQPNVTLRNAM-I  141 (462)
Q Consensus        86 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---l~~~--------~~~~~------------~~p~~~~~~~l-i  141 (462)
                      |..++..+   ++.++|..+++++.+..+. .++.   +...        |.+.+            +.|+..+.... .
T Consensus       114 ~~~~La~i---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~  189 (987)
T PRK09782        114 LERSLAAI---PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLL  189 (987)
T ss_pred             HHHHHHHh---ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHH
Confidence            55545333   8899999999999988762 1222   1121        22222            33345545555 7


Q ss_pred             HHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHh-cCCcccHHHHhhccCCCCcchHHHHHHHHHhCc-
Q 036356          142 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK-CGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-  219 (462)
Q Consensus       142 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~-  219 (462)
                      ..|.+.|++++|++++.++     .+.+ +.+..-...|-.+|.. .++ +++..+++...+.+...+..+...|.+.| 
T Consensus       190 rlY~~l~dw~~Ai~lL~~L-----~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~  262 (987)
T PRK09782        190 QRAIYLKQWSQADTLYNEA-----RQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGE  262 (987)
T ss_pred             HHHHHHhCHHHHHHHHHHH-----HhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCC
Confidence            8899999999999999997     4444 3334445667678887 477 88888877655567888889999999999 


Q ss_pred             -hHHHHHHHhhhc-----CCcchHHHHHH
Q 036356          220 -WSAFGSFDGLLS-----NEENEYGTALD  242 (462)
Q Consensus       220 -~~a~~~~~~m~~-----~~~~~~~~ll~  242 (462)
                       ++|..+++++..     |...++-.++.
T Consensus       263 ~~~A~~~L~~~~~~~~~~~~~~~~~~~l~  291 (987)
T PRK09782        263 KARLQHYLIENKPLFTTDAQEKSWLYLLS  291 (987)
T ss_pred             HHHHHHHHHhCcccccCCCccHHHHHHHH
Confidence             899999998877     55556555543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.48  E-value=7.6e-11  Score=113.54  Aligned_cols=356  Identities=12%  Similarity=0.011  Sum_probs=261.5

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +++ |+.++|.+++.++   .+.+...|.+|..+|-+.|+.+++...+-.+....+                 .|...|.
T Consensus       150 far-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-----------------~d~e~W~  211 (895)
T KOG2076|consen  150 FAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-----------------KDYELWK  211 (895)
T ss_pred             HHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-----------------CChHHHH
Confidence            555 9999999999999   556778999999999999999999888776665554                 5778999


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCc----chHH----H
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV----VMRS----A  210 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~----~  210 (462)
                      .+..-..+.|+++.|.-+|.+.     ... -+++...+---...|-+.|+...|...|.++.+.++    .-.-    .
T Consensus       212 ~ladls~~~~~i~qA~~cy~rA-----I~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~  285 (895)
T KOG2076|consen  212 RLADLSEQLGNINQARYCYSRA-----IQA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR  285 (895)
T ss_pred             HHHHHHHhcccHHHHHHHHHHH-----Hhc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence            9999999999999999999995     322 344555555577889999999999999988875333    1122    2


Q ss_pred             HHHHHHhCc--hHHHHHHHhhhc-----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHH---------
Q 036356          211 MIVGYGLHE--WSAFGSFDGLLS-----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS---------  274 (462)
Q Consensus       211 li~~~~~~~--~~a~~~~~~m~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------  274 (462)
                      .++.+...+  +.|.+.++....     .+...++.++..+.+...++.+......+.....++|..-+.+         
T Consensus       286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~  365 (895)
T KOG2076|consen  286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN  365 (895)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence            344555555  777777776665     5566788888999999999999988888777555555444311         


Q ss_pred             -HHHh-hcCCCCHhHHHHHHHHHHcCC--ChhHHHHHhhHHHHHHHHhhCC--CCchhHHHHHHHHHHhcCCcchHHHHh
Q 036356          275 -LTAV-CRYQPNVTLWNAMISGYAKNG--YAEEAVKLFPKWMDYYIGKSEY--RNNVIVNTVLIDMYAKCGSVDLAPMFF  348 (462)
Q Consensus       275 -l~~~-~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~  348 (462)
                       +... -+..++...+ .+.-++.+.+  ...+++.-|       ......  .-+...|.-+.++|...|++.+|.++|
T Consensus       366 ~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~-------l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l  437 (895)
T KOG2076|consen  366 ALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHF-------LVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLL  437 (895)
T ss_pred             ccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHH-------HHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence             1111 1133444441 2222333333  344444433       334443  335678888999999999999999999


Q ss_pred             ccCCC----CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC------
Q 036356          349 DRTLD----KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM------  417 (462)
Q Consensus       349 ~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m------  417 (462)
                      ..+..    .+...|-.+..+|...|.++.|.+.++....  ..|+ ...-.+|-..+.+.|+.++|.+.+..+      
T Consensus       438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~  515 (895)
T KOG2076|consen  438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGR  515 (895)
T ss_pred             HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence            98873    3566899999999999999999999999998  7787 556677888899999999999999996      


Q ss_pred             -----CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356          418 -----PIELRLSVRRALLSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       418 -----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                           ...|+....-.....+...|+.++-+....+|+.
T Consensus       516 ~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~  554 (895)
T KOG2076|consen  516 NAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD  554 (895)
T ss_pred             chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence                 2345555666777888888888876655555544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.43  E-value=7.2e-11  Score=111.26  Aligned_cols=215  Identities=13%  Similarity=0.012  Sum_probs=154.3

Q ss_pred             hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 036356          220 WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYA  296 (462)
Q Consensus       220 ~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~  296 (462)
                      +.|...+++..+  | +......+...+.+.|++++|.+++..+.+.+..++. ....+        ....|..++....
T Consensus       170 ~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l--------~~~a~~~l~~~~~  240 (398)
T PRK10747        170 HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAML--------EQQAWIGLMDQAM  240 (398)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHH--------HHHHHHHHHHHHH
Confidence            444444444444  2 3455667778889999999999999999998764211 00000        0013334444444


Q ss_pred             cCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHH
Q 036356          297 KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW  376 (462)
Q Consensus       297 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  376 (462)
                      ...+.+...++++..     . ...+.++.....+...+...|+.++|.+++++..+.....--.++.+....++.+++.
T Consensus       241 ~~~~~~~l~~~w~~l-----p-~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al  314 (398)
T PRK10747        241 ADQGSEGLKRWWKNQ-----S-RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLE  314 (398)
T ss_pred             HhcCHHHHHHHHHhC-----C-HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHH
Confidence            445555666665552     1 1234567788889999999999999999998876522222233455666679999999


Q ss_pred             HHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356          377 VLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       377 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                      +..+...+  -.|+ ...+.++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|...+.+.+.
T Consensus       315 ~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        315 KVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999998  6677 556889999999999999999999998 7789999999999999999999999887776543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.43  E-value=1.2e-10  Score=103.86  Aligned_cols=347  Identities=14%  Similarity=0.108  Sum_probs=220.1

Q ss_pred             hccCCChhhHHHHHHhh--cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH-----------HHHHhhhc
Q 036356           62 HLWSRTEWSAFGSFDGL--LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-----------LISLTAVC  128 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-----------l~~~~~~~  128 (462)
                      +.+.|.++.|+..|+++  ..||..+-..|+-++...|+-++..+.|..|......++.|.           ++.--.+.
T Consensus       286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n  365 (840)
T KOG2003|consen  286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN  365 (840)
T ss_pred             EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence            89999999999999998  778876555555555667888999999999987654223221           22222222


Q ss_pred             C---------------------------CCCCeee---HH------------------HHHHHHHhCCChhHHHHHHHHh
Q 036356          129 R---------------------------YQPNVTL---RN------------------AMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus       129 ~---------------------------~~p~~~~---~~------------------~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      .                           +.|+-..   |.                  .-...+.++|+++.|++++..+
T Consensus       366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~  445 (840)
T KOG2003|consen  366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF  445 (840)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence            1                           1222111   10                  0012355666666666666654


Q ss_pred             hhhhhhhcCCCCCchHHHHHHHH-HH-hcCCcccHHHHhhccCCCCcchHHHHH---H-HHHhCc-hHHHHHHHhhhcCC
Q 036356          161 MDYYIGKSEYRNNVIVNTVLIDM-YA-KCGSVDLAPMFFDRTLDKDVVMRSAMI---V-GYGLHE-WSAFGSFDGLLSNE  233 (462)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~li~~-~~-~~g~~~~a~~~~~~m~~~~~~~~~~li---~-~~~~~~-~~a~~~~~~m~~~~  233 (462)
                           .+..-+.-...-|.|--. |. --.++..|...-+.....|...-.++.   . +|.... ++|.+.|++....|
T Consensus       446 -----~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd  520 (840)
T KOG2003|consen  446 -----EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND  520 (840)
T ss_pred             -----HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence                 222222212122211111 11 123444554444443322222111111   0 122222 77777777777643


Q ss_pred             cchHHHHH---HhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhH
Q 036356          234 ENEYGTAL---DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK  310 (462)
Q Consensus       234 ~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  310 (462)
                      ...-..|.   -.+-..|++++|+..|-.+...                 ...++...-.+...|-...++..|.+++-.
T Consensus       521 asc~ealfniglt~e~~~~ldeald~f~klh~i-----------------l~nn~evl~qianiye~led~aqaie~~~q  583 (840)
T KOG2003|consen  521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-----------------LLNNAEVLVQIANIYELLEDPAQAIELLMQ  583 (840)
T ss_pred             hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-----------------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            33222222   2344667778887777665432                 124666666677777777888888888744


Q ss_pred             HHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036356          311 WMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG  386 (462)
Q Consensus       311 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  386 (462)
                             ...+.| |+.....|.+.|-+.|+-..|.+.+-.--   ..|..+..-|..-|....-++++..+|++..-  
T Consensus       584 -------~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--  654 (840)
T KOG2003|consen  584 -------ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--  654 (840)
T ss_pred             -------hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence                   445545 68888999999999999999988775433   35777878888888888889999999999887  


Q ss_pred             CCCCHhHHHHHHHHHH-hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCh
Q 036356          387 IEPRHQHYARVVDLLA-RAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKIPMQQ  439 (462)
Q Consensus       387 ~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~  439 (462)
                      ++|+..-|..++..|. +.|++.+|..+++..  .+..|......|++.+-..|..
T Consensus       655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence            9999999999888665 579999999999998  5666888888899888777653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.42  E-value=3.7e-13  Score=121.08  Aligned_cols=157  Identities=18%  Similarity=0.202  Sum_probs=71.5

Q ss_pred             HHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHH
Q 036356          237 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI  316 (462)
Q Consensus       237 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  316 (462)
                      +...+..+.+.++++++.++++.+....-               .+.+...|..+...+.+.|+.++|++.+++.+.   
T Consensus       113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~---------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---  174 (280)
T PF13429_consen  113 LLSALQLYYRLGDYDEAEELLEKLEELPA---------------APDSARFWLALAEIYEQLGDPDKALRDYRKALE---  174 (280)
T ss_dssp             -----H-HHHTT-HHHHHHHHHHHHH-T------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHhccC---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Confidence            33444444555555555555555543221               124555555666666666666666666666321   


Q ss_pred             HhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CH
Q 036356          317 GKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-RH  391 (462)
Q Consensus       317 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~  391 (462)
                          ..| |....+.++..+...|+.+++..+++...   ..|...|..+..+|...|++++|+.+|++..+  ..| |.
T Consensus       175 ----~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~  248 (280)
T PF13429_consen  175 ----LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDP  248 (280)
T ss_dssp             ----H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-H
T ss_pred             ----cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--cccccc
Confidence                223 24455556666666666665555554433   23455556666666666666666666666655  444 35


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          392 QHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       392 ~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .....+.+++...|+.++|.++.++.
T Consensus       249 ~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  249 LWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHHHHHT---------------
T ss_pred             cccccccccccccccccccccccccc
Confidence            55556666666666666666655543

>PF13041 PPR_2: PPR repeat family

Probab=99.40  E-value=6.1e-13  Score=84.49  Aligned_cols=50  Identities=32%  Similarity=0.522  Sum_probs=46.9

Q ss_pred             CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 036356          354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR  403 (462)
Q Consensus       354 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  403 (462)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999999875

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.39  E-value=7e-13  Score=119.28  Aligned_cols=256  Identities=14%  Similarity=0.088  Sum_probs=109.4

Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcC-CCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHh
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSE-YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL  217 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~  217 (462)
                      .+...+.+.|++++|++++++-     .... .+.|...|..+...+-..++++.|...++++...+..           
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~-----~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-----------   76 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKA-----AQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-----------   76 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccc-----------
Confidence            4466677888888888888552     2222 2334455555556666677888888888877654332           


Q ss_pred             CchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc
Q 036356          218 HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK  297 (462)
Q Consensus       218 ~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~  297 (462)
                                     +...+..++.. ...+++++|.+++....+..                  ++...+..++..+.+
T Consensus        77 ---------------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------------------~~~~~l~~~l~~~~~  122 (280)
T PF13429_consen   77 ---------------NPQDYERLIQL-LQDGDPEEALKLAEKAYERD------------------GDPRYLLSALQLYYR  122 (280)
T ss_dssp             ---------------------------------------------------------------------------H-HHH
T ss_pred             ---------------ccccccccccc-cccccccccccccccccccc------------------cccchhhHHHHHHHH
Confidence                           12234444444 57888999998887765542                  566777888899999


Q ss_pred             CCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHH
Q 036356          298 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEE  374 (462)
Q Consensus       298 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~  374 (462)
                      .++++++..++....    .......+...|..+...+.+.|+.++|.+++++..  .| |....+.++..+...|+.++
T Consensus       123 ~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~  198 (280)
T PF13429_consen  123 LGDYDEAEELLEKLE----ELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDE  198 (280)
T ss_dssp             TT-HHHHHHHHHHHH----H-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHH
T ss_pred             HhHHHHHHHHHHHHH----hccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHH
Confidence            999999999998832    223345678889899999999999999999999987  35 46778899999999999999


Q ss_pred             HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356          375 GWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRG  449 (462)
Q Consensus       375 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~  449 (462)
                      +.+++....+.. +.|...+..+..+|...|+.++|+..+++. ...| |+.....+..++...|+.++|.....+.
T Consensus       199 ~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  199 AREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred             HHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999988853 445678889999999999999999999998 3334 8888899999999999999998766554

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.38  E-value=2.7e-10  Score=107.35  Aligned_cols=283  Identities=13%  Similarity=-0.014  Sum_probs=193.1

Q ss_pred             hccCCChhhHHHHHHhh-c-CCCcch-HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL-L-SNEENE-YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m-~-~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      ....|++++|.+.+... . .+++.. |.....+..+.|+++.|...+.++.+.                  .|+...+.
T Consensus        94 a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~------------------~~~~~~~~  155 (398)
T PRK10747         94 KLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL------------------ADNDQLPV  155 (398)
T ss_pred             HHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------------CCcchHHH
Confidence            55579999999888777 2 222233 333344447889999999999999875                  34554333


Q ss_pred             --HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcch---HHHHHH
Q 036356          139 --AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM---RSAMIV  213 (462)
Q Consensus       139 --~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~li~  213 (462)
                        .....+...|+++.|.+.++++     .+.. +-+......+...|.+.|++++|.+++..+.+.....   ...+- 
T Consensus       156 ~l~~a~l~l~~g~~~~Al~~l~~~-----~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~-  228 (398)
T PRK10747        156 EITRVRIQLARNENHAARHGVDKL-----LEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLE-  228 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH-----HhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHH-
Confidence              3356788899999999999986     3332 4456778888999999999999999988877533221   11000 


Q ss_pred             HHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHH
Q 036356          214 GYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS  293 (462)
Q Consensus       214 ~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~  293 (462)
                                          ..+|..++.......+.+...++++.+-+.                 .+.+......+..
T Consensus       229 --------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-----------------~~~~~~~~~~~A~  271 (398)
T PRK10747        229 --------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-----------------TRHQVALQVAMAE  271 (398)
T ss_pred             --------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-----------------HhCCHHHHHHHHH
Confidence                                001122222222223334444444444222                 1246777888888


Q ss_pred             HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcC
Q 036356          294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHG  370 (462)
Q Consensus       294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~  370 (462)
                      .+...|+.++|.+.+.+.     .+  ..|+...  .++.+....++.+++.+..+...+  | |...+..+...|.+.+
T Consensus       272 ~l~~~g~~~~A~~~L~~~-----l~--~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~  342 (398)
T PRK10747        272 HLIECDDHDTAQQIILDG-----LK--RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG  342 (398)
T ss_pred             HHHHCCCHHHHHHHHHHH-----Hh--cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence            999999999999999873     23  2344322  123344456888888888887763  4 4455778889999999


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       371 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      ++++|.+.|+...+  ..|+..+|..+...+.+.|+.++|.+++++-
T Consensus       343 ~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        343 EWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             CHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999998  7899999999999999999999999988865

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=4.2e-11  Score=111.78  Aligned_cols=274  Identities=13%  Similarity=0.052  Sum_probs=189.0

Q ss_pred             chhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCe-eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCC-CCCch
Q 036356           98 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV-TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RNNVI  175 (462)
Q Consensus        98 ~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~  175 (462)
                      +.++|...|+.+...                  .+|. .+...+..+|...+++++|.++|+..+    ..... .-+..
T Consensus       334 ~~~~A~~~~~klp~h------------------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r----~~~p~rv~~me  391 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH------------------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVR----RIEPYRVKGME  391 (638)
T ss_pred             HHHHHHHHHHhhHHh------------------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhccccccchh
Confidence            356777777774443                  2333 344456677777788888888887752    11111 22456


Q ss_pred             HHHHHHHHHHhcCCccc-HHHHhhccCCCCcchHHHHHHHHHhCc--hHHHHHHHhhhc--C-CcchHHHHHHhhcCccc
Q 036356          176 VNTVLIDMYAKCGSVDL-APMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS--N-EENEYGTALDCSCDLEF  249 (462)
Q Consensus       176 ~~~~li~~~~~~g~~~~-a~~~~~~m~~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~  249 (462)
                      +|.+.+.-+-+.-...- |..+.+ +....+.+|-++..+|...+  +.|++.|++..+  | ..++|+.+-.-+.....
T Consensus       392 iyST~LWHLq~~v~Ls~Laq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee  470 (638)
T KOG1126|consen  392 IYSTTLWHLQDEVALSYLAQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEE  470 (638)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHH
Confidence            67666654432211111 222222 22345567777777777777  777777777777  4 56677777777788888


Q ss_pred             hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHH---HHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-ch
Q 036356          250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA---MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NV  325 (462)
Q Consensus       250 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~  325 (462)
                      +|.|...|...+.                    .|...||+   +.-.|.+.++.+.|+-.|++.       ..+.| +.
T Consensus       471 ~d~a~~~fr~Al~--------------------~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA-------~~INP~ns  523 (638)
T KOG1126|consen  471 FDKAMKSFRKALG--------------------VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA-------VEINPSNS  523 (638)
T ss_pred             HHhHHHHHHhhhc--------------------CCchhhHHHHhhhhheeccchhhHHHHHHHhh-------hcCCccch
Confidence            8999888887764                    55555555   455788999999999999883       34555 35


Q ss_pred             hHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHH
Q 036356          326 IVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLL  401 (462)
Q Consensus       326 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~  401 (462)
                      +....+...+.+.|+.++|+.++++..   ..|+.+--.-+..+...+++++|+..++++++  +.|+ ...|..+...|
T Consensus       524 vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~  601 (638)
T KOG1126|consen  524 VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIY  601 (638)
T ss_pred             hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHH
Confidence            566667778888999999999999765   34665555667777788999999999999998  8888 56778888899


Q ss_pred             HhcCChHHHHHHHHhC-CCCCCH
Q 036356          402 ARAGYSNHAFKFIMNM-PIELRL  423 (462)
Q Consensus       402 ~~~g~~~~A~~~~~~m-~~~p~~  423 (462)
                      -+.|+.+.|+.-|..+ ...|..
T Consensus       602 k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  602 KRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             HHHccchHHHHhhHHHhcCCCcc
Confidence            9999999999888877 555543

>TIGR00540 hemY_coli hemY protein

Probab=99.37  E-value=3.8e-10  Score=106.93  Aligned_cols=209  Identities=15%  Similarity=0.053  Sum_probs=141.3

Q ss_pred             hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHH----HHH
Q 036356          220 WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN----AMI  292 (462)
Q Consensus       220 ~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~li  292 (462)
                      +.|...++++.+  | +......+...+.+.|++++|.+.+..+.+.+..                 +...+.    ...
T Consensus       170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-----------------~~~~~~~l~~~a~  232 (409)
T TIGR00540       170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-----------------DDEEFADLEQKAE  232 (409)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-----------------CHHHHHHHHHHHH
Confidence            444444444444  3 3445667788889999999999999999998753                 222121    011


Q ss_pred             HHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--CCccc---hHHHHHHHH
Q 036356          293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVM---RSAMTVGYG  367 (462)
Q Consensus       293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~  367 (462)
                      ..+...+..+++.+.+......  .....+.+...+..+...+...|+.++|.+++++..+  ||...   .........
T Consensus       233 ~~~l~~~~~~~~~~~L~~~~~~--~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l  310 (409)
T TIGR00540       233 IGLLDEAMADEGIDGLLNWWKN--QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL  310 (409)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHH--CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc
Confidence            1112222222222333331110  0111223778888899999999999999999998874  54432   122223334


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHccCChHH
Q 036356          368 LHGLGEEGWVLFHHIRKHGIEPRH---QHYARVVDLLARAGYSNHAFKFIMN--M-PIELRLSVRRALLSAWKIPMQQWE  441 (462)
Q Consensus       368 ~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~l~~~~~~~~~~~~  441 (462)
                      ..++.+.+.+.++...+  ..|+.   ....++...+.+.|++++|.+.|+.  . ...|+...+..+...+.+.|+.++
T Consensus       311 ~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~  388 (409)
T TIGR00540       311 KPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAE  388 (409)
T ss_pred             CCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHH
Confidence            45778889999988887  56664   4566889999999999999999994  3 678999999999999999999999


Q ss_pred             HHHHHHhh
Q 036356          442 NMLQTIRG  449 (462)
Q Consensus       442 a~~~~~~~  449 (462)
                      |...+.+.
T Consensus       389 A~~~~~~~  396 (409)
T TIGR00540       389 AAAMRQDS  396 (409)
T ss_pred             HHHHHHHH
Confidence            98877765

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13041 PPR_2: PPR repeat family

Probab=99.36  E-value=9.7e-13  Score=83.55  Aligned_cols=50  Identities=38%  Similarity=0.561  Sum_probs=48.5

Q ss_pred             CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHh
Q 036356          132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK  186 (462)
Q Consensus       132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~  186 (462)
                      ||..+||++|++|++.|++++|.++|++|     .+.|++||..||+++|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M-----~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEM-----KKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHH-----HHcCCCCCHHHHHHHHHHHcC
Confidence            89999999999999999999999999999     899999999999999999975

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.36  E-value=3.1e-10  Score=110.19  Aligned_cols=293  Identities=13%  Similarity=0.058  Sum_probs=159.0

Q ss_pred             CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC-------CC
Q 036356          132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------KD  204 (462)
Q Consensus       132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~~  204 (462)
                      .|...|-.+...+- .++...++..|..-.. .....+-.+-....|.+...+...|++++|...|++...       +|
T Consensus       412 ~d~~a~l~laql~e-~~d~~~sL~~~~~A~d-~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d  489 (1018)
T KOG2002|consen  412 VDSEAWLELAQLLE-QTDPWASLDAYGNALD-ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD  489 (1018)
T ss_pred             ccHHHHHHHHHHHH-hcChHHHHHHHHHHHH-HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence            34445554444443 3444444655554311 113344446677788888888888888888888875442       22


Q ss_pred             cc-------hHHHHHHHHHhCc--hHHHHHHHhhhc--CCcch-HHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHH
Q 036356          205 VV-------MRSAMIVGYGLHE--WSAFGSFDGLLS--NEENE-YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL  272 (462)
Q Consensus       205 ~~-------~~~~li~~~~~~~--~~a~~~~~~m~~--~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  272 (462)
                      ..       -||. -..+-..+  +.|.+.|..+.+  |+-.. |--+.......+...+|...+.......-       
T Consensus       490 e~~~~~lt~~YNl-arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-------  561 (1018)
T KOG2002|consen  490 EGKSTNLTLKYNL-ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-------  561 (1018)
T ss_pred             ccccchhHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-------
Confidence            21       1221 22222222  777788888877  55433 22232222344667777777777665432       


Q ss_pred             HHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh------------cCC
Q 036356          273 ISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK------------CGS  340 (462)
Q Consensus       273 ~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~------------~g~  340 (462)
                                .+...++-+-..+.+...+..|..-|...+.    +....+|++..-+|.+.|..            .+.
T Consensus       562 ----------~np~arsl~G~~~l~k~~~~~a~k~f~~i~~----~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~  627 (1018)
T KOG2002|consen  562 ----------SNPNARSLLGNLHLKKSEWKPAKKKFETILK----KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH  627 (1018)
T ss_pred             ----------CCcHHHHHHHHHHHhhhhhcccccHHHHHHh----hhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence                      3344444444455566666666665554321    12222454444444443321            123


Q ss_pred             cchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          341 VDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       341 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .++|+++|.+..+   .|...=|-+.-.++..|++..|..+|....+... -...+|--+...|..+|++..|+++|+..
T Consensus       628 ~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~  706 (1018)
T KOG2002|consen  628 QEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENC  706 (1018)
T ss_pred             HHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666665543   2444555566666666677777777766666422 12345556666666667777776666654


Q ss_pred             ----CCCCCHHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356          418 ----PIELRLSVRRALLSAWKIPMQQWENMLQTIRG  449 (462)
Q Consensus       418 ----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  449 (462)
                          .-..+..+...|.+++.+.|.+.++...+...
T Consensus       707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a  742 (1018)
T KOG2002|consen  707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA  742 (1018)
T ss_pred             HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence                22345566666666776666666666555443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.34  E-value=2.8e-10  Score=109.38  Aligned_cols=356  Identities=9%  Similarity=-0.027  Sum_probs=204.4

Q ss_pred             CCCCCCCCCCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHh
Q 036356            1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDG   77 (462)
Q Consensus         1 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~   77 (462)
                      |+..|+.||..||.++|.-||..|+.+.|- +|..|.-.....          +-..++.+   ..+.++.+.+      
T Consensus        16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv----------~e~vf~~lv~sh~~And~Enp------   78 (1088)
T KOG4318|consen   16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPV----------REGVFRGLVASHKEANDAENP------   78 (1088)
T ss_pred             HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccc----------cchhHHHHHhcccccccccCC------
Confidence            456799999999999999999999999888 888776554421          33344444   4555555555      


Q ss_pred             hcCCCcchHHHHHHhhcCccchhhHHHHHHH-HHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHH
Q 036356           78 LLSNEENEYGTALDCSCDLEFLEQGKIVHGF-MIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKL  156 (462)
Q Consensus        78 m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  156 (462)
                       ..|...+|..|+.+|.+.||+.. .+..++ |..                            ++..+...|.-..-..+
T Consensus        79 -kep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~----------------------------i~~sfs~~Gvgs~e~~f  128 (1088)
T KOG4318|consen   79 -KEPLADTYTNLLKAYRIHGDLIL-FEVVEQDLES----------------------------INQSFSDHGVGSPERWF  128 (1088)
T ss_pred             -CCCchhHHHHHHHHHHhccchHH-HHHHHHHHHH----------------------------HHhhhhhhccCcHHHHH
Confidence             24666777777777777777665 222222 221                            22233444444444444


Q ss_pred             HHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCC--CcchHHHHHHHHHhCc---hHHHHHHHhhhc
Q 036356          157 FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK--DVVMRSAMIVGYGLHE---WSAFGSFDGLLS  231 (462)
Q Consensus       157 ~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~---~~a~~~~~~m~~  231 (462)
                      +..+    -...+.-||..+   .+....-.|-++.+.+++..++..  +. +.-..++-+....   ++-...-+....
T Consensus       129 l~k~----~c~p~~lpda~n---~illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e  200 (1088)
T KOG4318|consen  129 LMKI----HCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE  200 (1088)
T ss_pred             Hhhc----ccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhc
Confidence            4332    123334444433   334445556677777777666531  11 1111233333333   444444444444


Q ss_pred             -CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhH
Q 036356          232 -NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK  310 (462)
Q Consensus       232 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  310 (462)
                       |+..+|..++.+..-.|+.+.|..++.+|.+.|++.                +..-|-.++-+   .+...-++.++.-
T Consensus       201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi----------------r~HyFwpLl~g---~~~~q~~e~vlrg  261 (1088)
T KOG4318|consen  201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI----------------RAHYFWPLLLG---INAAQVFEFVLRG  261 (1088)
T ss_pred             CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc----------------ccccchhhhhc---CccchHHHHHHHH
Confidence             999999999999999999999999999999999963                33333444433   6666666666666


Q ss_pred             HHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChH--HHHHHHHHHHH---C
Q 036356          311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE--EGWVLFHHIRK---H  385 (462)
Q Consensus       311 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~---~  385 (462)
                           |...|+.|+..|+..-+-.+.+.|....+....+.-.-.....+..+.++.....+.+  .+.-+.....+   .
T Consensus       262 -----mqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLl  336 (1088)
T KOG4318|consen  262 -----MQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLL  336 (1088)
T ss_pred             -----HHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHh
Confidence                 8899999999999888877777555222221111100011222333333322222221  11122222222   2


Q ss_pred             CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHcc
Q 036356          386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-----PIEL-RLSVRRALLSAWKIP  436 (462)
Q Consensus       386 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p-~~~~~~~l~~~~~~~  436 (462)
                      |+.-...+|...+. ...+|+-++..++...+     ...+ +.-.|..++..|.+.
T Consensus       337 g~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr  392 (1088)
T KOG4318|consen  337 GTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR  392 (1088)
T ss_pred             ccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence            55444444444333 33478888998888887     2333 233566666666544

>TIGR00540 hemY_coli hemY protein

Probab=99.34  E-value=5.6e-10  Score=105.81  Aligned_cols=287  Identities=12%  Similarity=-0.057  Sum_probs=195.2

Q ss_pred             hccCCChhhHHHHHHhh--cCCCcc-hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee--e
Q 036356           62 HLWSRTEWSAFGSFDGL--LSNEEN-EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT--L  136 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~--~  136 (462)
                      ....|+++.|.+.+...  ..|+.. .+-....+..+.|+.+.|.+.+.+..+..                  |+..  .
T Consensus        94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~------------------p~~~l~~  155 (409)
T TIGR00540        94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA------------------GNDNILV  155 (409)
T ss_pred             HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CcCchHH
Confidence            77889999999999888  455533 34444667778899999999999987653                  4443  3


Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCc---chHHHHHH
Q 036356          137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV---VMRSAMIV  213 (462)
Q Consensus       137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~li~  213 (462)
                      .-.....+...|+++.|.+.++.+     .+.. +-+..+...+...+...|++++|.+.++...+.+.   ..+..+-.
T Consensus       156 ~~~~a~l~l~~~~~~~Al~~l~~l-----~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~  229 (409)
T TIGR00540       156 EIARTRILLAQNELHAARHGVDKL-----LEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ  229 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH-----HHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            334577788899999999999997     3333 34567788899999999999999999888775422   11111000


Q ss_pred             HHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHH
Q 036356          214 GYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS  293 (462)
Q Consensus       214 ~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~  293 (462)
                                           ..+...    ...+..+.+...+..+.+.....             .+.+...+..+..
T Consensus       230 ---------------------~a~~~~----l~~~~~~~~~~~L~~~~~~~p~~-------------~~~~~~l~~~~a~  271 (409)
T TIGR00540       230 ---------------------KAEIGL----LDEAMADEGIDGLLNWWKNQPRH-------------RRHNIALKIALAE  271 (409)
T ss_pred             ---------------------HHHHHH----HHHHHHhcCHHHHHHHHHHCCHH-------------HhCCHHHHHHHHH
Confidence                                 001111    11122223333444444332100             0137888899999


Q ss_pred             HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHH-HHHHHHH--HhcCCcchHHHHhccCCC--CC-c--cchHHHHHH
Q 036356          294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN-TVLIDMY--AKCGSVDLAPMFFDRTLD--KD-V--VMRSAMTVG  365 (462)
Q Consensus       294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~-~~li~~~--~~~g~~~~A~~~~~~~~~--~~-~--~~~~~li~~  365 (462)
                      .+...|+.++|.+.+.+.+     +  ..|+.... ..++..+  ...++.+.+.+.++...+  |+ .  ....++...
T Consensus       272 ~l~~~g~~~~A~~~l~~~l-----~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l  344 (409)
T TIGR00540       272 HLIDCDDHDSAQEIIFDGL-----K--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQL  344 (409)
T ss_pred             HHHHCCChHHHHHHHHHHH-----h--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence            9999999999999999843     2  23333210 0133333  335667778887776652  43 3  455688999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       366 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus       345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       345 LMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999995444347899999999999999999999999999874

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.33  E-value=6.3e-10  Score=107.37  Aligned_cols=320  Identities=13%  Similarity=0.039  Sum_probs=235.9

Q ss_pred             hhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCC
Q 036356           92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR  171 (462)
Q Consensus        92 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  171 (462)
                      .+...|+++.|..++.+.++..+                 .+...|-+|...|-..|+.+++...+-.      ...-.+
T Consensus       148 ~lfarg~~eeA~~i~~EvIkqdp-----------------~~~~ay~tL~~IyEqrGd~eK~l~~~ll------AAHL~p  204 (895)
T KOG2076|consen  148 NLFARGDLEEAEEILMEVIKQDP-----------------RNPIAYYTLGEIYEQRGDIEKALNFWLL------AAHLNP  204 (895)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCc-----------------cchhhHHHHHHHHHHcccHHHHHHHHHH------HHhcCC
Confidence            33344999999999999999876                 7888999999999999999999988744      233344


Q ss_pred             CCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHH---HHHHHhCc--hHHHHHHHhhhc--C------CcchHH
Q 036356          172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM---IVGYGLHE--WSAFGSFDGLLS--N------EENEYG  238 (462)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~l---i~~~~~~~--~~a~~~~~~m~~--~------~~~~~~  238 (462)
                      -|...|-.+.....+.|+++.|.-.|.+..+.++..|-.+   ...|-+.|  ..|+.-|.++..  |      ...+--
T Consensus       205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~  284 (895)
T KOG2076|consen  205 KDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR  284 (895)
T ss_pred             CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence            4678899999999999999999999999887555555544   35677778  899999999988  4      222334


Q ss_pred             HHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHH---
Q 036356          239 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY---  315 (462)
Q Consensus       239 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---  315 (462)
                      .++..+...++-+.|.+.++.....+-.               ..+...++.++..|.+..+++.|.....+..+..   
T Consensus       285 ~~~~~~~~~~~~e~a~~~le~~~s~~~~---------------~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~  349 (895)
T KOG2076|consen  285 RVAHYFITHNERERAAKALEGALSKEKD---------------EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK  349 (895)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhhccc---------------cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCC
Confidence            4566677777778899888888774332               3566778888888999999999988876633200   


Q ss_pred             -------------------HHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC------CCccchHHHHHHHHhcC
Q 036356          316 -------------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD------KDVVMRSAMTVGYGLHG  370 (462)
Q Consensus       316 -------------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~  370 (462)
                                         -...+..++..++ -+.-++.+....+....+.....+      -+...|.-+..+|...|
T Consensus       350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~  428 (895)
T KOG2076|consen  350 DDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG  428 (895)
T ss_pred             ChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc
Confidence                               0012233333331 122233344444444444443332      24557888999999999


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHccCChHHHHHHHHh
Q 036356          371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS-VRRALLSAWKIPMQQWENMLQTIR  448 (462)
Q Consensus       371 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~  448 (462)
                      ++.+|..+|..+......-+...|--+...|-..|.+++|.+.++.. ...|+.. .-.+|...+.+.|+.++|++.+.+
T Consensus       429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~  508 (895)
T KOG2076|consen  429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ  508 (895)
T ss_pred             cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence            99999999999998644445778999999999999999999999998 5566544 556777888889999999999887


Q ss_pred             hh
Q 036356          449 GI  450 (462)
Q Consensus       449 ~~  450 (462)
                      +.
T Consensus       509 ~~  510 (895)
T KOG2076|consen  509 II  510 (895)
T ss_pred             cc
Confidence            65

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.30  E-value=1.3e-09  Score=93.25  Aligned_cols=286  Identities=13%  Similarity=0.093  Sum_probs=190.4

Q ss_pred             hccCCChhhHHHHHHhhcCC---CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee---
Q 036356           62 HLWSRTEWSAFGSFDGLLSN---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT---  135 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~---  135 (462)
                      +.-+.++++|+++|-+|...   +..+--+|.+.+.+.|.++.|+.+++.+.++                   ||..   
T Consensus        45 fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-------------------pdlT~~q  105 (389)
T COG2956          45 FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-------------------PDLTFEQ  105 (389)
T ss_pred             HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-------------------CCCchHH
Confidence            77778999999999999333   3445567888899999999999999998874                   4432   


Q ss_pred             ---eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHH
Q 036356          136 ---LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI  212 (462)
Q Consensus       136 ---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li  212 (462)
                         ..-.|..-|...|-+|.|..+|..+     ...+ ..-......|+..|-...+|++|+++-+++.+-+..+|+.-|
T Consensus       106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L-----~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI  179 (389)
T COG2956         106 RLLALQQLGRDYMAAGLLDRAEDIFNQL-----VDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI  179 (389)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHH-----hcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH
Confidence               2345667789999999999999997     3222 222445677999999999999999999988877777777766


Q ss_pred             HHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHH
Q 036356          213 VGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI  292 (462)
Q Consensus       213 ~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li  292 (462)
                      .-|                     |..+...+.-..+++.|..++....+...                 ..+..=-.+-
T Consensus       180 Aqf---------------------yCELAq~~~~~~~~d~A~~~l~kAlqa~~-----------------~cvRAsi~lG  221 (389)
T COG2956         180 AQF---------------------YCELAQQALASSDVDRARELLKKALQADK-----------------KCVRASIILG  221 (389)
T ss_pred             HHH---------------------HHHHHHHHhhhhhHHHHHHHHHHHHhhCc-----------------cceehhhhhh
Confidence            544                     45555556666677777777777766531                 2233333344


Q ss_pred             HHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--CCccchHHHHHHHHhcC
Q 036356          293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMTVGYGLHG  370 (462)
Q Consensus       293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~  370 (462)
                      +.+...|+++.|.+.++.     ....+..--..+...|..+|...|+.++....+.++.+  ++...-..+...-....
T Consensus       222 ~v~~~~g~y~~AV~~~e~-----v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~  296 (389)
T COG2956         222 RVELAKGDYQKAVEALER-----VLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQE  296 (389)
T ss_pred             HHHHhccchHHHHHHHHH-----HHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhh
Confidence            566777777777777777     44445444456666777777777777777777766653  33333333333333333


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 036356          371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA---GYSNHAFKFIMNM  417 (462)
Q Consensus       371 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m  417 (462)
                      -.+.|...+.+-..  -.|+...+..|++.-...   |.+.+-+.+++.|
T Consensus       297 G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m  344 (389)
T COG2956         297 GIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM  344 (389)
T ss_pred             ChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence            34555555555444  467777777777654432   3344445555555

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=1.7e-10  Score=107.80  Aligned_cols=268  Identities=16%  Similarity=0.098  Sum_probs=207.2

Q ss_pred             ChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC------CCcchHHHHHHHHHhCc---
Q 036356          149 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD------KDVVMRSAMIVGYGLHE---  219 (462)
Q Consensus       149 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------~~~~~~~~li~~~~~~~---  219 (462)
                      +..+|...|...      ...+.-+..+...+.++|...+++++|+++|+.+.+      .+...|++.+..+-+.-   
T Consensus       334 ~~~~A~~~~~kl------p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls  407 (638)
T KOG1126|consen  334 NCREALNLFEKL------PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS  407 (638)
T ss_pred             HHHHHHHHHHhh------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH
Confidence            467788888774      233333345667788999999999999999998874      36677888775543322   


Q ss_pred             hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCC-CHhHHHHHHHHHHcC
Q 036356          220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-NVTLWNAMISGYAKN  298 (462)
Q Consensus       220 ~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~li~~~~~~  298 (462)
                      --|..+.+.. +....+|.++.++|.-.++.+.|++.|+..++..                  | ...+|+-+-.-+...
T Consensus       408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld------------------p~faYayTLlGhE~~~~  468 (638)
T KOG1126|consen  408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD------------------PRFAYAYTLLGHESIAT  468 (638)
T ss_pred             HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC------------------CccchhhhhcCChhhhh
Confidence            2222222222 1457899999999999999999999999998753                  4 778888888888888


Q ss_pred             CChhHHHHHhhHHHHHHHHhhCCCCchhHHHH---HHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCCh
Q 036356          299 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV---LIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLG  372 (462)
Q Consensus       299 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~  372 (462)
                      ..+|.|...|+.         .+..|+..||+   +.-.|.+.++++.|+--|++..+   .+.+....+...+.+.|+.
T Consensus       469 ee~d~a~~~fr~---------Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~  539 (638)
T KOG1126|consen  469 EEFDKAMKSFRK---------ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK  539 (638)
T ss_pred             HHHHhHHHHHHh---------hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh
Confidence            999999999987         34556656655   45679999999999999998875   4667777888889999999


Q ss_pred             HHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356          373 EEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLSAWKIPMQQWENMLQTIRG  449 (462)
Q Consensus       373 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~  449 (462)
                      ++|++++++...  +.|. ...--.-...+...+++++|+..++++ .+.|+ ...+..+.+.|.+.|+.+.|+..+--+
T Consensus       540 d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A  617 (638)
T KOG1126|consen  540 DKALQLYEKAIH--LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWA  617 (638)
T ss_pred             hHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence            999999999998  5564 344445566777889999999999999 55564 567888999999999999999888766


Q ss_pred             hhc
Q 036356          450 IDE  452 (462)
Q Consensus       450 ~~~  452 (462)
                      .+-
T Consensus       618 ~~l  620 (638)
T KOG1126|consen  618 LDL  620 (638)
T ss_pred             hcC
Confidence            544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.26  E-value=8.6e-10  Score=98.44  Aligned_cols=378  Identities=13%  Similarity=0.017  Sum_probs=240.1

Q ss_pred             hccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceee--hhh--hccCCChhhHHHHHHhh--cCCCc------chHH
Q 036356           20 CVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFL--DLY--HLWSRTEWSAFGSFDGL--LSNEE------NEYG   87 (462)
Q Consensus        20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~A~~~~~~m--~~~~~------~~~~   87 (462)
                      |.......+|+..++.+++...-          |+....  |.-  +.+.+.+.+|+++++..  ..|+.      ...+
T Consensus       211 y~~ndm~~ealntyeiivknkmf----------~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~  280 (840)
T KOG2003|consen  211 YEANDMTAEALNTYEIIVKNKMF----------PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN  280 (840)
T ss_pred             hhhhHHHHHHhhhhhhhhccccc----------CCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence            33444566777777777766543          343322  222  88889999999998866  33322      2345


Q ss_pred             HHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh------
Q 036356           88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM------  161 (462)
Q Consensus        88 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~------  161 (462)
                      .+-..+.+.|.++.|..-|++..+..                  ||..+--.|+-++..-|+-++..+.|.+|.      
T Consensus       281 nigvtfiq~gqy~dainsfdh~m~~~------------------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~  342 (840)
T KOG2003|consen  281 NIGVTFIQAGQYDDAINSFDHCMEEA------------------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEI  342 (840)
T ss_pred             hcCeeEEecccchhhHhhHHHHHHhC------------------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCC
Confidence            55557789999999999999988764                  344332223333333455555555555543      


Q ss_pred             -------------------------------------------hhhhhhcCCCCCchH-------------HH-------
Q 036356          162 -------------------------------------------DYYIGKSEYRNNVIV-------------NT-------  178 (462)
Q Consensus       162 -------------------------------------------~~~~~~~~~~~~~~~-------------~~-------  178 (462)
                                                                 ...+...-+.||...             |.       
T Consensus       343 dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dle  422 (840)
T KOG2003|consen  343 DDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLE  422 (840)
T ss_pred             CcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhh
Confidence                                                       000011112222110             00       


Q ss_pred             -HHHHHHHhcCCcccHHHHhhccCCCCcchHHHHH-----HHHHhCc---hHHHHHHHhhhcCCcchHHHH-----HHhh
Q 036356          179 -VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI-----VGYGLHE---WSAFGSFDGLLSNEENEYGTA-----LDCS  244 (462)
Q Consensus       179 -~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li-----~~~~~~~---~~a~~~~~~m~~~~~~~~~~l-----l~~~  244 (462)
                       .-..-|.+.|+++.|++++.-..+.|..+-++-.     --|.+.|   ..|...-+....  ..-||..     -+..
T Consensus       423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln--~dryn~~a~~nkgn~~  500 (840)
T KOG2003|consen  423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN--IDRYNAAALTNKGNIA  500 (840)
T ss_pred             hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc--ccccCHHHhhcCCcee
Confidence             0112366788888888888777665544432221     1223333   445554444433  2223222     2233


Q ss_pred             cCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC-CC
Q 036356          245 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RN  323 (462)
Q Consensus       245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p  323 (462)
                      .-.|+++.|...|.+.+...-.                .....|| +--.+-..|++++|++.|-+.       +++ ..
T Consensus       501 f~ngd~dka~~~ykeal~ndas----------------c~ealfn-iglt~e~~~~ldeald~f~kl-------h~il~n  556 (840)
T KOG2003|consen  501 FANGDLDKAAEFYKEALNNDAS----------------CTEALFN-IGLTAEALGNLDEALDCFLKL-------HAILLN  556 (840)
T ss_pred             eecCcHHHHHHHHHHHHcCchH----------------HHHHHHH-hcccHHHhcCHHHHHHHHHHH-------HHHHHh
Confidence            4678999999999998864321                1111222 223466789999999999762       222 33


Q ss_pred             chhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHH
Q 036356          324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVD  399 (462)
Q Consensus       324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~  399 (462)
                      +..+...+...|....+...|++++-...   ..|....+.|...|-+.|+-..|.+...+-.+  ..| +..+..=|..
T Consensus       557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~a  634 (840)
T KOG2003|consen  557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAA  634 (840)
T ss_pred             hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHH
Confidence            56666777888988999999999997665   35778889999999999999999887766554  555 5778888888


Q ss_pred             HHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH-HccCChHHHHHHHHhhhhcCC
Q 036356          400 LLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAW-KIPMQQWENMLQTIRGIDEGE  454 (462)
Q Consensus       400 ~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~  454 (462)
                      -|....-+++|+..|++. -+.|+..-|..++..| .+.|++..|+..+. -..+.+
T Consensus       635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk-~~hrkf  690 (840)
T KOG2003|consen  635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK-DIHRKF  690 (840)
T ss_pred             HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH-HHHHhC
Confidence            889999999999999998 7889999999877655 56699999985554 344444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.24  E-value=5.3e-09  Score=92.30  Aligned_cols=288  Identities=11%  Similarity=-0.003  Sum_probs=185.9

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      -.-.|+|.+|+++..+-   .......|.....+.-+.||.+.+-.++.+..+...                .++...+-
T Consensus        94 ~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~----------------~~~l~v~l  157 (400)
T COG3071          94 KLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG----------------DDTLAVEL  157 (400)
T ss_pred             HHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC----------------CchHHHHH
Confidence            44567888888777766   233344566666667777888888888888777633                35556666


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhC
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH  218 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~  218 (462)
                      +........|+.+.|..-.++.     .+.+ +-.+.+.....++|.+.|++..+..++.++.+.+..+-.-+.      
T Consensus       158 trarlll~~~d~~aA~~~v~~l-----l~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~------  225 (400)
T COG3071         158 TRARLLLNRRDYPAARENVDQL-----LEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA------  225 (400)
T ss_pred             HHHHHHHhCCCchhHHHHHHHH-----HHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH------
Confidence            6667777788888887777775     2222 334566677788888888888888887777654332211100      


Q ss_pred             chHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcC
Q 036356          219 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKN  298 (462)
Q Consensus       219 ~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~  298 (462)
                            -      --..+|..++.-....+..+.-...++..-+.                 .+.+...-.+++.-+.+.
T Consensus       226 ------~------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-----------------lr~~p~l~~~~a~~li~l  276 (400)
T COG3071         226 ------R------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-----------------LRNDPELVVAYAERLIRL  276 (400)
T ss_pred             ------H------HHHHHHHHHHHHHhccccchHHHHHHHhccHH-----------------hhcChhHHHHHHHHHHHc
Confidence                  0      11235566666666666666555555554333                 134555666777778888


Q ss_pred             CChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHH
Q 036356          299 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEG  375 (462)
Q Consensus       299 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a  375 (462)
                      |+.++|.++..+     ..+.+..|+...    .-.+.+-++.+.-.+..++-.   ..+...+.+|...|.+.+.+.+|
T Consensus       277 ~~~~~A~~~i~~-----~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA  347 (400)
T COG3071         277 GDHDEAQEIIED-----ALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA  347 (400)
T ss_pred             CChHHHHHHHHH-----HHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH
Confidence            888888888877     445666666222    122334455544444444322   22445677788888888888888


Q ss_pred             HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          376 WVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       376 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      ...|+...+  ..|+..+|+.+..+|.+.|+.++|.+..++.
T Consensus       348 ~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~  387 (400)
T COG3071         348 SEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREA  387 (400)
T ss_pred             HHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence            888887776  7788888888888888888888888877764

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=3.4e-09  Score=95.00  Aligned_cols=204  Identities=12%  Similarity=0.027  Sum_probs=119.1

Q ss_pred             chHHHHHHHHHhCc--hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhc
Q 036356          206 VMRSAMIVGYGLHE--WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR  280 (462)
Q Consensus       206 ~~~~~li~~~~~~~--~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  280 (462)
                      .|+.++..-|+-.+  ++|...|++..+  |. ...|+.+.+-|..+.+...|..-|...++-.                
T Consensus       331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~----------------  394 (559)
T KOG1155|consen  331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN----------------  394 (559)
T ss_pred             cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC----------------
Confidence            34444444444444  677777777666  33 3445555566677777777777777666643                


Q ss_pred             CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCc
Q 036356          281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDV  356 (462)
Q Consensus       281 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~  356 (462)
                       +.|-..|-.+-.+|.-.+.+.-|+-.|++.       ..++| |...|.+|.+.|.+.++.++|++.|.....   .+.
T Consensus       395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA-------~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~  466 (559)
T KOG1155|consen  395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKA-------LELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG  466 (559)
T ss_pred             -chhHHHHhhhhHHHHHhcchHHHHHHHHHH-------HhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence             246667777777777777777777777662       33444 466677777777777777777777766542   334


Q ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 036356          357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR--HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRAL  429 (462)
Q Consensus       357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l  429 (462)
                      ..+..|.+.|-+.++.++|...+++..+.    |..-+  .....-|..-+.+.+++++|....... ...+...--+.|
T Consensus       467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~L  546 (559)
T KOG1155|consen  467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKAL  546 (559)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHH
Confidence            56667777777777777777666665542    22222  222233444556666666665544444 223333333444


Q ss_pred             HHHH
Q 036356          430 LSAW  433 (462)
Q Consensus       430 ~~~~  433 (462)
                      ++.+
T Consensus       547 lRei  550 (559)
T KOG1155|consen  547 LREI  550 (559)
T ss_pred             HHHH
Confidence            4433

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.20  E-value=8.8e-10  Score=106.00  Aligned_cols=257  Identities=15%  Similarity=0.118  Sum_probs=153.5

Q ss_pred             HHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHH
Q 036356          104 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM  183 (462)
Q Consensus       104 ~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~  183 (462)
                      .++..+...|+                .||.+||..+|.-|+..|+++.|- +|.-|     +-...+.+...|+.++.+
T Consensus        11 nfla~~e~~gi----------------~PnRvtyqsLiarYc~~gdieaat-if~fm-----~~ksLpv~e~vf~~lv~s   68 (1088)
T KOG4318|consen   11 NFLALHEISGI----------------LPNRVTYQSLIARYCTKGDIEAAT-IFPFM-----EIKSLPVREGVFRGLVAS   68 (1088)
T ss_pred             hHHHHHHHhcC----------------CCchhhHHHHHHHHcccCCCcccc-chhhh-----hcccccccchhHHHHHhc
Confidence            45677788888                999999999999999999999999 99998     677778889999999999


Q ss_pred             HHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc-hHHHHHHHh-h---hc------CCcchHHHHHHhhcCccchhh
Q 036356          184 YAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-WSAFGSFDG-L---LS------NEENEYGTALDCSCDLEFLEQ  252 (462)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~-~~a~~~~~~-m---~~------~~~~~~~~ll~~~~~~~~~~~  252 (462)
                      +...++.+.+.       .|...+|+.+..+|..+| -.+++.-++ +   ..      .....-..++..-|..+-...
T Consensus        69 h~~And~Enpk-------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd  141 (1088)
T KOG4318|consen   69 HKEANDAENPK-------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD  141 (1088)
T ss_pred             ccccccccCCC-------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchh
Confidence            99999998886       788889999999999998 333333333 1   11      011111112221122222222


Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHH---HHHHHHcCCChhHHHHHhhHHHHHHHHhhCC-CCchhHH
Q 036356          253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA---MISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RNNVIVN  328 (462)
Q Consensus       253 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~~~~~  328 (462)
                      |.......+-.|+      +.-++......|-..-++.   +++-....+  ...+++..      +.+... .|+..+|
T Consensus       142 a~n~illlv~egl------waqllkll~~~Pvsa~~~p~~vfLrqnv~~n--tpvekLl~------~cksl~e~~~s~~l  207 (1088)
T KOG4318|consen  142 AENAILLLVLEGL------WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDN--TPVEKLLN------MCKSLVEAPTSETL  207 (1088)
T ss_pred             HHHHHHHHHHHHH------HHHHHHHHhhCCcccccchHHHHHHHhccCC--chHHHHHH------HHHHhhcCCChHHH
Confidence            2222222221111      1111111000111111111   122111111  11122221      122222 4778888


Q ss_pred             HHHHHHHHhcCCcchHHHHhccCCCC----CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 036356          329 TVLIDMYAKCGSVDLAPMFFDRTLDK----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA  404 (462)
Q Consensus       329 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  404 (462)
                      .++++.-...|+++.|..++.+|.+.    +..-|-.|+-+   .++..-+..++.-|.+.|+.|+..|+...+..+.+.
T Consensus       208 ~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N  284 (1088)
T KOG4318|consen  208 HAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN  284 (1088)
T ss_pred             HHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence            88888888888888888888888753    22222233333   667777777788888888888888888777777775


Q ss_pred             CC
Q 036356          405 GY  406 (462)
Q Consensus       405 g~  406 (462)
                      |.
T Consensus       285 ~~  286 (1088)
T KOG4318|consen  285 GQ  286 (1088)
T ss_pred             hh
Confidence            55

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.18  E-value=1.2e-08  Score=99.46  Aligned_cols=361  Identities=13%  Similarity=0.035  Sum_probs=219.4

Q ss_pred             hccCCChhhHHHHHHhh--cC----CCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee
Q 036356           62 HLWSRTEWSAFGSFDGL--LS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT  135 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~  135 (462)
                      |...|++..++.+.+.+  ..    .-..+|--+.+++-..|++++|.+.|.+..+...                .--+.
T Consensus       280 fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~----------------d~~~l  343 (1018)
T KOG2002|consen  280 FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN----------------DNFVL  343 (1018)
T ss_pred             HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC----------------CCccc
Confidence            66667777777777766  11    1233466677777777777777777776665543                11133


Q ss_pred             eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcC----CcccHHHHhhccCCC---CcchH
Q 036356          136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG----SVDLAPMFFDRTLDK---DVVMR  208 (462)
Q Consensus       136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~---~~~~~  208 (462)
                      .+--|...+.+.|+++.+...|+..      -...+.+..+..+|-..|+..+    ..+.|..++.+...+   |...|
T Consensus       344 ~~~GlgQm~i~~~dle~s~~~fEkv------~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~  417 (1018)
T KOG2002|consen  344 PLVGLGQMYIKRGDLEESKFCFEKV------LKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAW  417 (1018)
T ss_pred             cccchhHHHHHhchHHHHHHHHHHH------HHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHH
Confidence            3445667778888888888888774      2333445566666666666654    445666666655543   44455


Q ss_pred             HHHHHHHHhCc-hHHHHHHHhhhc--------CCcchHHHHHHhhcCccchhhhHHHHHHHHHh---CCCcchH------
Q 036356          209 SAMIVGYGLHE-WSAFGSFDGLLS--------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKL---GLELESD------  270 (462)
Q Consensus       209 ~~li~~~~~~~-~~a~~~~~~m~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~------  270 (462)
                      -.+-..+.... ..++.+|.....        +-....|.+.......|+++.|...|......   ...+|..      
T Consensus       418 l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt  497 (1018)
T KOG2002|consen  418 LELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLT  497 (1018)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhH
Confidence            55555555555 333444443332        56667777877888888888888888887765   1222221      


Q ss_pred             -HHHHH--HHh-hcCCCCHhHHH-------HHHHHHHcC-------CChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHH
Q 036356          271 -LLISL--TAV-CRYQPNVTLWN-------AMISGYAKN-------GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI  332 (462)
Q Consensus       271 -~~~~l--~~~-~~~~~~~~~~~-------~li~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li  332 (462)
                       -||.-  .+. |....-...|.       ..|++|.+.       +...+|...+...+    .-  ..-++..+..+.
T Consensus       498 ~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l----~~--d~~np~arsl~G  571 (1018)
T KOG2002|consen  498 LKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDAL----NI--DSSNPNARSLLG  571 (1018)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHH----hc--ccCCcHHHHHHH
Confidence             11111  111 11011111121       123344433       45666777766632    12  233444555566


Q ss_pred             HHHHhcCCcchHHHHhccCCC-----CCccchHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCC-CHhHH
Q 036356          333 DMYAKCGSVDLAPMFFDRTLD-----KDVVMRSAMTVGYGL------------HGLGEEGWVLFHHIRKHGIEP-RHQHY  394 (462)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~g~~p-~~~~~  394 (462)
                      ..+.+..++..|.+-|+.+.+     +|..+.-+|...|..            .+..++|+++|.+..+  ..| |...-
T Consensus       572 ~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAA  649 (1018)
T KOG2002|consen  572 NLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAA  649 (1018)
T ss_pred             HHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhc
Confidence            677777778777775554432     344444444444432            2345788899988887  555 46667


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          395 ARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       395 ~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      +-+.-.++..|++.+|..+|...  ......-+|-.+...|..+|++-.|++.+..-+..
T Consensus       650 NGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk  709 (1018)
T KOG2002|consen  650 NGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK  709 (1018)
T ss_pred             cchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888899999999999999998  33345567999999999999999999777665444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.17  E-value=2.5e-08  Score=88.12  Aligned_cols=295  Identities=12%  Similarity=0.006  Sum_probs=202.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCch
Q 036356           96 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI  175 (462)
Q Consensus        96 ~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~  175 (462)
                      .|++.+|+++..+-.+.+.                 .....|-.-..+-...|+.+.+-+++.+.     .+..-.++..
T Consensus        97 eG~~~qAEkl~~rnae~~e-----------------~p~l~~l~aA~AA~qrgd~~~an~yL~ea-----ae~~~~~~l~  154 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGE-----------------QPVLAYLLAAEAAQQRGDEDRANRYLAEA-----AELAGDDTLA  154 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCc-----------------chHHHHHHHHHHHHhcccHHHHHHHHHHH-----hccCCCchHH
Confidence            4677777777766555543                 22233444445555667777777777764     3333344555


Q ss_pred             HHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHH
Q 036356          176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKI  255 (462)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~  255 (462)
                      .+-+..+.....||.+.|..-+++..+-.+                          -+.........+|.+.|++.....
T Consensus       155 v~ltrarlll~~~d~~aA~~~v~~ll~~~p--------------------------r~~~vlrLa~r~y~~~g~~~~ll~  208 (400)
T COG3071         155 VELTRARLLLNRRDYPAARENVDQLLEMTP--------------------------RHPEVLRLALRAYIRLGAWQALLA  208 (400)
T ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHhCc--------------------------CChHHHHHHHHHHHHhccHHHHHH
Confidence            666666667777777777666655442111                          234456677788889999999999


Q ss_pred             HHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHH
Q 036356          256 VHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY  335 (462)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~  335 (462)
                      +...+.+.|.-.++..-         .....+|+.+++-....+..+.-...+++.      ....+-++..-.+++.-+
T Consensus       209 ~l~~L~ka~~l~~~e~~---------~le~~a~~glL~q~~~~~~~~gL~~~W~~~------pr~lr~~p~l~~~~a~~l  273 (400)
T COG3071         209 ILPKLRKAGLLSDEEAA---------RLEQQAWEGLLQQARDDNGSEGLKTWWKNQ------PRKLRNDPELVVAYAERL  273 (400)
T ss_pred             HHHHHHHccCCChHHHH---------HHHHHHHHHHHHHHhccccchHHHHHHHhc------cHHhhcChhHHHHHHHHH
Confidence            99999999875332221         122446777777666666666645555542      233445566667788899


Q ss_pred             HhcCCcchHHHHhccCCC--CCccchHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCChHHHHH
Q 036356          336 AKCGSVDLAPMFFDRTLD--KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNHAFK  412 (462)
Q Consensus       336 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~  412 (462)
                      .++|+.++|.++.++..+  .|..  -.....+.+-++.+.-.+..++-.+. +-.|  ..+.+|...|.+.+.|.+|..
T Consensus       274 i~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~  349 (400)
T COG3071         274 IRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASE  349 (400)
T ss_pred             HHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHH
Confidence            999999999999887764  2333  33344566778888777777776653 4444  788899999999999999999


Q ss_pred             HHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcCCCCC
Q 036356          413 FIMNM-PIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTD  457 (462)
Q Consensus       413 ~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~pd  457 (462)
                      .|+.. ...|+..+|+.+..++.+.|+.++|-....+.+..-..|+
T Consensus       350 ~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         350 ALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             HHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence            99987 8899999999999999999999999877777664443333

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.15  E-value=1.8e-08  Score=86.46  Aligned_cols=282  Identities=14%  Similarity=0.090  Sum_probs=200.8

Q ss_pred             HhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHH-------HHHHHHHh
Q 036356          145 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS-------AMIVGYGL  217 (462)
Q Consensus       145 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~li~~~~~  217 (462)
                      .-+.+.++|++.|-+|     .+ +-+.+..+.-+|-+.|.+.|.+|.|+++-+.+.++...|++       .+-.-|..
T Consensus        46 LLs~Q~dKAvdlF~e~-----l~-~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~  119 (389)
T COG2956          46 LLSNQPDKAVDLFLEM-----LQ-EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA  119 (389)
T ss_pred             HhhcCcchHHHHHHHH-----Hh-cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence            3457899999999998     22 33334556667889999999999999999887754333443       34455777


Q ss_pred             Cc--hHHHHHHHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCC-HhHHHHH
Q 036356          218 HE--WSAFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN-VTLWNAM  291 (462)
Q Consensus       218 ~~--~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l  291 (462)
                      .|  +.|..+|..+..   --....-.|+..|-...+|++|..+-+.+.+.+-.+.             ... ...|.-+
T Consensus       120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~-------------~~eIAqfyCEL  186 (389)
T COG2956         120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY-------------RVEIAQFYCEL  186 (389)
T ss_pred             hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc-------------hhHHHHHHHHH
Confidence            77  999999999987   2345667789999999999999999999988775421             011 2346667


Q ss_pred             HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchh-HHHHHHHHHHhcCCcchHHHHhccCCCCCcc----chHHHHHHH
Q 036356          292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV----MRSAMTVGY  366 (462)
Q Consensus       292 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~  366 (462)
                      ...+....+.+.|..++.+.+.       ..|+.+ .--.+.+.+...|+++.|.+.|+...+.|..    +...|..+|
T Consensus       187 Aq~~~~~~~~d~A~~~l~kAlq-------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y  259 (389)
T COG2956         187 AQQALASSDVDRARELLKKALQ-------ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY  259 (389)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHh-------hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            7777778899999999988532       233322 2234557788899999999999998865443    456788999


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHcc---CChHHH
Q 036356          367 GLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKF-IMNMPIELRLSVRRALLSAWKIP---MQQWEN  442 (462)
Q Consensus       367 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~l~~~~~~~---~~~~~a  442 (462)
                      ...|+.++...++.++.+.  .+....-..+-+.-....-.+.|... .+.+.-+|+...+..|+..-...   |...+.
T Consensus       260 ~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~s  337 (389)
T COG2956         260 AQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKES  337 (389)
T ss_pred             HHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhh
Confidence            9999999999999999984  44444444444444444444555554 44557789999999999876554   335566


Q ss_pred             HHHHHhhhhcCC
Q 036356          443 MLQTIRGIDEGE  454 (462)
Q Consensus       443 ~~~~~~~~~~~~  454 (462)
                      +..+..|..+.+
T Consensus       338 L~~lr~mvge~l  349 (389)
T COG2956         338 LDLLRDMVGEQL  349 (389)
T ss_pred             HHHHHHHHHHHH
Confidence            666777765543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.8e-08  Score=90.47  Aligned_cols=273  Identities=15%  Similarity=0.116  Sum_probs=209.3

Q ss_pred             HHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCC------CcchHHHHHH
Q 036356          140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK------DVVMRSAMIV  213 (462)
Q Consensus       140 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~~~~li~  213 (462)
                      +..++-...+.+++.+-.+..     ...|++.+...-+-...+.-...|+++|+.+|+++.+.      |..+|+.++ 
T Consensus       233 ~~~a~~el~q~~e~~~k~e~l-----~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L-  306 (559)
T KOG1155|consen  233 LKKAYQELHQHEEALQKKERL-----SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL-  306 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH-
Confidence            345566667888888877776     67777777766666677777889999999999998853      445666655 


Q ss_pred             HHHhCchHHHHHHHhhhc----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHH
Q 036356          214 GYGLHEWSAFGSFDGLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN  289 (462)
Q Consensus       214 ~~~~~~~~a~~~~~~m~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  289 (462)
                       |.++....+..+..-..    -...|+..+.+-|+-.++.++|...|+..++.+.                 .....|+
T Consensus       307 -Yv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-----------------~~~~aWT  368 (559)
T KOG1155|consen  307 -YVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-----------------KYLSAWT  368 (559)
T ss_pred             -HHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-----------------chhHHHH
Confidence             44444222222222211    5567888888889999999999999999998752                 4567788


Q ss_pred             HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHH
Q 036356          290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVG  365 (462)
Q Consensus       290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~  365 (462)
                      -|-.-|...++...|.+-+++.++       +.| |-..|-.|.++|.-.+...-|.-.|++..   ..|...|.+|..+
T Consensus       369 LmGHEyvEmKNt~AAi~sYRrAvd-------i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~C  441 (559)
T KOG1155|consen  369 LMGHEYVEMKNTHAAIESYRRAVD-------INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGEC  441 (559)
T ss_pred             HhhHHHHHhcccHHHHHHHHHHHh-------cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            888999999999999999998542       333 66788999999999999999999999876   3588999999999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCC-CHHHHHHHHHHHHcc
Q 036356          366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-------P-IEL-RLSVRRALLSAWKIP  436 (462)
Q Consensus       366 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p-~~~~~~~l~~~~~~~  436 (462)
                      |.+.++.++|.+.|......|-. +...|..|.+.|-+.++.++|...+++.       + +.| .....-.|..-+.+.
T Consensus       442 Y~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~  520 (559)
T KOG1155|consen  442 YEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKM  520 (559)
T ss_pred             HHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhh
Confidence            99999999999999999985432 5688999999999999999999988765       3 223 222333466677778


Q ss_pred             CChHHHHH
Q 036356          437 MQQWENML  444 (462)
Q Consensus       437 ~~~~~a~~  444 (462)
                      +++++|-.
T Consensus       521 ~~~~~As~  528 (559)
T KOG1155|consen  521 KDFDEASY  528 (559)
T ss_pred             cchHHHHH
Confidence            88888764

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.13  E-value=4.8e-08  Score=91.44  Aligned_cols=382  Identities=9%  Similarity=-0.058  Sum_probs=234.0

Q ss_pred             CCCCCCCCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh-
Q 036356            3 VAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL-   78 (462)
Q Consensus         3 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m-   78 (462)
                      ..|+..|...|-.=-..|-+.|.+..+++|...++..|++.        .---.+|+.-   |.+.+.++-|..+|... 
T Consensus       472 ~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe--------ed~~~tw~~da~~~~k~~~~~carAVya~al  543 (913)
T KOG0495|consen  472 ANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE--------EDRKSTWLDDAQSCEKRPAIECARAVYAHAL  543 (913)
T ss_pred             hcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc--------chhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence            45666677777777777878888888888888888888753        1112355544   66777777777777766 


Q ss_pred             --cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHH
Q 036356           79 --LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKL  156 (462)
Q Consensus        79 --~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  156 (462)
                        .+.+...|..+...--..|..+....++++....-+                 .....|-....-+..+|+...|..+
T Consensus       544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-----------------kae~lwlM~ake~w~agdv~~ar~i  606 (913)
T KOG0495|consen  544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-----------------KAEILWLMYAKEKWKAGDVPAARVI  606 (913)
T ss_pred             hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-----------------cchhHHHHHHHHHHhcCCcHHHHHH
Confidence              455566677776666667777777778777776643                 3444555555666777787777777


Q ss_pred             HHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--CCcchHHHHHHHHHhCc--hHHHHHHHhhhc-
Q 036356          157 FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMIVGYGLHE--WSAFGSFDGLLS-  231 (462)
Q Consensus       157 ~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~--~~a~~~~~~m~~-  231 (462)
                      +.+.     .+. .+.+..+|-.-+..-....+++.|..+|.+...  ++...|.--+..-.-.+  ++|.+++++-.+ 
T Consensus       607 l~~a-----f~~-~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~  680 (913)
T KOG0495|consen  607 LDQA-----FEA-NPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS  680 (913)
T ss_pred             HHHH-----HHh-CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence            7764     222 222566777777777777777777777776553  34444433222222222  777777776666 


Q ss_pred             -CCcc-hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhh
Q 036356          232 -NEEN-EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP  309 (462)
Q Consensus       232 -~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  309 (462)
                       |+-. .|-.+-..+-+.++++.|...|..-.+.                 .+.....|-.+.+.=-+.|++-+|..+|+
T Consensus       681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-----------------cP~~ipLWllLakleEk~~~~~rAR~ild  743 (913)
T KOG0495|consen  681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-----------------CPNSIPLWLLLAKLEEKDGQLVRARSILD  743 (913)
T ss_pred             CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-----------------CCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence             5533 3444445556666666666666543332                 11234456666666666667777777776


Q ss_pred             HHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036356          310 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG  386 (462)
Q Consensus       310 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  386 (462)
                      +.     .- .-+-+...|-..|++=.+.|..+.|..+..+..+   .+...|..-|....+.++-.+....+++     
T Consensus       744 ra-----rl-kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk-----  812 (913)
T KOG0495|consen  744 RA-----RL-KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----  812 (913)
T ss_pred             HH-----Hh-cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh-----
Confidence            62     11 2233566677777777777777777766655542   2444565555555555554443333333     


Q ss_pred             CCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHccCChHHHH
Q 036356          387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS-VRRALLSAWKIPMQQWENM  443 (462)
Q Consensus       387 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~~~~~~~~a~  443 (462)
                      +.-|.+..-.+...|....++++|.+.|.+. ...||.- +|..+...+.+.|.-++-.
T Consensus       813 ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~k  871 (913)
T KOG0495|consen  813 CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQK  871 (913)
T ss_pred             ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHH
Confidence            3345566666666777777777777777776 5555433 6667777777777654444

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.07  E-value=7.6e-07  Score=80.56  Aligned_cols=358  Identities=10%  Similarity=0.011  Sum_probs=199.3

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      -..++++..|..+|+..   ...+...|-..+.+=.+.+.+..|..++++.+..=+                ..|. .|-
T Consensus        83 Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP----------------RVdq-lWy  145 (677)
T KOG1915|consen   83 EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP----------------RVDQ-LWY  145 (677)
T ss_pred             HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc----------------hHHH-HHH
Confidence            34456677888888888   445566777778888888888899999888887643                1222 222


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC--CCCcchHHHHHHHHH
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMIVGYG  216 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~  216 (462)
                      --+..--..|++..|.++|+..       ....|+...|++.|+.=.+...++.|..++++..  .|++.+|--..+-=.
T Consensus       146 KY~ymEE~LgNi~gaRqiferW-------~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~  218 (677)
T KOG1915|consen  146 KYIYMEEMLGNIAGARQIFERW-------MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEE  218 (677)
T ss_pred             HHHHHHHHhcccHHHHHHHHHH-------HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHH
Confidence            2333334456666666666664       2356666666666666666666666666666543  466665555544444


Q ss_pred             hCc--hHHHHHHHhhhc--CCcchHHHHHHhh----cCccchhhhHHHHHHHHHhCCCc-chHHHHHHHHh---hc----
Q 036356          217 LHE--WSAFGSFDGLLS--NEENEYGTALDCS----CDLEFLEQGKIVHGFMIKLGLEL-ESDLLISLTAV---CR----  280 (462)
Q Consensus       217 ~~~--~~a~~~~~~m~~--~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~---~~----  280 (462)
                      ++|  ..|..+|+....  .|...-..+..++    .+...++.|.-+|...+.+=... ....|...+..   +|    
T Consensus       219 k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~g  298 (677)
T KOG1915|consen  219 KHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEG  298 (677)
T ss_pred             hcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhh
Confidence            444  555555555444  2222222222222    23444555555555544431111 01222222222   22    


Q ss_pred             -------------------CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC------------------
Q 036356          281 -------------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN------------------  323 (462)
Q Consensus       281 -------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p------------------  323 (462)
                                         .+-|-.+|--.++.--..|+.+...++|++.+      .+++|                  
T Consensus       299 IEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAI------anvpp~~ekr~W~RYIYLWinYa  372 (677)
T KOG1915|consen  299 IEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAI------ANVPPASEKRYWRRYIYLWINYA  372 (677)
T ss_pred             hHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH------ccCCchhHHHHHHHHHHHHHHHH
Confidence                               23355556666666666677777777765532      12222                  


Q ss_pred             --------------------------chhHHHHHHHHH----HhcCCcchHHHHhccCC--CCCccchHHHHHHHHhcCC
Q 036356          324 --------------------------NVIVNTVLIDMY----AKCGSVDLAPMFFDRTL--DKDVVMRSAMTVGYGLHGL  371 (462)
Q Consensus       324 --------------------------~~~~~~~li~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~  371 (462)
                                                ...||..+=-.|    .++.++..|.+++....  -|-..++...|..-.+.+.
T Consensus       373 lyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~e  452 (677)
T KOG1915|consen  373 LYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLRE  452 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhh
Confidence                                      122222222222    23444555555554443  2555566666666666677


Q ss_pred             hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHccCChHHHHHHH
Q 036356          372 GEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNMPIEL----RLSVRRALLSAWKIPMQQWENMLQT  446 (462)
Q Consensus       372 ~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~  446 (462)
                      ++.+..++++..+  ..|. ..+|.-....=...|+++.|..+|+-.--+|    -...|.+.+..=...|.++.|..++
T Consensus       453 fDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY  530 (677)
T KOG1915|consen  453 FDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY  530 (677)
T ss_pred             HHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence            7777777777776  6664 5566666666666777777777777662122    3446666666666677777776666


Q ss_pred             Hhhhh
Q 036356          447 IRGID  451 (462)
Q Consensus       447 ~~~~~  451 (462)
                      .+.++
T Consensus       531 erlL~  535 (677)
T KOG1915|consen  531 ERLLD  535 (677)
T ss_pred             HHHHH
Confidence            55544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.04  E-value=4.9e-08  Score=85.17  Aligned_cols=190  Identities=11%  Similarity=-0.023  Sum_probs=152.5

Q ss_pred             chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHH
Q 036356          235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY  314 (462)
Q Consensus       235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  314 (462)
                      ..+..+...+...|++++|...++...+..                 +.+...+..+...+...|++++|.+.+.+.+  
T Consensus        32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--   92 (234)
T TIGR02521        32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-----------------PDDYLAYLALALYYQQLGELEKAEDSFRRAL--   92 (234)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence            456667788889999999999999988754                 2456778888899999999999999999843  


Q ss_pred             HHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-----CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036356          315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP  389 (462)
Q Consensus       315 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  389 (462)
                         ... +.+...+..+...+...|++++|.+.++...+     .....+..+...+...|++++|...+.+..+  ..|
T Consensus        93 ---~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~  166 (234)
T TIGR02521        93 ---TLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--IDP  166 (234)
T ss_pred             ---hhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCc
Confidence               222 23456777888899999999999999998763     1234567788889999999999999999988  455


Q ss_pred             C-HhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356          390 R-HQHYARVVDLLARAGYSNHAFKFIMNM-PI-ELRLSVRRALLSAWKIPMQQWENMLQTIRG  449 (462)
Q Consensus       390 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  449 (462)
                      + ...+..+...+...|++++|.+.+++. .. ..+...+..+...+...|+.++|......+
T Consensus       167 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       167 QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            5 668888999999999999999999987 32 335667778888888999998888665443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.03  E-value=2.8e-08  Score=86.68  Aligned_cols=196  Identities=15%  Similarity=0.117  Sum_probs=143.8

Q ss_pred             chHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhh
Q 036356          174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQG  253 (462)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a  253 (462)
                      ...+..+...|...|++++|...+++..+.++                          .+...+..+...+...|++++|
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--------------------------~~~~~~~~la~~~~~~~~~~~A   84 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP--------------------------DDYLAYLALALYYQQLGELEKA   84 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--------------------------ccHHHHHHHHHHHHHcCCHHHH
Confidence            34455556666666666666666655432211                          2234556667778888999999


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHH
Q 036356          254 KIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID  333 (462)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~  333 (462)
                      .+.++...+...                 .+...+..+...+...|++++|.+.+.+.+.    ..........+..+..
T Consensus        85 ~~~~~~al~~~~-----------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~  143 (234)
T TIGR02521        85 EDSFRRALTLNP-----------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE----DPLYPQPARSLENAGL  143 (234)
T ss_pred             HHHHHHHHhhCC-----------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHh----ccccccchHHHHHHHH
Confidence            999998887642                 4556777888889999999999999998532    1112223456677788


Q ss_pred             HHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHH
Q 036356          334 MYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHA  410 (462)
Q Consensus       334 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  410 (462)
                      .+...|++++|...+++..+  | +...+..+...+...|++++|...+++.... .+.+...+..+...+...|+.++|
T Consensus       144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a  222 (234)
T TIGR02521       144 CALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAA  222 (234)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHH
Confidence            89999999999999988763  3 4557788889999999999999999999885 233467777888888999999999


Q ss_pred             HHHHHhC
Q 036356          411 FKFIMNM  417 (462)
Q Consensus       411 ~~~~~~m  417 (462)
                      ..+.+.+
T Consensus       223 ~~~~~~~  229 (234)
T TIGR02521       223 QRYGAQL  229 (234)
T ss_pred             HHHHHHH
Confidence            9987765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.01  E-value=1.1e-06  Score=82.67  Aligned_cols=343  Identities=9%  Similarity=-0.054  Sum_probs=240.3

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHH----HhcCCcchhHHHHHhhhcCCCCCe
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMI----KLGLELESDLLISLTAVCRYQPNV  134 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~g~~~~~~~l~~~~~~~~~~p~~  134 (462)
                      +++..-++.|..+++..   ++.+...|.+....=-+.|+.+...+++++-.    ..|+                ..+.
T Consensus       416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv----------------~i~r  479 (913)
T KOG0495|consen  416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGV----------------EINR  479 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcce----------------eecH
Confidence            44445566666666666   66667777777777777777777777766533    3455                5666


Q ss_pred             eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC--chHHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHH
Q 036356          135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRS  209 (462)
Q Consensus       135 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~  209 (462)
                      .-|-.=...|-+.|..-.+..+....     ..-|+.-.  ..||+.-...|.+.+.++-|..+|....+   .+...|.
T Consensus       480 dqWl~eAe~~e~agsv~TcQAIi~av-----igigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWl  554 (913)
T KOG0495|consen  480 DQWLKEAEACEDAGSVITCQAIIRAV-----IGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWL  554 (913)
T ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHH-----HhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHH
Confidence            66666666677777777777777664     45554332  45677777777777877777777766553   3445565


Q ss_pred             HHHHHHHhCc--hHHHHHHHhhhc--CCcc-hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCC
Q 036356          210 AMIVGYGLHE--WSAFGSFDGLLS--NEEN-EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN  284 (462)
Q Consensus       210 ~li~~~~~~~--~~a~~~~~~m~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  284 (462)
                      .....--..|  ++-..+|++...  |-.. .|-......-..|++..|..++....+..                 +.+
T Consensus       555 ra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-----------------pns  617 (913)
T KOG0495|consen  555 RAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-----------------PNS  617 (913)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-----------------CCc
Confidence            5554444455  777777777777  4433 34444455567788999998888888764                 246


Q ss_pred             HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--CCc-cchHH
Q 036356          285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDV-VMRSA  361 (462)
Q Consensus       285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~  361 (462)
                      ...|-+-+.....+.++++|..+|.+       ..+..|+...|..-+..---.+..++|.+++++..+  |+. ..|-.
T Consensus       618 eeiwlaavKle~en~e~eraR~llak-------ar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lm  690 (913)
T KOG0495|consen  618 EEIWLAAVKLEFENDELERARDLLAK-------ARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLM  690 (913)
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHH-------HhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHH
Confidence            77888888888889999999999877       456778888887777777778888999998887764  443 35666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCC
Q 036356          362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKIPMQ  438 (462)
Q Consensus       362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~  438 (462)
                      +...+-+.++++.|.+.+..=.+  .-|+ ...|-.|...=-+.|.+-+|..+++..  .-+.+...|-..++.=.+.|+
T Consensus       691 lGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn  768 (913)
T KOG0495|consen  691 LGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN  768 (913)
T ss_pred             HhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC
Confidence            66777777788888777665544  4455 556777777777788899999999887  434577788889999899999


Q ss_pred             hHHHHHHHHhhhh
Q 036356          439 QWENMLQTIRGID  451 (462)
Q Consensus       439 ~~~a~~~~~~~~~  451 (462)
                      .+.|...+-+.++
T Consensus       769 ~~~a~~lmakALQ  781 (913)
T KOG0495|consen  769 KEQAELLMAKALQ  781 (913)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888766655554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.01  E-value=9e-08  Score=90.45  Aligned_cols=102  Identities=18%  Similarity=0.122  Sum_probs=73.6

Q ss_pred             cchHHHHHHhhcCccchhhHHHHHHHHHHh-----cCCcchhHHHHHhhhcCCCCCeee-HHHHHHHHHhCCChhHHHHH
Q 036356           83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKL-----GLELESDLLISLTAVCRYQPNVTL-RNAMISGYAKNGYAEEAVKL  156 (462)
Q Consensus        83 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g~~~~~~~l~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~  156 (462)
                      ..++..+...|...|+++.|..++++..+.     |.               ..|...+ .+.+...|...+++++|..+
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~---------------~hl~va~~l~~~a~~y~~~~k~~eAv~l  263 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL---------------KHLVVASMLNILALVYRSLGKYDEAVNL  263 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc---------------cCHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            457777999999999999999999998876     21               1244433 33467788999999999999


Q ss_pred             HHHhhhhhhhhcC-CCCC-chHHHHHHHHHHhcCCcccHHHHhhc
Q 036356          157 FPKWMDYYIGKSE-YRNN-VIVNTVLIDMYAKCGSVDLAPMFFDR  199 (462)
Q Consensus       157 ~~~m~~~~~~~~~-~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~  199 (462)
                      |+++........| ..|. ..+++.|..+|.+.|++++|...+++
T Consensus       264 y~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~  308 (508)
T KOG1840|consen  264 YEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER  308 (508)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence            9998532222222 2232 34677788889999999998887764

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.00  E-value=3.4e-07  Score=82.75  Aligned_cols=362  Identities=11%  Similarity=0.078  Sum_probs=224.7

Q ss_pred             CCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCCC-cchHHHHHHhhcCcc
Q 036356           24 PSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSNE-ENEYGTALDCSCDLE   97 (462)
Q Consensus        24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~~-~~~~~~ll~~~~~~~   97 (462)
                      ++...|.++|+..+....           .++..|-..   -.++.....|..+++..  .-|. ...|-..+..=-..|
T Consensus        87 ~e~~RARSv~ERALdvd~-----------r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg  155 (677)
T KOG1915|consen   87 KEIQRARSVFERALDVDY-----------RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG  155 (677)
T ss_pred             HHHHHHHHHHHHHHhccc-----------ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence            345556777777665543           344444433   55666667777777766  2232 234445555555567


Q ss_pred             chhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHH
Q 036356           98 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN  177 (462)
Q Consensus        98 ~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~  177 (462)
                      ++..|.++|++=...                  .|+...|++.|+--.+.+.++.|..+|+...       -+.|++.+|
T Consensus       156 Ni~gaRqiferW~~w------------------~P~eqaW~sfI~fElRykeieraR~IYerfV-------~~HP~v~~w  210 (677)
T KOG1915|consen  156 NIAGARQIFERWMEW------------------EPDEQAWLSFIKFELRYKEIERARSIYERFV-------LVHPKVSNW  210 (677)
T ss_pred             ccHHHHHHHHHHHcC------------------CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------eecccHHHH
Confidence            777777777766554                  5677777777777777777777777777751       134667776


Q ss_pred             HHHHHHHHhcCCcccHHHHhhccCC--CCcchHHHHHHHH----------------------------------------
Q 036356          178 TVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMIVGY----------------------------------------  215 (462)
Q Consensus       178 ~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~----------------------------------------  215 (462)
                      ---.+.=-++|++..|..+++...+  .|...-..+..+|                                        
T Consensus       211 ikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fE  290 (677)
T KOG1915|consen  211 IKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFE  290 (677)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence            6666666666776666666654331  0100001111111                                        


Q ss_pred             ---HhC-c-hHHHHH-----HHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCc-ch------------
Q 036356          216 ---GLH-E-WSAFGS-----FDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL-ES------------  269 (462)
Q Consensus       216 ---~~~-~-~~a~~~-----~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~------------  269 (462)
                         +.. | ++++--     ++.+.+   -|-.+|--.+..-...|+.+...++|+..+.. ++| ..            
T Consensus       291 KqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWi  369 (677)
T KOG1915|consen  291 KQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWI  369 (677)
T ss_pred             HHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHH
Confidence               110 1 222111     111222   23334444555555667777777777776653 222 11            


Q ss_pred             -----------------HHHHHHHHhhcCCCCHhHHHHHHHHHH----cCCChhHHHHHhhHHHHHHHHhhCCCCchhHH
Q 036356          270 -----------------DLLISLTAVCRYQPNVTLWNAMISGYA----KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN  328 (462)
Q Consensus       270 -----------------~~~~~l~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~  328 (462)
                                       .+|...+..  ++....||..+--.|+    +..++..|.++++.       .-|.-|-..+|
T Consensus       370 nYalyeEle~ed~ertr~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~-------AIG~cPK~KlF  440 (677)
T KOG1915|consen  370 NYALYEELEAEDVERTRQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN-------AIGKCPKDKLF  440 (677)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH-------HhccCCchhHH
Confidence                             111111110  3445566666554444    56788889888887       45888989999


Q ss_pred             HHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhc
Q 036356          329 TVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPRHQHYARVVDLLARA  404 (462)
Q Consensus       329 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~  404 (462)
                      -..|..=.+.++++.+.+++++..+   .|..+|......-...|+.+.|..+|.-..+. .+......|...|+-=...
T Consensus       441 k~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~  520 (677)
T KOG1915|consen  441 KGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEE  520 (677)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhc
Confidence            9999998999999999999998874   37788888888888899999999999999875 2333356778888888899


Q ss_pred             CChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036356          405 GYSNHAFKFIMNM-PIELRLSVRRALLS  431 (462)
Q Consensus       405 g~~~~A~~~~~~m-~~~p~~~~~~~l~~  431 (462)
                      |.++.|..+++.+ ...+...+|-++..
T Consensus       521 ~E~ekaR~LYerlL~rt~h~kvWisFA~  548 (677)
T KOG1915|consen  521 GEFEKARALYERLLDRTQHVKVWISFAK  548 (677)
T ss_pred             chHHHHHHHHHHHHHhcccchHHHhHHH
Confidence            9999999999987 33444456655543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=2.5e-07  Score=85.45  Aligned_cols=279  Identities=12%  Similarity=0.001  Sum_probs=212.5

Q ss_pred             CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356           82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM  161 (462)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  161 (462)
                      +......-..-|-..+++++..++.+...+..+                 +....+..=|.++...|+..+-..+=.+| 
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-----------------fh~~~~~~~ia~l~el~~~n~Lf~lsh~L-  304 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDP-----------------FHLPCLPLHIACLYELGKSNKLFLLSHKL-  304 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-----------------CCcchHHHHHHHHHHhcccchHHHHHHHH-
Confidence            344445555666677899999999999988876                 78888888888999999988877777775 


Q ss_pred             hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHHHHHHHHHhCc--hHHHHHHHhhhc--C-C
Q 036356          162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMIVGYGLHE--WSAFGSFDGLLS--N-E  233 (462)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~--~~a~~~~~~m~~--~-~  233 (462)
                           ....+-...+|-++.-.|.-.|+..+|.+.|.+-..   .=...|-....+|+-.+  +.|+..+...-+  | .
T Consensus       305 -----V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~  379 (611)
T KOG1173|consen  305 -----VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC  379 (611)
T ss_pred             -----HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence                 233455678999999999999999999999987553   34467888888888887  888877776665  2 2


Q ss_pred             cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356          234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD  313 (462)
Q Consensus       234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  313 (462)
                      --.+--+---|.+.++++-|.++|.+.....                 +-|....+-+--.....+.+.+|..+|+..+.
T Consensus       380 hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-----------------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~  442 (611)
T KOG1173|consen  380 HLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-----------------PSDPLVLHELGVVAYTYEEYPEALKYFQKALE  442 (611)
T ss_pred             cchHHHHHHHHHHhccHHHHHHHHHHHHhcC-----------------CCcchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence            2223334455778899999999998876642                 24666677776667778899999999988662


Q ss_pred             HHHHhhCCC--CchhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036356          314 YYIGKSEYR--NNVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE  388 (462)
Q Consensus       314 ~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  388 (462)
                       .++..+-+  -...+++.|..+|.+.+..++|+..|+...   ..|..++.++...|...|+++.|.+.|.+...  +.
T Consensus       443 -~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~  519 (611)
T KOG1173|consen  443 -VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LK  519 (611)
T ss_pred             -HhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cC
Confidence             12222221  245678888999999999999999999765   56888999999999999999999999999887  89


Q ss_pred             CCHhHHHHHHHHHHh
Q 036356          389 PRHQHYARVVDLLAR  403 (462)
Q Consensus       389 p~~~~~~~li~~~~~  403 (462)
                      |+..+-..++..+..
T Consensus       520 p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  520 PDNIFISELLKLAIE  534 (611)
T ss_pred             CccHHHHHHHHHHHH
Confidence            998777777765543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=1.6e-07  Score=85.04  Aligned_cols=203  Identities=12%  Similarity=-0.036  Sum_probs=115.6

Q ss_pred             hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 036356          220 WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYA  296 (462)
Q Consensus       220 ~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~  296 (462)
                      ..|..-|+....  |. ...|-.+...|....+-++..+.|+...+.+..               .||  +|..=...+.
T Consensus       343 ~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~---------------n~d--vYyHRgQm~f  405 (606)
T KOG0547|consen  343 LGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE---------------NPD--VYYHRGQMRF  405 (606)
T ss_pred             hhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC---------------CCc--hhHhHHHHHH
Confidence            666666766666  22 223666777777888888888888877765532               233  3333333344


Q ss_pred             cCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCCh
Q 036356          297 KNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLG  372 (462)
Q Consensus       297 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~  372 (462)
                      -.+++++|..-|++.       ..+.|+ +..|--+--+.-+.++++++...|++..+  | -+..|+.....+...+++
T Consensus       406 lL~q~e~A~aDF~Ka-------i~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqF  478 (606)
T KOG0547|consen  406 LLQQYEEAIADFQKA-------ISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQF  478 (606)
T ss_pred             HHHHHHHHHHHHHHH-------hhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhH
Confidence            456666776666662       233332 34444444444556667777777766653  3 344666666666677777


Q ss_pred             HHHHHHHHHHHHCCCCCC---------HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHccCChHH
Q 036356          373 EEGWVLFHHIRKHGIEPR---------HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLSAWKIPMQQWE  441 (462)
Q Consensus       373 ~~a~~~~~~m~~~g~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~  441 (462)
                      +.|.+.|+...+  +.|+         ......++..-. .+++..|.+++++. .+.|. ...|.+|...-+++|+.++
T Consensus       479 d~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~e  555 (606)
T KOG0547|consen  479 DKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDE  555 (606)
T ss_pred             HHHHHHHHHHHh--hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHH
Confidence            777777766665  3333         111111221112 26666677776666 44453 3466666666677777777


Q ss_pred             HHHHHHhh
Q 036356          442 NMLQTIRG  449 (462)
Q Consensus       442 a~~~~~~~  449 (462)
                      |++.|++.
T Consensus       556 AielFEks  563 (606)
T KOG0547|consen  556 AIELFEKS  563 (606)
T ss_pred             HHHHHHHH
Confidence            76666543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.97  E-value=1.6e-07  Score=88.76  Aligned_cols=246  Identities=13%  Similarity=0.050  Sum_probs=172.6

Q ss_pred             chHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcch-HHHHHHhhcCccchhh
Q 036356          174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENE-YGTALDCSCDLEFLEQ  252 (462)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~-~~~ll~~~~~~~~~~~  252 (462)
                      ..+...+...|...|+++.|+.+++...+.       +-..+...            -|...+ .+.+...|...+++++
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~-------l~k~~G~~------------hl~va~~l~~~a~~y~~~~k~~e  259 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRI-------LEKTSGLK------------HLVVASMLNILALVYRSLGKYDE  259 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------HHHccCcc------------CHHHHHHHHHHHHHHHHhccHHH
Confidence            456666889999999999999998764421       00000000            011111 2245667788899999


Q ss_pred             hHHHHHHHHHhCCCcchHHHHHHHHhhc-CCC-CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCC-Cch-hHH
Q 036356          253 GKIVHGFMIKLGLELESDLLISLTAVCR-YQP-NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR-NNV-IVN  328 (462)
Q Consensus       253 a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-p~~-~~~  328 (462)
                      |..+|+.+..--           ...+| ..| -+.+++.|-.+|.+.|++++|...+++.+.-.-...|.. |.+ ..+
T Consensus       260 Av~ly~~AL~i~-----------e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l  328 (508)
T KOG1840|consen  260 AVNLYEEALTIR-----------EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL  328 (508)
T ss_pred             HHHHHHHHHHHH-----------HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence            999998876531           11122 122 245688888899999999999999998765222222222 222 345


Q ss_pred             HHHHHHHHhcCCcchHHHHhccCC-------CCC----ccchHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-
Q 036356          329 TVLIDMYAKCGSVDLAPMFFDRTL-------DKD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH------GIEPR-  390 (462)
Q Consensus       329 ~~li~~~~~~g~~~~A~~~~~~~~-------~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-  390 (462)
                      +.+...|+..+++++|..+++...       .++    ..+++.|...|...|++++|.+++++....      +..+. 
T Consensus       329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~  408 (508)
T KOG1840|consen  329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV  408 (508)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence            667778889999999998887654       122    247899999999999999999999987765      22333 


Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356          391 HQHYARVVDLLARAGYSNHAFKFIMNM--------PIELR-LSVRRALLSAWKIPMQQWENMLQTIRG  449 (462)
Q Consensus       391 ~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~  449 (462)
                      ...++.+...|.+.+++++|.++|.+.        +-.|+ ..+|..|...|...|+++.|.......
T Consensus       409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~  476 (508)
T KOG1840|consen  409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV  476 (508)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            567889999999999999999988876        23343 458999999999999999998665543

>PRK12370 invasion protein regulator; Provisional

Probab=98.92  E-value=9.6e-08  Score=94.21  Aligned_cols=228  Identities=11%  Similarity=-0.028  Sum_probs=125.6

Q ss_pred             cchHHHHHHhhc-----CccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHH---------hCC
Q 036356           83 ENEYGTALDCSC-----DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYA---------KNG  148 (462)
Q Consensus        83 ~~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~---------~~g  148 (462)
                      ...|...+++..     ..++++.|...|++..+..+                 -+...|..+..++.         ..+
T Consensus       256 ~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-----------------~~a~a~~~La~~~~~~~~~g~~~~~~  318 (553)
T PRK12370        256 IDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-----------------NSIAPYCALAECYLSMAQMGIFDKQN  318 (553)
T ss_pred             hHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-----------------ccHHHHHHHHHHHHHHHHcCCcccch
Confidence            345556666532     22456789999999887754                 34445655554443         234


Q ss_pred             ChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHh
Q 036356          149 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDG  228 (462)
Q Consensus       149 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~  228 (462)
                      ++++|...+++.     .+. -+-+...+..+...+...|++++|...|++..+.++.                      
T Consensus       319 ~~~~A~~~~~~A-----l~l-dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~----------------------  370 (553)
T PRK12370        319 AMIKAKEHAIKA-----TEL-DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI----------------------  370 (553)
T ss_pred             HHHHHHHHHHHH-----Hhc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------------------
Confidence            478888888875     222 1234566777777777888888888888776532221                      


Q ss_pred             hhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCH-hHHHHHHHHHHcCCChhHHHHH
Q 036356          229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV-TLWNAMISGYAKNGYAEEAVKL  307 (462)
Q Consensus       229 m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~  307 (462)
                          +...+..+..++...|++++|...++...+..                  |+. ..+..+...+...|++++|...
T Consensus       371 ----~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~------------------P~~~~~~~~~~~~~~~~g~~eeA~~~  428 (553)
T PRK12370        371 ----SADIKYYYGWNLFMAGQLEEALQTINECLKLD------------------PTRAAAGITKLWITYYHTGIDDAIRL  428 (553)
T ss_pred             ----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------------CCChhhHHHHHHHHHhccCHHHHHHH
Confidence                12233344445556666666766666666643                  321 1222233334456666777666


Q ss_pred             hhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--CC-ccchHHHHHHHHhcCChHHHHHHHHHHH
Q 036356          308 FPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD-VVMRSAMTVGYGLHGLGEEGWVLFHHIR  383 (462)
Q Consensus       308 ~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~  383 (462)
                      +.+.     .... .| +...+..+..+|...|+.++|...++++..  |+ ....+.+...|+..|  ++|...++.+.
T Consensus       429 ~~~~-----l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll  500 (553)
T PRK12370        429 GDEL-----RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL  500 (553)
T ss_pred             HHHH-----HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence            6652     2221 12 233345555566666777777666666542  21 122333444445444  35555555555


Q ss_pred             HC
Q 036356          384 KH  385 (462)
Q Consensus       384 ~~  385 (462)
                      +.
T Consensus       501 ~~  502 (553)
T PRK12370        501 ES  502 (553)
T ss_pred             HH
Confidence            43

>PRK12370 invasion protein regulator; Provisional

Probab=98.89  E-value=4.8e-07  Score=89.35  Aligned_cols=203  Identities=10%  Similarity=-0.065  Sum_probs=148.1

Q ss_pred             hHHHHHHHhhhc--CCcc-hHHHHHHhhc---------CccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhH
Q 036356          220 WSAFGSFDGLLS--NEEN-EYGTALDCSC---------DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL  287 (462)
Q Consensus       220 ~~a~~~~~~m~~--~~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  287 (462)
                      ++|...|++..+  |+.. .|..+..++.         ..+++++|...++...+..                 +.+...
T Consensus       278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-----------------P~~~~a  340 (553)
T PRK12370        278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-----------------HNNPQA  340 (553)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-----------------CCCHHH
Confidence            788899998888  5543 3433333322         3456889999999998864                 246777


Q ss_pred             HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--CCcc-chHHHH
Q 036356          288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVV-MRSAMT  363 (462)
Q Consensus       288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li  363 (462)
                      +..+...+...|++++|...|++.+     +  ..|+ ...+..+...|...|++++|...+++..+  |+.. .+..+.
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al-----~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~  413 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQAN-----L--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKL  413 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHH-----H--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence            8888888999999999999999943     2  2344 56777888899999999999999999874  4432 334445


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHccCChH
Q 036356          364 VGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS-VRRALLSAWKIPMQQW  440 (462)
Q Consensus       364 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~~~~~~~  440 (462)
                      ..+...|++++|...+++..+.. .|+ ...+..+..++...|++++|...++++ ...|+.. .++.+...|+..|+  
T Consensus       414 ~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--  490 (553)
T PRK12370        414 WITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--  490 (553)
T ss_pred             HHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--
Confidence            56777899999999999987632 354 455777888889999999999999998 4455533 45566667777774  


Q ss_pred             HHHHHHHhh
Q 036356          441 ENMLQTIRG  449 (462)
Q Consensus       441 ~a~~~~~~~  449 (462)
                      +|...+.+.
T Consensus       491 ~a~~~l~~l  499 (553)
T PRK12370        491 RALPTIREF  499 (553)
T ss_pred             HHHHHHHHH
Confidence            555445443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.89  E-value=2.6e-07  Score=88.41  Aligned_cols=291  Identities=13%  Similarity=0.065  Sum_probs=182.9

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +...|++++|++.++.-   +.............+.+.|+.++|..++..+.++++                 .|..-|.
T Consensus        14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-----------------dn~~Yy~   76 (517)
T PF12569_consen   14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-----------------DNYDYYR   76 (517)
T ss_pred             HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----------------CcHHHHH
Confidence            78889999999999887   444455677778888899999999999999999875                 5555566


Q ss_pred             HHHHHHHhCC-----ChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcc-cHHHHhhccCCCCcchHHHHH
Q 036356          139 AMISGYAKNG-----YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD-LAPMFFDRTLDKDVVMRSAMI  212 (462)
Q Consensus       139 ~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~~~~~li  212 (462)
                      .+..+.....     +.+...++|+++      .... |.......+.-.+....++. .+...+..+..+++.+     
T Consensus        77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l------~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs-----  144 (517)
T PF12569_consen   77 GLEEALGLQLQLSDEDVEKLLELYDEL------AEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS-----  144 (517)
T ss_pred             HHHHHHhhhcccccccHHHHHHHHHHH------HHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch-----
Confidence            6666653332     466777778775      2222 22222211111111111111 1122222222333322     


Q ss_pred             HHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHh----CCCcchHHHHHHHHhhcCCCCHhHH
Q 036356          213 VGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKL----GLELESDLLISLTAVCRYQPNVTLW  288 (462)
Q Consensus       213 ~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~  288 (462)
                                             +|+.+-..|......+-...++......    +-.+...      ..-...|....|
T Consensus       145 -----------------------lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~------~~~~~~p~~~lw  195 (517)
T PF12569_consen  145 -----------------------LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGD------DEEKEPPSTLLW  195 (517)
T ss_pred             -----------------------HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcc------ccccCCchHHHH
Confidence                                   2333333333333333333333333322    1100000      000013555444


Q ss_pred             --HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHH
Q 036356          289 --NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAM  362 (462)
Q Consensus       289 --~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l  362 (462)
                        ..+...|...|++++|+++.++.+       ...|+ +..|..-.+.|-+.|++++|....+....   .|...-+..
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI-------~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~  268 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAI-------EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKC  268 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHH
Confidence              555677889999999999999854       23565 67788888999999999999999998774   467777888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHhH------H--HHHHHHHHhcCChHHHHHHHHhC
Q 036356          363 TVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH------Y--ARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       363 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~------~--~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +..+.++|++++|.+++....+.+..|-...      |  .....+|.+.|++..|++-|..+
T Consensus       269 aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  269 AKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV  331 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999999999999998876554322      2  44667899999999998876655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.88  E-value=1.3e-06  Score=83.62  Aligned_cols=280  Identities=13%  Similarity=0.070  Sum_probs=192.7

Q ss_pred             HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--CCcchHHHH-HHHHH-
Q 036356          141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAM-IVGYG-  216 (462)
Q Consensus       141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~l-i~~~~-  216 (462)
                      ...+...|++++|++.+++      ....+.............+.+.|+.++|..++..+.+  |+-..|... ..+.. 
T Consensus        11 ~~il~e~g~~~~AL~~L~~------~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~   84 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEK------NEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL   84 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHh------hhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence            3556889999999999988      4555655567778889999999999999999999985  444444443 44431 


Q ss_pred             --h-C--c-hHHHHHHHhhhc--CCcchHHHHHHhhcCccch-hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhH
Q 036356          217 --L-H--E-WSAFGSFDGLLS--NEENEYGTALDCSCDLEFL-EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL  287 (462)
Q Consensus       217 --~-~--~-~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  287 (462)
                        . .  . +....+++++..  |.......+.-.+.....+ ..+...+..+.+.|++                   .+
T Consensus        85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP-------------------sl  145 (517)
T PF12569_consen   85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP-------------------SL  145 (517)
T ss_pred             hcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc-------------------hH
Confidence              1 1  2 677888888877  7666665555444443333 3455666777777763                   33


Q ss_pred             HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh----------CCCCchh--HHHHHHHHHHhcCCcchHHHHhccCCC--
Q 036356          288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS----------EYRNNVI--VNTVLIDMYAKCGSVDLAPMFFDRTLD--  353 (462)
Q Consensus       288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~--  353 (462)
                      |+.+-..|....+.+-..+++.....+ +...          .-.|+..  ++.-+...|...|++++|...+++..+  
T Consensus       146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~-l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht  224 (517)
T PF12569_consen  146 FSNLKPLYKDPEKAAIIESLVEEYVNS-LESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT  224 (517)
T ss_pred             HHHHHHHHcChhHHHHHHHHHHHHHHh-hcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            455555565555555555555553322 1111          1234443  445567778899999999999998774  


Q ss_pred             CC-ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCC------
Q 036356          354 KD-VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM---PIELR------  422 (462)
Q Consensus       354 ~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~------  422 (462)
                      |+ +..|..-.+.+-+.|++++|.+.++..+.  +.+. ...=+-.+..+.++|+.++|.+++...   +..|.      
T Consensus       225 Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m  302 (517)
T PF12569_consen  225 PTLVELYMTKARILKHAGDLKEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM  302 (517)
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence            43 44677778889999999999999999998  5554 444556777888999999999999888   22222      


Q ss_pred             HHHH--HHHHHHHHccCChHHHHHHHHh
Q 036356          423 LSVR--RALLSAWKIPMQQWENMLQTIR  448 (462)
Q Consensus       423 ~~~~--~~l~~~~~~~~~~~~a~~~~~~  448 (462)
                      ..+|  ..-..+|.+.|++..|+..+..
T Consensus       303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~  330 (517)
T PF12569_consen  303 QCMWFETECAEAYLRQGDYGLALKRFHA  330 (517)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            2244  4567899999999999866654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12854 PPR_1: PPR repeat

Probab=98.87  E-value=4.1e-09  Score=59.99  Aligned_cols=33  Identities=30%  Similarity=0.541  Sum_probs=30.4

Q ss_pred             CCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       385 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +|+.||..||++||.+||+.|++++|.++|++|
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            478999999999999999999999999999988

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=2.8e-06  Score=75.70  Aligned_cols=290  Identities=14%  Similarity=0.010  Sum_probs=188.9

Q ss_pred             CCeeeHHHHHHHHH--hCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHH
Q 036356          132 PNVTLRNAMISGYA--KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS  209 (462)
Q Consensus       132 p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~  209 (462)
                      |...+...-+.+++  -.++...|...+-..    ....-++-|+.....+.+.+...|+.++|+..|++...-|+.+..
T Consensus       192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~l----e~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~  267 (564)
T KOG1174|consen  192 DHFDWLSKWIKALAQMFNFKHSDASQTFLML----HDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE  267 (564)
T ss_pred             CCccHHHHHHHHHHHHHhcccchhhhHHHHH----HhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh
Confidence            33333344454443  345555555554443    145667888999999999999999999999999987755544433


Q ss_pred             HH---HHHHHhCc--hHHHHHHHhhhcC---CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcC
Q 036356          210 AM---IVGYGLHE--WSAFGSFDGLLSN---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY  281 (462)
Q Consensus       210 ~l---i~~~~~~~--~~a~~~~~~m~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  281 (462)
                      .|   .-.+.+.|  +....+...+...   +...|-.-....-..++++.|+.+-+..++..                 
T Consensus       268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-----------------  330 (564)
T KOG1174|consen  268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-----------------  330 (564)
T ss_pred             hHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-----------------
Confidence            32   11122333  4444444444442   22233333334445677777777776666543                 


Q ss_pred             CCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC---CCCcc
Q 036356          282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVV  357 (462)
Q Consensus       282 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~  357 (462)
                      ..++..+-.--..+...|++++|.-.|+..       ....| +...|.-|+..|...|++.+|...-+...   ..+..
T Consensus       331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~A-------q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~  403 (564)
T KOG1174|consen  331 PRNHEALILKGRLLIALERHTQAVIAFRTA-------QMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR  403 (564)
T ss_pred             cccchHHHhccHHHHhccchHHHHHHHHHH-------HhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence            134444444455677889999998888873       34554 57889999999999999888776554332   22333


Q ss_pred             chHHHH-HHHHhc-CChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 036356          358 MRSAMT-VGYGLH-GLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAW  433 (462)
Q Consensus       358 ~~~~li-~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~  433 (462)
                      +.+.+. ..|.-. .--++|.+++++-.+  +.|+ ....+.+...+...|..++++.++++. ...||...-+.|.+.+
T Consensus       404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~  481 (564)
T KOG1174|consen  404 SLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIM  481 (564)
T ss_pred             hhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHH
Confidence            333331 222221 223788888888777  7787 667788888888889999999998887 6678888888888888


Q ss_pred             HccCChHHHHHHHHhhhh
Q 036356          434 KIPMQQWENMLQTIRGID  451 (462)
Q Consensus       434 ~~~~~~~~a~~~~~~~~~  451 (462)
                      ...+...+|+..+...++
T Consensus       482 ~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  482 RAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             HHhhhHHHHHHHHHHHHh
Confidence            888888888877765543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.83  E-value=5.8e-08  Score=83.47  Aligned_cols=222  Identities=13%  Similarity=-0.002  Sum_probs=134.9

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--CCcchHHH-HHHH
Q 036356          138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSA-MIVG  214 (462)
Q Consensus       138 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~-li~~  214 (462)
                      +-+..+|.+.|.+.+|.+.|+.-       ..-.|-+.||-.|-+.|-+..+++.|+.++.+-.+  |..+||-. +.+.
T Consensus       227 ~Q~gkCylrLgm~r~Aekqlqss-------L~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi  299 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSS-------LTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI  299 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHH-------hhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence            46778888999999998888773       23355667777788889999999999998887764  44444322 2233


Q ss_pred             HHhCc--hHHHHHHHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHH
Q 036356          215 YGLHE--WSAFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN  289 (462)
Q Consensus       215 ~~~~~--~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  289 (462)
                      +-..+  ++|.++|+...+   .++.....+...|.-.++.+.|.+.|..+.+.|+                 -+...|+
T Consensus       300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-----------------~speLf~  362 (478)
T KOG1129|consen  300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-----------------QSPELFC  362 (478)
T ss_pred             HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-----------------CChHHHh
Confidence            32223  666666666655   3445555555556666667777777777777765                 3556666


Q ss_pred             HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc--hhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHH
Q 036356          290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTV  364 (462)
Q Consensus       290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~  364 (462)
                      .+--+|.-.++++-++.-|.+.+.     .--.|+  ..+|-.+-......||+..|.+.|+-...   .+...+|.|.-
T Consensus       363 NigLCC~yaqQ~D~~L~sf~RAls-----tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLav  437 (478)
T KOG1129|consen  363 NIGLCCLYAQQIDLVLPSFQRALS-----TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAV  437 (478)
T ss_pred             hHHHHHHhhcchhhhHHHHHHHHh-----hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHH
Confidence            666666666666666666666321     111121  23444444455555666666666665442   13345555555


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCC
Q 036356          365 GYGLHGLGEEGWVLFHHIRKHGIEPR  390 (462)
Q Consensus       365 ~~~~~~~~~~a~~~~~~m~~~g~~p~  390 (462)
                      .-.+.|+++.|..++....+  +.|+
T Consensus       438 L~~r~G~i~~Arsll~~A~s--~~P~  461 (478)
T KOG1129|consen  438 LAARSGDILGARSLLNAAKS--VMPD  461 (478)
T ss_pred             HHhhcCchHHHHHHHHHhhh--hCcc
Confidence            55666666666666666555  4454

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=2.2e-06  Score=79.41  Aligned_cols=399  Identities=11%  Similarity=-0.070  Sum_probs=237.4

Q ss_pred             hHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh-hccCCChhhHHHHHHhh--cCCCcchHHHH
Q 036356           13 PPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY-HLWSRTEWSAFGSFDGL--LSNEENEYGTA   89 (462)
Q Consensus        13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~m--~~~~~~~~~~l   89 (462)
                      |..+++-+....++..|.-+-+++...+.          .|+..-|..- +.-.|++++|..++..-  ...|..+....
T Consensus        19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~----------dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~   88 (611)
T KOG1173|consen   19 YRRLVRDALMQHRYKTALFWADKVAGLTN----------DPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLA   88 (611)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhccC----------ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            44444544455555555555555554443          3444444433 77788888888888776  77788888888


Q ss_pred             HHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhc-C---------------------------------------
Q 036356           90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC-R---------------------------------------  129 (462)
Q Consensus        90 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~-~---------------------------------------  129 (462)
                      ..++.+.+++++|..++..-...-.      .+.-|.+. +                                       
T Consensus        89 ~~~l~~lk~~~~al~vl~~~~~~~~------~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~  162 (611)
T KOG1173|consen   89 AKCLVKLKEWDQALLVLGRGHVETN------PFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARD  162 (611)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhhc------chhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHH
Confidence            8999999999999988872210000      00111111 0                                       


Q ss_pred             -----CCCCeeeHHHH---HHHHHhCC------------------ChhHHHHHHHHh----h-------hhhhhhcCCCC
Q 036356          130 -----YQPNVTLRNAM---ISGYAKNG------------------YAEEAVKLFPKW----M-------DYYIGKSEYRN  172 (462)
Q Consensus       130 -----~~p~~~~~~~l---i~~~~~~g------------------~~~~a~~~~~~m----~-------~~~~~~~~~~~  172 (462)
                           ...|...|.++   +.+..-..                  +.+.-..+|+--    .       .....-.+..-
T Consensus       163 ~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~  242 (611)
T KOG1173|consen  163 KYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAE  242 (611)
T ss_pred             HHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhh
Confidence                 11222222111   11110000                  000000111100    0       11112345667


Q ss_pred             CchHHHHHHHHHHhcCCcccHHHHhhccCCC---CcchHHHHHHHHHhCc--hHHHHHHHhhhc--CC-cchHHHHHHhh
Q 036356          173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK---DVVMRSAMIVGYGLHE--WSAFGSFDGLLS--NE-ENEYGTALDCS  244 (462)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~--~~a~~~~~~m~~--~~-~~~~~~ll~~~  244 (462)
                      ++.......+-+...+++.+..++++...+.   +...+..-|.++...|  .+-+.+=.++.+  |+ ..+|-++.--|
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY  322 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY  322 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence            7777788888888889999999998887754   3444555566666666  555555556666  44 56777777777


Q ss_pred             cCccchhhhHHHHHHHHHhCCC--cchHHHHHHHHh---h-----------c-CCCCHhHHHHHHHHHHcCCChhHHHHH
Q 036356          245 CDLEFLEQGKIVHGFMIKLGLE--LESDLLISLTAV---C-----------R-YQPNVTLWNAMISGYAKNGYAEEAVKL  307 (462)
Q Consensus       245 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~---~-----------~-~~~~~~~~~~li~~~~~~~~~~~a~~~  307 (462)
                      ...|...+|++.|.......-.  |--.-|.-....   +           . .+.....+--+---|.+.++.+.|.+.
T Consensus       323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~F  402 (611)
T KOG1173|consen  323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKF  402 (611)
T ss_pred             HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHH
Confidence            7778888888888876543321  100000000000   0           0 011111111122234555666666666


Q ss_pred             hhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC------C----CccchHHHHHHHHhcCChHHHH
Q 036356          308 FPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD------K----DVVMRSAMTVGYGLHGLGEEGW  376 (462)
Q Consensus       308 ~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~----~~~~~~~li~~~~~~~~~~~a~  376 (462)
                      |..       ..++.| |+...+-+.-..-..+.+.+|..+|+...+      +    -..+++.|..+|.+.+.+++|+
T Consensus       403 f~~-------A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI  475 (611)
T KOG1173|consen  403 FKQ-------ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI  475 (611)
T ss_pred             HHH-------HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence            654       445666 455666666666667788888888886652      1    2335778888899999999999


Q ss_pred             HHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHcc
Q 036356          377 VLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKIP  436 (462)
Q Consensus       377 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~  436 (462)
                      ..++....  ..| +..+|.++.-.|...|+++.|.+.|.+. .+.|+..+-..+++.+...
T Consensus       476 ~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  476 DYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            99999887  555 4788888888899999999999999887 7888888877777765544

>PF12854 PPR_1: PPR repeat

Probab=98.82  E-value=3.4e-09  Score=60.34  Aligned_cols=33  Identities=36%  Similarity=0.475  Sum_probs=23.7

Q ss_pred             CCCCCchHHHHHHHHHHhcCCcccHHHHhhccC
Q 036356          169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL  201 (462)
Q Consensus       169 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  201 (462)
                      |+.||..|||+||++|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            567777777777777777777777777777663

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.78  E-value=7.5e-06  Score=71.56  Aligned_cols=92  Identities=11%  Similarity=-0.011  Sum_probs=62.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCC
Q 036356          361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY-ARVVDLLARAGYSNHAFKFIMNMPIELR-LSVRRALLSAWKIPMQ  438 (462)
Q Consensus       361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~l~~~~~~~~~  438 (462)
                      .+..+++..|++.+|+++|-......++ |..+| ..|...|.+.+.++-|..++-++....+ ......+..-|.+.+.
T Consensus       398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~e  476 (557)
T KOG3785|consen  398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANE  476 (557)
T ss_pred             HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence            3566777788888888888776653333 34445 4556678888999999888888843333 3345566778888888


Q ss_pred             hHHHHHHHHhhhhcC
Q 036356          439 QWENMLQTIRGIDEG  453 (462)
Q Consensus       439 ~~~a~~~~~~~~~~~  453 (462)
                      +.-|...+.+.....
T Consensus       477 FyyaaKAFd~lE~lD  491 (557)
T KOG3785|consen  477 FYYAAKAFDELEILD  491 (557)
T ss_pred             HHHHHHhhhHHHccC
Confidence            888877765544333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=1e-05  Score=73.73  Aligned_cols=330  Identities=12%  Similarity=-0.055  Sum_probs=185.4

Q ss_pred             HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC-eeeHHHHHHHHHhCCChhHHHHHHHHhhhhh
Q 036356           86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN-VTLRNAMISGYAKNGYAEEAVKLFPKWMDYY  164 (462)
Q Consensus        86 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  164 (462)
                      +-...+-|-+.|.+++|++.|.+.+..                  .|| +..|.....+|...|+|+++.+.-.+     
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~l------------------~p~epiFYsNraAcY~~lgd~~~Vied~Tk-----  174 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIEL------------------CPDEPIFYSNRAACYESLGDWEKVIEDCTK-----  174 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHhc------------------CCCCchhhhhHHHHHHHHhhHHHHHHHHHH-----
Confidence            445566778899999999999999987                  467 78888899999999999998877655     


Q ss_pred             hhhcCCCCC-chHHHHHHHHHHhcCCcccHHHHhh------ccCCCCcchHHHHHHHHHhCc-hHHHHHHHhhhc---CC
Q 036356          165 IGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFD------RTLDKDVVMRSAMIVGYGLHE-WSAFGSFDGLLS---NE  233 (462)
Q Consensus       165 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~------~m~~~~~~~~~~li~~~~~~~-~~a~~~~~~m~~---~~  233 (462)
                        ...+.|+ +..+.--.+++-..|++++|+.=+.      ...  |..+--.+=+.+-+.+ ..+.+.+.+-..   |+
T Consensus       175 --ALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~--n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS  250 (606)
T KOG0547|consen  175 --ALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ--NASIEPMAERVLKKQAMKKAKEKLKENRPPVLPS  250 (606)
T ss_pred             --HhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc--cchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCc
Confidence              3445665 4566667778888888888754221      111  1100000011111222 333333332111   55


Q ss_pred             cchHHHHHHhhcC--------ccc-----hhhhHHHHHHHHHhCCCcchHHHH-----HHHHhhcCCCCHh------HHH
Q 036356          234 ENEYGTALDCSCD--------LEF-----LEQGKIVHGFMIKLGLELESDLLI-----SLTAVCRYQPNVT------LWN  289 (462)
Q Consensus       234 ~~~~~~ll~~~~~--------~~~-----~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~------~~~  289 (462)
                      .....+....+..        .++     ..++.+-+..-...|...-....+     .....|.-..|..      +..
T Consensus       251 ~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~  330 (606)
T KOG0547|consen  251 ATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL  330 (606)
T ss_pred             HHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence            4444444433321        011     111111111111111110000000     0000000001111      111


Q ss_pred             HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHH
Q 036356          290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGY  366 (462)
Q Consensus       290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~  366 (462)
                      .--.-+.-.|+.-.|..-|+..+     .....++ ..|--+..+|....+.++.++.|.+..+   .|..+|..=...+
T Consensus       331 ~~gtF~fL~g~~~~a~~d~~~~I-----~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~  404 (606)
T KOG0547|consen  331 LRGTFHFLKGDSLGAQEDFDAAI-----KLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR  404 (606)
T ss_pred             HhhhhhhhcCCchhhhhhHHHHH-----hcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence            11112334566667777776632     2222222 2255566677777788888888877653   3566676666666


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHHH
Q 036356          367 GLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKIPMQQWENM  443 (462)
Q Consensus       367 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~  443 (462)
                      .-.+++++|..=|++.++  +.|. ...|-.+.-+..+.+++++++..|++.  .++-.+..|+.....+..+++++.|+
T Consensus       405 flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~  482 (606)
T KOG0547|consen  405 FLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAV  482 (606)
T ss_pred             HHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHH
Confidence            677778888888888777  6675 566777777777788888888888877  45445677888888888888888887


Q ss_pred             HHHHhhh
Q 036356          444 LQTIRGI  450 (462)
Q Consensus       444 ~~~~~~~  450 (462)
                      +.+...+
T Consensus       483 k~YD~ai  489 (606)
T KOG0547|consen  483 KQYDKAI  489 (606)
T ss_pred             HHHHHHH
Confidence            7665543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=2.7e-05  Score=72.72  Aligned_cols=389  Identities=10%  Similarity=0.012  Sum_probs=209.7

Q ss_pred             HHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh-hccCCChhhHHHHHHhhc--CCCcchHHHHHHhh
Q 036356           17 LKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY-HLWSRTEWSAFGSFDGLL--SNEENEYGTALDCS   93 (462)
Q Consensus        17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~m~--~~~~~~~~~ll~~~   93 (462)
                      ++-+...+++++|.+....++..+...         ++.+.+..+ +.+.+++++|+.+.+.-.  ..+..-+.--..+.
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~pdd---------~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~   89 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIVPDD---------EDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCE   89 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcCCCc---------HhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHH
Confidence            344456667888888888887766331         344444555 888889999987766541  11111111223344


Q ss_pred             cCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCe-eeHHHHHHHHHhCCChhHHHHHHHHhh-----------
Q 036356           94 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV-TLRNAMISGYAKNGYAEEAVKLFPKWM-----------  161 (462)
Q Consensus        94 ~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~-----------  161 (462)
                      -+.+..++|...++     |.                .++. .+...=...+-+.|++++|+.+|+.+.           
T Consensus        90 Yrlnk~Dealk~~~-----~~----------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~  148 (652)
T KOG2376|consen   90 YRLNKLDEALKTLK-----GL----------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEER  148 (652)
T ss_pred             HHcccHHHHHHHHh-----cc----------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHH
Confidence            47788888888877     33                2333 345555566888999999999999883           


Q ss_pred             ------------hhhhhhcCCCCCchHHHHHH---HHHHhcCCcccHHHHhhcc--------CCCCc-----chHH----
Q 036356          162 ------------DYYIGKSEYRNNVIVNTVLI---DMYAKCGSVDLAPMFFDRT--------LDKDV-----VMRS----  209 (462)
Q Consensus       162 ------------~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m--------~~~~~-----~~~~----  209 (462)
                                  ..........| ..+|..+.   ..+...|++.+|+++++..        .+.|.     ..--    
T Consensus       149 r~nl~a~~a~l~~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Ir  227 (652)
T KOG2376|consen  149 RANLLAVAAALQVQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIR  227 (652)
T ss_pred             HHHHHHHHHhhhHHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence                        00112222233 22444333   3456678888888888765        11111     1111    


Q ss_pred             -HHHHHHHhCc--hHHHHHHHhhhc---CCcchHHHHHH---hhcCccchhh--hHHHHHHHHHh-----------CCCc
Q 036356          210 -AMIVGYGLHE--WSAFGSFDGLLS---NEENEYGTALD---CSCDLEFLEQ--GKIVHGFMIKL-----------GLEL  267 (462)
Q Consensus       210 -~li~~~~~~~--~~a~~~~~~m~~---~~~~~~~~ll~---~~~~~~~~~~--a~~~~~~~~~~-----------~~~~  267 (462)
                       .+.-.+-..|  ++|..++....+   +|........+   +...-.++-+  ++..++.....           .-.-
T Consensus       228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~  307 (652)
T KOG2376|consen  228 VQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ  307 (652)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence             1112334445  788888877777   44433222222   2222222222  11111111100           0000


Q ss_pred             chHHHHHHHHhhc---------------CCCCHhHHHHHHHHHH--cCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHH
Q 036356          268 ESDLLISLTAVCR---------------YQPNVTLWNAMISGYA--KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV  330 (462)
Q Consensus       268 ~~~~~~~l~~~~~---------------~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  330 (462)
                      ....=+.++.++-               ..|. ..+.+++....  +...+.+|..++..     ..+....-...+--.
T Consensus       308 ~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~-----~~~~~p~~s~~v~L~  381 (652)
T KOG2376|consen  308 AIYRNNALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQ-----FADGHPEKSKVVLLL  381 (652)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHH-----HhccCCchhHHHHHH
Confidence            0000011111100               1222 22333333322  22245666666655     222222222445555


Q ss_pred             HHHHHHhcCCcchHHHHhc--------cCCC--CCccchHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC----HhHH
Q 036356          331 LIDMYAKCGSVDLAPMFFD--------RTLD--KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH--GIEPR----HQHY  394 (462)
Q Consensus       331 li~~~~~~g~~~~A~~~~~--------~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~----~~~~  394 (462)
                      .+......|+++.|.+++.        .+.+  ....+-..+...+.+.++.+.|..++.+....  .-.+.    ..++
T Consensus       382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~  461 (652)
T KOG2376|consen  382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLM  461 (652)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHH
Confidence            6677788999999999888        3332  23345566777778888877777777766553  12222    2333


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHccCChHHHH
Q 036356          395 ARVVDLLARAGYSNHAFKFIMNM-P-IELRLSVRRALLSAWKIPMQQWENM  443 (462)
Q Consensus       395 ~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~l~~~~~~~~~~~~a~  443 (462)
                      ..+...=.+.|+-++|..+++++ . ..+|..+...++.+|++. +.+.|.
T Consensus       462 ~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~  511 (652)
T KOG2376|consen  462 REAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAE  511 (652)
T ss_pred             HHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHH
Confidence            44444445779999999999998 3 456888899999999987 455665

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=1.5e-06  Score=75.79  Aligned_cols=382  Identities=11%  Similarity=-0.013  Sum_probs=212.0

Q ss_pred             HHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh-hccCCChhhHHHHHHhh---cCCCcchHHHHHHh
Q 036356           17 LKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY-HLWSRTEWSAFGSFDGL---LSNEENEYGTALDC   92 (462)
Q Consensus        17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~   92 (462)
                      |.-+...+++..|..+++.-...+-+.        +.++-.|-.- +...|++++|+..+..+   ..++...+-.|.-+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EE--------E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc  100 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREE--------EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACC  100 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhh--------hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHH
Confidence            444555677777877777666544332        2344556666 78889999999999988   55666666666655


Q ss_pred             hcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcC-----------CCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356           93 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR-----------YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM  161 (462)
Q Consensus        93 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~-----------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  161 (462)
                      .--.|.+.+|.++-....+..+  ....+++.--|.+           ..-+..---+|.+..--.-.+++|+++|....
T Consensus       101 ~FyLg~Y~eA~~~~~ka~k~pL--~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL  178 (557)
T KOG3785|consen  101 KFYLGQYIEAKSIAEKAPKTPL--CIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVL  178 (557)
T ss_pred             HHHHHHHHHHHHHHhhCCCChH--HHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566777777776655443322  2222333333333           01111112233333333446777888877752


Q ss_pred             hhhhhhcCCCCCchHHHH-HHHHHHhcCCcccHHHHhhccCC--CCc-------------------------------c-
Q 036356          162 DYYIGKSEYRNNVIVNTV-LIDMYAKCGSVDLAPMFFDRTLD--KDV-------------------------------V-  206 (462)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~--~~~-------------------------------~-  206 (462)
                           ..  .|+-...|. +.-+|.+..-++-+.++++--.+  ||.                               . 
T Consensus       179 -----~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~  251 (557)
T KOG3785|consen  179 -----QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ  251 (557)
T ss_pred             -----hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc
Confidence                 11  112111121 22344555555544444432210  111                               0 


Q ss_pred             hHHHHHHHHHhCc-------hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHh-
Q 036356          207 MRSAMIVGYGLHE-------WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-  278 (462)
Q Consensus       207 ~~~~li~~~~~~~-------~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-  278 (462)
                      .|. .+.-+++++       +.|++++-.+.+.=...-..++--|.+.+++.+|..+..++.  -..|-......++.+ 
T Consensus       252 ~~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~aa  328 (557)
T KOG3785|consen  252 EYP-FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVFAA  328 (557)
T ss_pred             cch-hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHHHH
Confidence            011 122222222       666666666555111222344555678888888877665542  123333344444433 


Q ss_pred             hc------------------------CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHH
Q 036356          279 CR------------------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM  334 (462)
Q Consensus       279 ~~------------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~  334 (462)
                      .|                        ...++.--.++.+.+.-..++++++-++..     ++.-=...|...|| +.++
T Consensus       329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnS-----i~sYF~NdD~Fn~N-~AQA  402 (557)
T KOG3785|consen  329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNS-----IESYFTNDDDFNLN-LAQA  402 (557)
T ss_pred             hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHH-----HHHHhcCcchhhhH-HHHH
Confidence            22                        111122233444455555566666666655     22222223344444 6788


Q ss_pred             HHhcCCcchHHHHhccCCCC---CccchHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhH-HHHHHHHHHhcCChHH
Q 036356          335 YAKCGSVDLAPMFFDRTLDK---DVVMRSA-MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH-YARVVDLLARAGYSNH  409 (462)
Q Consensus       335 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~  409 (462)
                      ++..|.+.+|+++|-.+..|   |..+|.+ |.++|.+.++++.|++++-++..   +.+..+ ...+.+-|.+.+++--
T Consensus       403 k~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyy  479 (557)
T KOG3785|consen  403 KLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYY  479 (557)
T ss_pred             HHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888754   5667754 56888999999999887765543   333333 4455568999999988


Q ss_pred             HHHHHHhC-CCCCCHHHHH
Q 036356          410 AFKFIMNM-PIELRLSVRR  427 (462)
Q Consensus       410 A~~~~~~m-~~~p~~~~~~  427 (462)
                      |-+.|+.+ ...|++.-|.
T Consensus       480 aaKAFd~lE~lDP~pEnWe  498 (557)
T KOG3785|consen  480 AAKAFDELEILDPTPENWE  498 (557)
T ss_pred             HHHhhhHHHccCCCccccC
Confidence            88888888 5678877664

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.69  E-value=1.9e-05  Score=74.48  Aligned_cols=292  Identities=11%  Similarity=-0.006  Sum_probs=151.3

Q ss_pred             CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcC-CCCCchHHHHHH------HHHHhcCCcccHHHHhhccCCC-
Q 036356          132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE-YRNNVIVNTVLI------DMYAKCGSVDLAPMFFDRTLDK-  203 (462)
Q Consensus       132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~-  203 (462)
                      -....|..+..++.-.|+...|..+.++.     .... -.|+...|.-..      ....+.|.+++|.+.+...... 
T Consensus       141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef-----~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i  215 (700)
T KOG1156|consen  141 SQRASWIGFAVAQHLLGEYKMALEILEEF-----EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI  215 (700)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH
Confidence            34566888888888889999999998886     3332 345555443322      2345667777777777665432 


Q ss_pred             -CcchHH-HHHHHHHhCc--hHHHHHHHhhhc--CCcchHHHHHHhhc-CccchhhhH-HHHHHHHHhCCCcchHHHHHH
Q 036356          204 -DVVMRS-AMIVGYGLHE--WSAFGSFDGLLS--NEENEYGTALDCSC-DLEFLEQGK-IVHGFMIKLGLELESDLLISL  275 (462)
Q Consensus       204 -~~~~~~-~li~~~~~~~--~~a~~~~~~m~~--~~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l  275 (462)
                       |...+- +-...+.+.+  ++|..++..+..  ||..-|...+..+. +..+.-++. .+|....+.-           
T Consensus       216 ~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-----------  284 (700)
T KOG1156|consen  216 VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-----------  284 (700)
T ss_pred             HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-----------
Confidence             222221 1123344444  888888888877  77777766655444 222222222 4444443321           


Q ss_pred             HHhhcCCCCHhHHHHHHHHHHcCCChhHH-HHHhhHHHHHHHHhhCCCCchhHHH-------------HHHHHHHhcCCc
Q 036356          276 TAVCRYQPNVTLWNAMISGYAKNGYAEEA-VKLFPKWMDYYIGKSEYRNNVIVNT-------------VLIDMYAKCGSV  341 (462)
Q Consensus       276 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~p~~~~~~-------------~li~~~~~~g~~  341 (462)
                             |-...-..+--.........+. -.++..     +...|+.+--....             .++..|...-..
T Consensus       285 -------~r~e~p~Rlplsvl~~eel~~~vdkyL~~-----~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~  352 (700)
T KOG1156|consen  285 -------PRHECPRRLPLSVLNGEELKEIVDKYLRP-----LLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSG  352 (700)
T ss_pred             -------cccccchhccHHHhCcchhHHHHHHHHHH-----HhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhccc
Confidence                   1110000000001111111111 111222     23344433111111             111222211111


Q ss_pred             chHHHHhccC--CCCCccch--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356          342 DLAPMFFDRT--LDKDVVMR--SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMN  416 (462)
Q Consensus       342 ~~A~~~~~~~--~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~  416 (462)
                      +......+.-  ..|....|  -.++..|-+.|+++.|...++....  .+|+ ...|..-...+...|++++|..++++
T Consensus       353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~e  430 (700)
T KOG1156|consen  353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDE  430 (700)
T ss_pred             ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            1111111111  12333333  3567778888888888888888886  7777 55677777788888888888888888


Q ss_pred             C-CC-CCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcC
Q 036356          417 M-PI-ELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEG  453 (462)
Q Consensus       417 m-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  453 (462)
                      . .+ .||...-.--.+-..+.+..++|...+-.--+.|
T Consensus       431 a~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~  469 (700)
T KOG1156|consen  431 AQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG  469 (700)
T ss_pred             HHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence            7 22 3454444445555566677777766655544444

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.69  E-value=4.4e-06  Score=68.82  Aligned_cols=190  Identities=12%  Similarity=-0.063  Sum_probs=157.6

Q ss_pred             HHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHH
Q 036356          237 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI  316 (462)
Q Consensus       237 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  316 (462)
                      ...+.-.|.+.|+...|..-++..+++.                 +.+..+|..+...|-+.|+.+.|.+-|++.+    
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-----------------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl----   96 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-----------------PSYYLAHLVRAHYYQKLGENDLADESYRKAL----   96 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------cccHHHHHHHHHHHHHcCChhhHHHHHHHHH----
Confidence            4456677889999999999999999975                 2467889999999999999999999999843    


Q ss_pred             HhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC-CC----CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036356          317 GKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL-DK----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR  390 (462)
Q Consensus       317 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  390 (462)
                         ...| +..+.|....-+|..|++++|...|+... .|    -..+|..+..+..+.|+.+.|.+.|++..+  ..|+
T Consensus        97 ---sl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~  171 (250)
T COG3063          97 ---SLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQ  171 (250)
T ss_pred             ---hcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcC
Confidence               3445 35677777888999999999999999876 44    345888999999999999999999999998  7777


Q ss_pred             -HhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcC
Q 036356          391 -HQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEG  453 (462)
Q Consensus       391 -~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  453 (462)
                       ..+...+.....+.|++-.|...++..  +..++..+....++.-.+.|+...+- .+...+...
T Consensus       172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~-~Y~~qL~r~  236 (250)
T COG3063         172 FPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQ-RYQAQLQRL  236 (250)
T ss_pred             CChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHH-HHHHHHHHh
Confidence             678889999999999999999999998  45588888888888888999975554 444444443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.67  E-value=0.00014  Score=68.90  Aligned_cols=162  Identities=17%  Similarity=0.171  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc---hhHHHHHHHHHHhcCCcchHHHHhccCCC-C--------
Q 036356          287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN---VIVNTVLIDMYAKCGSVDLAPMFFDRTLD-K--------  354 (462)
Q Consensus       287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------  354 (462)
                      .|..+.+.|-..|+++.|..+|++.     .+..++--   ..+|..-..+=.+..+++.|.++.+...- |        
T Consensus       389 Lw~~faklYe~~~~l~~aRvifeka-----~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~y  463 (835)
T KOG2047|consen  389 LWVEFAKLYENNGDLDDARVIFEKA-----TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYY  463 (835)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHh-----hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhh
Confidence            4666666677777777777777662     22222111   22333333333345556666666654431 1        


Q ss_pred             ------------CccchHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036356          355 ------------DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI-EPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PI  419 (462)
Q Consensus       355 ------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~  419 (462)
                                  +...|+.+++.--..|-++....+++++.+..+ +|. ...|..++   -...-++++.+++++- .+
T Consensus       464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfL---Eeh~yfeesFk~YErgI~L  540 (835)
T KOG2047|consen  464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFL---EEHKYFEESFKAYERGISL  540 (835)
T ss_pred             cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---HhhHHHHHHHHHHHcCCcc
Confidence                        223455555555556666667777777766532 232 22333332   3445577788888775 21


Q ss_pred             --CCC-HHHHHHHHHHHHcc---CChHHHHHHHHhhhhcCCCCC
Q 036356          420 --ELR-LSVRRALLSAWKIP---MQQWENMLQTIRGIDEGEKTD  457 (462)
Q Consensus       420 --~p~-~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~pd  457 (462)
                        -|+ ...|++.+..+.+.   .+.+.|..++++.++ |+.|.
T Consensus       541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~  583 (835)
T KOG2047|consen  541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE  583 (835)
T ss_pred             CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence              133 33677666555433   455667766666555 76664

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.65  E-value=3.2e-06  Score=76.38  Aligned_cols=226  Identities=10%  Similarity=-0.003  Sum_probs=135.6

Q ss_pred             CCChhHHHHHHHHhhhhhhhhcCCCCC--chHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHH
Q 036356          147 NGYAEEAVKLFPKWMDYYIGKSEYRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG  224 (462)
Q Consensus       147 ~g~~~~a~~~~~~m~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~  224 (462)
                      .+..+.++.-+.++    +......|+  ...|..+...|.+.|+.++|...|++..+.++                   
T Consensus        39 ~~~~e~~i~~~~~~----l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-------------------   95 (296)
T PRK11189         39 TLQQEVILARLNQI----LASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-------------------   95 (296)
T ss_pred             chHHHHHHHHHHHH----HccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-------------------
Confidence            34566666666665    122222222  34566666777777888887777766553222                   


Q ss_pred             HHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHH
Q 036356          225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEA  304 (462)
Q Consensus       225 ~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a  304 (462)
                             .+...|+.+...+...|++++|...|+...+..                 +-+...|..+..++...|++++|
T Consensus        96 -------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-----------------P~~~~a~~~lg~~l~~~g~~~eA  151 (296)
T PRK11189         96 -------DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-----------------PTYNYAYLNRGIALYYGGRYELA  151 (296)
T ss_pred             -------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHCCCHHHH
Confidence                   223456667777788888888888888887753                 12456777777788888888888


Q ss_pred             HHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-CCccchHHHHHHHHhcCChHHHHHHHHHHH
Q 036356          305 VKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMTVGYGLHGLGEEGWVLFHHIR  383 (462)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  383 (462)
                      .+.|++.+     .  ..|+..........+...++.++|...|++... .+...|.. .......|+...+ +.+..+.
T Consensus       152 ~~~~~~al-----~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~  222 (296)
T PRK11189        152 QDDLLAFY-----Q--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVEFYLGKISEE-TLMERLK  222 (296)
T ss_pred             HHHHHHHH-----H--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHHHHccCCCHH-HHHHHHH
Confidence            88888743     2  234332222222233456778888888865432 22233332 2233335555444 3445544


Q ss_pred             HC-C----CCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHH
Q 036356          384 KH-G----IEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIE-LRLSVRRA  428 (462)
Q Consensus       384 ~~-g----~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~  428 (462)
                      +. .    +.|+ ...|..+...+.+.|++++|...|++. ... ||..-+..
T Consensus       223 ~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~  275 (296)
T PRK11189        223 AGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY  275 (296)
T ss_pred             hcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence            32 1    1222 357888888888999999999999887 333 46555544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.61  E-value=6e-07  Score=77.37  Aligned_cols=220  Identities=14%  Similarity=0.022  Sum_probs=175.2

Q ss_pred             HHHHHHHHhcCCcccHHHHhhccC--CCCcchHHHHHHHHHhCc--hHHHHHHHhhhc--CCcchHHH-HHHhhcCccch
Q 036356          178 TVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS--NEENEYGT-ALDCSCDLEFL  250 (462)
Q Consensus       178 ~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~--~~~~~~~~-ll~~~~~~~~~  250 (462)
                      +-+-++|.+.|-+.+|++.|+.-.  .|-+.||-.+-+.|.+-+  +.|+.+|.+-..  |-.+||.. +.+.+-..++.
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~  306 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ  306 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence            668889999999999999998654  467778888888998888  899999998887  77666654 55667778899


Q ss_pred             hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHH
Q 036356          251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV  330 (462)
Q Consensus       251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  330 (462)
                      ++|.++|+...+..                 ..++....++...|.-.+++|-|+.++++     +...|+. +...|+.
T Consensus       307 ~~a~~lYk~vlk~~-----------------~~nvEaiAcia~~yfY~~~PE~AlryYRR-----iLqmG~~-speLf~N  363 (478)
T KOG1129|consen  307 EDALQLYKLVLKLH-----------------PINVEAIACIAVGYFYDNNPEMALRYYRR-----ILQMGAQ-SPELFCN  363 (478)
T ss_pred             HHHHHHHHHHHhcC-----------------CccceeeeeeeeccccCCChHHHHHHHHH-----HHHhcCC-ChHHHhh
Confidence            99999999988864                 25777777888888889999999999999     5566763 5667777


Q ss_pred             HHHHHHhcCCcchHHHHhccCC----CCC--ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHh
Q 036356          331 LIDMYAKCGSVDLAPMFFDRTL----DKD--VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLAR  403 (462)
Q Consensus       331 li~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~  403 (462)
                      +.-+|.-.++++-+..-|++..    +|+  ...|-.|-......||+..|.+.|+-...  ..|+ ...++-|.-.-.+
T Consensus       364 igLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r  441 (478)
T KOG1129|consen  364 IGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAAR  441 (478)
T ss_pred             HHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhh
Confidence            7778888888988887777654    343  34677777788888999999999998887  4455 6788888888889


Q ss_pred             cCChHHHHHHHHhC-CCCCC
Q 036356          404 AGYSNHAFKFIMNM-PIELR  422 (462)
Q Consensus       404 ~g~~~~A~~~~~~m-~~~p~  422 (462)
                      .|++++|..++... ...|+
T Consensus       442 ~G~i~~Arsll~~A~s~~P~  461 (478)
T KOG1129|consen  442 SGDILGARSLLNAAKSVMPD  461 (478)
T ss_pred             cCchHHHHHHHHHhhhhCcc
Confidence            99999999999887 44454

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.59  E-value=2.7e-06  Score=81.03  Aligned_cols=177  Identities=16%  Similarity=0.132  Sum_probs=115.8

Q ss_pred             hHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc
Q 036356          220 WSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK  297 (462)
Q Consensus       220 ~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~  297 (462)
                      .+|+.+++.+..  ....-|..+...|+..|+++.|+++|-+.                         ..++--|..|.+
T Consensus       749 ~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~-------------------------~~~~dai~my~k  803 (1636)
T KOG3616|consen  749 KKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA-------------------------DLFKDAIDMYGK  803 (1636)
T ss_pred             hhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc-------------------------chhHHHHHHHhc
Confidence            445555554444  23334666667777777777777766432                         124455667777


Q ss_pred             CCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHH
Q 036356          298 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV  377 (462)
Q Consensus       298 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  377 (462)
                      .|+++.|.++-.+       -.|....+..|-+-..-+-+.|++.+|.+++-.+..|+.     -|..|-+.|..+..++
T Consensus       804 ~~kw~da~kla~e-------~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmir  871 (1636)
T KOG3616|consen  804 AGKWEDAFKLAEE-------CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIR  871 (1636)
T ss_pred             cccHHHHHHHHHH-------hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHH
Confidence            7777777777644       345555666676666667777888888888777776654     3677778888777777


Q ss_pred             HHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 036356          378 LFHHIRKHGIEPR--HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENML  444 (462)
Q Consensus       378 ~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~  444 (462)
                      +.++-.     |+  ..|...+..-|-..|++..|..-|-+.+      -|.+-+..|..++.+++|..
T Consensus       872 lv~k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayr  929 (1636)
T KOG3616|consen  872 LVEKHH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYR  929 (1636)
T ss_pred             HHHHhC-----hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHH
Confidence            665533     44  4566677777888888888888777763      25555666666666666653

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.59  E-value=6.2e-05  Score=72.58  Aligned_cols=330  Identities=11%  Similarity=0.050  Sum_probs=193.5

Q ss_pred             cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 036356           79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP  158 (462)
Q Consensus        79 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  158 (462)
                      +..|...|..+--++.+.|+++.+-+.|++....-+                 -....|..+-..|.-.|.-..|+.+++
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-----------------~~~e~w~~~als~saag~~s~Av~ll~  381 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-----------------GEHERWYQLALSYSAAGSDSKAVNLLR  381 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-----------------hhHHHHHHHHHHHHHhccchHHHHHHH
Confidence            556777788888888888888888888888876554                 456678888888888888888888887


Q ss_pred             HhhhhhhhhcCCCCCchHHHHHHHHHHh-cCCcccHHHHhhccCC--------CCcchHHHHHHHHHhCc----------
Q 036356          159 KWMDYYIGKSEYRNNVIVNTVLIDMYAK-CGSVDLAPMFFDRTLD--------KDVVMRSAMIVGYGLHE----------  219 (462)
Q Consensus       159 ~m~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~~----------  219 (462)
                      +-.    ....-++|+..+-..-..|.+ .+.+++++.+-.+...        .....|-.+.-+|...-          
T Consensus       382 ~~~----~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~  457 (799)
T KOG4162|consen  382 ESL----KKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERD  457 (799)
T ss_pred             hhc----ccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHH
Confidence            741    111112234444333333333 3555555444433221        12333433333333221          


Q ss_pred             ---hHHHHHHHhhhc-----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHH
Q 036356          220 ---WSAFGSFDGLLS-----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM  291 (462)
Q Consensus       220 ---~~a~~~~~~m~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l  291 (462)
                         .++++.+++..+     |+...|..+  -|+-.++++.|.+...+..+.+-..+...                |.-+
T Consensus       458 ~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~----------------whLL  519 (799)
T KOG4162|consen  458 ALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKA----------------WHLL  519 (799)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHH----------------HHHH
Confidence               556666666655     333333222  34456677777777777777654433333                3333


Q ss_pred             HHHHHcCCChhHHHHHhhHHHHHH--------------------------------------------------------
Q 036356          292 ISGYAKNGYAEEAVKLFPKWMDYY--------------------------------------------------------  315 (462)
Q Consensus       292 i~~~~~~~~~~~a~~~~~~~~~~~--------------------------------------------------------  315 (462)
                      .-.+.-.+++.+|+.+.+..+++.                                                        
T Consensus       520 ALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l  599 (799)
T KOG4162|consen  520 ALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGL  599 (799)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccc
Confidence            333333333333333321111100                                                        


Q ss_pred             ------------------------H---------HhhCCCCc--------hhHHHHHHHHHHhcCCcchHHHHhccCCCC
Q 036356          316 ------------------------I---------GKSEYRNN--------VIVNTVLIDMYAKCGSVDLAPMFFDRTLDK  354 (462)
Q Consensus       316 ------------------------~---------~~~~~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  354 (462)
                                              .         ......|.        ...|......+.+.+..++|...+.+...-
T Consensus       600 ~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~  679 (799)
T KOG4162|consen  600 HLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI  679 (799)
T ss_pred             ccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Confidence                                    0         00001111        112233344455555556665555444322


Q ss_pred             ---CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-CHHHH
Q 036356          355 ---DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFK--FIMNM-PIEL-RLSVR  426 (462)
Q Consensus       355 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~  426 (462)
                         ....|......+...|..++|.+.|.....  +.|+ ..+..++...+.+.|+..-|..  ++.++ .+.| +...|
T Consensus       680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW  757 (799)
T KOG4162|consen  680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW  757 (799)
T ss_pred             chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence               223344445566677888999999888887  8898 6788899999999999888888  88887 6666 67799


Q ss_pred             HHHHHHHHccCChHHHHHHHHhh
Q 036356          427 RALLSAWKIPMQQWENMLQTIRG  449 (462)
Q Consensus       427 ~~l~~~~~~~~~~~~a~~~~~~~  449 (462)
                      ..+...+...|+.++|.+-+.-.
T Consensus       758 ~~LG~v~k~~Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  758 YYLGEVFKKLGDSKQAAECFQAA  780 (799)
T ss_pred             HHHHHHHHHccchHHHHHHHHHH
Confidence            99999999999999999877654

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.57  E-value=1.4e-05  Score=72.24  Aligned_cols=214  Identities=12%  Similarity=-0.088  Sum_probs=137.9

Q ss_pred             cchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC--eeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCc
Q 036356           97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN--VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV  174 (462)
Q Consensus        97 ~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  174 (462)
                      +..+.+..-+.++.....               ..|+  ...|..+...+...|+.++|...|++.     .+. -+.+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~---------------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~A-----l~l-~P~~~   98 (296)
T PRK11189         40 LQQEVILARLNQILASRD---------------LTDEERAQLHYERGVLYDSLGLRALARNDFSQA-----LAL-RPDMA   98 (296)
T ss_pred             hHHHHHHHHHHHHHcccc---------------CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHc-CCCCH
Confidence            455666677777765432               0222  345777888899999999999999885     222 23357


Q ss_pred             hHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhH
Q 036356          175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGK  254 (462)
Q Consensus       175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~  254 (462)
                      ..|+.+...+...|++++|...|++..+.++.                          +..++..+..++...|++++|.
T Consensus        99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~--------------------------~~~a~~~lg~~l~~~g~~~eA~  152 (296)
T PRK11189         99 DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT--------------------------YNYAYLNRGIALYYGGRYELAQ  152 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHCCCHHHHH
Confidence            88999999999999999999999887643321                          1234455556666778888888


Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHH
Q 036356          255 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM  334 (462)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~  334 (462)
                      +.++...+..                  |+..........+...++.++|...|.+..     . ...|+...+ .  ..
T Consensus       153 ~~~~~al~~~------------------P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~-----~-~~~~~~~~~-~--~~  205 (296)
T PRK11189        153 DDLLAFYQDD------------------PNDPYRALWLYLAESKLDPKQAKENLKQRY-----E-KLDKEQWGW-N--IV  205 (296)
T ss_pred             HHHHHHHHhC------------------CCCHHHHHHHHHHHccCCHHHHHHHHHHHH-----h-hCCccccHH-H--HH
Confidence            8888887754                  332211122222345678889988886632     1 122332222 1  22


Q ss_pred             HHhcCCcchHHHHhccCC---C-------CCccchHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036356          335 YAKCGSVDLAPMFFDRTL---D-------KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH  385 (462)
Q Consensus       335 ~~~~g~~~~A~~~~~~~~---~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  385 (462)
                      ....|+.+.+ ..++.+.   +       .....|..+...+.+.|++++|...|++..+.
T Consensus       206 ~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        206 EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3335565544 2332222   1       13357888999999999999999999999983

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.55  E-value=9.7e-06  Score=66.84  Aligned_cols=203  Identities=14%  Similarity=0.040  Sum_probs=152.0

Q ss_pred             HHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHH
Q 036356          178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH  257 (462)
Q Consensus       178 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~  257 (462)
                      .-|.-.|...||...|..-+++..+.|+..                          ..++..+...|.+.|..+.|.+-|
T Consensus        39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~--------------------------~~a~~~~A~~Yq~~Ge~~~A~e~Y   92 (250)
T COG3063          39 LQLALGYLQQGDYAQAKKNLEKALEHDPSY--------------------------YLAHLVRAHYYQKLGENDLADESY   92 (250)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCccc--------------------------HHHHHHHHHHHHHcCChhhHHHHH
Confidence            345555666666666666666665544432                          334666777778888899999999


Q ss_pred             HHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh
Q 036356          258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK  337 (462)
Q Consensus       258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~  337 (462)
                      +...+..                 +-+....|..-.-+|..|++++|...|.+.+    ......-...+|..+.-+..+
T Consensus        93 rkAlsl~-----------------p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al----~~P~Y~~~s~t~eN~G~Cal~  151 (250)
T COG3063          93 RKALSLA-----------------PNNGDVLNNYGAFLCAQGRPEEAMQQFERAL----ADPAYGEPSDTLENLGLCALK  151 (250)
T ss_pred             HHHHhcC-----------------CCccchhhhhhHHHHhCCChHHHHHHHHHHH----hCCCCCCcchhhhhhHHHHhh
Confidence            8888764                 2466778888888999999999999999853    233333345678888888889


Q ss_pred             cCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 036356          338 CGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFI  414 (462)
Q Consensus       338 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  414 (462)
                      .|+.+.|...|++..+  | ...+.-.+.....+.|++-.|..+++.....+. ++..+....|..-.+.|+-+.|.+.=
T Consensus       152 ~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~  230 (250)
T COG3063         152 AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQ  230 (250)
T ss_pred             cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence            9999999999998774  3 344666788888899999999999999888765 99999999999989999999888776


Q ss_pred             HhC-CCCCCHHHHHH
Q 036356          415 MNM-PIELRLSVRRA  428 (462)
Q Consensus       415 ~~m-~~~p~~~~~~~  428 (462)
                      ..+ ..-|...-+..
T Consensus       231 ~qL~r~fP~s~e~q~  245 (250)
T COG3063         231 AQLQRLFPYSEEYQT  245 (250)
T ss_pred             HHHHHhCCCcHHHHh
Confidence            665 33455554443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.55  E-value=0.00011  Score=68.83  Aligned_cols=298  Identities=10%  Similarity=-0.076  Sum_probs=142.2

Q ss_pred             hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeee-HHHHHHHHHhCCChhHHHHHHHHhhhh
Q 036356           85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL-RNAMISGYAKNGYAEEAVKLFPKWMDY  163 (462)
Q Consensus        85 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~  163 (462)
                      .|..+...+...|+.+.+.+.+....+...               ..++... .......+...|++++|.+++++.   
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~---   69 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALA---------------ARATERERAHVEALSAWIAGDLPKALALLEQL---   69 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhc---------------cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence            455555556666777776666666655433               0122111 111223456678888888888875   


Q ss_pred             hhhhcCCCCCchHHHHHHHHHHh----cCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHH
Q 036356          164 YIGKSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGT  239 (462)
Q Consensus       164 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~  239 (462)
                        ... .+.|...+.. ...+..    .+..+.+.+.++.....+...                          ......
T Consensus        70 --l~~-~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------------~~~~~~  119 (355)
T cd05804          70 --LDD-YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY--------------------------WYLLGM  119 (355)
T ss_pred             --HHH-CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc--------------------------HHHHHH
Confidence              222 2223333332 212222    344444444444321111111                          111223


Q ss_pred             HHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh
Q 036356          240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS  319 (462)
Q Consensus       240 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  319 (462)
                      +...+...|++++|...++...+...                 .+...+..+...+...|++++|...+.+.+.    ..
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~~~p-----------------~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~----~~  178 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALELNP-----------------DDAWAVHAVAHVLEMQGRFKEGIAFMESWRD----TW  178 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCC-----------------CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh----cc
Confidence            33445566777777777777766531                 3445566666667777777777777766321    00


Q ss_pred             CCCCc--hhHHHHHHHHHHhcCCcchHHHHhccCCCCCc--cchH------HHHHHHHhcCChHHHHHH--HHHHHHCCC
Q 036356          320 EYRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV--VMRS------AMTVGYGLHGLGEEGWVL--FHHIRKHGI  387 (462)
Q Consensus       320 ~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~------~li~~~~~~~~~~~a~~~--~~~m~~~g~  387 (462)
                      ...|+  ...|..+...+...|+.++|..++++...++.  ....      .++.-+...|..+.+.++  +........
T Consensus       179 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~  258 (355)
T cd05804         179 DCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHF  258 (355)
T ss_pred             CCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc
Confidence            01122  22344566667777777777777776542211  1111      222223333433322222  111111000


Q ss_pred             --CCCHhHHHHHHHHHHhcCChHHHHHHHHhC--CCCC---------CHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356          388 --EPRHQHYARVVDLLARAGYSNHAFKFIMNM--PIEL---------RLSVRRALLSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       388 --~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                        ............++...|+.++|.++++.+  ....         .....-....++...|+..+|+..+.+.+.
T Consensus       259 ~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~  335 (355)
T cd05804         259 PDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD  335 (355)
T ss_pred             CcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              001111124555666777777777777666  1111         111222333444566777777766665543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.55  E-value=2.7e-05  Score=73.48  Aligned_cols=359  Identities=13%  Similarity=0.065  Sum_probs=215.9

Q ss_pred             hccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCC-Ccch--------
Q 036356           20 CVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSN-EENE--------   85 (462)
Q Consensus        20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~-~~~~--------   85 (462)
                      +...|+.++|....+.-.+..+           .+.+.|+.+   +....++++|++.|...  ..| |...        
T Consensus        51 L~~lg~~~ea~~~vr~glr~d~-----------~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ  119 (700)
T KOG1156|consen   51 LNCLGKKEEAYELVRLGLRNDL-----------KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQ  119 (700)
T ss_pred             hhcccchHHHHHHHHHHhccCc-----------ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            3455677777777776666554           467777777   55566777777777766  222 2333        


Q ss_pred             --------------------------HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHH
Q 036356           86 --------------------------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNA  139 (462)
Q Consensus        86 --------------------------~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~  139 (462)
                                                |..+..+.--.|+...|..+.++..+...               ..|+...|.-
T Consensus       120 ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~---------------~~~s~~~~e~  184 (700)
T KOG1156|consen  120 IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN---------------TSPSKEDYEH  184 (700)
T ss_pred             HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------cCCCHHHHHH
Confidence                                      33333333334444444444444443321               1355555543


Q ss_pred             HH------HHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--CCcchHHH-
Q 036356          140 MI------SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSA-  210 (462)
Q Consensus       140 li------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~-  210 (462)
                      ..      ....++|..+.|++.+..-      +..+.-....--+-.+.+.+.+++++|..++..+..  ||-.-|+. 
T Consensus       185 se~~Ly~n~i~~E~g~~q~ale~L~~~------e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~  258 (700)
T KOG1156|consen  185 SELLLYQNQILIEAGSLQKALEHLLDN------EKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEG  258 (700)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHhh------hhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHH
Confidence            32      3456789999999988873      344433344445566778999999999999998875  44444444 


Q ss_pred             HHHHHH--hCchHHH-HHHHhhhc--CCcch-HHHHHHhhcCccchhhhHHHHHHHHHhCCCcchH-------------H
Q 036356          211 MIVGYG--LHEWSAF-GSFDGLLS--NEENE-YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD-------------L  271 (462)
Q Consensus       211 li~~~~--~~~~~a~-~~~~~m~~--~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~  271 (462)
                      +..++.  ..+-+++ .+|....+  |.... -..=++........+....++..+.+.|+++--.             +
T Consensus       259 l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~  338 (700)
T KOG1156|consen  259 LEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAF  338 (700)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHH
Confidence            344443  2223333 56665555  11110 0011111112333344445666666666654111             1


Q ss_pred             HHHHHHh-------hc----------CCCCHhHHH--HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHH
Q 036356          272 LISLTAV-------CR----------YQPNVTLWN--AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVL  331 (462)
Q Consensus       272 ~~~l~~~-------~~----------~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l  331 (462)
                      ...++..       +|          -+|....|.  .++..|-+.|+++.|+.+++..+       +..|+ +..|..=
T Consensus       339 le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI-------dHTPTliEly~~K  411 (700)
T KOG1156|consen  339 LEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI-------DHTPTLIELYLVK  411 (700)
T ss_pred             HHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh-------ccCchHHHHHHHH
Confidence            1112222       11          256665555  46778999999999999998843       45666 3455555


Q ss_pred             HHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--C----HhHHHHH--HHH
Q 036356          332 IDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP--R----HQHYARV--VDL  400 (462)
Q Consensus       332 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~----~~~~~~l--i~~  400 (462)
                      .+.+...|+++.|..++++..+   +|...-+.-..-..++++.++|.++.....+.|...  +    ...|-.+  ..+
T Consensus       412 aRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~a  491 (700)
T KOG1156|consen  412 ARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEA  491 (700)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHH
Confidence            6889999999999999998774   565555566667778999999999999999887511  1    1223333  346


Q ss_pred             HHhcCChHHHHHHHHhC
Q 036356          401 LARAGYSNHAFKFIMNM  417 (462)
Q Consensus       401 ~~~~g~~~~A~~~~~~m  417 (462)
                      |.+.|++-.|++=|..+
T Consensus       492 y~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  492 YLRQNKLGLALKKFHEI  508 (700)
T ss_pred             HHHHHHHHHHHHHHhhH
Confidence            78888888887766555

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=4.8e-05  Score=68.09  Aligned_cols=298  Identities=11%  Similarity=0.009  Sum_probs=192.0

Q ss_pred             cCCCcchHHHHHHhhcC--ccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHH
Q 036356           79 LSNEENEYGTALDCSCD--LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKL  156 (462)
Q Consensus        79 ~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  156 (462)
                      .+|+..+...-+.++++  .++-..+.+.+-.+.....               .+-|+.....+...+...|+.++|+..
T Consensus       190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~---------------lr~NvhLl~~lak~~~~~Gdn~~a~~~  254 (564)
T KOG1174|consen  190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTT---------------LRCNEHLMMALGKCLYYNGDYFQAEDI  254 (564)
T ss_pred             cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhcc---------------CCccHHHHHHHhhhhhhhcCchHHHHH
Confidence            44444455555555543  3344444444444443332               034666677888888888999999888


Q ss_pred             HHHhhhhhhhhcCCCCCch-HHHHHHHHHHhcCCcccHHHHhhccCCCC---cchHHHHHHH-HHhCc-hHHHHHHHhhh
Q 036356          157 FPKWMDYYIGKSEYRNNVI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKD---VVMRSAMIVG-YGLHE-WSAFGSFDGLL  230 (462)
Q Consensus       157 ~~~m~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~-~~~~~-~~a~~~~~~m~  230 (462)
                      |++.       ..+.|+.. ....-.-.+.+.|+.+....+...+-..+   ...|-.-... |-+.. +.|+.+-++-.
T Consensus       255 Fe~~-------~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I  327 (564)
T KOG1174|consen  255 FSST-------LCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCI  327 (564)
T ss_pred             HHHH-------hhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence            8884       22334322 22222233456677777766666554332   2223222222 22333 77888877777


Q ss_pred             cCC---cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHH
Q 036356          231 SNE---ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKL  307 (462)
Q Consensus       231 ~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  307 (462)
                      +.+   ...|-.--..+...++.++|.--|.......                 +-+..+|.-++..|...|++.+|.-+
T Consensus       328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-----------------p~rL~~Y~GL~hsYLA~~~~kEA~~~  390 (564)
T KOG1174|consen  328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-----------------PYRLEIYRGLFHSYLAQKRFKEANAL  390 (564)
T ss_pred             ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-----------------hhhHHHHHHHHHHHHhhchHHHHHHH
Confidence            732   3333333456778899999999998887653                 24788999999999999999999887


Q ss_pred             hhHHHHHHHHhhCCCCchhHHHHHH-HHHHh-cCCcchHHHHhccCCC--CCc-cchHHHHHHHHhcCChHHHHHHHHHH
Q 036356          308 FPKWMDYYIGKSEYRNNVIVNTVLI-DMYAK-CGSVDLAPMFFDRTLD--KDV-VMRSAMTVGYGLHGLGEEGWVLFHHI  382 (462)
Q Consensus       308 ~~~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m  382 (462)
                      -...+    ..  ...+..+...+. .++.- ..--++|.+++++-..  |+- ..-+.+...+...|..+.++.++++-
T Consensus       391 An~~~----~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~  464 (564)
T KOG1174|consen  391 ANWTI----RL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH  464 (564)
T ss_pred             HHHHH----HH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence            76642    11  222334443331 22222 2224788999988763  442 24566778888999999999999998


Q ss_pred             HHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036356          383 RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRL  423 (462)
Q Consensus       383 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~  423 (462)
                      ..  ..||....+.|.+.+...+.+.+|++.|... .+.|+.
T Consensus       465 L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~  504 (564)
T KOG1174|consen  465 LI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS  504 (564)
T ss_pred             Hh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence            88  8899999999999999999999999998887 666644

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.51  E-value=2.1e-05  Score=75.19  Aligned_cols=220  Identities=15%  Similarity=0.072  Sum_probs=163.1

Q ss_pred             HHHHHHhcCCcccHHHHhhccCCCCcch--HHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHH
Q 036356          180 LIDMYAKCGSVDLAPMFFDRTLDKDVVM--RSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKI  255 (462)
Q Consensus       180 li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~  255 (462)
                      .+.+.....+|.+|+.+++.+++.++.+  |..+...|+..|  +.|.++|-+.     ..++-.|..|.+.|+|+.|.+
T Consensus       738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~k  812 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFK  812 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHH
Confidence            4556667789999999999888655443  566667888888  8899988765     456777889999999999999


Q ss_pred             HHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHH
Q 036356          256 VHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY  335 (462)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~  335 (462)
                      +-.+...  .                ......|-+-..-+-+.|++.+|++++-.     +   | .|+     ..|.+|
T Consensus       813 la~e~~~--~----------------e~t~~~yiakaedldehgkf~eaeqlyit-----i---~-~p~-----~aiqmy  860 (1636)
T KOG3616|consen  813 LAEECHG--P----------------EATISLYIAKAEDLDEHGKFAEAEQLYIT-----I---G-EPD-----KAIQMY  860 (1636)
T ss_pred             HHHHhcC--c----------------hhHHHHHHHhHHhHHhhcchhhhhheeEE-----c---c-Cch-----HHHHHH
Confidence            8766542  1                23445566666778889999999999865     1   1 344     347889


Q ss_pred             HhcCCcchHHHHhccCC-CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 036356          336 AKCGSVDLAPMFFDRTL-DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFI  414 (462)
Q Consensus       336 ~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  414 (462)
                      -+.|..+...++.++-. +.-..|.-.+..-|-..|+...|.+-|-+..         -|.+-+++|-..+.|++|.++-
T Consensus       861 dk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria  931 (1636)
T KOG3616|consen  861 DKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA  931 (1636)
T ss_pred             HhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence            99999999999887654 2234466678888889999999988776554         3677889999999999999998


Q ss_pred             HhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356          415 MNMPIELRLSVRRALLSAWKIPMQQWENMLQTIR  448 (462)
Q Consensus       415 ~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  448 (462)
                      +.-| ..+..--..++.+-..-|+  .|+..+.+
T Consensus       932 kteg-g~n~~k~v~flwaksiggd--aavkllnk  962 (1636)
T KOG3616|consen  932 KTEG-GANAEKHVAFLWAKSIGGD--AAVKLLNK  962 (1636)
T ss_pred             hccc-cccHHHHHHHHHHHhhCcH--HHHHHHHh
Confidence            8774 2455555566676666664  56666654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.50  E-value=1e-05  Score=72.22  Aligned_cols=138  Identities=12%  Similarity=0.072  Sum_probs=83.8

Q ss_pred             HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCc-cchHHHHHHHHh----
Q 036356          294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV-VMRSAMTVGYGL----  368 (462)
Q Consensus       294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~----  368 (462)
                      .+...|++++|++++.+         +  .+.......+..|.+.++++.|.+.++.|.+.+. .+...|..++..    
T Consensus       111 i~~~~~~~~~AL~~l~~---------~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g  179 (290)
T PF04733_consen  111 ILFHEGDYEEALKLLHK---------G--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG  179 (290)
T ss_dssp             HHCCCCHHHHHHCCCTT---------T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHc---------c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC
Confidence            45566777777777765         2  3455556667777778888888887777765322 223333333322    


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHH
Q 036356          369 HGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENM  443 (462)
Q Consensus       369 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~  443 (462)
                      .+.+.+|..+|+++.+ ...++..+.+.+..+....|++++|.+++++. ...| ++.+...++-.....|+..++.
T Consensus       180 ~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~  255 (290)
T PF04733_consen  180 GEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA  255 (290)
T ss_dssp             TTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred             chhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence            2357788888888655 34566777777777778888888888877775 3333 4445556666666666664443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=0.00021  Score=71.06  Aligned_cols=299  Identities=14%  Similarity=0.043  Sum_probs=183.4

Q ss_pred             CCceeehhh-hccCCChhhHHHHHHhh-cCCCcc-----hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHh
Q 036356           53 RTIVFLDLY-HLWSRTEWSAFGSFDGL-LSNEEN-----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT  125 (462)
Q Consensus        53 ~~~~~~~~~-~~~~~~~~~A~~~~~~m-~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~  125 (462)
                      |..++-..- +...+-+.+-+++++++ ..|+..     .-|.||-...+. +..+..+..+++-..+.           
T Consensus       984 Pe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa----------- 1051 (1666)
T KOG0985|consen  984 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA----------- 1051 (1666)
T ss_pred             hHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-----------
Confidence            444444444 88888888899999988 333333     334444443333 34556666666555443           


Q ss_pred             hhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCc
Q 036356          126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV  205 (462)
Q Consensus       126 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  205 (462)
                            |+      +......++-+++|..+|++.          ..+....+.||.   ..++++.|.++-++..+|  
T Consensus      1052 ------~~------ia~iai~~~LyEEAF~ifkkf----------~~n~~A~~VLie---~i~~ldRA~efAe~~n~p-- 1104 (1666)
T KOG0985|consen 1052 ------PD------IAEIAIENQLYEEAFAIFKKF----------DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP-- 1104 (1666)
T ss_pred             ------hh------HHHHHhhhhHHHHHHHHHHHh----------cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--
Confidence                  43      355667788899999999884          445555555554   457888898888887766  


Q ss_pred             chHHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCC
Q 036356          206 VMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP  283 (462)
Q Consensus       206 ~~~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  283 (462)
                      ..|+.+..+-.+.+  .+|++-|-+.  .|...|..++..+.+.|.+++-.+.+....+...+|.               
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--------------- 1167 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--------------- 1167 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc---------------
Confidence            46899999988888  8888877665  6778899999999999999999999998888776533               


Q ss_pred             CHhHHHHHHHHHHcCCChhHHHHHhhH------------HHHHHHHh--hCCCCchhHHHHHHHHHHhcCCcchHHHHhc
Q 036356          284 NVTLWNAMISGYAKNGYAEEAVKLFPK------------WMDYYIGK--SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD  349 (462)
Q Consensus       284 ~~~~~~~li~~~~~~~~~~~a~~~~~~------------~~~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  349 (462)
                       +  =+.+|-+|++.+++.+-++...-            .+++.|-+  .-+-.++..|..|...+...|+++.|...-+
T Consensus      1168 -i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1168 -I--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred             -c--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence             2  23566677777777765555411            00000000  0000122334444444444444444443332


Q ss_pred             cCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       350 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +.  .+..+|-.+-.+|...+.+..|     .|...++-....-..-|+.-|-..|-+++.+.+++..
T Consensus      1245 KA--ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1245 KA--NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred             hc--cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence            22  3455666666666555444332     2222233334455666777777777777777776654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.46  E-value=0.00098  Score=63.37  Aligned_cols=382  Identities=13%  Similarity=0.090  Sum_probs=231.9

Q ss_pred             ceeehhh---hccCCChhhHHHHHHhhcCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCc-----chhH----HH
Q 036356           55 IVFLDLY---HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL-----ESDL----LI  122 (462)
Q Consensus        55 ~~~~~~~---~~~~~~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-----~~~~----l~  122 (462)
                      ...|.-.   ...++-++-++.+++...+.++..-+--|..+++.+++++|.+.+...+....-+     +...    +.
T Consensus       138 ~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elc  217 (835)
T KOG2047|consen  138 DRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELC  217 (835)
T ss_pred             ccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHH
Confidence            3455544   6667778899999998855566667888888999999999998888876443200     0000    22


Q ss_pred             HHhhhcC-----------------CCCCe--eeHHHHHHHHHhCCChhHHHHHHHHhh----------------------
Q 036356          123 SLTAVCR-----------------YQPNV--TLRNAMISGYAKNGYAEEAVKLFPKWM----------------------  161 (462)
Q Consensus       123 ~~~~~~~-----------------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~----------------------  161 (462)
                      +...++.                 .-+|.  ..|++|.+-|.+.|++++|..+|++-.                      
T Consensus       218 dlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~  297 (835)
T KOG2047|consen  218 DLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEES  297 (835)
T ss_pred             HHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHH
Confidence            2222222                 23343  458999999999999999999988754                      


Q ss_pred             -------------------------------------------------------------------------hhhhhhc
Q 036356          162 -------------------------------------------------------------------------DYYIGKS  168 (462)
Q Consensus       162 -------------------------------------------------------------------------~~~~~~~  168 (462)
                                                                                               ...++  
T Consensus       298 ~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~--  375 (835)
T KOG2047|consen  298 CVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVK--  375 (835)
T ss_pred             HHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHH--
Confidence                                                                                     00000  


Q ss_pred             CCCCC------chHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHH-------hC-c-hHHHHHHHhhhc-C
Q 036356          169 EYRNN------VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-------LH-E-WSAFGSFDGLLS-N  232 (462)
Q Consensus       169 ~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~-------~~-~-~~a~~~~~~m~~-~  232 (462)
                      .+.|.      ...|..+.+.|-..|+++.|..+|++..+-+-.+-+.|-..++       ++ + +.|+++.++... |
T Consensus       376 ~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP  455 (835)
T KOG2047|consen  376 TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVP  455 (835)
T ss_pred             ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC
Confidence            11111      2245667777888888888888888776543333322222222       11 2 667766665554 2


Q ss_pred             Cc--------------------chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHH--HHHHHHhh-----------
Q 036356          233 EE--------------------NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL--LISLTAVC-----------  279 (462)
Q Consensus       233 ~~--------------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~-----------  279 (462)
                      ..                    ..|...+..--..|-++....+|+.+.+..+.....+  |..+++..           
T Consensus       456 ~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE  535 (835)
T KOG2047|consen  456 TNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE  535 (835)
T ss_pred             CchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            22                    2333444444455677777788888887776544333  22233221           


Q ss_pred             -c----CCCCH-hHHHHHHHHHHc---CCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHH----hcCCcchHHH
Q 036356          280 -R----YQPNV-TLWNAMISGYAK---NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA----KCGSVDLAPM  346 (462)
Q Consensus       280 -~----~~~~~-~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~  346 (462)
                       |    ..|++ ..|+..+.-+.+   ..+++.|..+|++.+     + |++|...-+  +.-.|+    +.|....|..
T Consensus       536 rgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL-----~-~Cpp~~aKt--iyLlYA~lEEe~GLar~ams  607 (835)
T KOG2047|consen  536 RGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL-----D-GCPPEHAKT--IYLLYAKLEEEHGLARHAMS  607 (835)
T ss_pred             cCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-----h-cCCHHHHHH--HHHHHHHHHHHhhHHHHHHH
Confidence             1    34444 457766655544   336889999998843     3 666543222  222333    3577778888


Q ss_pred             HhccCCCC-----CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHH---HHHHHHHhcCChHHHHHHHHhC-
Q 036356          347 FFDRTLDK-----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYA---RVVDLLARAGYSNHAFKFIMNM-  417 (462)
Q Consensus       347 ~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m-  417 (462)
                      ++++....     -...||..|.--...=-+.....++++.++  .-|+...-.   -..+.=++.|..+.|..++..- 
T Consensus       608 iyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s  685 (835)
T KOG2047|consen  608 IYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGS  685 (835)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence            88876531     234678777655554444556678888887  567755433   3444557889999999998876 


Q ss_pred             ---CCCCCHHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356          418 ---PIELRLSVRRALLSAWKIPMQQWENMLQTIRG  449 (462)
Q Consensus       418 ---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  449 (462)
                         +=..+...|.+.=..=.++|+ ++......++
T Consensus       686 q~~dPr~~~~fW~twk~FEvrHGn-edT~keMLRi  719 (835)
T KOG2047|consen  686 QICDPRVTTEFWDTWKEFEVRHGN-EDTYKEMLRI  719 (835)
T ss_pred             hcCCCcCChHHHHHHHHHHHhcCC-HHHHHHHHHH
Confidence               112356678777777788888 5555444433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.43  E-value=0.00013  Score=70.94  Aligned_cols=246  Identities=16%  Similarity=0.090  Sum_probs=146.7

Q ss_pred             hhhcCCCCCceeehhh-----hccCCChhhHHHHHHhhcCCCcchHHHHHHhhcCccchhhHHHHHHHHHHh-cCCcchh
Q 036356           46 LFDGLFDRTIVFLDLY-----HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKL-GLELESD  119 (462)
Q Consensus        46 ~~~~~~~~~~~~~~~~-----~~~~~~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~  119 (462)
                      -|-....-|..+-.+|     |..-|+.+.|.+-++.+  .+...|..+.+.|.+.++++-|.-.+..|... |.     
T Consensus       717 dFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga-----  789 (1416)
T KOG3617|consen  717 DFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA-----  789 (1416)
T ss_pred             HhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH-----
Confidence            3344445566677666     88999999998777755  45668999999999999999998888887642 22     


Q ss_pred             HHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhc
Q 036356          120 LLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR  199 (462)
Q Consensus       120 ~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  199 (462)
                         +++.+....|+ .+=.-+...-...|.+++|..+|++-     +         -|..|=+.|-..|.|++|.++-+.
T Consensus       790 ---RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~c-----k---------R~DLlNKlyQs~g~w~eA~eiAE~  851 (1416)
T KOG3617|consen  790 ---RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQC-----K---------RYDLLNKLYQSQGMWSEAFEIAET  851 (1416)
T ss_pred             ---HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHH-----H---------HHHHHHHHHHhcccHHHHHHHHhh
Confidence               11111111232 22112222235668888888888874     2         233344556667777777777654


Q ss_pred             cCCCC-cchHHH-------------HHHHHHhCchHHHHHHHhhhc------------CCcchHHHHHHhhcCccchhhh
Q 036356          200 TLDKD-VVMRSA-------------MIVGYGLHEWSAFGSFDGLLS------------NEENEYGTALDCSCDLEFLEQG  253 (462)
Q Consensus       200 m~~~~-~~~~~~-------------li~~~~~~~~~a~~~~~~m~~------------~~~~~~~~ll~~~~~~~~~~~a  253 (462)
                      -..-. ..||..             -+.-|-+.+..|+++++-+.+            .|...|......+-..|+.+.|
T Consensus       852 ~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA  931 (1416)
T KOG3617|consen  852 KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA  931 (1416)
T ss_pred             ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence            22100 011111             122222222222222222222            3444555555555677778888


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHH
Q 036356          254 KIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID  333 (462)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~  333 (462)
                      +.+|.....                         |-++++..|-.|+.++|-++-++        .   -|....-.|.+
T Consensus       932 l~~Y~~A~D-------------------------~fs~VrI~C~qGk~~kAa~iA~e--------s---gd~AAcYhlaR  975 (1416)
T KOG3617|consen  932 LSFYSSAKD-------------------------YFSMVRIKCIQGKTDKAARIAEE--------S---GDKAACYHLAR  975 (1416)
T ss_pred             HHHHHHhhh-------------------------hhhheeeEeeccCchHHHHHHHh--------c---ccHHHHHHHHH
Confidence            777776543                         55666777778888888777655        2   34445556778


Q ss_pred             HHHhcCCcchHHHHhccCC
Q 036356          334 MYAKCGSVDLAPMFFDRTL  352 (462)
Q Consensus       334 ~~~~~g~~~~A~~~~~~~~  352 (462)
                      .|...|++.+|...|.+..
T Consensus       976 ~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  976 MYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             HhhhhHHHHHHHHHHHHHH
Confidence            8888888888888876653

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.43  E-value=0.00011  Score=68.88  Aligned_cols=285  Identities=11%  Similarity=0.012  Sum_probs=164.1

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcch---HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENE---YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT  135 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~  135 (462)
                      +...|+.+.+...+...   .+++...   .......+...|+++.|.+++++..+..+                 .+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-----------------~~~~   78 (355)
T cd05804          16 LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-----------------RDLL   78 (355)
T ss_pred             HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----------------CcHH
Confidence            44556777766666665   2222221   22223344678899999999999988754                 3333


Q ss_pred             eHHHHHHHHHh----CCChhHHHHHHHHhhhhhhhhcCCCCC-chHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHH
Q 036356          136 LRNAMISGYAK----NGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA  210 (462)
Q Consensus       136 ~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  210 (462)
                      .+.. ...+..    .+..+.+.+.++..       ....|+ ......+...+...|++++|...+++..+.++     
T Consensus        79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-----  145 (355)
T cd05804          79 ALKL-HLGAFGLGDFSGMRDHVARVLPLW-------APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-----  145 (355)
T ss_pred             HHHH-hHHHHHhcccccCchhHHHHHhcc-------CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----
Confidence            4432 223333    34444444444331       122333 33445566778889999999999988764332     


Q ss_pred             HHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCC--HhHH
Q 036356          211 MIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN--VTLW  288 (462)
Q Consensus       211 li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~  288 (462)
                                           .+...+..+...+...|++++|...++...+....               .|+  ...|
T Consensus       146 ---------------------~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~---------------~~~~~~~~~  189 (355)
T cd05804         146 ---------------------DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC---------------SSMLRGHNW  189 (355)
T ss_pred             ---------------------CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---------------CcchhHHHH
Confidence                                 12233455566677788888888888877764321               122  2345


Q ss_pred             HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC-CCchhHH-H--HHHHHHHhcCCcchHHHH---hccCC-C-C-Cccc
Q 036356          289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RNNVIVN-T--VLIDMYAKCGSVDLAPMF---FDRTL-D-K-DVVM  358 (462)
Q Consensus       289 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~~~-~-~-~~~~  358 (462)
                      ..+...+...|++++|..++++.+     .... .+..... +  .++.-+...|..+.+.++   ...-. . + ....
T Consensus       190 ~~la~~~~~~G~~~~A~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~  264 (355)
T cd05804         190 WHLALFYLERGDYEAALAIYDTHI-----APSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLA  264 (355)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHh-----ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccch
Confidence            567778889999999999998832     1111 1222111 1  233334445544433333   11111 1 1 1122


Q ss_pred             hH--HHHHHHHhcCChHHHHHHHHHHHHCCCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          359 RS--AMTVGYGLHGLGEEGWVLFHHIRKHGIEP--------RHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       359 ~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +.  ....++...|+.+.|...++.+......+        ..........++...|++++|.+.+...
T Consensus       265 ~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a  333 (355)
T cd05804         265 FNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV  333 (355)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33  56677788899999999999987753221        1222233333556889999999988875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=0.00028  Score=66.24  Aligned_cols=175  Identities=10%  Similarity=0.001  Sum_probs=117.8

Q ss_pred             eehhh--hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCC
Q 036356           57 FLDLY--HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ  131 (462)
Q Consensus        57 ~~~~~--~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~  131 (462)
                      .|..+  +..+|++++|+....++   .+.+...+..-+-++.+.+.+++|..+.+.-..                    
T Consensus        15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--------------------   74 (652)
T KOG2376|consen   15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--------------------   74 (652)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--------------------
Confidence            34555  88899999999999999   444567888888899999999999966553221                    


Q ss_pred             CCeeeHHH--HHHHHH--hCCChhHHHHHHHHhhhhhhhhcCCCCC-chHHHHHHHHHHhcCCcccHHHHhhccCCCCcc
Q 036356          132 PNVTLRNA--MISGYA--KNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV  206 (462)
Q Consensus       132 p~~~~~~~--li~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  206 (462)
                        ..+++.  +=.+|+  +.+..++|+..++-.          .++ ..+...-...+.+.|++++|..+|+.+.+.+..
T Consensus        75 --~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d  142 (652)
T KOG2376|consen   75 --LLVINSFFFEKAYCEYRLNKLDEALKTLKGL----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD  142 (652)
T ss_pred             --hhhcchhhHHHHHHHHHcccHHHHHHHHhcc----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence              111222  344544  689999999988753          333 346666677788999999999999999776666


Q ss_pred             hHHHHHHHHHh-Cc-hHHHHHHHhhhcCCcchHHHHHHh---hcCccchhhhHHHHHHHHHh
Q 036356          207 MRSAMIVGYGL-HE-WSAFGSFDGLLSNEENEYGTALDC---SCDLEFLEQGKIVHGFMIKL  263 (462)
Q Consensus       207 ~~~~li~~~~~-~~-~~a~~~~~~m~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~  263 (462)
                      .+..-+.+-.. .+ .....+.+........+|..+.+.   +...|++.+|+++++...+.
T Consensus       143 d~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~  204 (652)
T KOG2376|consen  143 DQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI  204 (652)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            66555543222 22 111123444444335566655543   45789999999999988443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.38  E-value=2.9e-05  Score=69.32  Aligned_cols=241  Identities=13%  Similarity=0.042  Sum_probs=150.9

Q ss_pred             HHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc---
Q 036356          143 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE---  219 (462)
Q Consensus       143 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~---  219 (462)
                      .+--.|++..++.-.+ .     .......+.....-+.+++...|+.+.+..-+..-..|.......+ ..|....   
T Consensus        10 n~fy~G~Y~~~i~e~~-~-----~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~l-a~y~~~~~~~   82 (290)
T PF04733_consen   10 NQFYLGNYQQCINEAS-L-----KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLL-AEYLSSPSDK   82 (290)
T ss_dssp             HHHCTT-HHHHCHHHH-C-----HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHH-HHHHCTSTTH
T ss_pred             HHHHhhhHHHHHHHhh-c-----cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHH-HHHHhCccch
Confidence            3444577777775444 2     2222222344455577888888988776665555445555544333 3444442   


Q ss_pred             hHHHHHHHhhhc---C--CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHH
Q 036356          220 WSAFGSFDGLLS---N--EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG  294 (462)
Q Consensus       220 ~~a~~~~~~m~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~  294 (462)
                      +.++.-+++...   +  +..........+...|++++|++++...                      .+.......+..
T Consensus        83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----------------------~~lE~~al~Vqi  140 (290)
T PF04733_consen   83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----------------------GSLELLALAVQI  140 (290)
T ss_dssp             HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----------------------TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----------------------CcccHHHHHHHH
Confidence            566665655443   1  2222233335567889999999887642                      355666677889


Q ss_pred             HHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh----cCCcchHHHHhccCCC---CCccchHHHHHHHH
Q 036356          295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTLD---KDVVMRSAMTVGYG  367 (462)
Q Consensus       295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~  367 (462)
                      |.+.++++.|.+.++.     |.+  +..|. +...+..++..    ...+.+|..+|+++.+   ++..+.+.+..++.
T Consensus       141 ~L~~~R~dlA~k~l~~-----~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l  212 (290)
T PF04733_consen  141 LLKMNRPDLAEKELKN-----MQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL  212 (290)
T ss_dssp             HHHTT-HHHHHHHHHH-----HHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHH-----HHh--cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            9999999999999988     443  33343 33334444433    3469999999999874   45667788888999


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCh-HHHHHHHHhC-CCCCC
Q 036356          368 LHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYS-NHAFKFIMNM-PIELR  422 (462)
Q Consensus       368 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~-~~A~~~~~~m-~~~p~  422 (462)
                      ..|++++|.+++.+...  ..|+ ..+..-++-.....|+. +.+.+.+.++ ...|+
T Consensus       213 ~~~~~~eAe~~L~~al~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~  268 (290)
T PF04733_consen  213 QLGHYEEAEELLEEALE--KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN  268 (290)
T ss_dssp             HCT-HHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred             HhCCHHHHHHHHHHHHH--hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence            99999999999999776  4555 56666677777777877 7788899888 33454

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.36  E-value=4.6e-05  Score=77.95  Aligned_cols=220  Identities=13%  Similarity=0.063  Sum_probs=169.0

Q ss_pred             CCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--------CCcchHHHHHHHHHhCc--hHHHHHHHhhhc-CC-cchH
Q 036356          170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--------KDVVMRSAMIVGYGLHE--WSAFGSFDGLLS-NE-ENEY  237 (462)
Q Consensus       170 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~~--~~a~~~~~~m~~-~~-~~~~  237 (462)
                      .+.+...|-.-|..+...++.++|.+++++...        .-...|.+++..-...|  +...++|++..+ -| -..|
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence            344567788888889999999999999987653        12345777777666666  888899999998 33 5678


Q ss_pred             HHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHH
Q 036356          238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG  317 (462)
Q Consensus       238 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  317 (462)
                      ..|...|.+.+.+++|.++++.|.+.-                 .-....|...+..+.+.++-+.|..++.+.+...  
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-----------------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-- 1594 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-----------------GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-- 1594 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHh-----------------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--
Confidence            889999999999999999999999873                 3467889999999999999999999999864321  


Q ss_pred             hhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--Hh
Q 036356          318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR--HQ  392 (462)
Q Consensus       318 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~  392 (462)
                        .-.-........+..=.+.|+.+.+..+|+....   .-...|+.+|+.-.++|+.+.+..+|++....++.|-  -.
T Consensus      1595 --Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1595 --PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred             --chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence              1111344445555666788999999999998873   3566899999999999999999999999999888886  34


Q ss_pred             HHHHHHHHHHhcCChHHH
Q 036356          393 HYARVVDLLARAGYSNHA  410 (462)
Q Consensus       393 ~~~~li~~~~~~g~~~~A  410 (462)
                      .|.-.++.=-..|+-+.+
T Consensus      1673 ffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1673 FFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred             HHHHHHHHHHhcCchhhH
Confidence            555555554555654443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.32  E-value=1.2e-06  Score=50.63  Aligned_cols=35  Identities=31%  Similarity=0.414  Sum_probs=32.3

Q ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036356          357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH  391 (462)
Q Consensus       357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  391 (462)
                      .+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            47999999999999999999999999999999973

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.31  E-value=0.00014  Score=70.31  Aligned_cols=122  Identities=17%  Similarity=0.142  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC--CC-CccchHHH
Q 036356          287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAM  362 (462)
Q Consensus       287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l  362 (462)
                      .|......+.+.+..++|...+.+       ..++.| ....|......+...|..++|...|....  +| ++.+-.++
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~E-------a~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al  724 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLE-------ASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL  724 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHH-------HHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            466666778888999999877766       234444 45667777777888999999999998766  45 45678899


Q ss_pred             HHHHHhcCChHHHHH--HHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          363 TVGYGLHGLGEEGWV--LFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       363 i~~~~~~~~~~~a~~--~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      ...+.+.|+...|.+  ++.++.+  +.|+ ...|--+...+-+.|+.++|.+.|...
T Consensus       725 a~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  725 AELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA  780 (799)
T ss_pred             HHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            999999999988888  9999998  7786 789999999999999999999998865

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.27  E-value=0.00063  Score=66.40  Aligned_cols=219  Identities=8%  Similarity=-0.130  Sum_probs=120.9

Q ss_pred             CChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceee-hhh-hccCCChhhHHHHHHhhcCCCcchHHH
Q 036356           11 CTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFL-DLY-HLWSRTEWSAFGSFDGLLSNEENEYGT   88 (462)
Q Consensus        11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~A~~~~~~m~~~~~~~~~~   88 (462)
                      ..|..+-+.|.+.++++-|+-.+..|....-. +-+-+....++.... .++ ..+.|..++|+.+|++...     |..
T Consensus       758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRga-RAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DL  831 (1416)
T KOG3617|consen  758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGA-RALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDL  831 (1416)
T ss_pred             HHHHHHHHHhhhhccccHHHHhhhhhhhhhhH-HHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHH
Confidence            34667777777777777777777777544321 111111122221111 122 6666777778777776622     233


Q ss_pred             HHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhh-----
Q 036356           89 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY-----  163 (462)
Q Consensus        89 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----  163 (462)
                      +=+.|-..|.+++|.++-+.=-+.                   .-..||-.-..-+-..++++.|++.|++-...     
T Consensus       832 lNKlyQs~g~w~eA~eiAE~~DRi-------------------HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~  892 (1416)
T KOG3617|consen  832 LNKLYQSQGMWSEAFEIAETKDRI-------------------HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVF  892 (1416)
T ss_pred             HHHHHHhcccHHHHHHHHhhccce-------------------ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHH
Confidence            344455567777777765532222                   12345555566666678888888888764200     


Q ss_pred             hhhh---------cCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc--hHHHHHHHhhhcC
Q 036356          164 YIGK---------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSN  232 (462)
Q Consensus       164 ~~~~---------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~~  232 (462)
                      .+..         -.-..|...|.-....+-..|+++.|+.++...+     -|-.+++..+-.|  ++|-.+-++-  .
T Consensus       893 rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es--g  965 (1416)
T KOG3617|consen  893 RMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEES--G  965 (1416)
T ss_pred             HHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHhc--c
Confidence            0000         0012233344444444555677777777666543     2334444444444  5555555543  5


Q ss_pred             CcchHHHHHHhhcCccchhhhHHHHHHHH
Q 036356          233 EENEYGTALDCSCDLEFLEQGKIVHGFMI  261 (462)
Q Consensus       233 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  261 (462)
                      |......+.+.|-+.|++.+|..+|-...
T Consensus       966 d~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  966 DKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            66667777778888888888887776654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.25  E-value=3.3e-05  Score=73.97  Aligned_cols=90  Identities=11%  Similarity=0.005  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 036356          327 VNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR  403 (462)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  403 (462)
                      +|-..-.+..+.++++.|.+.|....  +| +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|.-.+-...+
T Consensus       521 ~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvd  599 (777)
T KOG1128|consen  521 TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVD  599 (777)
T ss_pred             HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhh
Confidence            44444444444455555555544433  23 23345555555555555555555555554433 1223333333344444


Q ss_pred             cCChHHHHHHHHhC
Q 036356          404 AGYSNHAFKFIMNM  417 (462)
Q Consensus       404 ~g~~~~A~~~~~~m  417 (462)
                      .|.+++|++.+..+
T Consensus       600 vge~eda~~A~~rl  613 (777)
T KOG1128|consen  600 VGEFEDAIKAYHRL  613 (777)
T ss_pred             cccHHHHHHHHHHH
Confidence            55555555554444

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.22  E-value=2.3e-06  Score=49.04  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=30.8

Q ss_pred             ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036356          356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP  389 (462)
Q Consensus       356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  389 (462)
                      +.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            3589999999999999999999999999999887

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.21  E-value=0.0011  Score=70.36  Aligned_cols=304  Identities=10%  Similarity=-0.033  Sum_probs=180.8

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcC--CCCC--chHHHHHHHHHHhcCCcccHHHHhhccCC--C--Cc---
Q 036356          137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE--YRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K--DV---  205 (462)
Q Consensus       137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~--~~---  205 (462)
                      .......+...|++++|...++..... ....+  ..+.  ......+...+...|++++|...+++...  +  +.   
T Consensus       412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  490 (903)
T PRK04841        412 VLLQAWLAQSQHRYSEVNTLLARAEQE-LKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR  490 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh-ccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence            344455567789999999998875100 00001  0111  12222333456678999999998876532  1  21   


Q ss_pred             -chHHHHHHHHHhCc--hHHHHHHHhhhc-------C--CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHH
Q 036356          206 -VMRSAMIVGYGLHE--WSAFGSFDGLLS-------N--EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI  273 (462)
Q Consensus       206 -~~~~~li~~~~~~~--~~a~~~~~~m~~-------~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  273 (462)
                       ...+.+...+...|  ++|...+++...       +  ...+...+...+...|+++.|...+++.....-....    
T Consensus       491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~----  566 (903)
T PRK04841        491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL----  566 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc----
Confidence             12333444455566  788888877765       1  1234455566778899999999998887653110000    


Q ss_pred             HHHHhhcCCC-CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC
Q 036356          274 SLTAVCRYQP-NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL  352 (462)
Q Consensus       274 ~l~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~  352 (462)
                            ...+ ....+..+...+...|++++|...+.+.+.- ....+.......+..+...+...|+.+.|...++...
T Consensus       567 ------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~  639 (903)
T PRK04841        567 ------EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV-LSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE  639 (903)
T ss_pred             ------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh-hhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                  0001 2233445556677789999999998875431 1111211123445556667788999999988887663


Q ss_pred             C----CC-ccchH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHhC--
Q 036356          353 D----KD-VVMRS-----AMTVGYGLHGLGEEGWVLFHHIRKHGIEPR---HQHYARVVDLLARAGYSNHAFKFIMNM--  417 (462)
Q Consensus       353 ~----~~-~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m--  417 (462)
                      .    .. ...+.     ..+..+...|+.+.|.+++...........   ...+..+..++...|++++|...+++.  
T Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~  719 (903)
T PRK04841        640 NLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE  719 (903)
T ss_pred             HHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2    11 11111     122444567888999888777554211111   112345667788899999999888876  


Q ss_pred             -----CCCCC-HHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          418 -----PIELR-LSVRRALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       418 -----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                           +..++ ..+...+..++...|+.++|...+.+.+..
T Consensus       720 ~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        720 NARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                 22222 245667778888999999998888776543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=0.0016  Score=65.17  Aligned_cols=267  Identities=12%  Similarity=0.025  Sum_probs=141.6

Q ss_pred             CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcC-CCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHH
Q 036356          132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE-YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA  210 (462)
Q Consensus       132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  210 (462)
                      .|+..-+.-..++..++-..+-++++++..    .... +.-+...-|.|+-...+ -+...+.+..+++..-|...   
T Consensus       982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIv----L~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~--- 1053 (1666)
T KOG0985|consen  982 QDPEEVSVTVKAFMTADLPNELIELLEKIV----LDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPD--- 1053 (1666)
T ss_pred             CChHHHHHHHHHHHhcCCcHHHHHHHHHHh----cCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchh---
Confidence            455667778899999999999999999972    2222 22333444555544443 34556666666666433321   


Q ss_pred             HHHHHHhCc--hHHHHHHHhhhc-------------------------CCcchHHHHHHhhcCccchhhhHHHHHHHHHh
Q 036356          211 MIVGYGLHE--WSAFGSFDGLLS-------------------------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKL  263 (462)
Q Consensus       211 li~~~~~~~--~~a~~~~~~m~~-------------------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  263 (462)
                      +......++  ++|+.+|++...                         .....|+.+..+-.+.|.+.+|.+-|-.    
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik---- 1129 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK---- 1129 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh----
Confidence            122233344  666666655421                         2223444444444444444444433321    


Q ss_pred             CCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcch
Q 036356          264 GLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL  343 (462)
Q Consensus       264 ~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  343 (462)
                                        ..|...|.-+++...+.|.+++-.+++..     .++..-+|.+.+  .||-+|++.+++.+
T Consensus      1130 ------------------adDps~y~eVi~~a~~~~~~edLv~yL~M-----aRkk~~E~~id~--eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1130 ------------------ADDPSNYLEVIDVASRTGKYEDLVKYLLM-----ARKKVREPYIDS--ELIFAYAKTNRLTE 1184 (1666)
T ss_pred             ------------------cCCcHHHHHHHHHHHhcCcHHHHHHHHHH-----HHHhhcCccchH--HHHHHHHHhchHHH
Confidence                              24566677788888888888877777654     344444555443  57777887777766


Q ss_pred             HHHHhccCCCCCcc--------------------------chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 036356          344 APMFFDRTLDKDVV--------------------------MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARV  397 (462)
Q Consensus       344 A~~~~~~~~~~~~~--------------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  397 (462)
                      -+..+.   -||..                          -|..|...+...|+++.|.+.-++.      -+..||..+
T Consensus      1185 lE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~V 1255 (1666)
T KOG0985|consen 1185 LEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEV 1255 (1666)
T ss_pred             HHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHH
Confidence            555443   23332                          3333444444444444443322221      234455555


Q ss_pred             HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 036356          398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQT  446 (462)
Q Consensus       398 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  446 (462)
                      -.+|...+.+.-|.-  .-+.+.....-..-|+.-|-..|-+++-+..+
T Consensus      1256 cfaCvd~~EFrlAQi--CGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1256 CFACVDKEEFRLAQI--CGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred             HHHHhchhhhhHHHh--cCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence            555555444433310  00022223334566677777777776655443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.19  E-value=7.3e-05  Score=69.84  Aligned_cols=237  Identities=14%  Similarity=0.105  Sum_probs=152.4

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +.++|+..+|.-.|+..   .+-+...|-.|.......++-..|+..+.+..+..+                 -|....-
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-----------------~NleaLm  357 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-----------------TNLEALM  357 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-----------------ccHHHHH
Confidence            88999999999999988   444567999999999999999999999999998875                 6778888


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCC-----CC---CchHHHHHHHHHHhcCCcccHHHHhhccC-----CCCc
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-----RN---NVIVNTVLIDMYAKCGSVDLAPMFFDRTL-----DKDV  205 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~  205 (462)
                      +|.-.|...|.-..|+++++...     ....     .+   +...-+.  ..+.....+....++|-++.     ..|.
T Consensus       358 aLAVSytNeg~q~~Al~~L~~Wi-----~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~Dp  430 (579)
T KOG1125|consen  358 ALAVSYTNEGLQNQALKMLDKWI-----RNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDP  430 (579)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHH-----HhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCCh
Confidence            88889999999999999999873     1110     00   0000000  00011111122223332221     2455


Q ss_pred             chHHHHHHHHHhCc--hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhc
Q 036356          206 VMRSAMIVGYGLHE--WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR  280 (462)
Q Consensus       206 ~~~~~li~~~~~~~--~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  280 (462)
                      ..+..|--.|-..+  ++|.+-|+....  | |...||.|-..++...+.++|...|.+.++.                 
T Consensus       431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-----------------  493 (579)
T KOG1125|consen  431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL-----------------  493 (579)
T ss_pred             hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-----------------
Confidence            55666655565555  777777777776  3 4556777777777777777777777777764                 


Q ss_pred             CCCC-HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC------CCchhHHHHHHHHHHhcCCcc
Q 036356          281 YQPN-VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------RNNVIVNTVLIDMYAKCGSVD  342 (462)
Q Consensus       281 ~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~p~~~~~~~li~~~~~~g~~~  342 (462)
                       +|+ +..+..|.-+|...|.+++|...|-..+.  |...+.      .++...|..|=.++.-.++.|
T Consensus       494 -qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~--mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  494 -QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS--MQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             -CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH--hhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence             354 44555566667777777777777766554  443321      122335555544444444444

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.18  E-value=2.7e-06  Score=49.11  Aligned_cols=35  Identities=31%  Similarity=0.448  Sum_probs=32.5

Q ss_pred             eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCc
Q 036356          135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV  174 (462)
Q Consensus       135 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  174 (462)
                      .+||++|.+|++.|++++|.++|++|     .+.|++||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M-----~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEM-----LERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHH-----HHcCCCCCC
Confidence            47999999999999999999999999     889999984

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.17  E-value=0.0048  Score=57.71  Aligned_cols=125  Identities=14%  Similarity=0.160  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--CCccch-HHH
Q 036356          287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMR-SAM  362 (462)
Q Consensus       287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l  362 (462)
                      +|...|..-.+..-++.|..+|.+     ..+.+..+ ++.++++++.-||. ++.+-|.++|+--.+  +|...| ...
T Consensus       368 v~~~~mn~irR~eGlkaaR~iF~k-----aR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~Y  441 (656)
T KOG1914|consen  368 VYCQYMNFIRRAEGLKAARKIFKK-----AREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKY  441 (656)
T ss_pred             ehhHHHHHHHHhhhHHHHHHHHHH-----HhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHH
Confidence            466677777777778888888888     66666666 67788888887765 677888888885442  455444 456


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          363 TVGYGLHGLGEEGWVLFHHIRKHGIEPR--HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       363 i~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +.-+...++-..|..+|++....++.|+  ...|..+++-=..-|++.-+.++-+++
T Consensus       442 ldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~  498 (656)
T KOG1914|consen  442 LDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR  498 (656)
T ss_pred             HHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            6677777888888888888888877776  578888888888888888888887776

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=0.0017  Score=55.99  Aligned_cols=178  Identities=10%  Similarity=-0.020  Sum_probs=120.6

Q ss_pred             hccCCChhhHHHHHHhh--cCC-CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL--LSN-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +.+..++.+|++++..-  ..| +....+.+..+|-...++..|-..++++-+.                  .|...-|.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql------------------~P~~~qYr   81 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL------------------HPELEQYR   81 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------ChHHHHHH
Confidence            35556677777777655  334 6677888888888899999999999998876                  35555444


Q ss_pred             H-HHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHH--HHhcCCcccHHHHhhccCC-CCcchHHHHHHH
Q 036356          139 A-MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM--YAKCGSVDLAPMFFDRTLD-KDVVMRSAMIVG  214 (462)
Q Consensus       139 ~-li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~-~~~~~~~~li~~  214 (462)
                      . -...+-+++.+.+|+++...|     ...   |+...-..-+.+  ....+|+..+..++++... .+..+.+.....
T Consensus        82 lY~AQSLY~A~i~ADALrV~~~~-----~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCl  153 (459)
T KOG4340|consen   82 LYQAQSLYKACIYADALRVAFLL-----LDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCL  153 (459)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHh-----cCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhe
Confidence            2 235567889999999999887     221   222222222222  3356889999999998873 444444444444


Q ss_pred             HHhCc--hHHHHHHHhhhc----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCC
Q 036356          215 YGLHE--WSAFGSFDGLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE  266 (462)
Q Consensus       215 ~~~~~--~~a~~~~~~m~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  266 (462)
                      ..+.|  +.|.+-|+...+    .....|+..+..| +.++++.|++...+++++|+.
T Consensus       154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r  210 (459)
T KOG4340|consen  154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR  210 (459)
T ss_pred             eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence            45556  888888888777    4556666655444 567888888888888888875

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.12  E-value=7e-05  Score=69.95  Aligned_cols=244  Identities=13%  Similarity=0.074  Sum_probs=169.9

Q ss_pred             HHHhcCCcccHHHHhhccCCC---CcchHHHHHHHHHhCc--hHHHHHHHhhhc---CCcchHHHHHHhhcCccchhhhH
Q 036356          183 MYAKCGSVDLAPMFFDRTLDK---DVVMRSAMIVGYGLHE--WSAFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGK  254 (462)
Q Consensus       183 ~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~--~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~  254 (462)
                      -+.+.|++.+|.-.|+...+.   +...|--|-..-..++  ..|+..+++-.+   .|....-.|.-.|...|.-..|.
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al  373 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL  373 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence            356788888888888876644   3455666666666666  778888888777   45666777778888999999999


Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHH
Q 036356          255 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM  334 (462)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~  334 (462)
                      ..++..++...+     |..+...   .++...-+.  ..+.......+..++|-++    ....+.++|..+...|--.
T Consensus       374 ~~L~~Wi~~~p~-----y~~l~~a---~~~~~~~~~--~s~~~~~~l~~i~~~fLea----a~~~~~~~DpdvQ~~LGVL  439 (579)
T KOG1125|consen  374 KMLDKWIRNKPK-----YVHLVSA---GENEDFENT--KSFLDSSHLAHIQELFLEA----ARQLPTKIDPDVQSGLGVL  439 (579)
T ss_pred             HHHHHHHHhCcc-----chhcccc---CccccccCC--cCCCCHHHHHHHHHHHHHH----HHhCCCCCChhHHhhhHHH
Confidence            998888765532     0000000   000000000  1122222334445555442    3345555777788888888


Q ss_pred             HHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHH
Q 036356          335 YAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHA  410 (462)
Q Consensus       335 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A  410 (462)
                      |--.|++++|...|+...+  | |...||.|.-.++...+.++|+..+.+..+  ++|+ +....-|.-.|...|.+++|
T Consensus       440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA  517 (579)
T KOG1125|consen  440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEA  517 (579)
T ss_pred             HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHH
Confidence            9999999999999998763  4 778999999999999999999999999999  9999 66777778889999999999


Q ss_pred             HHHHHhC------------CCCCCHHHHHHHHHHHHccCChHHH
Q 036356          411 FKFIMNM------------PIELRLSVRRALLSAWKIPMQQWEN  442 (462)
Q Consensus       411 ~~~~~~m------------~~~p~~~~~~~l~~~~~~~~~~~~a  442 (462)
                      .+.|=..            .-.++...|.+|=.++...++.+.+
T Consensus       518 ~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  518 VKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             HHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence            8876554            0112346888877777777766533

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.11  E-value=0.00016  Score=63.30  Aligned_cols=51  Identities=10%  Similarity=-0.121  Sum_probs=31.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHhC-CCC---C-CHHHHHHHHHHHHccCChHHHHHHH
Q 036356          396 RVVDLLARAGYSNHAFKFIMNM-PIE---L-RLSVRRALLSAWKIPMQQWENMLQT  446 (462)
Q Consensus       396 ~li~~~~~~g~~~~A~~~~~~m-~~~---p-~~~~~~~l~~~~~~~~~~~~a~~~~  446 (462)
                      .+...+.+.|++++|...+++. ...   | ....+..+..++...|+.++|...+
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~  226 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA  226 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3445566777777777766665 211   2 2456667777777777777776544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.08  E-value=0.00023  Score=62.24  Aligned_cols=127  Identities=13%  Similarity=0.035  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCch-hHHHHHHHHHHhc--------CCcchHHHHhccCCC--CC
Q 036356          287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV-IVNTVLIDMYAKC--------GSVDLAPMFFDRTLD--KD  355 (462)
Q Consensus       287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~--------g~~~~A~~~~~~~~~--~~  355 (462)
                      .+..+..++.+.|++++|...+++.+.    ...-.|.. .++..+..++.+.        |+.+.|.+.|+++.+  |+
T Consensus        72 a~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  147 (235)
T TIGR03302        72 AQLDLAYAYYKSGDYAEAIAAADRFIR----LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN  147 (235)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence            556666777777777777777777431    11111111 1333344444433        566777777776653  33


Q ss_pred             cc-chH-----------------HHHHHHHhcCChHHHHHHHHHHHHCC-CCC-CHhHHHHHHHHHHhcCChHHHHHHHH
Q 036356          356 VV-MRS-----------------AMTVGYGLHGLGEEGWVLFHHIRKHG-IEP-RHQHYARVVDLLARAGYSNHAFKFIM  415 (462)
Q Consensus       356 ~~-~~~-----------------~li~~~~~~~~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~  415 (462)
                      .. .+.                 .+...|.+.|++++|...+++..+.. -.| ....+..+..++...|++++|...++
T Consensus       148 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~  227 (235)
T TIGR03302       148 SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA  227 (235)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            21 111                 23445666777777777777777641 112 24567777777777777777777777


Q ss_pred             hC
Q 036356          416 NM  417 (462)
Q Consensus       416 ~m  417 (462)
                      .+
T Consensus       228 ~l  229 (235)
T TIGR03302       228 VL  229 (235)
T ss_pred             HH
Confidence            65

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.08  E-value=0.0022  Score=68.22  Aligned_cols=328  Identities=9%  Similarity=0.014  Sum_probs=191.6

Q ss_pred             hccCCChhhHHHHHHhh----cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee--
Q 036356           62 HLWSRTEWSAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT--  135 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~--  135 (462)
                      ....|++..+...++.+    ...+..........+...|+++++..++....+.--.....          ..+...  
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~----------~~~~~~~~  453 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIE----------LDGTLQAE  453 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcc----------cchhHHHH
Confidence            33445555555555544    11122222333444456677888887777765431100000          001111  


Q ss_pred             eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC----chHHHHHHHHHHhcCCcccHHHHhhccCC-------CC
Q 036356          136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN----VIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------KD  204 (462)
Q Consensus       136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~~  204 (462)
                      ....+...+...|++++|...+++.     ...-...+    ....+.+...+...|++++|...+++...       +.
T Consensus       454 ~~~~~a~~~~~~g~~~~A~~~~~~a-----l~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~  528 (903)
T PRK04841        454 FNALRAQVAINDGDPEEAERLAELA-----LAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYH  528 (903)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHH-----HhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchH
Confidence            1122234456799999999999885     22111111    12445566677889999999999877652       11


Q ss_pred             c--chHHHHHHHHHhCc--hHHHHHHHhhhc-------CC----cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcch
Q 036356          205 V--VMRSAMIVGYGLHE--WSAFGSFDGLLS-------NE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES  269 (462)
Q Consensus       205 ~--~~~~~li~~~~~~~--~~a~~~~~~m~~-------~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  269 (462)
                      .  .++..+...+...|  ++|...+++...       ++    ...+..+...+...|++++|...+.......-....
T Consensus       529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~  608 (903)
T PRK04841        529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP  608 (903)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc
Confidence            1  22333444555666  777777776555       11    122334445566779999999999887654211000


Q ss_pred             HHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCch-hHH-HHHHHHHHhcCCcchHHHH
Q 036356          270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV-IVN-TVLIDMYAKCGSVDLAPMF  347 (462)
Q Consensus       270 ~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~-~~li~~~~~~g~~~~A~~~  347 (462)
                                  ......+..+...+...|+.++|...+.....- ....+..... ... ...+..+...|+.+.|..+
T Consensus       609 ------------~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~  675 (903)
T PRK04841        609 ------------QQQLQCLAMLAKISLARGDLDNARRYLNRLENL-LGNGRYHSDWIANADKVRLIYWQMTGDKEAAANW  675 (903)
T ss_pred             ------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHH
Confidence                        012334445666788899999999999875331 1111211111 111 1122445568899999999


Q ss_pred             hccCCCCCcc-c------hHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHHHHHHH
Q 036356          348 FDRTLDKDVV-M------RSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHAFKFIM  415 (462)
Q Consensus       348 ~~~~~~~~~~-~------~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~  415 (462)
                      +.....+... .      +..+..++...|++++|...+++....    |..++ ..+...+..++.+.|+.++|...+.
T Consensus       676 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~  755 (903)
T PRK04841        676 LRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLL  755 (903)
T ss_pred             HHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            8776543211 1      345667788899999999999987764    43333 4567777888999999999999988


Q ss_pred             hC
Q 036356          416 NM  417 (462)
Q Consensus       416 ~m  417 (462)
                      +.
T Consensus       756 ~A  757 (903)
T PRK04841        756 EA  757 (903)
T ss_pred             HH
Confidence            87

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.04  E-value=6.2e-06  Score=47.17  Aligned_cols=33  Identities=24%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCC
Q 036356          135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN  172 (462)
Q Consensus       135 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  172 (462)
                      .+|+.+|.+|++.|+++.|.++|++|     .+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M-----~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEM-----KEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHH-----HHhCCCC
Confidence            68999999999999999999999999     7888887

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.03  E-value=0.00041  Score=69.01  Aligned_cols=151  Identities=13%  Similarity=0.014  Sum_probs=93.0

Q ss_pred             CHhHHHHHHHHHHc----CC----ChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC---
Q 036356          284 NVTLWNAMISGYAK----NG----YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL---  352 (462)
Q Consensus       284 ~~~~~~~li~~~~~----~~----~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---  352 (462)
                      +..+|..+...|.+    .+    +...|...+...+.      -..-+..+||.|--. .-.|.+.-|.-.|-+-.   
T Consensus       774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~------L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se  846 (1238)
T KOG1127|consen  774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS------LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE  846 (1238)
T ss_pred             ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH------HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc
Confidence            45556666555444    11    22356666655321      112345666665443 55567777766665443   


Q ss_pred             CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHH
Q 036356          353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-------PIELRLS  424 (462)
Q Consensus       353 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~  424 (462)
                      +....+|..+.-.+....+++-|...|...+.  +.|+ ...|--........|+.-++..+|..-       +--|+..
T Consensus       847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~  924 (1238)
T KOG1127|consen  847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQ  924 (1238)
T ss_pred             ccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhh
Confidence            34667788888888888899999999998888  7775 556655555555678888888887762       4445665


Q ss_pred             HHHHHHHHHHccCChHHHH
Q 036356          425 VRRALLSAWKIPMQQWENM  443 (462)
Q Consensus       425 ~~~~l~~~~~~~~~~~~a~  443 (462)
                      -|..-..--...|+.++-+
T Consensus       925 Yw~c~te~h~~Ng~~e~~I  943 (1238)
T KOG1127|consen  925 YWLCATEIHLQNGNIEESI  943 (1238)
T ss_pred             HHHHHHHHHHhccchHHHH
Confidence            5555555555556655544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.02  E-value=8.9e-05  Score=68.55  Aligned_cols=113  Identities=12%  Similarity=0.045  Sum_probs=52.6

Q ss_pred             HHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHH
Q 036356          333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAF  411 (462)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~  411 (462)
                      ..+...++++.|..+|+++.+.+......+++.+...++-.+|.+++++...  ..| +...+..-...|.+.++++.|+
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~~lAL  254 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKYELAL  254 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            3333444455555555555443333444444444444444555555555443  222 2333333444444555555555


Q ss_pred             HHHHhC-CCCCC-HHHHHHHHHHHHccCChHHHHHHHH
Q 036356          412 KFIMNM-PIELR-LSVRRALLSAWKIPMQQWENMLQTI  447 (462)
Q Consensus       412 ~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~  447 (462)
                      ++.+++ ...|+ ..+|..|..+|...|++++|+..+.
T Consensus       255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            555554 33332 2355555555555555555554443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.02  E-value=0.00083  Score=69.28  Aligned_cols=237  Identities=13%  Similarity=0.055  Sum_probs=166.7

Q ss_pred             ChhhHHHHHHhh-cCCC-cchHHHHHHhhcCccchhhHHHHHHHHHHh-cCCcchhHHHHHhhhcCCCCCeeeHHHHHHH
Q 036356           67 TEWSAFGSFDGL-LSNE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKL-GLELESDLLISLTAVCRYQPNVTLRNAMISG  143 (462)
Q Consensus        67 ~~~~A~~~~~~m-~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~  143 (462)
                      .++.|.++-+.. -.|| +..|-..|....+.++.+.|+++.++.+.. +++  .+           .--...|.++++.
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~R--Ee-----------eEKLNiWiA~lNl 1506 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFR--EE-----------EEKLNIWIAYLNL 1506 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc--hh-----------HHHHHHHHHHHhH
Confidence            455666666655 5565 567989999999999999999999998754 330  00           1223468888888


Q ss_pred             HHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHHHHHHHHHhCc-
Q 036356          144 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMIVGYGLHE-  219 (462)
Q Consensus       144 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~-  219 (462)
                      -..-|.-+...++|++.      ..-.. --.+|..|...|.+.+.+++|.++|+.|.+   .....|...+..+.+++ 
T Consensus      1507 En~yG~eesl~kVFeRA------cqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1507 ENAYGTEESLKKVFERA------CQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred             HHhhCcHHHHHHHHHHH------HHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH
Confidence            88888888999999885      22222 245788899999999999999999999985   35567888888887777 


Q ss_pred             -hHHHHHHHhhhc--CCcc---hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHH
Q 036356          220 -WSAFGSFDGLLS--NEEN---EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS  293 (462)
Q Consensus       220 -~~a~~~~~~m~~--~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~  293 (462)
                       +.|..++.+..+  |...   ........-.+.|+.+.++.+|+..+...                 +.-...|+..|+
T Consensus      1580 ~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-----------------PKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-----------------PKRTDLWSVYID 1642 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-----------------ccchhHHHHHHH
Confidence             788888887777  5522   22333333357788888888888877653                 235667888888


Q ss_pred             HHHcCCChhHHHHHhhHHHHHHHHhhCCCCc--hhHHHHHHHHHHhcCCcchHH
Q 036356          294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN--VIVNTVLIDMYAKCGSVDLAP  345 (462)
Q Consensus       294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~  345 (462)
                      .-.+.|+.+.+..+|++     ....++.|-  -..|...+..=.+.|+-..++
T Consensus      1643 ~eik~~~~~~vR~lfeR-----vi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFER-----VIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred             HHHccCCHHHHHHHHHH-----HHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence            88888888888888888     445566553  345555555444455544333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.00  E-value=0.0015  Score=66.52  Aligned_cols=166  Identities=11%  Similarity=0.099  Sum_probs=112.0

Q ss_pred             CCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--CCcchH
Q 036356          131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMR  208 (462)
Q Consensus       131 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~  208 (462)
                      ..+...|..|+..+...+++++|.++.+.-      ..-.+-....|-.+...+...++.+.+.-+  .+..  ++..-|
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~------l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~   99 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEH------LKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW   99 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch
Confidence            346677899999999999999999999874      222222333444444467777777766555  2221  111112


Q ss_pred             HHHHHHHHhCchHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHh
Q 036356          209 SAMIVGYGLHEWSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT  286 (462)
Q Consensus       209 ~~li~~~~~~~~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  286 (462)
                      +.+           ..+...|..  -+...+-.+..+|-+.|+.+++..+|+++++...                 -|+.
T Consensus       100 ~~v-----------e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-----------------~n~~  151 (906)
T PRK14720        100 AIV-----------EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-----------------DNPE  151 (906)
T ss_pred             hHH-----------HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-----------------ccHH
Confidence            211           112222223  3445777888999999999999999999999762                 5788


Q ss_pred             HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC
Q 036356          287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD  353 (462)
Q Consensus       287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  353 (462)
                      ..|.+...|... ++++|++++.+.+..                    |...+++..+..+|.++..
T Consensus       152 aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------------~i~~kq~~~~~e~W~k~~~  197 (906)
T PRK14720        152 IVKKLATSYEEE-DKEKAITYLKKAIYR--------------------FIKKKQYVGIEEIWSKLVH  197 (906)
T ss_pred             HHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------------HHhhhcchHHHHHHHHHHh
Confidence            899999999999 999999999884432                    4455566666776666654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.99  E-value=0.00047  Score=60.47  Aligned_cols=176  Identities=9%  Similarity=-0.062  Sum_probs=100.8

Q ss_pred             Cceeehhh------hccCCChhhHHHHHHhh--cCCCcchH-HHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHH
Q 036356           54 TIVFLDLY------HLWSRTEWSAFGSFDGL--LSNEENEY-GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL  124 (462)
Q Consensus        54 ~~~~~~~~------~~~~~~~~~A~~~~~~m--~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~  124 (462)
                      |...|.++      |...|+..-|+.-|...  .+||-..- ---...+.+.|.++.|..=|+..++...  +.......
T Consensus        68 dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~--s~~~~~ea  145 (504)
T KOG0624|consen   68 DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEP--SNGLVLEA  145 (504)
T ss_pred             CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC--CcchhHHH
Confidence            44555555      88888888888888888  77774322 2223456789999999999999988765  22222222


Q ss_pred             hhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCC
Q 036356          125 TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD  204 (462)
Q Consensus       125 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  204 (462)
                      +.+.............+..+.-.|+...|+.....+      -.-.+.|...|..-..+|...|++..|+.=+....+..
T Consensus       146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l------lEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs  219 (504)
T KOG0624|consen  146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL------LEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS  219 (504)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH------HhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Confidence            222211111111222334455567777777777664      12234466666667777777777777765554433211


Q ss_pred             cchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHh
Q 036356          205 VVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKL  263 (462)
Q Consensus       205 ~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  263 (462)
                      .                          .+..++..+-..+...|+.+.++....+-++.
T Consensus       220 ~--------------------------DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl  252 (504)
T KOG0624|consen  220 Q--------------------------DNTEGHYKISQLLYTVGDAENSLKEIRECLKL  252 (504)
T ss_pred             c--------------------------cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence            0                          22333334444455666666666666666553

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.96  E-value=1.1e-05  Score=44.90  Aligned_cols=31  Identities=32%  Similarity=0.509  Sum_probs=24.9

Q ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036356          357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI  387 (462)
Q Consensus       357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  387 (462)
                      ++|+.++.+|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4688888888888888888888888887664

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=0.0017  Score=60.46  Aligned_cols=101  Identities=13%  Similarity=0.024  Sum_probs=64.1

Q ss_pred             HHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChH
Q 036356          333 DMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSN  408 (462)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~  408 (462)
                      ..+.+.|++..|.+.|.++..   .|...|+.-.-+|.+.|.+..|+.=.+...+  +.|+ ...|..=..++....+|+
T Consensus       366 ne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~yd  443 (539)
T KOG0548|consen  366 NEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYD  443 (539)
T ss_pred             HHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHH
Confidence            345566777777777777653   3566777777777777777777777666666  4555 445555555666666777


Q ss_pred             HHHHHHHhC-CCCCCHHHHHHHHHHHHc
Q 036356          409 HAFKFIMNM-PIELRLSVRRALLSAWKI  435 (462)
Q Consensus       409 ~A~~~~~~m-~~~p~~~~~~~l~~~~~~  435 (462)
                      +|++.|.+. ...|+..-+.--++-|..
T Consensus       444 kAleay~eale~dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  444 KALEAYQEALELDPSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            777777776 445555444433333333

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.93  E-value=0.00059  Score=65.78  Aligned_cols=226  Identities=11%  Similarity=-0.006  Sum_probs=169.6

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC--CCCcchHHHHHHH
Q 036356          137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMIVG  214 (462)
Q Consensus       137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~  214 (462)
                      -..+...+...|-..+|..+|++.              ..|.-.|.+|+..|+..+|..+..+-.  +||..-|..+.+.
T Consensus       401 q~~laell~slGitksAl~I~Erl--------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  401 QRLLAELLLSLGITKSALVIFERL--------------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV  466 (777)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHhH--------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence            345667789999999999999994              456778889999999999999876554  4677777777776


Q ss_pred             HHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHH
Q 036356          215 YGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI  292 (462)
Q Consensus       215 ~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li  292 (462)
                      .....  +.|.++++....   ..-..+.....+.++++++.+.++.-.+..                 .....+|-..-
T Consensus       467 ~~d~s~yEkawElsn~~sa---rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-----------------plq~~~wf~~G  526 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSNYISA---RAQRSLALLILSNKDFSEADKHLERSLEIN-----------------PLQLGTWFGLG  526 (777)
T ss_pred             ccChHHHHHHHHHhhhhhH---HHHHhhccccccchhHHHHHHHHHHHhhcC-----------------ccchhHHHhcc
Confidence            66666  888888876532   111222222345788999999888777654                 24678888888


Q ss_pred             HHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCCC---CccchHHHHHHHHh
Q 036356          293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLDK---DVVMRSAMTVGYGL  368 (462)
Q Consensus       293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~  368 (462)
                      .+..+.++.+.|.+.|.+.       ....|+ ...||.+-.+|.+.|+-.+|...+.+..+-   +-..|...+..-.+
T Consensus       527 ~~ALqlek~q~av~aF~rc-------vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd  599 (777)
T KOG1128|consen  527 CAALQLEKEQAAVKAFHRC-------VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD  599 (777)
T ss_pred             HHHHHHhhhHHHHHHHHHH-------hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh
Confidence            8899999999999999873       345665 678999999999999999999999988764   44456677888889


Q ss_pred             cCChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHh
Q 036356          369 HGLGEEGWVLFHHIRKHG-IEPRHQHYARVVDLLAR  403 (462)
Q Consensus       369 ~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~  403 (462)
                      .|.+++|.+.+.++.+.. ..-|......++....+
T Consensus       600 vge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~  635 (777)
T KOG1128|consen  600 VGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE  635 (777)
T ss_pred             cccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence            999999999998887651 11244455555554443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.90  E-value=9.8e-05  Score=58.72  Aligned_cols=98  Identities=8%  Similarity=-0.107  Sum_probs=80.4

Q ss_pred             HHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHh
Q 036356          328 NTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLAR  403 (462)
Q Consensus       328 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~  403 (462)
                      +..+...+...|++++|...|+....   .+...|..+..++...|++++|...|+....  ..|+ ...+..+..++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHH
Confidence            44567788889999999999998763   3566778888899999999999999999998  6675 7788888899999


Q ss_pred             cCChHHHHHHHHhC-CCCCCHHHHH
Q 036356          404 AGYSNHAFKFIMNM-PIELRLSVRR  427 (462)
Q Consensus       404 ~g~~~~A~~~~~~m-~~~p~~~~~~  427 (462)
                      .|++++|...++.. ...|+...+.
T Consensus       105 ~g~~~eAi~~~~~Al~~~p~~~~~~  129 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMSYADASWS  129 (144)
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHH
Confidence            99999999999997 6667654443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.89  E-value=0.0011  Score=56.24  Aligned_cols=156  Identities=13%  Similarity=-0.000  Sum_probs=119.4

Q ss_pred             HHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHH
Q 036356          238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG  317 (462)
Q Consensus       238 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  317 (462)
                      ...-..+.-.|+-+....+........                 ..|....+..+....+.|++.+|...|.+.      
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-----------------~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA------  126 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-----------------PKDRELLAAQGKNQIRNGNFGEAVSVLRKA------  126 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-----------------cccHHHHHHHHHHHHHhcchHHHHHHHHHH------
Confidence            445556666777777766665543321                 245566667888899999999999999883      


Q ss_pred             hhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHH
Q 036356          318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY  394 (462)
Q Consensus       318 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  394 (462)
                      ...-++|...|+.+.-+|.+.|+.+.|..-|.+..+   .+....|.|...|.-.|+.+.|..++.+....+- -|...-
T Consensus       127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~  205 (257)
T COG5010         127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVR  205 (257)
T ss_pred             hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHH
Confidence            234567889999999999999999999998887663   4667788889999999999999999999887332 146666


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC
Q 036356          395 ARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       395 ~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .-+..+....|++++|..+...-
T Consensus       206 ~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         206 QNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             HHHHHHHhhcCChHHHHhhcccc
Confidence            77788888999999999887665

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.88  E-value=0.00017  Score=57.39  Aligned_cols=104  Identities=10%  Similarity=-0.083  Sum_probs=85.9

Q ss_pred             HHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C
Q 036356          346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-R  422 (462)
Q Consensus       346 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~  422 (462)
                      .+|++..+-+...+..+...+...|++++|...|+....  ..|+ ...|..+..++.+.|++++|...|+.. ...| +
T Consensus        14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~   91 (144)
T PRK15359         14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH   91 (144)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            344444433343466678888999999999999999998  7775 788899999999999999999999998 4445 6


Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356          423 LSVRRALLSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       423 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                      ...+..+..++...|+.++|+..+.+.+.
T Consensus        92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~  120 (144)
T PRK15359         92 PEPVYQTGVCLKMMGEPGLAREAFQTAIK  120 (144)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77899999999999999999988887655

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.87  E-value=0.0022  Score=59.27  Aligned_cols=158  Identities=13%  Similarity=0.044  Sum_probs=103.9

Q ss_pred             CCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC--CC-Cccc
Q 036356          282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DVVM  358 (462)
Q Consensus       282 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~  358 (462)
                      .|+...+...+.+......-..+-.++.+     ..+  ..-...-|..-+ .+...|+.++|+..++.+.  .| |..-
T Consensus       271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-----~~~--~~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~N~~~  342 (484)
T COG4783         271 SPDFQLARARIRAKYEALPNQQAADLLAK-----RSK--RGGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPDNPYY  342 (484)
T ss_pred             CccHHHHHHHHHHHhccccccchHHHHHH-----HhC--ccchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCHHH
Confidence            35555566666554444333333333322     111  111233344333 3446688888888888765  35 4445


Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHc
Q 036356          359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKI  435 (462)
Q Consensus       359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~  435 (462)
                      +......+.+.++.++|.+.++++..  ..|+ ....-.+.++|.+.|++.+|+++++..  ..+-|+..|..|.++|..
T Consensus       343 ~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~  420 (484)
T COG4783         343 LELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE  420 (484)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence            55666788888888888888888888  7777 455667778888888888888888887  445577888888888888


Q ss_pred             cCChHHHHHHHHhh
Q 036356          436 PMQQWENMLQTIRG  449 (462)
Q Consensus       436 ~~~~~~a~~~~~~~  449 (462)
                      .|+..++....-++
T Consensus       421 ~g~~~~a~~A~AE~  434 (484)
T COG4783         421 LGNRAEALLARAEG  434 (484)
T ss_pred             hCchHHHHHHHHHH
Confidence            88888877665554

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.86  E-value=0.001  Score=66.35  Aligned_cols=268  Identities=12%  Similarity=0.009  Sum_probs=146.2

Q ss_pred             CCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcch-HHHHHHHH--HhCc--hHHHHHHHhhhc----------CCcc
Q 036356          171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM-RSAMIVGY--GLHE--WSAFGSFDGLLS----------NEEN  235 (462)
Q Consensus       171 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~li~~~--~~~~--~~a~~~~~~m~~----------~~~~  235 (462)
                      +.|...|..+..+|.++|.+..|.++|++...-++.+ |...-.+-  +..|  .+|+..+.....          .-..
T Consensus       593 PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE  672 (1238)
T KOG1127|consen  593 PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAE  672 (1238)
T ss_pred             chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            3356778888888888888888888887766543333 22222222  2233  666666666555          1112


Q ss_pred             hHHHHHHhhcCccc-------hhhhHHHHHHHHHhCCCcchHHHHHHHHhh----cCCCCHhH--HHHHHHH-HHcCCCh
Q 036356          236 EYGTALDCSCDLEF-------LEQGKIVHGFMIKLGLELESDLLISLTAVC----RYQPNVTL--WNAMISG-YAKNGYA  301 (462)
Q Consensus       236 ~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~--~~~li~~-~~~~~~~  301 (462)
                      ++-.+...+.-.|-       ++.+.+.|.-...+....+...+..+-.+|    ...||...  +..++.. .-..+..
T Consensus       673 ~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l  752 (1238)
T KOG1127|consen  673 SVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGAL  752 (1238)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccC
Confidence            22222222222232       334444444444444444555555444442    24555221  2112111 2222222


Q ss_pred             ---h---HHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh----cC----CcchHHHHhccCC---CCCccchHHHHH
Q 036356          302 ---E---EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CG----SVDLAPMFFDRTL---DKDVVMRSAMTV  364 (462)
Q Consensus       302 ---~---~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g----~~~~A~~~~~~~~---~~~~~~~~~li~  364 (462)
                         +   -+.+.+..       ......+..+|..|...|.+    .|    +...|...+....   ..+..+||.|--
T Consensus       753 ~~~d~l~Lg~~c~~~-------hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGV  825 (1238)
T KOG1127|consen  753 KKNDLLFLGYECGIA-------HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGV  825 (1238)
T ss_pred             cchhHHHHHHHHhhH-------HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence               1   11111111       12222334454444443332    22    2235667776654   356777877655


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHH
Q 036356          365 GYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWE  441 (462)
Q Consensus       365 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~  441 (462)
                      . ...|++.-|...|-+-..  ..|. ..+|.-+.-.+.+..+++.|...|... .+.| +..-|--........|+.-+
T Consensus       826 l-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~  902 (1238)
T KOG1127|consen  826 L-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIE  902 (1238)
T ss_pred             h-hccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHH
Confidence            5 666788877777766555  5565 678888888899999999999999998 6666 45566666555666677777


Q ss_pred             HHHHHHh
Q 036356          442 NMLQTIR  448 (462)
Q Consensus       442 a~~~~~~  448 (462)
                      ++..+..
T Consensus       903 ~~~lfaH  909 (1238)
T KOG1127|consen  903 RLILFAH  909 (1238)
T ss_pred             HHHHHHh
Confidence            7655543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.82  E-value=0.0042  Score=52.83  Aligned_cols=137  Identities=12%  Similarity=0.055  Sum_probs=72.2

Q ss_pred             HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCC-CccchHHHHHHHHh----
Q 036356          294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMTVGYGL----  368 (462)
Q Consensus       294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----  368 (462)
                      .|++.|++++|++....         +  -+......=+..+.+..+++.|.+.++.|.+. +..|.+.|..++.+    
T Consensus       117 i~~~~~~~deAl~~~~~---------~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g  185 (299)
T KOG3081|consen  117 IYMHDGDFDEALKALHL---------G--ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG  185 (299)
T ss_pred             HhhcCCChHHHHHHHhc---------c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc
Confidence            45566666666665543         1  11222222233344555566666666666653 33444444444443    


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHH
Q 036356          369 HGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKIPMQQWEN  442 (462)
Q Consensus       369 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a  442 (462)
                      .+.+..|.-+|++|.+ ...|+..+.+-...++...|++++|..++++.  ....++.+...++-.....|+..++
T Consensus       186 gek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~  260 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV  260 (299)
T ss_pred             chhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence            2345666666666654 35566666666666666666666666666665  3233455555554444455554443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.81  E-value=0.00061  Score=54.36  Aligned_cols=121  Identities=9%  Similarity=0.022  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHhcCCcchHHHHhccCCCCCccc-hH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HhHHHHHH
Q 036356          327 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM-RS-----AMTVGYGLHGLGEEGWVLFHHIRKHGIEPR--HQHYARVV  398 (462)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li  398 (462)
                      .|..++..+ ..++...+...++.+.+....+ |.     .+...+...|++++|...|+......-.|+  ......|.
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            444444444 3566666666666665322222 32     344667777888888888888887552332  22444566


Q ss_pred             HHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356          399 DLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKIPMQQWENMLQTIR  448 (462)
Q Consensus       399 ~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  448 (462)
                      ..+...|++++|+..++.. +-......+......+...|+.++|...+.+
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            7777888888888888776 2233455667777888888888888776654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.81  E-value=0.013  Score=51.77  Aligned_cols=278  Identities=12%  Similarity=0.044  Sum_probs=173.5

Q ss_pred             HHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHH---HHHHhcCCcccHHHHhhccCCCCcchHHHHH---H
Q 036356          140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI---DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI---V  213 (462)
Q Consensus       140 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li---~  213 (462)
                      +-..+...|++..|+.-|..-         +..|+..|.++.   ..|...|+-..|+.=|+++.+..+..+.+-+   .
T Consensus        44 lGk~lla~~Q~sDALt~yHaA---------ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~  114 (504)
T KOG0624|consen   44 LGKELLARGQLSDALTHYHAA---------VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV  114 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHH---------HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence            445556666666666666553         333333343333   3455566666665555555432222222211   2


Q ss_pred             HHHhCc--hHHHHHHHhhhc--CCcc----------------hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHH
Q 036356          214 GYGLHE--WSAFGSFDGLLS--NEEN----------------EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI  273 (462)
Q Consensus       214 ~~~~~~--~~a~~~~~~m~~--~~~~----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  273 (462)
                      .+.+.|  +.|..=|+....  |+..                .....+..+...|+...|+.....+++-.         
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~---------  185 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ---------  185 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC---------
Confidence            234445  666666666555  3221                12233444556677777777777776643         


Q ss_pred             HHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC
Q 036356          274 SLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD  353 (462)
Q Consensus       274 ~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  353 (462)
                              +.|+..|..-..+|...|.+..|+.-++.     ..+. ..-++.+.--+-..+...|+.+.++...++..+
T Consensus       186 --------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~-----askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK  251 (504)
T KOG0624|consen  186 --------PWDASLRQARAKCYIAEGEPKKAIHDLKQ-----ASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLK  251 (504)
T ss_pred             --------cchhHHHHHHHHHHHhcCcHHHHHHHHHH-----HHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence                    36888888888999999999999887765     2222 223455555667778889999999988888764


Q ss_pred             --CCcc-c---hHHH---------HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHHhcCChHHHHHH
Q 036356          354 --KDVV-M---RSAM---------TVGYGLHGLGEEGWVLFHHIRKHGIEPR-----HQHYARVVDLLARAGYSNHAFKF  413 (462)
Q Consensus       354 --~~~~-~---~~~l---------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~  413 (462)
                        ||.. +   |-.|         +......+++.++++-.+...+  ..|.     ...+..+-..+...|++.+|++.
T Consensus       252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk--~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq  329 (504)
T KOG0624|consen  252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK--NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ  329 (504)
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--cCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence              4433 2   2111         1223445677777777777776  4444     22344555667778999999999


Q ss_pred             HHhC-CCCCC-HHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356          414 IMNM-PIELR-LSVRRALLSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       414 ~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                      ..+. .+.|| ..++---..+|.....++.|+..++...+
T Consensus       330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e  369 (504)
T KOG0624|consen  330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE  369 (504)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            9887 77776 77888888999999999999988876543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=0.0042  Score=53.65  Aligned_cols=319  Identities=11%  Similarity=-0.017  Sum_probs=207.8

Q ss_pred             chHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhh
Q 036356           84 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY  163 (462)
Q Consensus        84 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  163 (462)
                      .-+.+++..+.+-.++..|.+++.--.++..                 .+....+.|..+|-...++..|-..|+++   
T Consensus        11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p-----------------~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL---   70 (459)
T KOG4340|consen   11 GEFTAVVYRLIRDARYADAIQLLGSELERSP-----------------RSRAGLSLLGYCYYRLQEFALAAECYEQL---   70 (459)
T ss_pred             CchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            3467788888888899999999888777654                 47788888999999999999999999996   


Q ss_pred             hhhhcCCCCCchHHHH-HHHHHHhcCCcccHHHHhhccCC-CCcchHHHHHHHH---HhCc-hHHHHHHHhhhc-CCcch
Q 036356          164 YIGKSEYRNNVIVNTV-LIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMIVGY---GLHE-WSAFGSFDGLLS-NEENE  236 (462)
Q Consensus       164 ~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~li~~~---~~~~-~~a~~~~~~m~~-~~~~~  236 (462)
                          .-..|...-|.. -...+.+.+.+..|.++...|.+ ++...-..-+.+-   .... ..+..+.++... .+..+
T Consensus        71 ----~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~  146 (459)
T KOG4340|consen   71 ----GQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADG  146 (459)
T ss_pred             ----HhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccch
Confidence                223444444432 23456678899999999999886 3333222223322   2222 667777777753 44444


Q ss_pred             HHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHH
Q 036356          237 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI  316 (462)
Q Consensus       237 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  316 (462)
                      .+...-...+.|+++.|.+-|+...+-|--                .....||.-+. ..+.|+.+.|++...+.+++.|
T Consensus       147 ~in~gCllykegqyEaAvqkFqaAlqvsGy----------------qpllAYniALa-Hy~~~qyasALk~iSEIieRG~  209 (459)
T KOG4340|consen  147 QINLGCLLYKEGQYEAAVQKFQAALQVSGY----------------QPLLAYNLALA-HYSSRQYASALKHISEIIERGI  209 (459)
T ss_pred             hccchheeeccccHHHHHHHHHHHHhhcCC----------------CchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence            444444556999999999999998875431                34556766554 4567899999999999776665


Q ss_pred             HhhC---C-----CCc------hh--HHHHHHHH-------HHhcCCcchHHHHhccCCC-----CCccchHHHHHHHHh
Q 036356          317 GKSE---Y-----RNN------VI--VNTVLIDM-------YAKCGSVDLAPMFFDRTLD-----KDVVMRSAMTVGYGL  368 (462)
Q Consensus       317 ~~~~---~-----~p~------~~--~~~~li~~-------~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~  368 (462)
                      +...   +     .||      +.  .-+.++.+       +-+.|+.+.|.+-+-.|+.     .|.+|...+.-.=. 
T Consensus       210 r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-  288 (459)
T KOG4340|consen  210 RQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-  288 (459)
T ss_pred             hcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-
Confidence            5321   1     011      11  11233333       4578899999999999973     46677655433222 


Q ss_pred             cCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhCC---C-CCCHHHHHHHHHHHHc-cCChHHH
Q 036356          369 HGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNMP---I-ELRLSVRRALLSAWKI-PMQQWEN  442 (462)
Q Consensus       369 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~---~-~p~~~~~~~l~~~~~~-~~~~~~a  442 (462)
                      .+++....+-+.-+..  +.|- ..||.-++-.||+..-++-|-.++-+-.   + -.+...|+ |+.++.. +-..++|
T Consensus       289 ~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea  365 (459)
T KOG4340|consen  289 DARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEA  365 (459)
T ss_pred             cCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHH
Confidence            3444444444444554  4453 6899999999999999999999988751   1 12333444 3344333 3455666


Q ss_pred             HHHHH
Q 036356          443 MLQTI  447 (462)
Q Consensus       443 ~~~~~  447 (462)
                      ...+.
T Consensus       366 ~KKL~  370 (459)
T KOG4340|consen  366 FKKLD  370 (459)
T ss_pred             HHHHH
Confidence            65554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.78  E-value=0.00089  Score=67.99  Aligned_cols=193  Identities=9%  Similarity=-0.037  Sum_probs=99.8

Q ss_pred             CChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh----hccCCChhhHHHHHHhhcCCCcchH
Q 036356           11 CTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY----HLWSRTEWSAFGSFDGLLSNEENEY   86 (462)
Q Consensus        11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~m~~~~~~~~   86 (462)
                      ..+..|+..+-..+++++|.++.+...+..            |+...+-.+    +.+.++..++..+            
T Consensus        32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~------------P~~i~~yy~~G~l~~q~~~~~~~~lv------------   87 (906)
T PRK14720         32 KELDDLIDAYKSENLTDEAKDICEEHLKEH------------KKSISALYISGILSLSRRPLNDSNLL------------   87 (906)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------------CcceehHHHHHHHHHhhcchhhhhhh------------
Confidence            347788999989999999999998776664            344433222    4444444444333            


Q ss_pred             HHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhh
Q 036356           87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG  166 (462)
Q Consensus        87 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  166 (462)
                       .++.......++.....++..|...+-                  +...+..+..+|-+.|+.++|..+|++.     .
T Consensus        88 -~~l~~~~~~~~~~~ve~~~~~i~~~~~------------------~k~Al~~LA~~Ydk~g~~~ka~~~yer~-----L  143 (906)
T PRK14720         88 -NLIDSFSQNLKWAIVEHICDKILLYGE------------------NKLALRTLAEAYAKLNENKKLKGVWERL-----V  143 (906)
T ss_pred             -hhhhhcccccchhHHHHHHHHHHhhhh------------------hhHHHHHHHHHHHHcCChHHHHHHHHHH-----H
Confidence             233333333333333333344433322                  2334444455555555555555555554     2


Q ss_pred             hcCCCCCchHHHHHHHHHHhcCCcccHHHHh--------------------hccCCCCcchHHHHHHHHHhCchHHHHHH
Q 036356          167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF--------------------DRTLDKDVVMRSAMIVGYGLHEWSAFGSF  226 (462)
Q Consensus       167 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~--------------------~~m~~~~~~~~~~li~~~~~~~~~a~~~~  226 (462)
                      +.. +-|..+.|.+...|+.. ++++|+.++                    .++...++.-...           -+.+.
T Consensus       144 ~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~-----------f~~i~  210 (906)
T PRK14720        144 KAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDF-----------FLRIE  210 (906)
T ss_pred             hcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchH-----------HHHHH
Confidence            222 22344444455555444 555554444                    4443322222111           11222


Q ss_pred             Hhhhc-----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhC
Q 036356          227 DGLLS-----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG  264 (462)
Q Consensus       227 ~~m~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  264 (462)
                      +.+..     --..++-.+-..|...++++++..++..+.+..
T Consensus       211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~  253 (906)
T PRK14720        211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD  253 (906)
T ss_pred             HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence            22222     123345556677888899999999999998865

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.77  E-value=0.0023  Score=54.33  Aligned_cols=150  Identities=11%  Similarity=0.039  Sum_probs=122.4

Q ss_pred             HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHH
Q 036356          289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVG  365 (462)
Q Consensus       289 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~  365 (462)
                      ..+-..+...|+-+....+.....      .....+....+..+....+.|++..|...|++...   +|...|+.+.-+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~------~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa  143 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSA------IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA  143 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhh------ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence            556667777888888877766521      12233455666688889999999999999998874   688899999999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHH
Q 036356          366 YGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKIPMQQWEN  442 (462)
Q Consensus       366 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a  442 (462)
                      |.+.|+.+.|..-+.+..+  +.|+ ...++-+.-.+.-.|+.+.|..++...  .-..|..+-..|.......|++.+|
T Consensus       144 ldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A  221 (257)
T COG5010         144 LDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA  221 (257)
T ss_pred             HHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence            9999999999999999998  8887 677888888999999999999999988  3233788888899999999999988


Q ss_pred             HHHH
Q 036356          443 MLQT  446 (462)
Q Consensus       443 ~~~~  446 (462)
                      ....
T Consensus       222 ~~i~  225 (257)
T COG5010         222 EDIA  225 (257)
T ss_pred             Hhhc
Confidence            7544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.77  E-value=0.0017  Score=65.22  Aligned_cols=130  Identities=10%  Similarity=-0.031  Sum_probs=102.9

Q ss_pred             CCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--CC-ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHH
Q 036356          320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD-VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYA  395 (462)
Q Consensus       320 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~  395 (462)
                      .+..+...+-.|.....+.|..++|..+++...+  || ......+...+.+.+++++|+...++...  ..|+ .....
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~  158 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL  158 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence            3455677788888888889999999999988773  54 44566788888899999999999999888  6777 55667


Q ss_pred             HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356          396 RVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       396 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                      .+..++.+.|++++|..+|++. .-.| +...+..+..++...|+.++|...+.+.+.
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7777888899999999999988 2234 477888888888999999988877766543

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.76  E-value=3.2e-05  Score=43.02  Aligned_cols=26  Identities=42%  Similarity=0.644  Sum_probs=21.9

Q ss_pred             eeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356          135 TLRNAMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus       135 ~~~~~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      ++||++|++|++.|++++|.++|++|
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M   26 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEM   26 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHH
Confidence            47888888888888888888888887

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.75  E-value=0.00038  Score=58.65  Aligned_cols=114  Identities=11%  Similarity=0.018  Sum_probs=71.9

Q ss_pred             CCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHH
Q 036356           65 SRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMI  141 (462)
Q Consensus        65 ~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li  141 (462)
                      .++.++++..++..   .+.|...|..+...+...|+++.|...|++..+..+                 .+...+..+.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----------------~~~~~~~~lA  114 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-----------------ENAELYAALA  114 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CCHHHHHHHH
Confidence            44555666666655   445566677777777777777777777777776654                 4556666666


Q ss_pred             HHH-HhCCC--hhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC
Q 036356          142 SGY-AKNGY--AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL  201 (462)
Q Consensus       142 ~~~-~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  201 (462)
                      .++ ...|+  .++|.+++++.     . ..-+-+..++..+...+.+.|++++|+..++++.
T Consensus       115 ~aL~~~~g~~~~~~A~~~l~~a-----l-~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370        115 TVLYYQAGQHMTPQTREMIDKA-----L-ALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHhcCCCCcHHHHHHHHHH-----H-HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            653 55555  47777777774     2 2222345566666677777777777777777665

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.75  E-value=0.00057  Score=63.33  Aligned_cols=122  Identities=13%  Similarity=0.156  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCC---CccchHHHH
Q 036356          287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK---DVVMRSAMT  363 (462)
Q Consensus       287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li  363 (462)
                      .-..++..+...++++.|.++|++     +....  |+.  ...++..+...++-.+|.+++++..+.   +......-.
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~-----L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa  241 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEK-----LRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQA  241 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHH-----HHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            345566777788999999999999     44443  553  445788888888888999999887753   333444445


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 036356          364 VGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNMPI  419 (462)
Q Consensus       364 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~  419 (462)
                      ..|.+.++++.|+++.+++..  ..|+ ..+|..|..+|.+.|+++.|+-.++.++.
T Consensus       242 ~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  242 EFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             HHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            678899999999999999999  8898 67999999999999999999999998843

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.73  E-value=0.042  Score=51.72  Aligned_cols=75  Identities=7%  Similarity=0.086  Sum_probs=59.4

Q ss_pred             CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--CCcchHH
Q 036356          132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRS  209 (462)
Q Consensus       132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~  209 (462)
                      -|..+|+.||.-+... .++++.+.++++      -.-.+.....|..-|..-.+..+++.++++|.+...  -+...|.
T Consensus        18 ~di~sw~~lire~qt~-~~~~~R~~YEq~------~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~   90 (656)
T KOG1914|consen   18 YDIDSWSQLIREAQTQ-PIDKVRETYEQL------VNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWK   90 (656)
T ss_pred             ccHHHHHHHHHHHccC-CHHHHHHHHHHH------hccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHH
Confidence            5889999999987776 999999999997      333445677889999999999999999999987652  3555555


Q ss_pred             HHHH
Q 036356          210 AMIV  213 (462)
Q Consensus       210 ~li~  213 (462)
                      .-+.
T Consensus        91 lYl~   94 (656)
T KOG1914|consen   91 LYLS   94 (656)
T ss_pred             HHHH
Confidence            5554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.68  E-value=0.0012  Score=55.70  Aligned_cols=95  Identities=13%  Similarity=0.173  Sum_probs=46.5

Q ss_pred             CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHH-HhcCC--cchHHHHhccCCC---CC
Q 036356          283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMY-AKCGS--VDLAPMFFDRTLD---KD  355 (462)
Q Consensus       283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~~~~---~~  355 (462)
                      .|...|..+...|...|++++|...|++.+       ...| +...+..+..++ ...|+  .++|.+++++..+   .+
T Consensus        71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al-------~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~  143 (198)
T PRK10370         71 QNSEQWALLGEYYLWRNDYDNALLAYRQAL-------QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE  143 (198)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC
Confidence            355555555555666666666666665521       1222 334444444432 34444  2455555554442   23


Q ss_pred             ccchHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356          356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRK  384 (462)
Q Consensus       356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~  384 (462)
                      ...+..+...+...|++++|...|+++.+
T Consensus       144 ~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        144 VTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34444555555555555555555555544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.62  E-value=0.034  Score=51.70  Aligned_cols=130  Identities=18%  Similarity=0.099  Sum_probs=78.2

Q ss_pred             CccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-
Q 036356          246 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-  324 (462)
Q Consensus       246 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-  324 (462)
                      ..|.+++|+..+..+.+..                 +-|...+....+.+.+.|+.++|.+.+++.+       ...|+ 
T Consensus       318 ~~~~~d~A~~~l~~L~~~~-----------------P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal-------~l~P~~  373 (484)
T COG4783         318 LAGQYDEALKLLQPLIAAQ-----------------PDNPYYLELAGDILLEANKAKEAIERLKKAL-------ALDPNS  373 (484)
T ss_pred             HhcccchHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-------hcCCCc
Confidence            4566677777777666542                 1344455555666777777777777776632       23344 


Q ss_pred             hhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036356          325 VIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL  401 (462)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  401 (462)
                      ....-.+.++|.+.|+..+|.++++...   ..|...|..|..+|...|+..++..-..                  ++|
T Consensus       374 ~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~  435 (484)
T COG4783         374 PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGY  435 (484)
T ss_pred             cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHH
Confidence            3444455666777777777777776654   2356667777777777777666554333                  334


Q ss_pred             HhcCChHHHHHHHHhC
Q 036356          402 ARAGYSNHAFKFIMNM  417 (462)
Q Consensus       402 ~~~g~~~~A~~~~~~m  417 (462)
                      ...|++++|+..+...
T Consensus       436 ~~~G~~~~A~~~l~~A  451 (484)
T COG4783         436 ALAGRLEQAIIFLMRA  451 (484)
T ss_pred             HhCCCHHHHHHHHHHH
Confidence            4566666666666555

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.61  E-value=0.00032  Score=65.32  Aligned_cols=118  Identities=13%  Similarity=0.017  Sum_probs=95.4

Q ss_pred             hCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-C-----CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 036356          319 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-K-----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQ  392 (462)
Q Consensus       319 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  392 (462)
                      .+...+......+++.+....+++.+..++.+... |     -..|..++|+.|.+.|..+.++.+++.=..-|+.||..
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            34555777788888888888888888888877663 2     22355699999999999999999999988889999999


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHcc
Q 036356          393 HYARVVDLLARAGYSNHAFKFIMNM---PIELRLSVRRALLSAWKIP  436 (462)
Q Consensus       393 ~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~l~~~~~~~  436 (462)
                      +++.|++.+.+.|++..|.++..+|   ....+..|+..-+.+|.+.
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999999888   4445566666656666655

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PLN02789 farnesyltranstransferase

Probab=97.60  E-value=0.0073  Score=54.88  Aligned_cols=197  Identities=10%  Similarity=-0.097  Sum_probs=138.3

Q ss_pred             hccCCChhhHHHHHHhh--cCCC-cchHHHHHHhhcCcc-chhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeH
Q 036356           62 HLWSRTEWSAFGSFDGL--LSNE-ENEYGTALDCSCDLE-FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR  137 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~~~-~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~  137 (462)
                      +...++.++|+.+..++  ..|+ ..+|+.--.++...| +++++...++++.+...                 .+..+|
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-----------------knyqaW  109 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-----------------KNYQIW  109 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-----------------cchHHh
Confidence            66677889999999998  4444 446666666666667 68999999999998876                 566678


Q ss_pred             HHHHHHHHhCCCh--hHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHHHHH
Q 036356          138 NAMISGYAKNGYA--EEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMI  212 (462)
Q Consensus       138 ~~li~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li  212 (462)
                      +.--..+.+.|+.  ++++.+++++     .+. -+-+..+|+....++.+.|+++++++.++++.+   .|...|+...
T Consensus       110 ~~R~~~l~~l~~~~~~~el~~~~ka-----l~~-dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~  183 (320)
T PLN02789        110 HHRRWLAEKLGPDAANKELEFTRKI-----LSL-DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRY  183 (320)
T ss_pred             HHHHHHHHHcCchhhHHHHHHHHHH-----HHh-CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHH
Confidence            7665555666653  6778888886     222 234677888888888899999999999999875   4566677665


Q ss_pred             HHHHhC----c-----hHHHHHHHhhhc---CCcchHHHHHHhhcC----ccchhhhHHHHHHHHHhCCCcchHHHHHHH
Q 036356          213 VGYGLH----E-----WSAFGSFDGLLS---NEENEYGTALDCSCD----LEFLEQGKIVHGFMIKLGLELESDLLISLT  276 (462)
Q Consensus       213 ~~~~~~----~-----~~a~~~~~~m~~---~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  276 (462)
                      ..+.+.    +     ++++....+...   -|...|+-+...+..    .+...+|.+++.+..+.+.           
T Consensus       184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-----------  252 (320)
T PLN02789        184 FVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-----------  252 (320)
T ss_pred             HHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-----------
Confidence            554443    1     356666656655   566778777777766    2445668788877666432           


Q ss_pred             HhhcCCCCHhHHHHHHHHHHcC
Q 036356          277 AVCRYQPNVTLWNAMISGYAKN  298 (462)
Q Consensus       277 ~~~~~~~~~~~~~~li~~~~~~  298 (462)
                            .+......+++.|+..
T Consensus       253 ------~s~~al~~l~d~~~~~  268 (320)
T PLN02789        253 ------NHVFALSDLLDLLCEG  268 (320)
T ss_pred             ------CcHHHHHHHHHHHHhh
Confidence                  4566677777777753

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.57  E-value=0.00054  Score=53.93  Aligned_cols=97  Identities=7%  Similarity=-0.074  Sum_probs=71.5

Q ss_pred             cchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhh
Q 036356           83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD  162 (462)
Q Consensus        83 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  162 (462)
                      ......+...+.+.|++++|...++.+...+.                 .+...|..+...+.+.|++++|..+|+..  
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~--   77 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-----------------YNSRYWLGLAACCQMLKEYEEAIDAYALA--   77 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            34455666677778888888888888877665                 56677777888888888888888888874  


Q ss_pred             hhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC
Q 036356          163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD  202 (462)
Q Consensus       163 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  202 (462)
                         ... .+.+..++..+...|...|++++|...|++..+
T Consensus        78 ---~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        78 ---AAL-DPDDPRPYFHAAECLLALGEPESALKALDLAIE  113 (135)
T ss_pred             ---Hhc-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               222 244566677777788888888888888877653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.55  E-value=0.00057  Score=53.79  Aligned_cols=85  Identities=15%  Similarity=0.089  Sum_probs=39.0

Q ss_pred             HHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCC
Q 036356          331 LIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGY  406 (462)
Q Consensus       331 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~  406 (462)
                      +...+...|++++|...|+...+   .+...|..+...+...|++++|..+++...+  ..|+ ...+..+...+...|+
T Consensus        23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~  100 (135)
T TIGR02552        23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA--LDPDDPRPYFHAAECLLALGE  100 (135)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHcCC
Confidence            33344444444444444444321   1333444444445555555555555555444  2232 3444444445555555


Q ss_pred             hHHHHHHHHhC
Q 036356          407 SNHAFKFIMNM  417 (462)
Q Consensus       407 ~~~A~~~~~~m  417 (462)
                      +++|.+.++..
T Consensus       101 ~~~A~~~~~~a  111 (135)
T TIGR02552       101 PESALKALDLA  111 (135)
T ss_pred             HHHHHHHHHHH
Confidence            55555555544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN02789 farnesyltranstransferase

Probab=97.55  E-value=0.013  Score=53.36  Aligned_cols=125  Identities=12%  Similarity=-0.047  Sum_probs=74.7

Q ss_pred             hhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCC-ChhHHHHHHHHhhhhhhhhcCC
Q 036356           92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNG-YAEEAVKLFPKWMDYYIGKSEY  170 (462)
Q Consensus        92 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~  170 (462)
                      .+...+..++|..+.+++++..+                 -+..+|+.--..+...| ++++++..++++     ... -
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP-----------------~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~-----i~~-n  102 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNP-----------------GNYTVWHFRRLCLEALDADLEEELDFAEDV-----AED-N  102 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCc-----------------hhHHHHHHHHHHHHHcchhHHHHHHHHHHH-----HHH-C
Confidence            34455678888888888887754                 34455665555555666 578888888886     222 2


Q ss_pred             CCCchHHHHHHHHHHhcCCc--ccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCcc
Q 036356          171 RNNVIVNTVLIDMYAKCGSV--DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLE  248 (462)
Q Consensus       171 ~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~  248 (462)
                      +-+..+|+..-..+.+.|+.  +++..+++++.+.|..                          |..+|+....++.+.|
T Consensus       103 pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk--------------------------Ny~AW~~R~w~l~~l~  156 (320)
T PLN02789        103 PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK--------------------------NYHAWSHRQWVLRTLG  156 (320)
T ss_pred             CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc--------------------------cHHHHHHHHHHHHHhh
Confidence            23344555444444444542  3445555555443332                          2334444445555667


Q ss_pred             chhhhHHHHHHHHHhCC
Q 036356          249 FLEQGKIVHGFMIKLGL  265 (462)
Q Consensus       249 ~~~~a~~~~~~~~~~~~  265 (462)
                      +++++++.++.+++.+.
T Consensus       157 ~~~eeL~~~~~~I~~d~  173 (320)
T PLN02789        157 GWEDELEYCHQLLEEDV  173 (320)
T ss_pred             hHHHHHHHHHHHHHHCC
Confidence            78888888888887764

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.53  E-value=0.0018  Score=47.34  Aligned_cols=90  Identities=12%  Similarity=0.103  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC-CCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHH
Q 036356          287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG  365 (462)
Q Consensus       287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~  365 (462)
                      +-...|..+...+++.....+|+.     +++.|+ .|++.+|+.++.+.+++.--.                       
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqs-----lkRN~i~lPsv~~Yn~VL~Si~~R~lD~-----------------------   78 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQS-----LKRNGITLPSVELYNKVLKSIAKRELDS-----------------------   78 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHH-----HHhcCCCCCcHHHHHHHHHHHHHccccc-----------------------
Confidence            344556677777999999999998     889999 999999999998887743211                       


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 036356          366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA  404 (462)
Q Consensus       366 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  404 (462)
                      ..-.++.-..+.+++.|...+++|+..||+.++..+.+.
T Consensus        79 ~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llkg  117 (120)
T PF08579_consen   79 EDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLKG  117 (120)
T ss_pred             hhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHh
Confidence            112334566788999999999999999999999988763

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.53  E-value=0.0056  Score=61.56  Aligned_cols=141  Identities=9%  Similarity=0.021  Sum_probs=114.8

Q ss_pred             CCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--C-Ccc
Q 036356          282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVV  357 (462)
Q Consensus       282 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~  357 (462)
                      ..++..+-.|.....+.|+.++|+.+++..       ..+.|+ ......+..++.+.+++++|....++..+  | +..
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~-------~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~  155 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGI-------HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR  155 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHH-------HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH
Confidence            356888888999999999999999999884       346676 55667788899999999999999998875  4 334


Q ss_pred             chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 036356          358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLS  431 (462)
Q Consensus       358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~  431 (462)
                      ....+..++...|++++|..+|++...  -.|+ ..++..+..++-+.|+.++|...|+..  ...|...-|+.++.
T Consensus       156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~  230 (694)
T PRK15179        156 EILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV  230 (694)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence            556777888999999999999999998  4455 788999999999999999999999998  34455566555443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.53  E-value=0.019  Score=49.01  Aligned_cols=238  Identities=12%  Similarity=0.036  Sum_probs=137.3

Q ss_pred             HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc-
Q 036356          141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-  219 (462)
Q Consensus       141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~-  219 (462)
                      ++-+-=.|++..++..-+..       .+.+.+...-.-+-++|...|+......-...-..+...... ++..|.... 
T Consensus        15 iRn~fY~Gnyq~~ine~~~~-------~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr-~~a~~~~~e~   86 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKF-------SSSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVR-LLAEYLELES   86 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhh-------ccccchhHHHHHHHHHHHHcccccccccccccccCChHHHHH-HHHHHhhCcc
Confidence            34444557777777665553       111122222233566777777766544333322222222111 122222222 


Q ss_pred             ---hHHHHHHHhhhcC----CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHH
Q 036356          220 ---WSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI  292 (462)
Q Consensus       220 ---~~a~~~~~~m~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li  292 (462)
                         +...++.+.+..+    +......-...|++.+++++|++.....                      -+......=.
T Consensus        87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----------------------~~lE~~Al~V  144 (299)
T KOG3081|consen   87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----------------------ENLEAAALNV  144 (299)
T ss_pred             hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----------------------chHHHHHHHH
Confidence               3334444444442    2222333445688999999999987752                      1222222223


Q ss_pred             HHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh----cCCcchHHHHhccCCC---CCccchHHHHHH
Q 036356          293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTLD---KDVVMRSAMTVG  365 (462)
Q Consensus       293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~  365 (462)
                      ..+.+..+.+-|.+.+++|.     .-   -+..|.+-|..++.+    .+.+.+|.-+|++|.+   |+..+.+....+
T Consensus       145 qI~lk~~r~d~A~~~lk~mq-----~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~  216 (299)
T KOG3081|consen  145 QILLKMHRFDLAEKELKKMQ-----QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVC  216 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHH
Confidence            44667788999999998843     21   244566666666654    4568999999999986   566666777888


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh-HHHHHHHHhC
Q 036356          366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYS-NHAFKFIMNM  417 (462)
Q Consensus       366 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m  417 (462)
                      +...|++++|..++++...+.-. +..+..-++-.-.-.|.. +-..+.+...
T Consensus       217 ~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QL  268 (299)
T KOG3081|consen  217 HLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQL  268 (299)
T ss_pred             HHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            88899999999999999985322 244544444444444544 3344455555

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.50  E-value=0.016  Score=53.05  Aligned_cols=146  Identities=15%  Similarity=0.132  Sum_probs=111.0

Q ss_pred             cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356          234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD  313 (462)
Q Consensus       234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  313 (462)
                      ..+|...+++-.+...++.|..+|-...+.|+.               .+++..++++|..++ .|+..-|.++|+-=  
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~---------------~h~vyi~~A~~E~~~-~~d~~ta~~ifelG--  458 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV---------------GHHVYIYCAFIEYYA-TGDRATAYNIFELG--  458 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC---------------CcceeeeHHHHHHHh-cCCcchHHHHHHHH--
Confidence            456777888888888899999999999999863               688999999998776 56778888888752  


Q ss_pred             HHHHhhCCCCchhH-HHHHHHHHHhcCCcchHHHHhccCCC---CC--ccchHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036356          314 YYIGKSEYRNNVIV-NTVLIDMYAKCGSVDLAPMFFDRTLD---KD--VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI  387 (462)
Q Consensus       314 ~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~---~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  387 (462)
                        |   ...||... -+..+.-+...++-+.|..+|+...+   .+  ...|..+|.--..-|+...+..+=++|..  +
T Consensus       459 --l---~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~  531 (660)
T COG5107         459 --L---LKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--L  531 (660)
T ss_pred             --H---HhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--H
Confidence              1   12344433 35566777888999999999996653   23  45788899888889999988888888888  7


Q ss_pred             CCCHhHHHHHHHHHHhc
Q 036356          388 EPRHQHYARVVDLLARA  404 (462)
Q Consensus       388 ~p~~~~~~~li~~~~~~  404 (462)
                      -|...+.......|.-.
T Consensus       532 ~pQen~~evF~Sry~ik  548 (660)
T COG5107         532 VPQENLIEVFTSRYAIK  548 (660)
T ss_pred             cCcHhHHHHHHHHHhhh
Confidence            77777766666666543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.49  E-value=0.00026  Score=50.37  Aligned_cols=80  Identities=9%  Similarity=0.073  Sum_probs=53.0

Q ss_pred             cCChHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChHHHHHHH
Q 036356          369 HGLGEEGWVLFHHIRKHGI-EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRL-SVRRALLSAWKIPMQQWENMLQT  446 (462)
Q Consensus       369 ~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~  446 (462)
                      .|+++.|+.+++++.+..- .|+...+..+..+|.+.|++++|..+++..+..|+. .....+..++...|++++|+..+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            4678888888888887422 123445555788888888888888888775333332 44445677888888888888776


Q ss_pred             Hh
Q 036356          447 IR  448 (462)
Q Consensus       447 ~~  448 (462)
                      .+
T Consensus        82 ~~   83 (84)
T PF12895_consen   82 EK   83 (84)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.39  E-value=0.1  Score=47.46  Aligned_cols=140  Identities=12%  Similarity=-0.017  Sum_probs=101.9

Q ss_pred             hHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHH
Q 036356          286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG  365 (462)
Q Consensus       286 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~  365 (462)
                      .+.+..|.-+...|+...|.++-.+        -.+ |+...|-.-+.+|+..++|++-.++-..  +..+.-|..++.+
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~--------Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~  246 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKE--------FKV-PDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEA  246 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHH--------cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHH
Confidence            3455667777788988888888655        233 7888899999999999999988887654  4567889999999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 036356          366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQ  445 (462)
Q Consensus       366 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~  445 (462)
                      |.+.|+..+|..+..+          .++..-+..|.+.|++.+|.+.--+.   .|...+..+.+-+-..+. ...+..
T Consensus       247 ~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~~~~~~-~~~~~~  312 (319)
T PF04840_consen  247 CLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRCPGNND-QLIADK  312 (319)
T ss_pred             HHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHCCCCCh-HHHHHH
Confidence            9999999999888877          22266778889999999998876665   366666666655443322 222234


Q ss_pred             HHhhh
Q 036356          446 TIRGI  450 (462)
Q Consensus       446 ~~~~~  450 (462)
                      +.+|+
T Consensus       313 i~~~~  317 (319)
T PF04840_consen  313 IEQML  317 (319)
T ss_pred             HHHHH
Confidence            55554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.39  E-value=0.0021  Score=47.00  Aligned_cols=76  Identities=11%  Similarity=0.079  Sum_probs=64.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcC--------ChHHHHHHHHhC---CCCCCHHHHH
Q 036356          360 SAMTVGYGLHGLGEEGWVLFHHIRKHGI-EPRHQHYARVVDLLARAG--------YSNHAFKFIMNM---PIELRLSVRR  427 (462)
Q Consensus       360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m---~~~p~~~~~~  427 (462)
                      ..-|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+.++..        +.-+.+.+++.|   +++|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            3456677778999999999999999999 999999999999988764        244567778888   8999999999


Q ss_pred             HHHHHHHc
Q 036356          428 ALLSAWKI  435 (462)
Q Consensus       428 ~l~~~~~~  435 (462)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            99998775

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.37  E-value=0.0034  Score=50.08  Aligned_cols=49  Identities=14%  Similarity=0.127  Sum_probs=21.7

Q ss_pred             HHHHHhcCCcchHHHHhccCCCC--CccchHHHHHHHHhcCChHHHHHHHH
Q 036356          332 IDMYAKCGSVDLAPMFFDRTLDK--DVVMRSAMTVGYGLHGLGEEGWVLFH  380 (462)
Q Consensus       332 i~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~  380 (462)
                      ...+...|++++|...++....+  ....+......|.+.|++++|...|+
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~  142 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ  142 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34444455555555555443321  11223334444555555555555444

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.023  Score=53.25  Aligned_cols=101  Identities=17%  Similarity=0.130  Sum_probs=82.1

Q ss_pred             HhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCC
Q 036356           91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY  170 (462)
Q Consensus        91 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  170 (462)
                      ++....|+++.|...|.+.+...+                 +|.+.|+.=..+|+..|++++|++=-.+       ...+
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~p-----------------~nhvlySnrsaa~a~~~~~~~al~da~k-------~~~l   65 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLSP-----------------TNHVLYSNRSAAYASLGSYEKALKDATK-------TRRL   65 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccCC-----------------CccchhcchHHHHHHHhhHHHHHHHHHH-------HHhc
Confidence            456788999999999999998887                 7999999999999999999999876655       3456


Q ss_pred             CCC-chHHHHHHHHHHhcCCcccHHHHhhccCCC---CcchHHHHHHHH
Q 036356          171 RNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLDK---DVVMRSAMIVGY  215 (462)
Q Consensus       171 ~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~  215 (462)
                      .|+ ..-|+-.-.++.-.|++++|+.-|.+-.+.   |...++.+..++
T Consensus        66 ~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   66 NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            666 568888999999999999999999987643   444555555555

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.32  E-value=0.003  Score=48.21  Aligned_cols=88  Identities=15%  Similarity=0.047  Sum_probs=44.0

Q ss_pred             HHHHHHHHHhcCCcchHHHHhccCCC--CCc----cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HhHHHHH
Q 036356          328 NTVLIDMYAKCGSVDLAPMFFDRTLD--KDV----VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR----HQHYARV  397 (462)
Q Consensus       328 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~l  397 (462)
                      +..+...+.+.|++++|...|+.+.+  |+.    ..+..+...+.+.|+++.|...|+.+...  .|+    ...+..+
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~   82 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHHH
Confidence            33444455555555555555555542  221    23334555555555555555555555542  122    2344445


Q ss_pred             HHHHHhcCChHHHHHHHHhC
Q 036356          398 VDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       398 i~~~~~~g~~~~A~~~~~~m  417 (462)
                      ..++.+.|++++|.+.++++
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~  102 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQV  102 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHH
Confidence            55555555555555555554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.31  E-value=0.0029  Score=45.53  Aligned_cols=90  Identities=11%  Similarity=0.038  Sum_probs=58.7

Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHc
Q 036356          359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKI  435 (462)
Q Consensus       359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~  435 (462)
                      |..+...+...|++++|...+++..+  ..|+ ...+..+...+...|++++|.+.++.. ...| +..++..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence            44556666677777777777777766  3444 355666677777777777777777765 3233 33466677777777


Q ss_pred             cCChHHHHHHHHhhh
Q 036356          436 PMQQWENMLQTIRGI  450 (462)
Q Consensus       436 ~~~~~~a~~~~~~~~  450 (462)
                      .|+.++|...+.+..
T Consensus        81 ~~~~~~a~~~~~~~~   95 (100)
T cd00189          81 LGKYEEALEAYEKAL   95 (100)
T ss_pred             HHhHHHHHHHHHHHH
Confidence            777777776655443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.29  E-value=0.00088  Score=55.33  Aligned_cols=98  Identities=12%  Similarity=0.165  Sum_probs=80.6

Q ss_pred             HHHHHHhh--cCCCcchHHHHHHhhc-----CccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHH
Q 036356           71 AFGSFDGL--LSNEENEYGTALDCSC-----DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISG  143 (462)
Q Consensus        71 A~~~~~~m--~~~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~  143 (462)
                      -.+.|+..  ...|-.+|..+++.+.     +.|.++-....+..|.+.|+                ..|..+|+.|++.
T Consensus        33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv----------------~kDL~~Y~~LLDv   96 (228)
T PF06239_consen   33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGV----------------EKDLEVYKALLDV   96 (228)
T ss_pred             hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCC----------------cccHHHHHHHHHh
Confidence            34555555  6678888999988885     45778888899999999999                8999999999988


Q ss_pred             HHhCC----------------ChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCC
Q 036356          144 YAKNG----------------YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS  189 (462)
Q Consensus       144 ~~~~g----------------~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~  189 (462)
                      +=+..                +-+-|++++++|     ...|+.||..++..+++.+++.+.
T Consensus        97 FPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qM-----E~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen   97 FPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQM-----ENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             CCCCCcccccHHHHHhccCcHHHHHHHHHHHHH-----HHcCCCCcHHHHHHHHHHhccccH
Confidence            77642                355689999999     899999999999999999977654

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.26  E-value=0.0017  Score=43.95  Aligned_cols=62  Identities=13%  Similarity=0.092  Sum_probs=50.5

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036356          367 GLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALL  430 (462)
Q Consensus       367 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~  430 (462)
                      ...|++++|.++|+++..  ..|+ ...+..+..+|.+.|++++|.++++.+ ...|+...|..++
T Consensus         2 l~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            467899999999999988  6674 777888999999999999999999999 6667765555544

...

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.25  E-value=0.0015  Score=60.95  Aligned_cols=100  Identities=12%  Similarity=0.008  Sum_probs=47.8

Q ss_pred             CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356           82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM  161 (462)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  161 (462)
                      +......+++.+....+++.+..++-+.....-  ..            .--..|..++++.|.+.|..+.++.+++.= 
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~--~~------------~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~-  129 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPN--CS------------YLLPSTHHALVRQCLELGAEDELLELLKNR-  129 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcc--cc------------cccCccHHHHHHHHHhcCCHHHHHHHHhCh-
Confidence            344445555555555555555555544443311  00            112233345555555555555555555543 


Q ss_pred             hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhcc
Q 036356          162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT  200 (462)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  200 (462)
                          ...|+-||..++|.||+.+.+.|++..|.++...|
T Consensus       130 ----~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~  164 (429)
T PF10037_consen  130 ----LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEM  164 (429)
T ss_pred             ----hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHH
Confidence                44555555555555555555555555555554444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.24  E-value=0.15  Score=46.37  Aligned_cols=109  Identities=12%  Similarity=-0.018  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 036356          327 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY  406 (462)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  406 (462)
                      +.+.-|.-+...|+...|.++-.+..-||..-|-.-+.+++..+++++-.++-..    .-  .+.-|..++.+|.+.|+
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~  252 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGN  252 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCC
Confidence            4445566777889999999999999889999999999999999999987776432    22  34789999999999999


Q ss_pred             hHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356          407 SNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIR  448 (462)
Q Consensus       407 ~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  448 (462)
                      ..+|..++.+++       +..-+..|.+.|++.+|.....+
T Consensus       253 ~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  253 KKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999853       25556777888888888766544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.24  E-value=0.0028  Score=48.36  Aligned_cols=93  Identities=14%  Similarity=0.045  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC--CCchhHHHHHHHHHHhcCCcchHHHHhccCCC--CC----ccc
Q 036356          287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY--RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD----VVM  358 (462)
Q Consensus       287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~  358 (462)
                      ++......+.+.|++++|.+.|...+     ....  ......+..+..++.+.|+++.|...|+.+..  |+    ..+
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   78 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFL-----KKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA   78 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-----HHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence            34445555555566666666655532     1110  11122334455555555555556555555442  22    123


Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356          359 RSAMTVGYGLHGLGEEGWVLFHHIRK  384 (462)
Q Consensus       359 ~~~li~~~~~~~~~~~a~~~~~~m~~  384 (462)
                      +..+..++...|+.++|...++++.+
T Consensus        79 ~~~~~~~~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        79 LLKLGMSLQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            44445555555555666655555555

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.23  E-value=0.0019  Score=55.94  Aligned_cols=95  Identities=20%  Similarity=0.224  Sum_probs=56.9

Q ss_pred             HHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCCCC---ccchHHHHHHHHhcC
Q 036356          295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD---VVMRSAMTVGYGLHG  370 (462)
Q Consensus       295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~  370 (462)
                      +.+.+++++|+..|.+.|       .+.| |.+.|..=..+|++.|.++.|++--+....-|   ..+|..|-.+|...|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI-------~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAI-------ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHhhhHHHHHHHHHHHH-------hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            666666777777666643       2444 34444445566666676666666655554322   345666666666666


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036356          371 LGEEGWVLFHHIRKHGIEPRHQHYARVV  398 (462)
Q Consensus       371 ~~~~a~~~~~~m~~~g~~p~~~~~~~li  398 (462)
                      ++++|++.|++..+  +.|+-.+|..=+
T Consensus       164 k~~~A~~aykKaLe--ldP~Ne~~K~nL  189 (304)
T KOG0553|consen  164 KYEEAIEAYKKALE--LDPDNESYKSNL  189 (304)
T ss_pred             cHHHHHHHHHhhhc--cCCCcHHHHHHH
Confidence            77777666666666  666665554433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.14  E-value=0.0018  Score=46.66  Aligned_cols=85  Identities=18%  Similarity=0.238  Sum_probs=44.7

Q ss_pred             HHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCC
Q 036356          331 LIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGY  406 (462)
Q Consensus       331 li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~  406 (462)
                      +...+...|++++|...++...+  | +...+..+...+...+++++|.+.++....  ..|+ ..++..+...+...|+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHHHHh
Confidence            34444445555555555554432  1 223344455555555666666666666555  2233 2455555666666666


Q ss_pred             hHHHHHHHHhC
Q 036356          407 SNHAFKFIMNM  417 (462)
Q Consensus       407 ~~~A~~~~~~m  417 (462)
                      +++|...+...
T Consensus        84 ~~~a~~~~~~~   94 (100)
T cd00189          84 YEEALEAYEKA   94 (100)
T ss_pred             HHHHHHHHHHH
Confidence            66666665554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.12  E-value=0.039  Score=49.55  Aligned_cols=125  Identities=10%  Similarity=0.089  Sum_probs=68.0

Q ss_pred             HHHHcC-CChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC----CCcc------chHH
Q 036356          293 SGYAKN-GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD----KDVV------MRSA  361 (462)
Q Consensus       293 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~------~~~~  361 (462)
                      ..|-+. |++++|.+.|.+..+-+-......--...+..+...+.+.|++++|..+|++...    .+..      .|-.
T Consensus       122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~  201 (282)
T PF14938_consen  122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK  201 (282)
T ss_dssp             HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence            345555 6777777777776543222221111244556667778888888888888876531    1111      1222


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HhHHHHHHHHHHhc--CChHHHHHHHHhC
Q 036356          362 MTVGYGLHGLGEEGWVLFHHIRKH--GIEPR--HQHYARVVDLLARA--GYSNHAFKFIMNM  417 (462)
Q Consensus       362 li~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~li~~~~~~--g~~~~A~~~~~~m  417 (462)
                      .+-++...||+..|.+.+++....  ++..+  ......|+.+|-..  ..+++|+.-|+.+
T Consensus       202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~  263 (282)
T PF14938_consen  202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI  263 (282)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence            344556678888888888888764  22222  34455666666442  3455566666665

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.10  E-value=0.0036  Score=56.02  Aligned_cols=143  Identities=15%  Similarity=0.061  Sum_probs=102.9

Q ss_pred             chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHH
Q 036356          235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY  314 (462)
Q Consensus       235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  314 (462)
                      .+|..+++..-+.+..+.|+.+|....+.+..               ..++....+++. |...++.+.|..+|+..+  
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~---------------~~~vy~~~A~~E-~~~~~d~~~A~~Ife~gl--   63 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC---------------TYHVYVAYALME-YYCNKDPKRARKIFERGL--   63 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS----------------THHHHHHHHHH-HHTCS-HHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC---------------CHHHHHHHHHHH-HHhCCCHHHHHHHHHHHH--
Confidence            36778888888889999999999999865421               233333333333 333567777999999853  


Q ss_pred             HHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C----CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036356          315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE  388 (462)
Q Consensus       315 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  388 (462)
                        +.  +..+...|...++.+.+.|+.+.|..+|++...  +    -...|...+.-=.+.|+.+.+.++.+++.+  ..
T Consensus        64 --k~--f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~  137 (280)
T PF05843_consen   64 --KK--FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LF  137 (280)
T ss_dssp             --HH--HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HT
T ss_pred             --HH--CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hh
Confidence              22  445677888889999999999999999998764  2    234899999999999999999999999998  67


Q ss_pred             CCHhHHHHHHHHH
Q 036356          389 PRHQHYARVVDLL  401 (462)
Q Consensus       389 p~~~~~~~li~~~  401 (462)
                      |+......+++-|
T Consensus       138 ~~~~~~~~f~~ry  150 (280)
T PF05843_consen  138 PEDNSLELFSDRY  150 (280)
T ss_dssp             TTS-HHHHHHCCT
T ss_pred             hhhhHHHHHHHHh
Confidence            7766666666554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.09  E-value=0.00043  Score=49.24  Aligned_cols=77  Identities=19%  Similarity=0.147  Sum_probs=58.0

Q ss_pred             CCChhhHHHHHHhh--cCC---CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHH
Q 036356           65 SRTEWSAFGSFDGL--LSN---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNA  139 (462)
Q Consensus        65 ~~~~~~A~~~~~~m--~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~  139 (462)
                      +|+++.|+.+|+++  ..|   +...+..+..++.+.|++++|..+++. .+.+.                 .+....-.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-----------------~~~~~~~l   63 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-----------------SNPDIHYL   63 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-----------------CHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-----------------CCHHHHHH
Confidence            58899999999999  444   344566688999999999999999998 43333                 23344445


Q ss_pred             HHHHHHhCCChhHHHHHHHH
Q 036356          140 MISGYAKNGYAEEAVKLFPK  159 (462)
Q Consensus       140 li~~~~~~g~~~~a~~~~~~  159 (462)
                      +..++.+.|++++|++.|++
T Consensus        64 ~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   64 LARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHhc
Confidence            67889999999999999875

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.036  Score=46.99  Aligned_cols=143  Identities=11%  Similarity=0.095  Sum_probs=71.1

Q ss_pred             HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHH-HHHHHhcCCcchHHHHhccCCCC---CccchHHHH
Q 036356          288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL-IDMYAKCGSVDLAPMFFDRTLDK---DVVMRSAMT  363 (462)
Q Consensus       288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li  363 (462)
                      |..++-+....|+.+.|...++.     +.. .+ |...-...| .--+...|.+++|.++++...+.   |.++|-.=+
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~-----L~~-~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl  127 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQ-----LRD-RF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL  127 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHH-----HHH-hC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence            44445555556666666666655     222 12 222111111 11133355666666666666532   333444333


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCC
Q 036356          364 VGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQ  438 (462)
Q Consensus       364 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~  438 (462)
                      -..-..|+.-+|++-+.+..+ -+..|...|.-+.+.|...|++++|.-.++++ -+.| ++..+..+...+...|.
T Consensus       128 Ailka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg  203 (289)
T KOG3060|consen  128 AILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG  203 (289)
T ss_pred             HHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence            334444555555555555554 13334666666666666666666666666666 2333 44444555555555543

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.02  E-value=0.0086  Score=49.66  Aligned_cols=102  Identities=12%  Similarity=0.102  Sum_probs=73.2

Q ss_pred             CCcchHHHHHHhhc-----CccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHH--cCCChhHH
Q 036356          232 NEENEYGTALDCSC-----DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYA--KNGYAEEA  304 (462)
Q Consensus       232 ~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~--~~~~~~~a  304 (462)
                      .+..+|..++..+.     +.|.++-....+..|.+-|+.-|..+|+.|++.+  +.+..+-.+++.+-.  .-.+-+-|
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvF--PKg~fvp~n~fQ~~F~hyp~Qq~c~  122 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVF--PKGKFVPRNFFQAEFMHYPRQQECA  122 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhC--CCCCcccccHHHHHhccCcHHHHHH
Confidence            45555666665554     5677888888899999999999999999998883  112222222222211  13456778


Q ss_pred             HHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCC
Q 036356          305 VKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS  340 (462)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  340 (462)
                      ++++++     |...|+.||..++..+++.+++.+.
T Consensus       123 i~lL~q-----ME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  123 IDLLEQ-----MENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHH-----HHHcCCCCcHHHHHHHHHHhccccH
Confidence            899998     9999999999999999999988664

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.99  E-value=0.004  Score=57.84  Aligned_cols=90  Identities=11%  Similarity=-0.022  Sum_probs=51.0

Q ss_pred             HHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHH
Q 036356          335 YAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHA  410 (462)
Q Consensus       335 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A  410 (462)
                      +...|+++.|...|++..+   .+...|..+..+|...|++++|+..+++...  +.|+ ...|..+..+|...|++++|
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCHHHH
Confidence            3344555555555555442   2334455555666666666666666666666  4454 45566666666666666666


Q ss_pred             HHHHHhC-CCCCCHHHH
Q 036356          411 FKFIMNM-PIELRLSVR  426 (462)
Q Consensus       411 ~~~~~~m-~~~p~~~~~  426 (462)
                      +..+++. .+.|+....
T Consensus        90 ~~~~~~al~l~P~~~~~  106 (356)
T PLN03088         90 KAALEKGASLAPGDSRF  106 (356)
T ss_pred             HHHHHHHHHhCCCCHHH
Confidence            6666665 444444333

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.97  E-value=0.0062  Score=54.72  Aligned_cols=184  Identities=14%  Similarity=0.142  Sum_probs=108.1

Q ss_pred             HHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh
Q 036356          240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS  319 (462)
Q Consensus       240 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  319 (462)
                      ....|...+++++|...|....+.....+..           ..-...|......|.+. ++++|.+.+.+.+.-++...
T Consensus        41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~-----------~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G  108 (282)
T PF14938_consen   41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDK-----------FEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG  108 (282)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H-----------HHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence            3455566677777776666554322110000           01122344444444444 78888888877665433222


Q ss_pred             CCCCchhHHHHHHHHHHhc-CCcchHHHHhccCCC----CC-----ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCC-
Q 036356          320 EYRNNVIVNTVLIDMYAKC-GSVDLAPMFFDRTLD----KD-----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE-  388 (462)
Q Consensus       320 ~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-  388 (462)
                      ...--...+..+...|... |+++.|...|++..+    .+     ..++..+...+.+.|++++|.++|++....-.. 
T Consensus       109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~  188 (282)
T PF14938_consen  109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN  188 (282)
T ss_dssp             -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence            2222245666777788887 899988888887652    11     235567888899999999999999998875322 


Q ss_pred             ----CCHh-HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC------HHHHHHHHHHHHc
Q 036356          389 ----PRHQ-HYARVVDLLARAGYSNHAFKFIMNM-PIELR------LSVRRALLSAWKI  435 (462)
Q Consensus       389 ----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~l~~~~~~  435 (462)
                          ++.. .|...+-.+...|++..|.+.+++. ...|+      ......|+.++-.
T Consensus       189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~  247 (282)
T PF14938_consen  189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE  247 (282)
T ss_dssp             CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred             cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence                2222 3334455667789999999999987 33332      3356677888654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.96  E-value=0.46  Score=47.82  Aligned_cols=215  Identities=12%  Similarity=0.113  Sum_probs=135.7

Q ss_pred             cCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHH--HHhCCChhHHHHHHHHhhhhhhhhcCCC
Q 036356           94 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISG--YAKNGYAEEAVKLFPKWMDYYIGKSEYR  171 (462)
Q Consensus        94 ~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~  171 (462)
                      ...++++.|.+-...+.+.                  .||.. |..++.+  +.+.|+.++|..+++..     ...+..
T Consensus        20 ld~~qfkkal~~~~kllkk------------------~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~-----~~~~~~   75 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKK------------------HPNAL-YAKVLKALSLFRLGKGDEALKLLEAL-----YGLKGT   75 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHH------------------CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhh-----ccCCCC
Confidence            3557889999999988876                  45553 4444555  46899999999999885     233322


Q ss_pred             CCchHHHHHHHHHHhcCCcccHHHHhhccCC--CCcchHHHHHHHHHhCc------hHHHHHHHhhhcCCcchHHHHHHh
Q 036356          172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMIVGYGLHE------WSAFGSFDGLLSNEENEYGTALDC  243 (462)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~------~~a~~~~~~m~~~~~~~~~~ll~~  243 (462)
                       |..|...+-.+|.+.++.++|..++++..+  |+......+..+|++.+      ..|+++++... .+.+.|.++++.
T Consensus        76 -D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-k~~yyfWsV~Sl  153 (932)
T KOG2053|consen   76 -DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-KRAYYFWSVISL  153 (932)
T ss_pred             -chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccchHHHHHHH
Confidence             888999999999999999999999999875  55555556667777766      66777777442 344555555555


Q ss_pred             hcCcc-c---------hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356          244 SCDLE-F---------LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD  313 (462)
Q Consensus       244 ~~~~~-~---------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  313 (462)
                      ..+.. .         +.-|.+.++.+.+.+-..               -+..-..--...+-..|++++|++++...  
T Consensus       154 ilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~---------------~s~aE~~Lyl~iL~~~~k~~eal~~l~~~--  216 (932)
T KOG2053|consen  154 ILQSIFSENELLDPILLALAEKMVQKLLEKKGKI---------------ESEAEIILYLLILELQGKYQEALEFLAIT--  216 (932)
T ss_pred             HHHhccCCcccccchhHHHHHHHHHHHhccCCcc---------------chHHHHHHHHHHHHhcccHHHHHHHHHHH--
Confidence            43221 1         223444555555443110               11111112223455678899999998542  


Q ss_pred             HHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC
Q 036356          314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD  353 (462)
Q Consensus       314 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  353 (462)
                        ..+.-...+...-+.-++.+...+++.+..++-.++..
T Consensus       217 --la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  217 --LAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             --HHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence              22223333444555667778888888877666665553

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.94  E-value=0.0035  Score=49.41  Aligned_cols=82  Identities=11%  Similarity=-0.024  Sum_probs=71.8

Q ss_pred             hccCCChhhHHHHHHhh--cCC-CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL--LSN-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +...|++++|..+|+..  ..| +..-|-.|.-++-..|++++|...|......++                 -|+..+-
T Consensus        45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-----------------ddp~~~~  107 (157)
T PRK15363         45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-----------------DAPQAPW  107 (157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------CCchHHH
Confidence            88999999999999999  445 455666777777789999999999999999876                 6788888


Q ss_pred             HHHHHHHhCCChhHHHHHHHHh
Q 036356          139 AMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      .+..++...|+.+.|.+.|+.-
T Consensus       108 ~ag~c~L~lG~~~~A~~aF~~A  129 (157)
T PRK15363        108 AAAECYLACDNVCYAIKALKAV  129 (157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Confidence            8999999999999999999985

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.93  E-value=0.55  Score=47.31  Aligned_cols=210  Identities=11%  Similarity=0.030  Sum_probs=126.2

Q ss_pred             hccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceee---hhh-hccCCChhhHHHHHHhh---cCCCcchHHHHHHh
Q 036356           20 CVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFL---DLY-HLWSRTEWSAFGSFDGL---LSNEENEYGTALDC   92 (462)
Q Consensus        20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~   92 (462)
                      ...++++..|.+-.+.+.+..            |+....   .++ ..+.|+.++|..+++..   ...|..|...+-.+
T Consensus        19 ~ld~~qfkkal~~~~kllkk~------------Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~   86 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKH------------PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNV   86 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHC------------CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHH
Confidence            345677788888888887765            455444   444 99999999999999988   44477899999999


Q ss_pred             hcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCC
Q 036356           93 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN  172 (462)
Q Consensus        93 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  172 (462)
                      |...+..++|..+|++..+..                  |+..-...+..+|++.+++.+-.+.--+|      -...+-
T Consensus        87 y~d~~~~d~~~~~Ye~~~~~~------------------P~eell~~lFmayvR~~~yk~qQkaa~~L------yK~~pk  142 (932)
T KOG2053|consen   87 YRDLGKLDEAVHLYERANQKY------------------PSEELLYHLFMAYVREKSYKKQQKAALQL------YKNFPK  142 (932)
T ss_pred             HHHHhhhhHHHHHHHHHHhhC------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhCCc
Confidence            999999999999999998774                  55555666677778777766544433332      112344


Q ss_pred             CchHHHHHHHHHHhcC-Ccc---------cHHHHhhccCCCCc--ch-HHHHH--HHHHhCc--hHHHHHHHhhhc----
Q 036356          173 NVIVNTVLIDMYAKCG-SVD---------LAPMFFDRTLDKDV--VM-RSAMI--VGYGLHE--WSAFGSFDGLLS----  231 (462)
Q Consensus       173 ~~~~~~~li~~~~~~g-~~~---------~a~~~~~~m~~~~~--~~-~~~li--~~~~~~~--~~a~~~~~~m~~----  231 (462)
                      +...+-++++.+...- ..+         -|.+.++.+.+.+.  .+ -...+  ..+...+  ++|.+++..-..    
T Consensus       143 ~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~  222 (932)
T KOG2053|consen  143 RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT  222 (932)
T ss_pred             ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc
Confidence            4555555666555432 222         23334444433221  11 01111  1222233  666666632222    


Q ss_pred             -CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCC
Q 036356          232 -NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL  265 (462)
Q Consensus       232 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  265 (462)
                       .+...-+.-+..+...+++.+..++-.++...|.
T Consensus       223 ~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~  257 (932)
T KOG2053|consen  223 SANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN  257 (932)
T ss_pred             ccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence             2333333455555666666666666666666554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.90  E-value=0.073  Score=51.21  Aligned_cols=264  Identities=12%  Similarity=0.006  Sum_probs=129.2

Q ss_pred             cCCCcchHHHHHHhhcCccchhhHHHH---------HHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCC
Q 036356           79 LSNEENEYGTALDCSCDLEFLEQGKIV---------HGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGY  149 (462)
Q Consensus        79 ~~~~~~~~~~ll~~~~~~~~~~~a~~~---------~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~  149 (462)
                      +.+.+..+.+-+..+...|.+++|.++         ++.+....                  .+.-.++.-=.+|.+-.+
T Consensus       552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A------------------LeAL~f~~ARkAY~rVRd  613 (1081)
T KOG1538|consen  552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA------------------LEALDFETARKAYIRVRD  613 (1081)
T ss_pred             eecccccccccchhhhhccchhhhhcccccceecchHHHHHHHH------------------HhhhhhHHHHHHHHHHhc
Confidence            455566677777788888888888765         22222221                  233444555556665554


Q ss_pred             hh--HHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHH
Q 036356          150 AE--EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD  227 (462)
Q Consensus       150 ~~--~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~  227 (462)
                      ..  +.+.-+++|     ++.|-.|+...   +...++-.|.+.+|-++|.+--..                ..|+++|.
T Consensus       614 l~~L~li~EL~~~-----k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e----------------nRAlEmyT  669 (1081)
T KOG1538|consen  614 LRYLELISELEER-----KKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE----------------NRALEMYT  669 (1081)
T ss_pred             cHHHHHHHHHHHH-----HhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch----------------hhHHHHHH
Confidence            33  233334454     77787787755   456677788999998888763321                23444443


Q ss_pred             hhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHH
Q 036356          228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKL  307 (462)
Q Consensus       228 ~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  307 (462)
                      .|.-     |. ...-+...|.-++-..+...-.+-.                  .|+.--.+-...+...|+.++|..+
T Consensus       670 DlRM-----FD-~aQE~~~~g~~~eKKmL~RKRA~WA------------------r~~kePkaAAEmLiSaGe~~KAi~i  725 (1081)
T KOG1538|consen  670 DLRM-----FD-YAQEFLGSGDPKEKKMLIRKRADWA------------------RNIKEPKAAAEMLISAGEHVKAIEI  725 (1081)
T ss_pred             HHHH-----HH-HHHHHhhcCChHHHHHHHHHHHHHh------------------hhcCCcHHHHHHhhcccchhhhhhh
Confidence            3310     00 0111112222222111111100000                  0111111223345556777776666


Q ss_pred             hhHHH-HHHHHhhCC---CCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHH
Q 036356          308 FPKWM-DYYIGKSEY---RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR  383 (462)
Q Consensus       308 ~~~~~-~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  383 (462)
                      ..+.= .+.+.+-+-   ..+..+...+..-+.+...+-.|.++|.+|-+     ..+++......+++.+|..+-++..
T Consensus       726 ~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----~ksiVqlHve~~~W~eAFalAe~hP  800 (1081)
T KOG1538|consen  726 CGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-----LKSLVQLHVETQRWDEAFALAEKHP  800 (1081)
T ss_pred             hhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-----HHHHhhheeecccchHhHhhhhhCc
Confidence            52210 000111111   12233444444444555666677777776643     2355666677777777777766665


Q ss_pred             HCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          384 KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       384 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +  +.||..  ....+-++...++++|.+.|.+.
T Consensus       801 e--~~~dVy--~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  801 E--FKDDVY--MPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             c--cccccc--chHHHHhhhhhhHHHHHHHHHHh
Confidence            5  555532  22233344555555555555555

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.87  E-value=0.037  Score=43.76  Aligned_cols=86  Identities=9%  Similarity=-0.072  Sum_probs=59.8

Q ss_pred             HHHHHHHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcC
Q 036356          330 VLIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAG  405 (462)
Q Consensus       330 ~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g  405 (462)
                      .+...+...|++++|.++|+-..  +| +..-|-.|.-++-..|++++|+..+.....  +.|| ...+-.+..++...|
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcC
Confidence            34445566777888887777655  33 444556667777777778888888877777  5565 667777777777778


Q ss_pred             ChHHHHHHHHhC
Q 036356          406 YSNHAFKFIMNM  417 (462)
Q Consensus       406 ~~~~A~~~~~~m  417 (462)
                      +.+.|.+.|+..
T Consensus       118 ~~~~A~~aF~~A  129 (157)
T PRK15363        118 NVCYAIKALKAV  129 (157)
T ss_pred             CHHHHHHHHHHH
Confidence            888777777765

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.81  E-value=0.014  Score=52.24  Aligned_cols=138  Identities=14%  Similarity=0.100  Sum_probs=86.5

Q ss_pred             hHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh-CCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHH
Q 036356          286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS-EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSA  361 (462)
Q Consensus       286 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~  361 (462)
                      .+|..++...-+.+..+.|..+|.+.     .+. ....++....+++. |...++.+.|.++|+...+   .+...|..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a-----~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f~~~~~~~~~   75 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRA-----RKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKFPSDPDFWLE   75 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHH-----HcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            46778888888888888888888883     222 22333333333332 2224556668888887663   46667777


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036356          362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----QHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLS  431 (462)
Q Consensus       362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~  431 (462)
                      .+.-+.+.++.+.|..+|++....  -|..    ..|...++-=.+.|+++.+.++.+++ ..-|+......+..
T Consensus        76 Y~~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~  148 (280)
T PF05843_consen   76 YLDFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD  148 (280)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            788888888888888888887764  3333    47777777777888888888887777 33444444444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.77  E-value=0.0039  Score=41.64  Aligned_cols=54  Identities=15%  Similarity=0.199  Sum_probs=37.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +...+...|++++|.+.|+...+  ..|+ ...+..+..++...|++++|...+++.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34556677777777777777777  3364 566677777777777777777777765

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.75  E-value=0.038  Score=41.96  Aligned_cols=89  Identities=13%  Similarity=0.085  Sum_probs=56.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 036356          362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPR--HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR----LSVRRALLSAWK  434 (462)
Q Consensus       362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~~  434 (462)
                      +..++-..|+.++|+.++++....|....  ...+-.+...+...|++++|..++++. .-.|+    ......+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            34455667777778888877777776655  345666667777778888887777776 22233    223333445666


Q ss_pred             ccCChHHHHHHHHhhh
Q 036356          435 IPMQQWENMLQTIRGI  450 (462)
Q Consensus       435 ~~~~~~~a~~~~~~~~  450 (462)
                      ..|+.++|+..+.+.+
T Consensus        87 ~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   87 NLGRPKEALEWLLEAL  102 (120)
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            7777777777665543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.73  E-value=0.014  Score=48.08  Aligned_cols=85  Identities=16%  Similarity=0.023  Sum_probs=59.0

Q ss_pred             chHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC--eeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356           84 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN--VTLRNAMISGYAKNGYAEEAVKLFPKWM  161 (462)
Q Consensus        84 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~  161 (462)
                      ..+..+...+...|++++|...|++..+...                .+.  ...+..+...+.+.|++++|...+++. 
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-   98 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEE----------------DPNDRSYILYNMGIIYASNGEHDKALEYYHQA-   98 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh----------------ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence            3566677777788888999988888877654                222  356777888888889999999888885 


Q ss_pred             hhhhhhcCCCCCchHHHHHHHHHHhcCCc
Q 036356          162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSV  190 (462)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~  190 (462)
                          ... .+-+...+..+...|...|+.
T Consensus        99 ----l~~-~p~~~~~~~~lg~~~~~~g~~  122 (172)
T PRK02603         99 ----LEL-NPKQPSALNNIAVIYHKRGEK  122 (172)
T ss_pred             ----HHh-CcccHHHHHHHHHHHHHcCCh
Confidence                222 122355566666777776664

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.70  E-value=0.026  Score=46.46  Aligned_cols=83  Identities=17%  Similarity=0.155  Sum_probs=49.8

Q ss_pred             CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC--chhHHHHHHHHHHhcCCcchHHHHhccCCC--C-Cccc
Q 036356          284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN--NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVM  358 (462)
Q Consensus       284 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~  358 (462)
                      ....+..+...+...|++++|...|++.+     .....+  ....+..+...+.+.|++++|...+++..+  | +...
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  108 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEAL-----KLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA  108 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence            34456667777778888888888888743     222111  134566666667777777777777766542  2 3334


Q ss_pred             hHHHHHHHHhcCC
Q 036356          359 RSAMTVGYGLHGL  371 (462)
Q Consensus       359 ~~~li~~~~~~~~  371 (462)
                      +..+...+...|+
T Consensus       109 ~~~lg~~~~~~g~  121 (172)
T PRK02603        109 LNNIAVIYHKRGE  121 (172)
T ss_pred             HHHHHHHHHHcCC
Confidence            4455555555554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.69  E-value=0.036  Score=54.02  Aligned_cols=137  Identities=7%  Similarity=-0.026  Sum_probs=93.6

Q ss_pred             CCCHhHHHHHHHHHHcCC-----ChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcC--------CcchHHHH
Q 036356          282 QPNVTLWNAMISGYAKNG-----YAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCG--------SVDLAPMF  347 (462)
Q Consensus       282 ~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--------~~~~A~~~  347 (462)
                      +.|...|...+.+.....     ..+.|..+|++.+       ...|+ ...|..+..+|....        ++..+.+.
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai-------~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~  406 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL-------KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTE  406 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            467788888888755432     3678899998843       34555 344444433333221        12233333


Q ss_pred             hccCC-----CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036356          348 FDRTL-----DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL  421 (462)
Q Consensus       348 ~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p  421 (462)
                      .+...     ..+...|..+.-.....|++++|...+++..+  +.|+...|..+...+...|+.++|.+.+++. .+.|
T Consensus       407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            33321     22445677776677778999999999999999  6688889999999999999999999999887 5556


Q ss_pred             CHHHHH
Q 036356          422 RLSVRR  427 (462)
Q Consensus       422 ~~~~~~  427 (462)
                      ...+|.
T Consensus       485 ~~pt~~  490 (517)
T PRK10153        485 GENTLY  490 (517)
T ss_pred             CCchHH
Confidence            555543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.68  E-value=0.14  Score=41.45  Aligned_cols=129  Identities=13%  Similarity=0.079  Sum_probs=100.3

Q ss_pred             CCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C---Cc
Q 036356          282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K---DV  356 (462)
Q Consensus       282 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~  356 (462)
                      -|++..--.+..++.+.|+..+|...|.+.+     ..-+.-|....-.+.++....++...|...++++.+  |   ..
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal-----sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p  160 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQAL-----SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP  160 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-----ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence            4778888888999999999999999999842     223445677777788888889999999999988764  2   33


Q ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .+--.+.+.|...|+++.|+.-|+...+  .-|+...-......+.++|+.++|..-+..+
T Consensus       161 d~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         161 DGHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             CchHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            3445677889999999999999999998  7788666666667778899888876644443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.62  E-value=0.015  Score=47.64  Aligned_cols=85  Identities=11%  Similarity=-0.023  Sum_probs=41.1

Q ss_pred             HHHHHHHHHhcCCcchHHHHhccCC--CCC----ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHH
Q 036356          328 NTVLIDMYAKCGSVDLAPMFFDRTL--DKD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDL  400 (462)
Q Consensus       328 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~  400 (462)
                      |..+...+...|++++|...|++..  .++    ..+|..+...+...|++++|.+.++....  +.|+ ..++..+...
T Consensus        38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la~i  115 (168)
T CHL00033         38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence            3334444444455555554444432  111    12455555566666666666666666555  3343 3344444444


Q ss_pred             HH-------hcCChHHHHHHH
Q 036356          401 LA-------RAGYSNHAFKFI  414 (462)
Q Consensus       401 ~~-------~~g~~~~A~~~~  414 (462)
                      +.       +.|++++|...+
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~~  136 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAWF  136 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHHH
Confidence            44       556655444433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.55  E-value=0.018  Score=50.08  Aligned_cols=99  Identities=13%  Similarity=0.087  Sum_probs=86.2

Q ss_pred             HHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHH
Q 036356          334 MYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNH  409 (462)
Q Consensus       334 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~  409 (462)
                      -+.+.+++++|...|.+..+   .|.+-|..=..+|++.|.++.|++-.+..+.  +.|. ..+|..|-.+|...|++++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence            35678899999999998773   4777788889999999999999999999988  8888 7899999999999999999


Q ss_pred             HHHHHHhC-CCCCCHHHHHHHHHHHH
Q 036356          410 AFKFIMNM-PIELRLSVRRALLSAWK  434 (462)
Q Consensus       410 A~~~~~~m-~~~p~~~~~~~l~~~~~  434 (462)
                      |++.|++. .+.|+..+|..=++...
T Consensus       168 A~~aykKaLeldP~Ne~~K~nL~~Ae  193 (304)
T KOG0553|consen  168 AIEAYKKALELDPDNESYKSNLKIAE  193 (304)
T ss_pred             HHHHHHhhhccCCCcHHHHHHHHHHH
Confidence            99999998 89999888876665543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.54  E-value=0.024  Score=43.51  Aligned_cols=96  Identities=18%  Similarity=0.155  Sum_probs=59.9

Q ss_pred             hhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 036356          325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA  404 (462)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  404 (462)
                      ..++..+|.++++.|+++....+.+..=..|+.       +-...+.         --......|+..+..+++.+|+..
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n   65 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN   65 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence            445666666666666666666665543211100       0000000         112235778888899999999999


Q ss_pred             CChHHHHHHHHhC----CCCCCHHHHHHHHHHHHcc
Q 036356          405 GYSNHAFKFIMNM----PIELRLSVRRALLSAWKIP  436 (462)
Q Consensus       405 g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~~~~  436 (462)
                      |++..|+++++..    +++-+..+|..|++=+...
T Consensus        66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            9999999988877    6666788888887654444

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.54  E-value=0.0068  Score=48.38  Aligned_cols=77  Identities=8%  Similarity=0.044  Sum_probs=59.4

Q ss_pred             hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhh
Q 036356           85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYY  164 (462)
Q Consensus        85 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  164 (462)
                      +...++..+...|+++.|..+.+.+....+                 -|...|..+|.+|...|+...|.+.|+.+....
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-----------------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l  126 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDP-----------------YDEEAYRLLMRALAAQGRRAEALRVYERYRRRL  126 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-----------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-----------------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            456677777889999999999999999876                 788999999999999999999999999986555


Q ss_pred             hhhcCCCCCchHHH
Q 036356          165 IGKSEYRNNVIVNT  178 (462)
Q Consensus       165 ~~~~~~~~~~~~~~  178 (462)
                      ..+.|+.|+..+-.
T Consensus       127 ~~elg~~Ps~~~~~  140 (146)
T PF03704_consen  127 REELGIEPSPETRA  140 (146)
T ss_dssp             HHHHS----HHHHH
T ss_pred             HHHhCcCcCHHHHH
Confidence            56789999876643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.50  E-value=0.032  Score=51.91  Aligned_cols=87  Identities=9%  Similarity=-0.067  Sum_probs=74.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCCh
Q 036356          363 TVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQ  439 (462)
Q Consensus       363 i~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~  439 (462)
                      ...+...|++++|++.|++..+  ..|+ ...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence            4556678999999999999998  6676 678888889999999999999999998 5556 566888999999999999


Q ss_pred             HHHHHHHHhhhh
Q 036356          440 WENMLQTIRGID  451 (462)
Q Consensus       440 ~~a~~~~~~~~~  451 (462)
                      ++|+..+.+.+.
T Consensus        87 ~eA~~~~~~al~   98 (356)
T PLN03088         87 QTAKAALEKGAS   98 (356)
T ss_pred             HHHHHHHHHHHH
Confidence            999988877654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.48  E-value=0.025  Score=46.33  Aligned_cols=93  Identities=14%  Similarity=-0.004  Sum_probs=67.0

Q ss_pred             HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC--chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccch
Q 036356          285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN--NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMR  359 (462)
Q Consensus       285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~  359 (462)
                      ...|..+...+...|++++|+..|.+.+.     ....+  ...++..+...|...|+.++|...++....   ....++
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~-----l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~  109 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMR-----LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL  109 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence            55677777888889999999999998542     21122  245788888999999999999999998763   233455


Q ss_pred             HHHHHHHH-------hcCChHHHHHHHHHH
Q 036356          360 SAMTVGYG-------LHGLGEEGWVLFHHI  382 (462)
Q Consensus       360 ~~li~~~~-------~~~~~~~a~~~~~~m  382 (462)
                      ..+...+.       ..|+++.|...+++.
T Consensus       110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            66666666       777877665555543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.46  E-value=0.68  Score=42.19  Aligned_cols=82  Identities=13%  Similarity=-0.049  Sum_probs=50.6

Q ss_pred             hccCCChhhHHHHHHhh-cCCCcch--HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL-LSNEENE--YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m-~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      -.-.|+++.|.+-|+.| ..|....  ..-|.-..-+.|+.+.|.+.-+..-....                 .-...+.
T Consensus       130 al~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-----------------~l~WA~~  192 (531)
T COG3898         130 ALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-----------------QLPWAAR  192 (531)
T ss_pred             HHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-----------------CCchHHH
Confidence            34456666666666666 3333221  11122222355666666666555544432                 3456788


Q ss_pred             HHHHHHHhCCChhHHHHHHHHh
Q 036356          139 AMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      +.+...+..|+|+.|+++.+.-
T Consensus       193 AtLe~r~~~gdWd~AlkLvd~~  214 (531)
T COG3898         193 ATLEARCAAGDWDGALKLVDAQ  214 (531)
T ss_pred             HHHHHHHhcCChHHHHHHHHHH
Confidence            9999999999999999999885

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.42  E-value=0.033  Score=47.28  Aligned_cols=64  Identities=17%  Similarity=0.291  Sum_probs=30.2

Q ss_pred             CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC
Q 036356          132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL  201 (462)
Q Consensus       132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  201 (462)
                      -|.+++--=+...-..|+--+|++-+.+.      -..+..|...|.-+...|...|++++|.-.++++.
T Consensus       118 t~~v~~KRKlAilka~GK~l~aIk~ln~Y------L~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  118 TDTVIRKRKLAILKAQGKNLEAIKELNEY------LDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             chhHHHHHHHHHHHHcCCcHHHHHHHHHH------HHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            34444443333344444444444444442      22344455555555555555555555555555543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.41  E-value=0.0049  Score=41.74  Aligned_cols=58  Identities=16%  Similarity=0.098  Sum_probs=34.1

Q ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcC-ChHHHHHHHHh
Q 036356          357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAG-YSNHAFKFIMN  416 (462)
Q Consensus       357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g-~~~~A~~~~~~  416 (462)
                      .+|..+...+...|++++|+..|++..+  +.|+ ...|..+..++...| ++++|++.+++
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~   63 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK   63 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            3455555666666666666666666666  4454 445555556666666 46666665554

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.34  E-value=0.38  Score=47.05  Aligned_cols=69  Identities=13%  Similarity=0.027  Sum_probs=36.2

Q ss_pred             CCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCc--------hHHHHHHHHHHhcCCcccHHHHhhccCC
Q 036356          131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV--------IVNTVLIDMYAKCGSVDLAPMFFDRTLD  202 (462)
Q Consensus       131 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~a~~~~~~m~~  202 (462)
                      .|-+..|..+...-...-.++.|...|-+..    .-.|++.-.        ..-.+=+.  +--|++++|++++-++..
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~----dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~dr  762 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCG----DYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADR  762 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc----cccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccch
Confidence            4666677777776666666666666664431    111221100        00011111  223777888888877776


Q ss_pred             CCc
Q 036356          203 KDV  205 (462)
Q Consensus       203 ~~~  205 (462)
                      +|.
T Consensus       763 rDL  765 (1189)
T KOG2041|consen  763 RDL  765 (1189)
T ss_pred             hhh
Confidence            654

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.31  E-value=0.03  Score=43.00  Aligned_cols=102  Identities=14%  Similarity=-0.008  Sum_probs=74.0

Q ss_pred             CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcC-CCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356           82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR-YQPNVTLRNAMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      |+.++..+|.++++.|+++....+++..-.-++  +....-..+.... ..|+..+..+++.+|+.+|++..|+++.+..
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~--~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~f   78 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDV--NGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFF   78 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC--CCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            567889999999999999999988876542221  1100000011111 4688999999999999999999999999998


Q ss_pred             hhhhhhhcCCCCCchHHHHHHHHHHhcCC
Q 036356          161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGS  189 (462)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~  189 (462)
                          ....+++.+..+|..|++-....-+
T Consensus        79 ----s~~Y~I~i~~~~W~~Ll~W~~v~s~  103 (126)
T PF12921_consen   79 ----SRKYPIPIPKEFWRRLLEWAYVLSS  103 (126)
T ss_pred             ----HHHcCCCCCHHHHHHHHHHHHHhcC
Confidence                4777888888999999986655443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.30  E-value=1.3  Score=43.84  Aligned_cols=112  Identities=12%  Similarity=-0.088  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036356          326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG  405 (462)
Q Consensus       326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  405 (462)
                      -+.+--+.-+...|+..+|.++-.+.+-||...|-.=+.+++..+++++-+++-+.+..      +.-|.-.+.+|.++|
T Consensus       685 lSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~  758 (829)
T KOG2280|consen  685 LSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQG  758 (829)
T ss_pred             CcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcc
Confidence            34444455677789999999999999999999999899999999999987777666553      355677889999999


Q ss_pred             ChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356          406 YSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRG  449 (462)
Q Consensus       406 ~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  449 (462)
                      +.++|.+.+-+.+-.+      -...+|.+.|++.+|.....+.
T Consensus       759 n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~~  796 (829)
T KOG2280|consen  759 NKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAEH  796 (829)
T ss_pred             cHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHHh
Confidence            9999999998873222      6778889999999998765543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.25  E-value=0.009  Score=40.27  Aligned_cols=48  Identities=17%  Similarity=0.126  Sum_probs=25.2

Q ss_pred             ccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356           96 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus        96 ~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      .|++++|.++|+++.+..+                 -+...+..+..+|.+.|++++|.++++.+
T Consensus         4 ~~~~~~A~~~~~~~l~~~p-----------------~~~~~~~~la~~~~~~g~~~~A~~~l~~~   51 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNP-----------------DNPEARLLLAQCYLKQGQYDEAEELLERL   51 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTT-----------------TSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred             ccCHHHHHHHHHHHHHHCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4555555555555555533                 34444445555555555555555555553

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.22  E-value=0.023  Score=51.55  Aligned_cols=265  Identities=13%  Similarity=0.052  Sum_probs=158.5

Q ss_pred             HhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee----eHHHHHHHHHhCCChhHHHHHHHHhhhhhhh
Q 036356           91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT----LRNAMISGYAKNGYAEEAVKLFPKWMDYYIG  166 (462)
Q Consensus        91 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  166 (462)
                      .-+++.|+.+....+|+..++-|-                 -|..    +|..|-++|.-.+++++|+++...=. -..+
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGT-----------------eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDl-tlar   86 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGT-----------------EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDL-TLAR   86 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcc-----------------hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhH-HHHH
Confidence            356899999999999999999885                 3443    46667777888889999988754310 0001


Q ss_pred             hcCCCC-CchHHHHHHHHHHhcCCcccHHHHhhccCC-------C--CcchHHHHHHHHHhCc-----------------
Q 036356          167 KSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------K--DVVMRSAMIVGYGLHE-----------------  219 (462)
Q Consensus       167 ~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~--~~~~~~~li~~~~~~~-----------------  219 (462)
                      ..|-+. ...+...|-+.+--.|.+++|.-...+-..       +  ....+..+-..|...|                 
T Consensus        87 ~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~e  166 (639)
T KOG1130|consen   87 LLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAE  166 (639)
T ss_pred             HhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHH
Confidence            111111 122223344444555666666554332210       0  1111222222222111                 


Q ss_pred             -----hHHHHHHHhhhc---------CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCC-CC
Q 036356          220 -----WSAFGSFDGLLS---------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ-PN  284 (462)
Q Consensus       220 -----~~a~~~~~~m~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~  284 (462)
                           +.|.++|.+-.+         .-...|..|-+.|.-.|+++.|....+.-+...-+            +|.+ ..
T Consensus       167 v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e------------fGDrAae  234 (639)
T KOG1130|consen  167 VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE------------FGDRAAE  234 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH------------hhhHHHH
Confidence                 345555554444         33456777777788889999998877653321100            1111 23


Q ss_pred             HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---------CC
Q 036356          285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---------KD  355 (462)
Q Consensus       285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~  355 (462)
                      -..+..+-.++.-.|+++.|.+.|+..+.-...-..-......+-+|.+.|.-..++++|+..+.+-..         -.
T Consensus       235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe  314 (639)
T KOG1130|consen  235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE  314 (639)
T ss_pred             HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            356777888888899999999999875532222222333456666788888888888888888765331         23


Q ss_pred             ccchHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036356          356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH  385 (462)
Q Consensus       356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  385 (462)
                      ..++-+|..+|...|..++|+.+.+.-.+.
T Consensus       315 ~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  315 LRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            456778888898888889988877665543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.13  E-value=0.038  Score=50.16  Aligned_cols=125  Identities=13%  Similarity=-0.021  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHhcCCcchHHHHhccCC---------CCCccchHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCHh
Q 036356          327 VNTVLIDMYAKCGSVDLAPMFFDRTL---------DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----G-IEPRHQ  392 (462)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~p~~~  392 (462)
                      .|..|-+.|.-.|+++.|+...+.=.         ......++.|..++.-.|+++.|.+.++.-...    | -.....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            45555555556678888876554221         124456778888899999999999888775443    2 222355


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356          393 HYARVVDLLARAGYSNHAFKFIMNM--------PIELRLSVRRALLSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       393 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                      +..+|.+.|.-..++++|+.++.+-        ...-....+.+|..++...|..+.|+.....-++
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            6677888888888999998877653        2223456788899999999999999866554443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.11  E-value=0.037  Score=44.11  Aligned_cols=77  Identities=8%  Similarity=0.079  Sum_probs=58.2

Q ss_pred             hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHH
Q 036356          236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY  315 (462)
Q Consensus       236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  315 (462)
                      ....++..+...|+++.|.++...+....                 +-|...|..+|.+|...|+..+|.+.|.+.....
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-----------------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l  126 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-----------------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL  126 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-----------------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-----------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            34556677788999999999999999875                 3588899999999999999999999999877665


Q ss_pred             HHhhCCCCchhHHH
Q 036356          316 IGKSEYRNNVIVNT  329 (462)
Q Consensus       316 ~~~~~~~p~~~~~~  329 (462)
                      ..+.|+.|+..+-.
T Consensus       127 ~~elg~~Ps~~~~~  140 (146)
T PF03704_consen  127 REELGIEPSPETRA  140 (146)
T ss_dssp             HHHHS----HHHHH
T ss_pred             HHHhCcCcCHHHHH
Confidence            66789999877643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.10  E-value=0.027  Score=38.52  Aligned_cols=59  Identities=12%  Similarity=0.073  Sum_probs=41.1

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036356          364 VGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS  424 (462)
Q Consensus       364 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~  424 (462)
                      ..|.+.+++++|.++++.+..  +.|+ ...|......+.+.|++++|.+.++.. ...|+..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            456677778888888888777  5565 556666777777778888887777776 4445433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.01  E-value=0.052  Score=41.23  Aligned_cols=107  Identities=15%  Similarity=-0.009  Sum_probs=72.3

Q ss_pred             HHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC--eeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhh
Q 036356           89 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN--VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG  166 (462)
Q Consensus        89 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  166 (462)
                      +-.++-..|+.++|..+|++....|+                ...  ...+-.+.+.+...|++++|+.+|++.     .
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL----------------~~~~~~~a~i~lastlr~LG~~deA~~~L~~~-----~   65 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGL----------------SGADRRRALIQLASTLRNLGRYDEALALLEEA-----L   65 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCC----------------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----H
Confidence            44566678999999999999999887                322  235556778889999999999999986     2


Q ss_pred             hcCCC--CCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHH
Q 036356          167 KSEYR--NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG  216 (462)
Q Consensus       167 ~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~  216 (462)
                      .....  .+......+.-++...|+.++|.+++-....++...|.--|..|.
T Consensus        66 ~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   66 EEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALAETLPRYRRAIRFYA  117 (120)
T ss_pred             HHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22111  122222234446778899999988886655555555655555554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.96  E-value=0.16  Score=49.57  Aligned_cols=133  Identities=9%  Similarity=0.005  Sum_probs=93.8

Q ss_pred             hCCCCchhHHHHHHHHHHhcCC-----cchHHHHhccCCC--CCc-cchHHHHHHHHhcC--------ChHHHHHHHHHH
Q 036356          319 SEYRNNVIVNTVLIDMYAKCGS-----VDLAPMFFDRTLD--KDV-VMRSAMTVGYGLHG--------LGEEGWVLFHHI  382 (462)
Q Consensus       319 ~~~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~--------~~~~a~~~~~~m  382 (462)
                      .....+...|...+++.....+     .+.|..+|++..+  |+- ..|..+..++....        +...+.+...+.
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            4556778999999988655332     6689999998874  543 34554444443321        123344444443


Q ss_pred             HHC-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356          383 RKH-GIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       383 ~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                      ... ....+...|..+.-.....|++++|...+++. .+.|+...|..+.+.+...|+.++|+..+.+.++
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            332 23334577888877777789999999999998 7778999999999999999999999988877654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.94  E-value=0.29  Score=42.74  Aligned_cols=57  Identities=7%  Similarity=-0.016  Sum_probs=44.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          361 AMTVGYGLHGLGEEGWVLFHHIRKH--GIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       361 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .+.+-|.+.|.+..|..-++.+.+.  +.+........++.+|...|..++|.++...+
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            4566688888998899888888886  44444677788889999999999988876543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.91  E-value=0.53  Score=38.24  Aligned_cols=124  Identities=12%  Similarity=-0.043  Sum_probs=94.7

Q ss_pred             hhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC----CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---
Q 036356          318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD----KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR---  390 (462)
Q Consensus       318 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---  390 (462)
                      +-...|+...--.|..++.+.|+..+|...|++...    .|....-.+..+....+++..|...++++.+.  .|+   
T Consensus        82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~  159 (251)
T COG4700          82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRS  159 (251)
T ss_pred             HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCC
Confidence            344678888778899999999999999999998763    46666777788888899999999999999884  343   


Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHH
Q 036356          391 HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKIPMQQWENM  443 (462)
Q Consensus       391 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~  443 (462)
                      ..+.-.+...|...|++.+|...|+.. ..-|+...--....-+.++|+..++.
T Consensus       160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~  213 (251)
T COG4700         160 PDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREAN  213 (251)
T ss_pred             CCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHH
Confidence            345566778899999999999999987 55566554444444455666555554

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.90  E-value=1.5  Score=40.91  Aligned_cols=362  Identities=12%  Similarity=0.032  Sum_probs=189.5

Q ss_pred             hccCCChhhHHHHHHhh---cCCC------cchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCC
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNE------ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP  132 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p  132 (462)
                      +.+++++.+|.++|.++   ...+      ...-+.+|+++- ..+.+.....+....+..                  |
T Consensus        16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~------------------~   76 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF------------------G   76 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc------------------C
Confidence            66788999999999999   2222      223445666664 345666666666666542                  3


Q ss_pred             CeeeHHHHHHH--HHhCCChhHHHHHHHHhhhhhhhhc--CCCC------------CchHHHHHHHHHHhcCCcccHHHH
Q 036356          133 NVTLRNAMISG--YAKNGYAEEAVKLFPKWMDYYIGKS--EYRN------------NVIVNTVLIDMYAKCGSVDLAPMF  196 (462)
Q Consensus       133 ~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~------------~~~~~~~li~~~~~~g~~~~a~~~  196 (462)
                       ...|-.|..+  +-+.+++..|++.+....     ..  +..|            |...=+..+.++...|.+.++..+
T Consensus        77 -~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~-----~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~i  150 (549)
T PF07079_consen   77 -KSAYLPLFKALVAYKQKEYRKALQALSVWK-----EQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAI  150 (549)
T ss_pred             -CchHHHHHHHHHHHHhhhHHHHHHHHHHHH-----hhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHH
Confidence             4455555555  346788888888776652     22  2221            222235566778888999999998


Q ss_pred             hhccCC--------CCcchHHHHHHHHHhCc-----------------hHHHHHHHhhhc----------CCcchHHHHH
Q 036356          197 FDRTLD--------KDVVMRSAMIVGYGLHE-----------------WSAFGSFDGLLS----------NEENEYGTAL  241 (462)
Q Consensus       197 ~~~m~~--------~~~~~~~~li~~~~~~~-----------------~~a~~~~~~m~~----------~~~~~~~~ll  241 (462)
                      +++|.+        -+..+|+.++-.++++-                 +.++-..++|..          |-...+..++
T Consensus       151 Ln~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~im  230 (549)
T PF07079_consen  151 LNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIM  230 (549)
T ss_pred             HHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHH
Confidence            888763        36667777554444331                 222223333332          4444444444


Q ss_pred             HhhcC--ccchhhhHHHHHHHHHhCCCcchHHH-HHHHHh-----------hc----------CCCCHhHHHHHHHHHHc
Q 036356          242 DCSCD--LEFLEQGKIVHGFMIKLGLELESDLL-ISLTAV-----------CR----------YQPNVTLWNAMISGYAK  297 (462)
Q Consensus       242 ~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~-----------~~----------~~~~~~~~~~li~~~~~  297 (462)
                      ....-  .....--.++++.....-+.|+-... ..++..           |.          .+.=+.++..++....+
T Consensus       231 qhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk  310 (549)
T PF07079_consen  231 QHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK  310 (549)
T ss_pred             HHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            43321  12223333444444444444433321 111111           00          11123456667777777


Q ss_pred             CCChhHHHHHhhHHH-------------------HHH------------------HHhhCCCCch-hHHHHHHH---HHH
Q 036356          298 NGYAEEAVKLFPKWM-------------------DYY------------------IGKSEYRNNV-IVNTVLID---MYA  336 (462)
Q Consensus       298 ~~~~~~a~~~~~~~~-------------------~~~------------------~~~~~~~p~~-~~~~~li~---~~~  336 (462)
                      .++..+|.+.+.-..                   .+.                  +.......|. ....-|+.   -+-
T Consensus       311 ~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW  390 (549)
T PF07079_consen  311 QVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLW  390 (549)
T ss_pred             HHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence            777777777662210                   000                  0000000110 00011111   122


Q ss_pred             hcCC-cchHHHHhccCCC---CCccchHHHHH----HHHh---cCChHHHHHHHHHHHHCCCCCC----HhHHHHHHHH-
Q 036356          337 KCGS-VDLAPMFFDRTLD---KDVVMRSAMTV----GYGL---HGLGEEGWVLFHHIRKHGIEPR----HQHYARVVDL-  400 (462)
Q Consensus       337 ~~g~-~~~A~~~~~~~~~---~~~~~~~~li~----~~~~---~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~-  400 (462)
                      +.|. -++|.++++.+.+   -|..+-|.+..    .|..   ...+.+-..+-+-..+.|++|-    ...-|.|.+| 
T Consensus       391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE  470 (549)
T PF07079_consen  391 EIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE  470 (549)
T ss_pred             hcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence            2333 5556666665543   23333332211    2221   1223334444444555577774    3344555554 


Q ss_pred             -HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356          401 -LARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKIPMQQWENMLQTIR  448 (462)
Q Consensus       401 -~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  448 (462)
                       +...|++.++.-.-..+ .+.|++.+|..+.-.+....++.+|-..+..
T Consensus       471 yLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  471 YLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence             45678888887766666 7788888888888888888888888866654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.88  E-value=0.28  Score=47.44  Aligned_cols=19  Identities=5%  Similarity=-0.134  Sum_probs=12.0

Q ss_pred             HHhhcCccchhhHHHHHHH
Q 036356           90 LDCSCDLEFLEQGKIVHGF  108 (462)
Q Consensus        90 l~~~~~~~~~~~a~~~~~~  108 (462)
                      ...|+-.|.+.+|-++|.+
T Consensus       639 A~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  639 ADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             HHHHHhhhhHHHHHHHHHH
Confidence            3455666777777777653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.85  E-value=0.79  Score=44.95  Aligned_cols=140  Identities=11%  Similarity=-0.024  Sum_probs=71.7

Q ss_pred             cchhhHHHHHHHHHHhcCCcchhH---------HHHHhhhcC----CCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhh
Q 036356           97 EFLEQGKIVHGFMIKLGLELESDL---------LISLTAVCR----YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY  163 (462)
Q Consensus        97 ~~~~~a~~~~~~m~~~g~~~~~~~---------l~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  163 (462)
                      |++++|+++|-+|-++++  .-+.         +++.+...|    ...-...|+.+...++....|++|.+.|..-   
T Consensus       748 g~feeaek~yld~drrDL--Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~---  822 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDADRRDL--AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC---  822 (1189)
T ss_pred             cchhHhhhhhhccchhhh--hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            677778887777776655  1111         222222211    1111234555555555555555555555441   


Q ss_pred             hhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHH
Q 036356          164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTAL  241 (462)
Q Consensus       164 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll  241 (462)
                           |   +   -...+.++.+..++++.+.+...+. .|......+...+.+.|  ++|.+.|-+-..|-     ..+
T Consensus       823 -----~---~---~e~~~ecly~le~f~~LE~la~~Lp-e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv  885 (1189)
T KOG2041|consen  823 -----G---D---TENQIECLYRLELFGELEVLARTLP-EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAV  885 (1189)
T ss_pred             -----c---c---hHhHHHHHHHHHhhhhHHHHHHhcC-cccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHH
Confidence                 0   0   0124445555555555544444443 23444556667777777  77766665543332     345


Q ss_pred             HhhcCccchhhhHHHHH
Q 036356          242 DCSCDLEFLEQGKIVHG  258 (462)
Q Consensus       242 ~~~~~~~~~~~a~~~~~  258 (462)
                      ..|...++|.+|.++-+
T Consensus       886 ~tCv~LnQW~~avelaq  902 (1189)
T KOG2041|consen  886 HTCVELNQWGEAVELAQ  902 (1189)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            56666777777666543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.78  E-value=0.12  Score=44.17  Aligned_cols=143  Identities=12%  Similarity=0.003  Sum_probs=94.5

Q ss_pred             hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhh
Q 036356           85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYY  164 (462)
Q Consensus        85 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  164 (462)
                      +-+.+++++...|++.-....+.+..+...                +.++.....|.+.-.+.||.+.|...|++.....
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~----------------e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~  242 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYP----------------EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT  242 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCC----------------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            345667777778888888888888888776                6778888889999999999999999999862111


Q ss_pred             hhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCC---CcchHHH--HHHHHHhCchHHHHHHHhhhc--CCcchH
Q 036356          165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK---DVVMRSA--MIVGYGLHEWSAFGSFDGLLS--NEENEY  237 (462)
Q Consensus       165 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~--li~~~~~~~~~a~~~~~~m~~--~~~~~~  237 (462)
                      .+-.+++.+..+.......|.-++++..|...++++...   |+..-|.  ++..|...-.+|++..+.|..  |...+-
T Consensus       243 ~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~  322 (366)
T KOG2796|consen  243 QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH  322 (366)
T ss_pred             hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence            122233333333333444566678888888889887753   3333332  333332222788888888877  666665


Q ss_pred             HHHHHh
Q 036356          238 GTALDC  243 (462)
Q Consensus       238 ~~ll~~  243 (462)
                      ++++-.
T Consensus       323 es~~~n  328 (366)
T KOG2796|consen  323 ESVLFN  328 (366)
T ss_pred             hhHHHH
Confidence            555443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.73  E-value=0.021  Score=39.69  Aligned_cols=65  Identities=17%  Similarity=0.249  Sum_probs=45.2

Q ss_pred             HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC-CCc-hhHHHHHHHHHHhcCCcchHHHHhcc
Q 036356          285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RNN-VIVNTVLIDMYAKCGSVDLAPMFFDR  350 (462)
Q Consensus       285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~  350 (462)
                      ..+|+.+...|...|++++|+..|++.+.- ....|. .|+ ..+++.+...|...|++++|.+.+++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            356788888999999999999999887653 222332 122 55677777777778887777777654

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.70  E-value=0.016  Score=39.10  Aligned_cols=62  Identities=19%  Similarity=0.054  Sum_probs=53.7

Q ss_pred             CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCC-ChhHHHHHHHHh
Q 036356           82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNG-YAEEAVKLFPKW  160 (462)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m  160 (462)
                      +..+|..+...+.+.|++++|...|++..+...                 -+...|..+..++.+.| ++++|++.|++-
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-----------------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a   64 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-----------------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKA   64 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-----------------THHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------CCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            456788888899999999999999999999875                 57778888999999999 799999999874

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.64  E-value=0.018  Score=40.10  Aligned_cols=57  Identities=12%  Similarity=0.149  Sum_probs=25.1

Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHHHHC--CCC---CC-HhHHHHHHHHHHhcCChHHHHHHHH
Q 036356          359 RSAMTVGYGLHGLGEEGWVLFHHIRKH--GIE---PR-HQHYARVVDLLARAGYSNHAFKFIM  415 (462)
Q Consensus       359 ~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~  415 (462)
                      |+.+...|...|++++|+..|++..+.  ...   |+ ..++..+...|...|++++|++.++
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~   70 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ   70 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            444445555555555555555544432  011   11 2334444444455555555554444

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.63  E-value=0.72  Score=39.67  Aligned_cols=140  Identities=14%  Similarity=0.090  Sum_probs=93.3

Q ss_pred             cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356          234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD  313 (462)
Q Consensus       234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  313 (462)
                      ..+.+.++.++.-.+.+.-....+.+.++..-+                .+......+.+.-.+.|+.+.|...|++   
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e----------------~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~---  237 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE----------------QEPQLLSGLGRISMQIGDIKTAEKYFQD---  237 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc----------------ccHHHHHHHHHHHHhcccHHHHHHHHHH---
Confidence            345567777777788888888888888876532                4667777888888889999999999987   


Q ss_pred             HHHHhhCCCCchhHHHHHHH-----HHHhcCCcchHHHHhccCCCC---CccchHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036356          314 YYIGKSEYRNNVIVNTVLID-----MYAKCGSVDLAPMFFDRTLDK---DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH  385 (462)
Q Consensus       314 ~~~~~~~~~p~~~~~~~li~-----~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  385 (462)
                        ..+..-..|..+.+.++.     .|.-.+++..|...|+++...   |...-|.=.-+..-.|+...|++.++.|.. 
T Consensus       238 --vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~-  314 (366)
T KOG2796|consen  238 --VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ-  314 (366)
T ss_pred             --HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc-
Confidence              444444445445544443     344566777888888777642   333334333333346788888888888887 


Q ss_pred             CCCCCHhHHHH
Q 036356          386 GIEPRHQHYAR  396 (462)
Q Consensus       386 g~~p~~~~~~~  396 (462)
                       ..|...+-++
T Consensus       315 -~~P~~~l~es  324 (366)
T KOG2796|consen  315 -QDPRHYLHES  324 (366)
T ss_pred             -cCCccchhhh
Confidence             5565554443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.62  E-value=0.84  Score=35.92  Aligned_cols=130  Identities=16%  Similarity=0.132  Sum_probs=93.0

Q ss_pred             hHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHH
Q 036356          286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG  365 (462)
Q Consensus       286 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~  365 (462)
                      .....++..+.+.+.+.....+++.     +...+ ..+....+.++..|++.+. ++....++.  ..+.......++.
T Consensus         8 ~~~~~vv~~~~~~~~~~~l~~yLe~-----~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~   78 (140)
T smart00299        8 IDVSEVVELFEKRNLLEELIPYLES-----ALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKL   78 (140)
T ss_pred             CCHHHHHHHHHhCCcHHHHHHHHHH-----HHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHH
Confidence            3445678888888899999999988     44445 3677889999999998643 444444442  3455556678888


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 036356          366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA-GYSNHAFKFIMNMPIELRLSVRRALLSAWKIP  436 (462)
Q Consensus       366 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~  436 (462)
                      |.+.+.++++..++.++..         |...+..+... ++++.|.+++++-   .+...|..++..+...
T Consensus        79 c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l~~  138 (140)
T smart00299       79 CEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALLDK  138 (140)
T ss_pred             HHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHHcc
Confidence            9889999999888887643         23344444444 8899999998884   3677898888877643

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.60  E-value=1.4  Score=38.45  Aligned_cols=174  Identities=10%  Similarity=-0.035  Sum_probs=97.5

Q ss_pred             hhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCH-hH---HHHHHHHHHcCCChhHHHHHhhHHHHHHHHh
Q 036356          243 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV-TL---WNAMISGYAKNGYAEEAVKLFPKWMDYYIGK  318 (462)
Q Consensus       243 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  318 (462)
                      .+.+.|++++|.+.|+.+....                  |+. ..   .-.+..+|.+.+++++|...+++.+.    .
T Consensus        41 ~~~~~g~y~~Ai~~f~~l~~~y------------------P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~----~   98 (243)
T PRK10866         41 QKLQDGNWKQAITQLEALDNRY------------------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR----L   98 (243)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC------------------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----h
Confidence            3455788888888888887753                  222 11   23456677888888888888888532    2


Q ss_pred             hCCCCchhHHHHHHHHHHhcCCcchHHHHhccC---CC--CCc-------cchHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036356          319 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT---LD--KDV-------VMRSAMTVGYGLHGLGEEGWVLFHHIRKHG  386 (462)
Q Consensus       319 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~--~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  386 (462)
                      ..-.|+ .-|...+.+.+....   ....|...   ..  .|.       ..+..++.-|=...-..+|...+..+... 
T Consensus        99 ~P~~~~-~~~a~Y~~g~~~~~~---~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~-  173 (243)
T PRK10866         99 NPTHPN-IDYVLYMRGLTNMAL---DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR-  173 (243)
T ss_pred             CcCCCc-hHHHHHHHHHhhhhc---chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-
Confidence            222222 233333333332100   00111111   10  011       13345555555555556665555544431 


Q ss_pred             CCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 036356          387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNM-----PIELRLSVRRALLSAWKIPMQQWENMLQT  446 (462)
Q Consensus       387 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  446 (462)
                        . ...--.+..-|.+.|.+.-|..-++.+     +..........+..+|...|..++|....
T Consensus       174 --l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~  235 (243)
T PRK10866        174 --L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA  235 (243)
T ss_pred             --H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence              1 111124556688999999998888887     33334557778889999999998887544

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.56  E-value=2.1  Score=40.07  Aligned_cols=254  Identities=13%  Similarity=0.038  Sum_probs=138.0

Q ss_pred             HhcCCcccHHHHhhccCCC---C------cchHHHHHHHHHhCc-hHHHHHHHhhhc--CCcchHHHHHHhh--cCccch
Q 036356          185 AKCGSVDLAPMFFDRTLDK---D------VVMRSAMIVGYGLHE-WSAFGSFDGLLS--NEENEYGTALDCS--CDLEFL  250 (462)
Q Consensus       185 ~~~g~~~~a~~~~~~m~~~---~------~~~~~~li~~~~~~~-~~a~~~~~~m~~--~~~~~~~~ll~~~--~~~~~~  250 (462)
                      -+.+++.+|+++|.++.+.   +      .+.-+.++++|..++ +..........+  | ...|-.+..++  -+.+.+
T Consensus        17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k~~   95 (549)
T PF07079_consen   17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQKEY   95 (549)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhhH
Confidence            4567777788777776532   1      223456777887777 444444444444  4 44555555544  377888


Q ss_pred             hhhHHHHHHHHHh--CCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHH
Q 036356          251 EQGKIVHGFMIKL--GLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN  328 (462)
Q Consensus       251 ~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~  328 (462)
                      ..|.+.+.....+  +-.+  ...+.-+..  .-+|-..=+..+.++...|++.++..+++++++..+ ++...-+..+|
T Consensus        96 ~kal~~ls~w~~~~~~~~~--~~Ld~ni~~--l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll-krE~~w~~d~y  170 (549)
T PF07079_consen   96 RKALQALSVWKEQIKGTES--PWLDTNIQQ--LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL-KRECEWNSDMY  170 (549)
T ss_pred             HHHHHHHHHHHhhhccccc--chhhhhHHH--HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-hhhhcccHHHH
Confidence            8888888877665  3222  111111111  114445556677889999999999999999776643 44556788889


Q ss_pred             HHHHHHHHhcC--------CcchHHHHhccC-------CCCCccch----------HHHHHHHHhc--CChHHHHHHHHH
Q 036356          329 TVLIDMYAKCG--------SVDLAPMFFDRT-------LDKDVVMR----------SAMTVGYGLH--GLGEEGWVLFHH  381 (462)
Q Consensus       329 ~~li~~~~~~g--------~~~~A~~~~~~~-------~~~~~~~~----------~~li~~~~~~--~~~~~a~~~~~~  381 (462)
                      +.++-.+++.=        ..+-+...++.+       ...|...|          ..++....-.  .+..--.++++.
T Consensus       171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~  250 (549)
T PF07079_consen  171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN  250 (549)
T ss_pred             HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence            88777666532        122222222222       11122111          1122211111  111112222222


Q ss_pred             HHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC---CCCC----CHHHHHHHHHHHHccCChHHHHHHH
Q 036356          382 IRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM---PIEL----RLSVRRALLSAWKIPMQQWENMLQT  446 (462)
Q Consensus       382 m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~  446 (462)
                      -...-+.|+ .-....|+..+..  +.+++..+.+.+   .+.+    =..++..++...+++++...|-..+
T Consensus       251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l  321 (549)
T PF07079_consen  251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL  321 (549)
T ss_pred             HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            233345665 3344555555555  566666666655   1111    2346778888888888877776444

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.55  E-value=0.2  Score=44.23  Aligned_cols=89  Identities=13%  Similarity=0.069  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhcCCcchHHHHhccCCC--CCc----cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HhHHHH
Q 036356          327 VNTVLIDMYAKCGSVDLAPMFFDRTLD--KDV----VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR----HQHYAR  396 (462)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~  396 (462)
                      .|...+..+.+.|++++|...|+...+  |+.    ..+-.+...|...|++++|...|+.+.+.  .|+    ...+..
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~k  222 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHH
Confidence            344444433445566666666655542  332    23444555556666666666666666552  222    233333


Q ss_pred             HHHHHHhcCChHHHHHHHHhC
Q 036356          397 VVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       397 li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +...+...|++++|.++++.+
T Consensus       223 lg~~~~~~g~~~~A~~~~~~v  243 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQV  243 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            444555556666666666555

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.55  E-value=0.05  Score=36.17  Aligned_cols=55  Identities=11%  Similarity=-0.037  Sum_probs=46.0

Q ss_pred             HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356          397 VVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       397 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                      +...+.+.|++++|.+.|+.. ...| +...|..+...+...|++++|+..+.+.+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456788999999999999998 5556 677899999999999999999988877654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.53  E-value=0.065  Score=47.22  Aligned_cols=99  Identities=18%  Similarity=0.196  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--CC----ccchH
Q 036356          287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD----VVMRS  360 (462)
Q Consensus       287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~  360 (462)
                      .|..-+..+.+.|++++|...|+..+..+ .+....  ...+-.+...|...|++++|...|+.+.+  |+    ...+-
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a--~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQ--PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            35555544556667777777776643210 000011  12444566666667777777776666652  22    12233


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036356          361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPR  390 (462)
Q Consensus       361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  390 (462)
                      .+...+...|+.++|..+|+...+  ..|+
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~--~yP~  249 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIK--KYPG  249 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence            344455566677777777776666  4454

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.50  E-value=1.9  Score=39.39  Aligned_cols=292  Identities=11%  Similarity=0.004  Sum_probs=176.3

Q ss_pred             eHHHHHHHHHh--CCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHH--HhcCCcccHHHHhhccCC-CCcch--H
Q 036356          136 LRNAMISGYAK--NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY--AKCGSVDLAPMFFDRTLD-KDVVM--R  208 (462)
Q Consensus       136 ~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~-~~~~~--~  208 (462)
                      -|.+|-.++..  .|+-..|.++-.+-      ..-+..|..-.-.++.+-  .-.|+.+.|.+-|+.|.. |....  .
T Consensus        84 gyqALStGliAagAGda~lARkmt~~~------~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGL  157 (531)
T COG3898          84 GYQALSTGLIAAGAGDASLARKMTARA------SKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGL  157 (531)
T ss_pred             HHHHHhhhhhhhccCchHHHHHHHHHH------HhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhH
Confidence            35555555543  57888888777662      333555555544455443  346999999999999984 32211  1


Q ss_pred             HHHHHHHHhCc--hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCC
Q 036356          209 SAMIVGYGLHE--WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP  283 (462)
Q Consensus       209 ~~li~~~~~~~--~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  283 (462)
                      ..+.-.--+.|  +.|...-++.-.  |. .......+...|..|+++.|+++++.-+...+.               .+
T Consensus       158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi---------------e~  222 (531)
T COG3898         158 RGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI---------------EK  222 (531)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh---------------ch
Confidence            11211122334  555555554444  33 467788999999999999999999987765542               34


Q ss_pred             CHhH--HHHHHHHHH---cCCChhHHHHHhhHHHHHHHHhhCCCCchh-HHHHHHHHHHhcCCcchHHHHhccCCCCCcc
Q 036356          284 NVTL--WNAMISGYA---KNGYAEEAVKLFPKWMDYYIGKSEYRNNVI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV  357 (462)
Q Consensus       284 ~~~~--~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  357 (462)
                      ++.-  -..|+.+-.   -.-+...|...-.+       ...+.|+.. .-..-..++.+.|++.++-.+++.+-+....
T Consensus       223 ~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~-------a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         223 DVAERSRAVLLTAKAMSLLDADPASARDDALE-------ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH  295 (531)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH-------HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence            4322  222222211   11233334333322       344556532 2223457788999999999999988643333


Q ss_pred             chHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 036356          358 MRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWK  434 (462)
Q Consensus       358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~  434 (462)
                      .--.++..+.+.|+.  +..-+++..+. .++|| ..+...+..+-...|++..|..--+.. ...|....|..|...--
T Consensus       296 P~ia~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIee  373 (531)
T COG3898         296 PDIALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEE  373 (531)
T ss_pred             hHHHHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHh
Confidence            323344555566654  33333333332 37777 677788888888999998887766666 66788888888877655


Q ss_pred             cc-CChHHHHHHHHhhhhcCCCCC
Q 036356          435 IP-MQQWENMLQTIRGIDEGEKTD  457 (462)
Q Consensus       435 ~~-~~~~~a~~~~~~~~~~~~~pd  457 (462)
                      .. |+..+...++-+....--.|+
T Consensus       374 AetGDqg~vR~wlAqav~APrdPa  397 (531)
T COG3898         374 AETGDQGKVRQWLAQAVKAPRDPA  397 (531)
T ss_pred             hccCchHHHHHHHHHHhcCCCCCc
Confidence            44 888777777766655444443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.44  E-value=2.3  Score=39.75  Aligned_cols=89  Identities=12%  Similarity=-0.051  Sum_probs=62.1

Q ss_pred             chHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHH
Q 036356          358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHG-IEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVR-RALLSAWK  434 (462)
Q Consensus       358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~l~~~~~  434 (462)
                      .|..++..-.+..-.+.|..+|-++.+.| +.+++..+++++.-++ .|+...|.++|+-- ...||...| +-.+.-+.
T Consensus       399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi  477 (660)
T COG5107         399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI  477 (660)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            46667777777777888889999998888 6677888888887766 47888888888764 444555544 34555555


Q ss_pred             ccCChHHHHHHHH
Q 036356          435 IPMQQWENMLQTI  447 (462)
Q Consensus       435 ~~~~~~~a~~~~~  447 (462)
                      .-++-..|..++.
T Consensus       478 ~inde~naraLFe  490 (660)
T COG5107         478 RINDEENARALFE  490 (660)
T ss_pred             HhCcHHHHHHHHH
Confidence            5666666654443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.09  E-value=0.18  Score=44.20  Aligned_cols=27  Identities=19%  Similarity=0.388  Sum_probs=15.3

Q ss_pred             CHhHHHHHHHHHHcCCChhHHHHHhhH
Q 036356          284 NVTLWNAMISGYAKNGYAEEAVKLFPK  310 (462)
Q Consensus       284 ~~~~~~~li~~~~~~~~~~~a~~~~~~  310 (462)
                      |...|-.|-..|...|+.+.|..-|.+
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~  181 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRN  181 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHH
Confidence            555555555555555555555555555

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.92  E-value=0.011  Score=46.95  Aligned_cols=127  Identities=17%  Similarity=0.177  Sum_probs=86.3

Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhC
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH  218 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~  218 (462)
                      .++..+.+.+.++.+.++++.+     ...+...+....+.++..|++.++.+...++++....   .....++..+.+.
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~-----~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~   83 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEAL-----VKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKH   83 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHH-----HHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHH-----HhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhc
Confidence            4678888899999999999997     5566667788999999999999999999999995443   4445667777777


Q ss_pred             c--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 036356          219 E--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYA  296 (462)
Q Consensus       219 ~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~  296 (462)
                      +  ++|.-++.++...+     ..+..+...++++.|.+....                      .++...|..+++.+.
T Consensus        84 ~l~~~a~~Ly~~~~~~~-----~al~i~~~~~~~~~a~e~~~~----------------------~~~~~l~~~l~~~~l  136 (143)
T PF00637_consen   84 GLYEEAVYLYSKLGNHD-----EALEILHKLKDYEEAIEYAKK----------------------VDDPELWEQLLKYCL  136 (143)
T ss_dssp             TSHHHHHHHHHCCTTHT-----TCSSTSSSTHCSCCCTTTGGG----------------------CSSSHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHcccHH-----HHHHHHHHHccHHHHHHHHHh----------------------cCcHHHHHHHHHHHH
Confidence            7  67777777664411     111124455566666533322                      256777877877776


Q ss_pred             cCCC
Q 036356          297 KNGY  300 (462)
Q Consensus       297 ~~~~  300 (462)
                      ..+.
T Consensus       137 ~~~~  140 (143)
T PF00637_consen  137 DSKP  140 (143)
T ss_dssp             TSTC
T ss_pred             hcCc
Confidence            6554

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.83  E-value=0.51  Score=41.52  Aligned_cols=106  Identities=11%  Similarity=0.076  Sum_probs=64.3

Q ss_pred             chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCC-HhHHHH
Q 036356          324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHG---LGEEGWVLFHHIRKHGIEPR-HQHYAR  396 (462)
Q Consensus       324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~-~~~~~~  396 (462)
                      |...|-.|...|...|+.+.|..-|.+..+   +|...+..+..++....   ...++..+|+++..  ..|+ ..+...
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral~l  232 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRALSL  232 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHHHH
Confidence            566777777777777777777777765542   45555555555444332   34566677777776  5555 455556


Q ss_pred             HHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036356          397 VVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLS  431 (462)
Q Consensus       397 li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~  431 (462)
                      |...+...|++.+|...++.| ..-|....+..++.
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie  268 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE  268 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence            666677777777777777776 33344444444443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=94.81  E-value=1.5  Score=37.20  Aligned_cols=166  Identities=11%  Similarity=-0.037  Sum_probs=84.3

Q ss_pred             HHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhC
Q 036356          241 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE  320 (462)
Q Consensus       241 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  320 (462)
                      ...+...|++++|.+.|+.+......              .+--....-.++.++.+.|+++.|...+++.+.    ...
T Consensus        12 a~~~~~~g~y~~Ai~~f~~l~~~~P~--------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~----~yP   73 (203)
T PF13525_consen   12 ALEALQQGDYEEAIKLFEKLIDRYPN--------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK----LYP   73 (203)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHHHH-TT--------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----H-T
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCC--------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCC
Confidence            34456788899999999998876432              012234455677888999999999999988543    222


Q ss_pred             CCCchhHHHHHHHHHHhcC----------C---cchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036356          321 YRNNVIVNTVLIDMYAKCG----------S---VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI  387 (462)
Q Consensus       321 ~~p~~~~~~~li~~~~~~g----------~---~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  387 (462)
                      -.|. .-+...+.+.+...          +   ..+|..           .+..++.-|=.+....+|...+..+.+.  
T Consensus        74 ~~~~-~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~-----------~~~~li~~yP~S~y~~~A~~~l~~l~~~--  139 (203)
T PF13525_consen   74 NSPK-ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIE-----------EFEELIKRYPNSEYAEEAKKRLAELRNR--  139 (203)
T ss_dssp             T-TT-HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHH-----------HHHHHHHH-TTSTTHHHHHHHHHHHHHH--
T ss_pred             CCcc-hhhHHHHHHHHHHHhCccchhcccChHHHHHHHH-----------HHHHHHHHCcCchHHHHHHHHHHHHHHH--
Confidence            2222 22222222222111          1   112222           2344555555555555555544444431  


Q ss_pred             CCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHccCChH
Q 036356          388 EPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELR----LSVRRALLSAWKIPMQQW  440 (462)
Q Consensus       388 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~~~~~~~~  440 (462)
                       . ...--.+..-|.+.|.+..|..-++.+ ..-|+    ......++.+|.+.|..+
T Consensus       140 -l-a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  140 -L-AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             -H-HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             -H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence             0 111122445566777777777666665 11122    234456667777776655

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.69  E-value=1.2  Score=37.87  Aligned_cols=202  Identities=8%  Similarity=-0.014  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHHHHHHHHHhCchHHHHHHHhhhc-CC-cchHHHHHHhhcCccch
Q 036356          176 VNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMIVGYGLHEWSAFGSFDGLLS-NE-ENEYGTALDCSCDLEFL  250 (462)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~a~~~~~~m~~-~~-~~~~~~ll~~~~~~~~~  250 (462)
                      .|.-...+|....++++|...+.+..+   .|...| .--++|    +.|..+.+++.+ +. ...|+.....|...|..
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf-hAAKay----EqaamLake~~klsEvvdl~eKAs~lY~E~Gsp  107 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF-HAAKAY----EQAAMLAKELSKLSEVVDLYEKASELYVECGSP  107 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH-HHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence            455556677777888888776655431   111111 111111    445555555544 11 22344445555555555


Q ss_pred             hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHH
Q 036356          251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV  330 (462)
Q Consensus       251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  330 (462)
                      +.|-..++..-+                                ..++-++++|++++.+.+.-.........-...|..
T Consensus       108 dtAAmaleKAak--------------------------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk  155 (308)
T KOG1585|consen  108 DTAAMALEKAAK--------------------------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK  155 (308)
T ss_pred             chHHHHHHHHHH--------------------------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            555554444332                                234456666666666644311111112222344555


Q ss_pred             HHHHHHhcCCcchHHHHhccCCC--------CC-ccchHHHHHHHHhcCChHHHHHHHHHHHHCC--CCC-CHhHHHHHH
Q 036356          331 LIDMYAKCGSVDLAPMFFDRTLD--------KD-VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG--IEP-RHQHYARVV  398 (462)
Q Consensus       331 li~~~~~~g~~~~A~~~~~~~~~--------~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p-~~~~~~~li  398 (462)
                      .-+.+.+..++++|-..|.+-..        ++ ...|-..|-.|.-..++..|.+.+++-.+-+  ..| +..+...|+
T Consensus       156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL  235 (308)
T KOG1585|consen  156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL  235 (308)
T ss_pred             hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence            55566666666666554443321        11 1224455666666777888888877755431  112 255666677


Q ss_pred             HHHHhcCChHHHHHHHH
Q 036356          399 DLLARAGYSNHAFKFIM  415 (462)
Q Consensus       399 ~~~~~~g~~~~A~~~~~  415 (462)
                      .+|- .|+.+++.+++.
T Consensus       236 ~ayd-~gD~E~~~kvl~  251 (308)
T KOG1585|consen  236 TAYD-EGDIEEIKKVLS  251 (308)
T ss_pred             HHhc-cCCHHHHHHHHc
Confidence            6654 577777766543

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.64  E-value=0.0053  Score=48.81  Aligned_cols=130  Identities=18%  Similarity=0.219  Sum_probs=88.8

Q ss_pred             HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhc
Q 036356          290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH  369 (462)
Q Consensus       290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~  369 (462)
                      .+|..+.+.+.++....+++.     +...+...+....+.++..|++.++.++..++++..   +..-...++..|.+.
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~-----~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~yd~~~~~~~c~~~   83 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEA-----LVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NNYDLDKALRLCEKH   83 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHH-----HHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SSS-CTHHHHHHHTT
T ss_pred             HHHHHHHhCCCHHHHHHHHHH-----HHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cccCHHHHHHHHHhc
Confidence            356677778888888888888     555565677888999999999998888888888733   334456778888888


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 036356          370 GLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQ  439 (462)
Q Consensus       370 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~  439 (462)
                      |.++.|.-++.++-...-         .+..+...++++.|.+.+.+.   ++...|..+++.|...+..
T Consensus        84 ~l~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~~---~~~~l~~~l~~~~l~~~~~  141 (143)
T PF00637_consen   84 GLYEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKKV---DDPELWEQLLKYCLDSKPF  141 (143)
T ss_dssp             TSHHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGGC---SSSHHHHHHHHHHCTSTCT
T ss_pred             chHHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHhc---CcHHHHHHHHHHHHhcCcc
Confidence            888877776666443211         111133456666666555554   5688899999998877653

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.59  E-value=0.13  Score=44.42  Aligned_cols=101  Identities=8%  Similarity=0.150  Sum_probs=75.4

Q ss_pred             cCCCcchHHHHHHhhc-----CccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCC----
Q 036356           79 LSNEENEYGTALDCSC-----DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGY----  149 (462)
Q Consensus        79 ~~~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~----  149 (462)
                      -+.|-.+|-..+..+.     +.+.++-....+..|.+.|+                +.|..+|+.||+.+-+..-    
T Consensus        63 ~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGV----------------erDl~vYk~LlnvfPKgkfiP~n  126 (406)
T KOG3941|consen   63 EKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGV----------------ERDLDVYKGLLNVFPKGKFIPQN  126 (406)
T ss_pred             ccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcc----------------hhhHHHHHHHHHhCcccccccHH
Confidence            3566677777777664     34567777788899999999                8999999999988766532    


Q ss_pred             ------------hhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcc-cHHHHhhcc
Q 036356          150 ------------AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD-LAPMFFDRT  200 (462)
Q Consensus       150 ------------~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m  200 (462)
                                  -+=++.++++|     ...|+.||..+-..|++++.+.+-.- +..+++-.|
T Consensus       127 vfQ~~F~HYP~QQ~C~I~vLeqM-----E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm  185 (406)
T KOG3941|consen  127 VFQKVFLHYPQQQNCAIKVLEQM-----EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM  185 (406)
T ss_pred             HHHHHHhhCchhhhHHHHHHHHH-----HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence                        23368899998     89999999999999999998876532 333443333

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=94.56  E-value=0.095  Score=35.74  Aligned_cols=53  Identities=17%  Similarity=0.006  Sum_probs=43.1

Q ss_pred             HhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356           91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus        91 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      ..+.+.++++.|.++++.+.+.++                 .+...|......+.+.|++++|.+.|+..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p-----------------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~   55 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDP-----------------DDPELWLQRARCLFQLGRYEEALEDLERA   55 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCc-----------------ccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence            456778888888888888888865                 57777777888888888888888888886

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.55  E-value=2  Score=34.66  Aligned_cols=116  Identities=14%  Similarity=0.172  Sum_probs=78.0

Q ss_pred             HHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhHH
Q 036356          316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPRHQHY  394 (462)
Q Consensus       316 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~  394 (462)
                      +...++.|+...|..+++.+.+.|+...-..++..-.-+|.......+-.+.  +.+..+.++--+|.++ +     ..+
T Consensus        20 l~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~-----~~~   92 (167)
T PF07035_consen   20 LNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG-----TAY   92 (167)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh-----hhH
Confidence            4567899999999999999999999888888777655555554444443332  2334444444444432 1     156


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 036356          395 ARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQ  439 (462)
Q Consensus       395 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~  439 (462)
                      ..+++.+...|++-+|+++.+..+. .+......++.+....++.
T Consensus        93 ~~iievLL~~g~vl~ALr~ar~~~~-~~~~~~~~fLeAA~~~~D~  136 (167)
T PF07035_consen   93 EEIIEVLLSKGQVLEALRYARQYHK-VDSVPARKFLEAAANSNDD  136 (167)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCC-cccCCHHHHHHHHHHcCCH
Confidence            7888899999999999999988621 2233345567776666654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.52  E-value=3.9  Score=43.07  Aligned_cols=114  Identities=11%  Similarity=0.101  Sum_probs=76.3

Q ss_pred             CCCHhHHHHHHH----HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCcc
Q 036356          282 QPNVTLWNAMIS----GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV  357 (462)
Q Consensus       282 ~~~~~~~~~li~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  357 (462)
                      +|+...+..+..    -+...+.+++|.-.|+.        .|      -..--+.+|..+|+|.+|..+...+..+-..
T Consensus       932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~--------~G------klekAl~a~~~~~dWr~~l~~a~ql~~~~de  997 (1265)
T KOG1920|consen  932 KPDSEKQKVIYEAYADHLREELMSDEAALMYER--------CG------KLEKALKAYKECGDWREALSLAAQLSEGKDE  997 (1265)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHH--------hc------cHHHHHHHHHHhccHHHHHHHHHhhcCCHHH
Confidence            466655554443    44456677777666655        11      1123467788888899888888887754322


Q ss_pred             ch---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          358 MR---SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       358 ~~---~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .-   ..|+.-+...++.-+|-++..+-..        ...-.+..|+++..|++|.++....
T Consensus       998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~~s--------d~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen  998 LVILAEELVSRLVEQRKHYEAAKILLEYLS--------DPEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHHHHHHHHHHHHHcccchhHHHHHHHHhc--------CHHHHHHHHhhHhHHHHHHHHHHhc
Confidence            22   5677888888888888888877765        1244566778888899998887766

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.50  E-value=6.7  Score=41.43  Aligned_cols=293  Identities=10%  Similarity=0.034  Sum_probs=133.4

Q ss_pred             HHHHHHhCCChhHHHHHHHHhhhhhhhhcCC--CCCchHHHHHHHHHHhc-CCcccHHHHhhccCCCCcc--hHHH----
Q 036356          140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEY--RNNVIVNTVLIDMYAKC-GSVDLAPMFFDRTLDKDVV--MRSA----  210 (462)
Q Consensus       140 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~--~~~~----  210 (462)
                      -+.-+.+.+++.+|.++.++-+    ....+  .-+...|-.=+.++.+. ++.+-...++..+++.|+.  .|..    
T Consensus       683 ~vr~~l~~~~y~~AF~~~RkhR----idlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s  758 (1265)
T KOG1920|consen  683 KVRTLLDRLRYKEAFEVMRKHR----IDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGS  758 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc----cCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccc
Confidence            3455677788888888776642    11111  11233333333344443 5566666666666643321  1111    


Q ss_pred             HHHHHHhCc---hHHHHHHHhhhc------CCcchHHHHHHhhcCcc--chhhhHHHHHHHHHhCCCcchHHHHHHHHhh
Q 036356          211 MIVGYGLHE---WSAFGSFDGLLS------NEENEYGTALDCSCDLE--FLEQGKIVHGFMIKLGLELESDLLISLTAVC  279 (462)
Q Consensus       211 li~~~~~~~---~~a~~~~~~m~~------~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  279 (462)
                      -...|....   .+.-.+++.+..      |+ ...-.+|.++.+.+  .++++++..........  ...+=.++=.+|
T Consensus       759 ~k~~~~~r~~~d~kv~~vc~~vr~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~--~~~ad~al~hll  835 (1265)
T KOG1920|consen  759 GKQVYMSRDPYDNKVNSVCDAVRNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQV--AVSADEALKHLL  835 (1265)
T ss_pred             cceeEEeccchhhHHHHHHHHHHHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc--chhHHHHHHHHH
Confidence            111122222   223333333333      44 56667888888877  78888877777765221  222222222223


Q ss_pred             cCCCCHhHHHHHHH----------HHHcCCChhHHHHHhhHHHHHHHHhhCCCCc--hhHHHHHHHHHHhcC--CcchHH
Q 036356          280 RYQPNVTLWNAMIS----------GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN--VIVNTVLIDMYAKCG--SVDLAP  345 (462)
Q Consensus       280 ~~~~~~~~~~~li~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g--~~~~A~  345 (462)
                      -..+.-..|++-+.          +-....++.+-+-++++.-...-..+.+..|  ..-|...+.-+.+.|  -++++.
T Consensus       836 ~Lvdvn~lfn~ALgtYDl~Lal~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~  915 (1265)
T KOG1920|consen  836 FLVDVNELFNSALGTYDLDLALLVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECK  915 (1265)
T ss_pred             hhccHHHHHHhhhcccchHHHHHHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHH
Confidence            32333333443322          2233445555555554421100111222222  223444444444444  344444


Q ss_pred             HHhccCC---------CCCccc----hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 036356          346 MFFDRTL---------DKDVVM----RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFK  412 (462)
Q Consensus       346 ~~~~~~~---------~~~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  412 (462)
                      ++.++=.         .|+...    |.+....+.....+++|.-.|+..-+         ..--+.+|..+|+|.+|+.
T Consensus       916 n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~  986 (1265)
T KOG1920|consen  916 NYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALS  986 (1265)
T ss_pred             HHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHH
Confidence            4443221         234333    33333334444555555544443322         1234455666666666666


Q ss_pred             HHHhCCCCCCHHH--HHHHHHHHHccCChHHHHHHHHh
Q 036356          413 FIMNMPIELRLSV--RRALLSAWKIPMQQWENMLQTIR  448 (462)
Q Consensus       413 ~~~~m~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~  448 (462)
                      +-.++....|...  -..|..-+..+++..+|.+.+.+
T Consensus       987 ~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen  987 LAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence            6666632233322  24556666666666666544443

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=94.36  E-value=1  Score=45.32  Aligned_cols=351  Identities=13%  Similarity=0.092  Sum_probs=146.4

Q ss_pred             CCceeehhh--hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchh-------hHHHHHHHHHHhcCCcchhH
Q 036356           53 RTIVFLDLY--HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLE-------QGKIVHGFMIKLGLELESDL  120 (462)
Q Consensus        53 ~~~~~~~~~--~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~-------~a~~~~~~m~~~g~~~~~~~  120 (462)
                      .+...|..+  +.+.|++++|.++....   .......|...+..+....+-.       +...-|++..+...  ..|.
T Consensus       110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~--~~Dp  187 (613)
T PF04097_consen  110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST--DGDP  187 (613)
T ss_dssp             TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T--TS-H
T ss_pred             CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC--CCCh
Confidence            355678888  99999999999999666   6666778899999997754322       33334444433322  1144


Q ss_pred             ----HHHHhhhcCC----CCCe----eeHHHHHHHHHhCCC-----------hhHHHHHHHHhhhhhhhhcCCCCCchHH
Q 036356          121 ----LISLTAVCRY----QPNV----TLRNAMISGYAKNGY-----------AEEAVKLFPKWMDYYIGKSEYRNNVIVN  177 (462)
Q Consensus       121 ----l~~~~~~~~~----~p~~----~~~~~li~~~~~~g~-----------~~~a~~~~~~m~~~~~~~~~~~~~~~~~  177 (462)
                          +....++|..    .|.+    .-|--+=-.+++...           +++..+.+.+.     .+..+.++. ..
T Consensus       188 yK~AvY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~-----Ge~~F~~~~-~p  261 (613)
T PF04097_consen  188 YKRAVYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKY-----GESHFNAGS-NP  261 (613)
T ss_dssp             HHHHHHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT-----
T ss_pred             HHHHHHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHh-----chhhcccch-hH
Confidence                4555555552    1211    112111112222221           22222222222     233333311 11


Q ss_pred             HHHHHHHHhcCCcccHHHHhhc--cCCCCcchHHHHHHHHHhCc-hHHHHHHHhhhc-----CCcchHHHHHHhhcC---
Q 036356          178 TVLIDMYAKCGSVDLAPMFFDR--TLDKDVVMRSAMIVGYGLHE-WSAFGSFDGLLS-----NEENEYGTALDCSCD---  246 (462)
Q Consensus       178 ~~li~~~~~~g~~~~a~~~~~~--m~~~~~~~~~~li~~~~~~~-~~a~~~~~~m~~-----~~~~~~~~ll~~~~~---  246 (462)
                      -.....+.-+|+++.|++++-+  ....|.+...+.+.-|.--. .....  ..+..     |...-+..||..|++   
T Consensus       262 ~~Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~--~~lls~~~~~~~~ln~arLI~~Y~~~F~  339 (613)
T PF04097_consen  262 LLYFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS--APLLSVDPGDPPPLNFARLIGQYTRSFE  339 (613)
T ss_dssp             --HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc--cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence            2244556678999999999887  22334555444444332222 11100  22222     222456777777764   


Q ss_pred             ccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCC-ChhHHHHHhhHHHHHHHHhhCCCCch
Q 036356          247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG-YAEEAVKLFPKWMDYYIGKSEYRNNV  325 (462)
Q Consensus       247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~p~~  325 (462)
                      ..+..+|.+.+-.+....-+.....+...++..  -....-|..++.-.-..| +...+++--..       --++..+.
T Consensus       340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eL--vletref~~LLG~i~~dG~r~~G~i~~~~~-------Li~~~~~~  410 (613)
T PF04097_consen  340 ITDPREALQYLYLICLFKDPEQRNLFHECLREL--VLETREFDLLLGDINPDGSRTPGLIERRLS-------LIKFDDDE  410 (613)
T ss_dssp             TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHH--HHHH--HHHHHEEE-TTS-EEE-HHHHTGG-------GGT-SSSS
T ss_pred             ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH--HHccCCHHHHCCCCCCCCccccceeecccc-------ccCCCCcH
Confidence            445566666665544332211111111111110  000111111111000011 01111111000       01122222


Q ss_pred             hHHHHH----HHHHHhcCCcchHHHHhccCCCCCcc--chHHHHH-HHHhcCC-----------hHHHHHHHHHHHHCC-
Q 036356          326 IVNTVL----IDMYAKCGSVDLAPMFFDRTLDKDVV--MRSAMTV-GYGLHGL-----------GEEGWVLFHHIRKHG-  386 (462)
Q Consensus       326 ~~~~~l----i~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~-~~~~~~~-----------~~~a~~~~~~m~~~g-  386 (462)
                      .....+    ..-+...|++++|..+|.-..+.|.+  ..|.++. +......           ...|.++.+.....+ 
T Consensus       411 ~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~  490 (613)
T PF04097_consen  411 DFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPH  490 (613)
T ss_dssp             HHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcc
Confidence            222222    23456678888888888877654322  2333332 2222222           345555555554432 


Q ss_pred             ----CCCC-HhHHHHHHHH-----HHhcCChHHHHHHHHhCCCCCC
Q 036356          387 ----IEPR-HQHYARVVDL-----LARAGYSNHAFKFIMNMPIELR  422 (462)
Q Consensus       387 ----~~p~-~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~p~  422 (462)
                          +.+. ..|+..|++.     +...|++++|++.++++++-|.
T Consensus       491 ~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP~  536 (613)
T PF04097_consen  491 ISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIPL  536 (613)
T ss_dssp             HHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-S
T ss_pred             hHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence                2222 4556555543     4678999999999999976663

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.12  E-value=3.5  Score=35.64  Aligned_cols=153  Identities=13%  Similarity=0.022  Sum_probs=99.3

Q ss_pred             hcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC
Q 036356          244 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN  323 (462)
Q Consensus       244 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p  323 (462)
                      -.+.|++++|.+.|+.+.....- +             +-...+--.++.++.+.+++++|+...++.    +...+-.|
T Consensus        44 ~L~~gn~~~A~~~fe~l~~~~p~-s-------------~~~~qa~l~l~yA~Yk~~~y~~A~~~~drF----i~lyP~~~  105 (254)
T COG4105          44 ELQKGNYEEAIKYFEALDSRHPF-S-------------PYSEQAQLDLAYAYYKNGEYDLALAYIDRF----IRLYPTHP  105 (254)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCC-C-------------cccHHHHHHHHHHHHhcccHHHHHHHHHHH----HHhCCCCC
Confidence            34789999999999999866432 1             123455566777899999999999999985    33444455


Q ss_pred             chhHHHHHHHHHHhc-------CCcchHHHHhccCC---C--CCcc------c-----------h-HHHHHHHHhcCChH
Q 036356          324 NVIVNTVLIDMYAKC-------GSVDLAPMFFDRTL---D--KDVV------M-----------R-SAMTVGYGLHGLGE  373 (462)
Q Consensus       324 ~~~~~~~li~~~~~~-------g~~~~A~~~~~~~~---~--~~~~------~-----------~-~~li~~~~~~~~~~  373 (462)
                      |. -|...|.+++.-       .|...+..-|..+.   +  ||..      .           + ..+.+-|.+.|.+.
T Consensus       106 n~-dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~  184 (254)
T COG4105         106 NA-DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV  184 (254)
T ss_pred             Ch-hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence            43 344444444432       22233333343332   1  3322      1           1 24556788888888


Q ss_pred             HHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          374 EGWVLFHHIRKHGIEPR----HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       374 ~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .|..-+++|.+.  -|+    ...+-.+..+|...|-.++|.+.-+-+
T Consensus       185 AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl  230 (254)
T COG4105         185 AAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL  230 (254)
T ss_pred             HHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            898888888886  232    445667788888888888888776666

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.12  E-value=0.8  Score=43.79  Aligned_cols=102  Identities=15%  Similarity=0.105  Sum_probs=56.8

Q ss_pred             HHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHH
Q 036356          295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE  374 (462)
Q Consensus       295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  374 (462)
                      ..+.|+++.|.++..+           .++...|..|.+...+.|+++-|++.|.+..+     |..|+-.|...|+.+.
T Consensus       328 Al~lg~L~~A~~~a~~-----------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~  391 (443)
T PF04053_consen  328 ALQLGNLDIALEIAKE-----------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREK  391 (443)
T ss_dssp             HHHCT-HHHHHHHCCC-----------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHH
T ss_pred             HHhcCCHHHHHHHHHh-----------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHH
Confidence            3445555555555433           23555666666666666777777666666544     5566666666666666


Q ss_pred             HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036356          375 GWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP  418 (462)
Q Consensus       375 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  418 (462)
                      -.++.+....+|-      ++....++.-.|+.++..+++.+-+
T Consensus       392 L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  392 LSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             HHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            5555555554332      4444555555566666666666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.02  E-value=1.2  Score=35.47  Aligned_cols=48  Identities=13%  Similarity=0.044  Sum_probs=24.7

Q ss_pred             hcCCcchHHHHhccCC--CCCccchHH-HHHHHHhcCChHHHHHHHHHHHH
Q 036356          337 KCGSVDLAPMFFDRTL--DKDVVMRSA-MTVGYGLHGLGEEGWVLFHHIRK  384 (462)
Q Consensus       337 ~~g~~~~A~~~~~~~~--~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~  384 (462)
                      +.++.+++..+++.+.  +|....... -...+...|++.+|..+|+++..
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            4555666666666554  343332221 12334456666666666666554

>PRK15331 chaperone protein SicA; Provisional

Probab=93.98  E-value=0.19  Score=40.05  Aligned_cols=82  Identities=9%  Similarity=-0.255  Sum_probs=66.9

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +-..|++++|..+|.-+   ...|..-|..|..++-..+++++|...|......+.                 -|+..+-
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-----------------~dp~p~f  109 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-----------------NDYRPVF  109 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----------------CCCCccc
Confidence            78899999999999998   444555566666666678999999999999887765                 4555555


Q ss_pred             HHHHHHHhCCChhHHHHHHHHh
Q 036356          139 AMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      ....++...|+.+.|...|+..
T Consensus       110 ~agqC~l~l~~~~~A~~~f~~a  131 (165)
T PRK15331        110 FTGQCQLLMRKAAKARQCFELV  131 (165)
T ss_pred             hHHHHHHHhCCHHHHHHHHHHH
Confidence            6788999999999999999985

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.81  E-value=2.6  Score=33.08  Aligned_cols=128  Identities=16%  Similarity=0.116  Sum_probs=86.8

Q ss_pred             hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHH
Q 036356          236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY  315 (462)
Q Consensus       236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  315 (462)
                      ....++..+.+.+.......+++.+.+.+.                 .+....+.++..|++.+ .++..+.+..     
T Consensus         9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-----------------~~~~~~~~li~ly~~~~-~~~ll~~l~~-----   65 (140)
T smart00299        9 DVSEVVELFEKRNLLEELIPYLESALKLNS-----------------ENPALQTKLIELYAKYD-PQKEIERLDN-----   65 (140)
T ss_pred             CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-----------------cchhHHHHHHHHHHHHC-HHHHHHHHHh-----
Confidence            345667777777888889999998887762                 46667888888888764 3444444431     


Q ss_pred             HHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHhHH
Q 036356          316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH-GLGEEGWVLFHHIRKHGIEPRHQHY  394 (462)
Q Consensus       316 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~  394 (462)
                            ..+......+++.|.+.+.++++..++.++..     |...+..+... ++++.|.+++.+-      -+...|
T Consensus        66 ------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw  128 (140)
T smart00299       66 ------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELW  128 (140)
T ss_pred             ------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHH
Confidence                  12334444578888888888888888887744     44455555555 7888888877752      256677


Q ss_pred             HHHHHHHHh
Q 036356          395 ARVVDLLAR  403 (462)
Q Consensus       395 ~~li~~~~~  403 (462)
                      ..++..+..
T Consensus       129 ~~~~~~~l~  137 (140)
T smart00299      129 AEVLKALLD  137 (140)
T ss_pred             HHHHHHHHc
Confidence            777776654

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.77  E-value=0.94  Score=39.40  Aligned_cols=114  Identities=10%  Similarity=0.135  Sum_probs=73.6

Q ss_pred             CCHhHHHHHHHHHHcC-----CChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCcc
Q 036356          283 PNVTLWNAMISGYAKN-----GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV  357 (462)
Q Consensus       283 ~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  357 (462)
                      .|-.+|-..+..+...     +.++-....++.     |.+.|+.-|..+|+.|++.+-+..-.-               
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~-----m~eyGVerDl~vYk~LlnvfPKgkfiP---------------  124 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKY-----MKEYGVERDLDVYKGLLNVFPKGKFIP---------------  124 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHH-----HHHhcchhhHHHHHHHHHhCccccccc---------------
Confidence            4455555555555432     334444444444     788999999999999998876533221               


Q ss_pred             chHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChH-HHHHHHHhC
Q 036356          358 MRSAMTVGYGLH-GLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSN-HAFKFIMNM  417 (462)
Q Consensus       358 ~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m  417 (462)
                       -|.+-..+..- .+-+-++++++.|...|+.||..+-..|+++|.+.+-.- +..++.-.|
T Consensus       125 -~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm  185 (406)
T KOG3941|consen  125 -QNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM  185 (406)
T ss_pred             -HHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence             11222222211 233668999999999999999999999999999988643 334444344

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.48  E-value=6.4  Score=36.53  Aligned_cols=165  Identities=14%  Similarity=0.043  Sum_probs=98.1

Q ss_pred             chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc---CCChhHHHHHhhHH
Q 036356          235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK---NGYAEEAVKLFPKW  311 (462)
Q Consensus       235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~  311 (462)
                      .+...++-+|....+++...++.+.+...-...             +.-....-.-..-++.+   .|+.++|++++.. 
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~-------------~~~~~~i~~~yafALnRrn~~gdre~Al~il~~-  207 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCD-------------VANQHNIKFQYAFALNRRNKPGDREKALQILLP-  207 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc-------------hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHH-
Confidence            334456667888999999999999887642100             00111111223335556   8999999999988 


Q ss_pred             HHHHHHhhCCCCchhHHHHHHHHHHh----c-----CCcchHHHHhccCCCCCccchH--HHHHHHHhcCCh----HHHH
Q 036356          312 MDYYIGKSEYRNNVIVNTVLIDMYAK----C-----GSVDLAPMFFDRTLDKDVVMRS--AMTVGYGLHGLG----EEGW  376 (462)
Q Consensus       312 ~~~~~~~~~~~p~~~~~~~li~~~~~----~-----g~~~~A~~~~~~~~~~~~~~~~--~li~~~~~~~~~----~~a~  376 (462)
                          .....-.++..+|..+...|..    .     ...++|...|.+.-+-+...|+  .+...+...|.-    .+..
T Consensus       208 ----~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~  283 (374)
T PF13281_consen  208 ----VLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELR  283 (374)
T ss_pred             ----HHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHH
Confidence                3445566778899888877653    1     2356777777766543333332  222233333322    2333


Q ss_pred             HHH---HHHH-HCCCCCCHh---HHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          377 VLF---HHIR-KHGIEPRHQ---HYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       377 ~~~---~~m~-~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      ++-   ..+. +.|..-+..   -+.+++.+..-.|+.++|.+..++|
T Consensus       284 ~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~  331 (374)
T PF13281_consen  284 KIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA  331 (374)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            333   2222 234333322   3467888888899999999999988

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.27  E-value=6.9  Score=36.29  Aligned_cols=282  Identities=10%  Similarity=-0.033  Sum_probs=152.2

Q ss_pred             HhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCC
Q 036356           91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY  170 (462)
Q Consensus        91 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  170 (462)
                      ..+.+..++..|+..+....+..+                 -+..-|..=...+..-|++++|.--.+.-       ..+
T Consensus        57 n~~yk~k~Y~nal~~yt~Ai~~~p-----------------d~a~yy~nRAa~~m~~~~~~~a~~dar~~-------~r~  112 (486)
T KOG0550|consen   57 NAFYKQKTYGNALKNYTFAIDMCP-----------------DNASYYSNRAATLMMLGRFEEALGDARQS-------VRL  112 (486)
T ss_pred             chHHHHhhHHHHHHHHHHHHHhCc-----------------cchhhhchhHHHHHHHHhHhhcccchhhh-------eec
Confidence            344455667778888888877765                 34455555555666666666665544332       111


Q ss_pred             CCC-chHHHHHHHHHHhcCCcccHHHHhh---------------ccCC-----CCcchHHHHH-HHHHhCc--hHHHHHH
Q 036356          171 RNN-VIVNTVLIDMYAKCGSVDLAPMFFD---------------RTLD-----KDVVMRSAMI-VGYGLHE--WSAFGSF  226 (462)
Q Consensus       171 ~~~-~~~~~~li~~~~~~g~~~~a~~~~~---------------~m~~-----~~~~~~~~li-~~~~~~~--~~a~~~~  226 (462)
                      +|. ...+.-.-+++...++..+|...++               ....     |-..+|-.+- .++...+  .+|...-
T Consensus       113 kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea  192 (486)
T KOG0550|consen  113 KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA  192 (486)
T ss_pred             CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence            111 1122222223333333333332222               2111     1222232221 2233333  5555555


Q ss_pred             Hhhhc-CCcchHHHHHHhhc--CccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhH
Q 036356          227 DGLLS-NEENEYGTALDCSC--DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEE  303 (462)
Q Consensus       227 ~~m~~-~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~  303 (462)
                      -..++ .....+...+++.+  -.++.+.+...|++.++.+  |+...-...-..+   .-...|..=-.-..+.|++.+
T Consensus       193 ~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~---k~le~~k~~gN~~fk~G~y~~  267 (486)
T KOG0550|consen  193 IDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMP---KKLEVKKERGNDAFKNGNYRK  267 (486)
T ss_pred             HHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhH---HHHHHHHhhhhhHhhccchhH
Confidence            55555 33344445554443  5677888888888776643  2222111111110   001122222334668999999


Q ss_pred             HHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCcc-chHHHH--HHHHhcCChHHHHHHHH
Q 036356          304 AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV-MRSAMT--VGYGLHGLGEEGWVLFH  380 (462)
Q Consensus       304 a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li--~~~~~~~~~~~a~~~~~  380 (462)
                      |.+.+.+.+.  +...+..|+...|.....+..+.|+..+|+.--++...-|.. ++..+.  .++...+++++|++-++
T Consensus       268 A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~  345 (486)
T KOG0550|consen  268 AYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYE  345 (486)
T ss_pred             HHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998664  445566777778888888888999999998877777654433 233333  33445678899999998


Q ss_pred             HHHHCCCCCC-HhHHHHHHHHHHh
Q 036356          381 HIRKHGIEPR-HQHYARVVDLLAR  403 (462)
Q Consensus       381 ~m~~~g~~p~-~~~~~~li~~~~~  403 (462)
                      ...+....+. ..++.-...++-+
T Consensus       346 ~a~q~~~s~e~r~~l~~A~~aLkk  369 (486)
T KOG0550|consen  346 KAMQLEKDCEIRRTLREAQLALKK  369 (486)
T ss_pred             HHHhhccccchHHHHHHHHHHHHH
Confidence            8877544443 3455544445443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=93.19  E-value=0.37  Score=45.18  Aligned_cols=61  Identities=10%  Similarity=0.031  Sum_probs=55.3

Q ss_pred             CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----QHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +...|+.+..+|...|++++|+..|++..+  +.|+.    .+|..+..+|...|+.++|+..+++.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA  138 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA  138 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455788999999999999999999999998  78884    35899999999999999999999998

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=92.93  E-value=3.9  Score=37.81  Aligned_cols=162  Identities=11%  Similarity=-0.040  Sum_probs=89.5

Q ss_pred             CCHhHHHHH-HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHH--HHhcCCcchHHHHhccCCCCCccch
Q 036356          283 PNVTLWNAM-ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM--YAKCGSVDLAPMFFDRTLDKDVVMR  359 (462)
Q Consensus       283 ~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~  359 (462)
                      |...+|-.+ ..++...|+.++|.+.-.+.     .+..   ....+...+++  +--.++.+.|..-|++....|....
T Consensus       166 pac~~a~~lka~cl~~~~~~~~a~~ea~~i-----lkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~  237 (486)
T KOG0550|consen  166 PACFKAKLLKAECLAFLGDYDEAQSEAIDI-----LKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQ  237 (486)
T ss_pred             chhhHHHHhhhhhhhhcccchhHHHHHHHH-----Hhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhh
Confidence            444444443 23455667777777766552     1111   12233333433  2235667777777776664222211


Q ss_pred             ---------------HHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 036356          360 ---------------SAMTVGYGLHGLGEEGWVLFHHIRKH---GIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIE  420 (462)
Q Consensus       360 ---------------~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~  420 (462)
                                     .-=..-..+.|++..|.+.+.+.+..   ++.|+...|.-...+..+.|+.++|+.-.++. .+.
T Consensus       238 ~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD  317 (486)
T KOG0550|consen  238 KSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID  317 (486)
T ss_pred             hHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence                           11122345677888888888887763   34444556666666777888888888877776 443


Q ss_pred             CCH-HHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          421 LRL-SVRRALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       421 p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      |.. ..+..-..++...+++++|++.+.+.++.
T Consensus       318 ~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  318 SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            321 12223334455557777777777765543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.92  E-value=0.6  Score=41.16  Aligned_cols=82  Identities=7%  Similarity=0.012  Sum_probs=67.5

Q ss_pred             hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhh
Q 036356           85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYY  164 (462)
Q Consensus        85 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  164 (462)
                      ++..++..+...|+++.+...++++....+                 -+...|..+|.+|.+.|+...|+..|+++....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-----------------~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~  217 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDP-----------------YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL  217 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-----------------cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence            455567777778888888888888888765                 788899999999999999999999999985445


Q ss_pred             hhhcCCCCCchHHHHHHHH
Q 036356          165 IGKSEYRNNVIVNTVLIDM  183 (462)
Q Consensus       165 ~~~~~~~~~~~~~~~li~~  183 (462)
                      ....|+.|...+.......
T Consensus       218 ~edlgi~P~~~~~~~y~~~  236 (280)
T COG3629         218 AEELGIDPAPELRALYEEI  236 (280)
T ss_pred             hhhcCCCccHHHHHHHHHH
Confidence            5678999988887776666

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.90  E-value=2  Score=33.66  Aligned_cols=19  Identities=11%  Similarity=0.041  Sum_probs=9.4

Q ss_pred             HHhcCChHHHHHHHHHHHH
Q 036356          366 YGLHGLGEEGWVLFHHIRK  384 (462)
Q Consensus       366 ~~~~~~~~~a~~~~~~m~~  384 (462)
                      +...|++++|.++|++..+
T Consensus        54 ~i~rg~w~eA~rvlr~l~~   72 (153)
T TIGR02561        54 LIARGNYDEAARILRELLS   72 (153)
T ss_pred             HHHcCCHHHHHHHHHhhhc
Confidence            3344555555555555544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=92.76  E-value=0.41  Score=44.90  Aligned_cols=62  Identities=11%  Similarity=-0.053  Sum_probs=54.9

Q ss_pred             chhHHHHHHHHHHhcCCcchHHHHhccCC--CCCcc----chHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036356          324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVV----MRSAMTVGYGLHGLGEEGWVLFHHIRKH  385 (462)
Q Consensus       324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~  385 (462)
                      +...++.+..+|.+.|++++|...|++..  .|+..    +|..+..+|...|+.++|++.+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46788999999999999999999999866  46543    5899999999999999999999999984

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=92.11  E-value=0.65  Score=39.35  Aligned_cols=50  Identities=16%  Similarity=0.180  Sum_probs=37.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCChHHHHH
Q 036356          361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPR----HQHYARVVDLLARAGYSNHAFK  412 (462)
Q Consensus       361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~  412 (462)
                      .+.+-|.+.|.+..|..-++.+.+.  -|+    ......++.+|.+.|..+.|..
T Consensus       146 ~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  146 YIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             HHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence            3567788999999999999999985  344    4566888899999998885543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.88  E-value=2.6  Score=37.80  Aligned_cols=149  Identities=11%  Similarity=0.028  Sum_probs=104.6

Q ss_pred             CccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCch
Q 036356          246 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV  325 (462)
Q Consensus       246 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~  325 (462)
                      -.|+..+|-..++.+.+.-                 +.|...++..-+++.-.|+.+.-...+++.+.      ...|+.
T Consensus       115 ~~g~~h~a~~~wdklL~d~-----------------PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip------~wn~dl  171 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDY-----------------PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP------KWNADL  171 (491)
T ss_pred             ccccccHHHHHHHHHHHhC-----------------chhhhhhhhhhhHHHhccchhhhhhHHHHhcc------ccCCCC
Confidence            3567777777788777753                 46888888888999999999988888887432      234444


Q ss_pred             hHHH----HHHHHHHhcCCcchHHHHhccCCCCCc-cch--HHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHhHHH
Q 036356          326 IVNT----VLIDMYAKCGSVDLAPMFFDRTLDKDV-VMR--SAMTVGYGLHGLGEEGWVLFHHIRKH---GIEPRHQHYA  395 (462)
Q Consensus       326 ~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~  395 (462)
                      ..|.    .+.-++..+|-+++|++.-++..+-|. .+|  .++...+-..|+..++.++..+-...   +.-.-...|-
T Consensus       172 p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyW  251 (491)
T KOG2610|consen  172 PCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYW  251 (491)
T ss_pred             cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhH
Confidence            3332    233345679999999999998876433 344  45666677789999999888775543   2222245566


Q ss_pred             HHHHHHHhcCChHHHHHHHHhC
Q 036356          396 RVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       396 ~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      ...-.+...+.++.|+++|+.-
T Consensus       252 H~Al~~iE~aeye~aleIyD~e  273 (491)
T KOG2610|consen  252 HTALFHIEGAEYEKALEIYDRE  273 (491)
T ss_pred             HHHHhhhcccchhHHHHHHHHH
Confidence            6666677889999999999864

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=91.72  E-value=1  Score=34.30  Aligned_cols=135  Identities=17%  Similarity=0.119  Sum_probs=75.7

Q ss_pred             HHHHH--HHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC-CCcc---hHHHHH
Q 036356          139 AMISG--YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDVV---MRSAMI  212 (462)
Q Consensus       139 ~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~---~~~~li  212 (462)
                      .|+.+  +.-.|.+++..++..+.     ..+   .+..-||-+|--....-+-+-..++++.+-+ -|..   ..-.++
T Consensus         5 kLmeAK~~ildG~V~qGveii~k~-----v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi   76 (161)
T PF09205_consen    5 KLMEAKERILDGDVKQGVEIIEKT-----VNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVI   76 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH-----HHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHH
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHH-----cCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHH
Confidence            34444  45578888888888886     221   1233444444444444455555666655442 1211   223455


Q ss_pred             HHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHH
Q 036356          213 VGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI  292 (462)
Q Consensus       213 ~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li  292 (462)
                      .+|...+            .+...+...+..+...|.-+.-.+++..+.+.+                 +++....-.+.
T Consensus        77 ~C~~~~n------------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-----------------~~~p~~L~kia  127 (161)
T PF09205_consen   77 ECYAKRN------------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-----------------EINPEFLVKIA  127 (161)
T ss_dssp             HHHHHTT---------------HHHHHHHHHHHHTT-HHHHHHHHHHH----------------------S-HHHHHHHH
T ss_pred             HHHHHhc------------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-----------------CCCHHHHHHHH
Confidence            5555544            344455666777778888888888888877643                 37777777888


Q ss_pred             HHHHcCCChhHHHHHhhH
Q 036356          293 SGYAKNGYAEEAVKLFPK  310 (462)
Q Consensus       293 ~~~~~~~~~~~a~~~~~~  310 (462)
                      .+|.+.|+..++.+++.+
T Consensus       128 ~Ay~klg~~r~~~ell~~  145 (161)
T PF09205_consen  128 NAYKKLGNTREANELLKE  145 (161)
T ss_dssp             HHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHhcchhhHHHHHHH
Confidence            888888888888888877

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=91.49  E-value=0.47  Score=37.92  Aligned_cols=89  Identities=9%  Similarity=-0.052  Sum_probs=69.6

Q ss_pred             HhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCC
Q 036356           91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY  170 (462)
Q Consensus        91 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  170 (462)
                      .-+-..|++++|..+|.-+...++                 -|..-|..|..++-..+++++|+..|..-     .... 
T Consensus        45 y~~y~~Gk~~eA~~~F~~L~~~d~-----------------~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A-----~~l~-  101 (165)
T PRK15331         45 YEFYNQGRLDEAETFFRFLCIYDF-----------------YNPDYTMGLAAVCQLKKQFQKACDLYAVA-----FTLL-  101 (165)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCc-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHcc-
Confidence            334578999999999999998876                 66667888888899999999999999874     2222 


Q ss_pred             CCCchHHHHHHHHHHhcCCcccHHHHhhccCC
Q 036356          171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD  202 (462)
Q Consensus       171 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  202 (462)
                      .-|...+--...+|...|+.+.|...|+....
T Consensus       102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            23444455578889999999999999887664

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.33  E-value=1.7  Score=35.78  Aligned_cols=92  Identities=14%  Similarity=0.034  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHhcCCcchHHHHhccCCCCC------ccchHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHhHHHH
Q 036356          326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKD------VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH---GIEPRHQHYAR  396 (462)
Q Consensus       326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~  396 (462)
                      ..+..+.+-|++.|+.+.|.+.|.++.+..      ...+-.+|+...-.+++..+...+.+....   |-.++...--.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            455666666777777777777777665422      123445566666666776666666655543   22122222112


Q ss_pred             HHHH--HHhcCChHHHHHHHHhC
Q 036356          397 VVDL--LARAGYSNHAFKFIMNM  417 (462)
Q Consensus       397 li~~--~~~~g~~~~A~~~~~~m  417 (462)
                      ...+  +...|++.+|-+.|-+.
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHcc
Confidence            2222  23356666666666666

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=91.08  E-value=3.5  Score=32.36  Aligned_cols=89  Identities=11%  Similarity=0.104  Sum_probs=65.7

Q ss_pred             HHhhCCCCch--hHHHHHHHHHHhcCCcchHHHHhccCC---------CCCccchHHHHHHHHhcCC-hHHHHHHHHHHH
Q 036356          316 IGKSEYRNNV--IVNTVLIDMYAKCGSVDLAPMFFDRTL---------DKDVVMRSAMTVGYGLHGL-GEEGWVLFHHIR  383 (462)
Q Consensus       316 ~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~  383 (462)
                      |.+.+..++.  ...|+++.-....++......+++.+.         ..+..+|.+++.+.++..- --.+..+|.-|+
T Consensus        28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk  107 (145)
T PF13762_consen   28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK  107 (145)
T ss_pred             hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence            5556666664  446777777777777777777777664         2466788899999876665 445667888888


Q ss_pred             HCCCCCCHhHHHHHHHHHHhc
Q 036356          384 KHGIEPRHQHYARVVDLLARA  404 (462)
Q Consensus       384 ~~g~~p~~~~~~~li~~~~~~  404 (462)
                      +.+.+++..-|..++.++.+.
T Consensus       108 ~~~~~~t~~dy~~li~~~l~g  128 (145)
T PF13762_consen  108 KNDIEFTPSDYSCLIKAALRG  128 (145)
T ss_pred             HcCCCCCHHHHHHHHHHHHcC
Confidence            888889999999999988765

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.01  E-value=2.2  Score=40.89  Aligned_cols=132  Identities=13%  Similarity=0.031  Sum_probs=92.9

Q ss_pred             HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHH
Q 036356          285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV  364 (462)
Q Consensus       285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~  364 (462)
                      ....+.+++.+-+.|.++.|+++-.+            |+     .=.+...+.|+++.|.++.++..  +...|..|..
T Consensus       295 ~~~~~~i~~fL~~~G~~e~AL~~~~D------------~~-----~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~  355 (443)
T PF04053_consen  295 KDQGQSIARFLEKKGYPELALQFVTD------------PD-----HRFELALQLGNLDIALEIAKELD--DPEKWKQLGD  355 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHSS-------------HH-----HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHhhcCC------------hH-----HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHH
Confidence            45588899999999999999999876            21     12445568999999999988775  5669999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 036356          365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENML  444 (462)
Q Consensus       365 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~  444 (462)
                      ...+.|+++-|++.|.+..+         |..|+-.|...|+.+.-.++.+.....   .-++.-+.++...|+.++-+.
T Consensus       356 ~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~---~~~n~af~~~~~lgd~~~cv~  423 (443)
T PF04053_consen  356 EALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER---GDINIAFQAALLLGDVEECVD  423 (443)
T ss_dssp             HHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT---T-HHHHHHHHHHHT-HHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc---cCHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999988664         577777888888887777776655111   114455555555566665554


Q ss_pred             HHH
Q 036356          445 QTI  447 (462)
Q Consensus       445 ~~~  447 (462)
                      .+.
T Consensus       424 lL~  426 (443)
T PF04053_consen  424 LLI  426 (443)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=90.94  E-value=0.74  Score=27.61  Aligned_cols=30  Identities=20%  Similarity=0.266  Sum_probs=16.6

Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036356          359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR  390 (462)
Q Consensus       359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  390 (462)
                      |..+...|...|++++|.++|++..+  ..|+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~   33 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALA--LDPD   33 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence            44455555555666666666555555  4444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.82  E-value=2.4  Score=37.49  Aligned_cols=83  Identities=7%  Similarity=0.047  Sum_probs=70.5

Q ss_pred             chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHH
Q 036356          235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY  314 (462)
Q Consensus       235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  314 (462)
                      .++..++..+...|+.+.+...++.+....                 +-+...|..+|.+|.+.|+...|+..|+++-.-
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-----------------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-----------------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-----------------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            345667788888899999999999998864                 358899999999999999999999999987666


Q ss_pred             HHHhhCCCCchhHHHHHHHH
Q 036356          315 YIGKSEYRNNVIVNTVLIDM  334 (462)
Q Consensus       315 ~~~~~~~~p~~~~~~~li~~  334 (462)
                      .+.+.|+.|...+.......
T Consensus       217 ~~edlgi~P~~~~~~~y~~~  236 (280)
T COG3629         217 LAEELGIDPAPELRALYEEI  236 (280)
T ss_pred             hhhhcCCCccHHHHHHHHHH
Confidence            67889999999888777666

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.76  E-value=20  Score=36.24  Aligned_cols=155  Identities=12%  Similarity=0.021  Sum_probs=90.0

Q ss_pred             HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCC---CchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHh
Q 036356          141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN---NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL  217 (462)
Q Consensus       141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~  217 (462)
                      |+-+.+.+.+++|+..-+.       ..|..|   -..+....|+.+...|++++|-...-.|...+..-|...+..+..
T Consensus       363 i~Wll~~k~yeeAl~~~k~-------~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e  435 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKA-------SIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAE  435 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHh-------ccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcc
Confidence            5677888899999988876       344455   345677888999999999999999888888777777777766666


Q ss_pred             Cc--hHHHHHHHhhhc-CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhc-----CCCCHhHHH
Q 036356          218 HE--WSAFGSFDGLLS-NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR-----YQPNVTLWN  289 (462)
Q Consensus       218 ~~--~~a~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~  289 (462)
                      .+  .....+.-.-.. .+...|..++..+.. .+.   ..+++...+  .+++...-...+++..     ..-+...-.
T Consensus       436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~---~~F~e~i~~--Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e  509 (846)
T KOG2066|consen  436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV---KGFLELIKE--WPGHLYSVLTIISATEPQIKQNSESTALLE  509 (846)
T ss_pred             ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHH---HHHHHHHHh--CChhhhhhhHHHhhcchHHHhhccchhHHH
Confidence            55  222222111111 234556666665554 111   111221111  1222222222222211     111222233


Q ss_pred             HHHHHHHcCCChhHHHHHh
Q 036356          290 AMISGYAKNGYAEEAVKLF  308 (462)
Q Consensus       290 ~li~~~~~~~~~~~a~~~~  308 (462)
                      .|...|...++++.|++++
T Consensus       510 ~La~LYl~d~~Y~~Al~~y  528 (846)
T KOG2066|consen  510 VLAHLYLYDNKYEKALPIY  528 (846)
T ss_pred             HHHHHHHHccChHHHHHHH
Confidence            4777888889999998887

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.70  E-value=8  Score=33.22  Aligned_cols=27  Identities=15%  Similarity=0.126  Sum_probs=18.9

Q ss_pred             hHHHHHHHHHHcCCChhHHHHHhhHHH
Q 036356          286 TLWNAMISGYAKNGYAEEAVKLFPKWM  312 (462)
Q Consensus       286 ~~~~~li~~~~~~~~~~~a~~~~~~~~  312 (462)
                      ..|..-..+|...+++++|...+.+..
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~   58 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKAS   58 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            345555667888888888888776643

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=90.39  E-value=18  Score=35.16  Aligned_cols=189  Identities=14%  Similarity=0.024  Sum_probs=119.0

Q ss_pred             HHHHHHHhCc-hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHH
Q 036356          210 AMIVGYGLHE-WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW  288 (462)
Q Consensus       210 ~li~~~~~~~-~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  288 (462)
                      .-+......| .-...+|.-+...=.-.+..+++...=.|+-+.+++.+....+.+-.-.+..--          -...|
T Consensus       163 ~~~d~~~~sgv~~G~G~f~L~lSlLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L----------~LL~y  232 (468)
T PF10300_consen  163 KPIDEFFESGVYFGFGLFNLVLSLLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAAL----------VLLWY  232 (468)
T ss_pred             chhHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHH----------HHHHH
Confidence            3455555666 444555555555112345567777777789999999888876633211111111          11234


Q ss_pred             HHHHHHHHc----CCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHH-HHHHHhcCCcchHHHHhccCCC-------CCc
Q 036356          289 NAMISGYAK----NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL-IDMYAKCGSVDLAPMFFDRTLD-------KDV  356 (462)
Q Consensus       289 ~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~-------~~~  356 (462)
                      ..++..++.    ....+.|.+++..+.       ..-|+...|... .+.+...|++++|.+.|++...       -..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~a~~lL~~~~-------~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~  305 (468)
T PF10300_consen  233 HLVVPSFLGIDGEDVPLEEAEELLEEML-------KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHH  305 (468)
T ss_pred             HHHHHHHcCCcccCCCHHHHHHHHHHHH-------HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHH
Confidence            444444433    456788999988842       334776666544 3456779999999999997552       233


Q ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH--HHhcCCh-------HHHHHHHHhC
Q 036356          357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL--LARAGYS-------NHAFKFIMNM  417 (462)
Q Consensus       357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~-------~~A~~~~~~m  417 (462)
                      .++--+...+....++++|.+.|..+.+.  ......+-..+.+  +...|+.       ++|.++|++.
T Consensus       306 l~~~El~w~~~~~~~w~~A~~~f~~L~~~--s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  306 LCYFELAWCHMFQHDWEEAAEYFLRLLKE--SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHHHHHHHHHHHchHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            45556777788899999999999999984  3334444333333  3456777       8888888887

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=90.38  E-value=1.9  Score=33.67  Aligned_cols=69  Identities=14%  Similarity=0.108  Sum_probs=40.4

Q ss_pred             HHhcCCcchHHHHhccCCC--C----CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcC
Q 036356          335 YAKCGSVDLAPMFFDRTLD--K----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR--HQHYARVVDLLARAG  405 (462)
Q Consensus       335 ~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g  405 (462)
                      ..+.|++++|.+.|+.+..  |    .....-.|+.+|.+.+++++|...+++.++  +.|+  ..-|...+.+++.-.
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~gL~~~~   96 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMRGLSYYE   96 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHHHHHHHH
Confidence            3455677777777776653  1    112334566777777777777777777776  4454  234555555555443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.33  E-value=1  Score=41.41  Aligned_cols=76  Identities=14%  Similarity=0.036  Sum_probs=55.8

Q ss_pred             ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 036356          356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAW  433 (462)
Q Consensus       356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~  433 (462)
                      ..++..|.-+|.+.+++..|++...+.+.  +.|+ ....-.=..+|...|+++.|...|+++ .+.|+...-..=+..|
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l  334 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL  334 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            34567778888888888888888888877  4454 677777778888888888888888888 6677666554444333

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=89.92  E-value=12  Score=33.82  Aligned_cols=30  Identities=7%  Similarity=0.236  Sum_probs=20.5

Q ss_pred             hhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHH
Q 036356          150 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY  184 (462)
Q Consensus       150 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~  184 (462)
                      +++.+.+++.|     .+.|++-+..+|-+..-..
T Consensus        78 ~~~~~~~y~~L-----~~~gFk~~~y~~laA~~i~  107 (297)
T PF13170_consen   78 FKEVLDIYEKL-----KEAGFKRSEYLYLAALIIL  107 (297)
T ss_pred             HHHHHHHHHHH-----HHhccCccChHHHHHHHHH
Confidence            44456677776     8899999888776544433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=89.91  E-value=0.41  Score=26.89  Aligned_cols=25  Identities=20%  Similarity=0.442  Sum_probs=17.7

Q ss_pred             CCCC-HhHHHHHHHHHHhcCChHHHH
Q 036356          387 IEPR-HQHYARVVDLLARAGYSNHAF  411 (462)
Q Consensus       387 ~~p~-~~~~~~li~~~~~~g~~~~A~  411 (462)
                      +.|+ ...|.-+...|...|++++|+
T Consensus         8 ~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    8 LNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            5565 667777777777777777765

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=89.82  E-value=0.65  Score=26.41  Aligned_cols=23  Identities=9%  Similarity=0.187  Sum_probs=11.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHh
Q 036356          394 YARVVDLLARAGYSNHAFKFIMN  416 (462)
Q Consensus       394 ~~~li~~~~~~g~~~~A~~~~~~  416 (462)
                      |..|...|.+.|++++|++++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444555555555555555544

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=89.77  E-value=16  Score=34.99  Aligned_cols=160  Identities=13%  Similarity=0.070  Sum_probs=106.5

Q ss_pred             cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 036356           79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP  158 (462)
Q Consensus        79 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  158 (462)
                      ...|....-+++..++......-.+.+..+|...|-                  +-..|-.++..|..+ .-+.-..+|+
T Consensus        62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e------------------~kmal~el~q~y~en-~n~~l~~lWe  122 (711)
T COG1747          62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE------------------SKMALLELLQCYKEN-GNEQLYSLWE  122 (711)
T ss_pred             ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc------------------hHHHHHHHHHHHHhc-CchhhHHHHH
Confidence            455677788899999999999999999999998875                  677888889999888 5667777887


Q ss_pred             HhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCC------Cc---chHHHHHHHHHhCchHHHHHHHhh
Q 036356          159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK------DV---VMRSAMIVGYGLHEWSAFGSFDGL  229 (462)
Q Consensus       159 ~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~---~~~~~li~~~~~~~~~a~~~~~~m  229 (462)
                      ++     .+..+ .|++.-..|...|-+ ++...+..+|.+...+      +.   ..|.-++.-.....+..+.+...+
T Consensus       123 r~-----ve~df-nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~ki  195 (711)
T COG1747         123 RL-----VEYDF-NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKI  195 (711)
T ss_pred             HH-----HHhcc-hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            65     33332 344444556665555 7777777777665421      11   135444432222225555555555


Q ss_pred             hc-----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhC
Q 036356          230 LS-----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG  264 (462)
Q Consensus       230 ~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  264 (462)
                      ..     .-...+--+-.-|....++++|.+++..+.++.
T Consensus       196 qt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d  235 (711)
T COG1747         196 QTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD  235 (711)
T ss_pred             HHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence            44     223344445567888899999999999888775

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=89.52  E-value=10  Score=34.27  Aligned_cols=146  Identities=7%  Similarity=0.006  Sum_probs=82.2

Q ss_pred             ChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh--cC----CcchHHHHhccCCC-------CCccchHHHHHHH
Q 036356          300 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK--CG----SVDLAPMFFDRTLD-------KDVVMRSAMTVGY  366 (462)
Q Consensus       300 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~-------~~~~~~~~li~~~  366 (462)
                      +++++.+-+-. +.+.+.+.|++-+..+|-+..-....  ..    ...+|..+|+.|++       ++-.++..|+.. 
T Consensus        73 ~p~~~~~~~~~-~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~-  150 (297)
T PF13170_consen   73 DPEEAFKEVLD-IYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM-  150 (297)
T ss_pred             CHHHHHHHHHH-HHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc-
Confidence            36665554433 22337888998888777654333333  22    24578899999984       455566666554 


Q ss_pred             HhcCCh----HHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCC---hHHHHHHHHhC---CCCCCHHHHHHHHHHHHc
Q 036356          367 GLHGLG----EEGWVLFHHIRKHGIEPRHQ-HYARVVDLLARAGY---SNHAFKFIMNM---PIELRLSVRRALLSAWKI  435 (462)
Q Consensus       367 ~~~~~~----~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~---~~~A~~~~~~m---~~~p~~~~~~~l~~~~~~  435 (462)
                       ...+.    +.++.+++.+.+.|+..+.. -+.+-+-++.....   ..++.++++.+   ++++....|..+.--..-
T Consensus       151 -~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall  229 (297)
T PF13170_consen  151 -TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALL  229 (297)
T ss_pred             -ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhc
Confidence             33333    67788899999988888633 33333334443322   23556666666   666666666554433333


Q ss_pred             cCChHHHHHHHHh
Q 036356          436 PMQQWENMLQTIR  448 (462)
Q Consensus       436 ~~~~~~a~~~~~~  448 (462)
                      .+..++.+..+.+
T Consensus       230 ~~~~~~~~~~i~e  242 (297)
T PF13170_consen  230 EDPEEKIVEEIKE  242 (297)
T ss_pred             CCchHHHHHHHHH
Confidence            3333244444433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=89.43  E-value=3.8  Score=37.81  Aligned_cols=123  Identities=15%  Similarity=0.075  Sum_probs=86.3

Q ss_pred             HHHHcCCChhHHHHHhhHHHHHHHHhhCCCC---------chhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchH
Q 036356          293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN---------NVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRS  360 (462)
Q Consensus       293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~  360 (462)
                      ..|.+.|++..|..-|++.+...-...+..+         -..++..+.-+|.+.+++..|...-+...   .+|+...-
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy  295 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY  295 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence            3578889999998888775432211222222         23456667778889999999988877655   46777666


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhcCChHH-HHHHHHhC
Q 036356          361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL-ARAGYSNH-AFKFIMNM  417 (462)
Q Consensus       361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~-A~~~~~~m  417 (462)
                      .=..+|...|+++.|...|+++++  +.|+...-..=+..| .+..+..+ ..++|..|
T Consensus       296 RrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  296 RRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANM  352 (397)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            668899999999999999999999  999866655444444 34444433 46677777

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=89.09  E-value=5.5  Score=35.18  Aligned_cols=122  Identities=13%  Similarity=0.073  Sum_probs=90.6

Q ss_pred             ehhhhccCCChhhHHHHHHhh-----cCCCcchHHHHHHhhcC-cc-chhhHHHHHHHHHHh-cCCcchhHHHHHhhhcC
Q 036356           58 LDLYHLWSRTEWSAFGSFDGL-----LSNEENEYGTALDCSCD-LE-FLEQGKIVHGFMIKL-GLELESDLLISLTAVCR  129 (462)
Q Consensus        58 ~~~~~~~~~~~~~A~~~~~~m-----~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~m~~~-g~~~~~~~l~~~~~~~~  129 (462)
                      |..+-.++....+|+.+|+..     +-.|..+...+++.... .+ ....-.++.+.+... |-               
T Consensus       134 Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~---------------  198 (292)
T PF13929_consen  134 YWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSK---------------  198 (292)
T ss_pred             HHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhcccc---------------
Confidence            555555566677888888854     44577777778877764 22 344444555555533 22               


Q ss_pred             CCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhc
Q 036356          130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR  199 (462)
Q Consensus       130 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  199 (462)
                       .++..+-..+|..+++.+++..-.++++.-    +...+..-|...|..+|+.-...||..-..++.++
T Consensus       199 -~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~----~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~  263 (292)
T PF13929_consen  199 -SLTRNVIISILEILAESRDWNKLFQFWEQC----IPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD  263 (292)
T ss_pred             -CCChhHHHHHHHHHHhcccHHHHHHHHHHh----cccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence             588888999999999999999999999985    23335677899999999999999999988888875

>PRK11906 transcriptional regulator; Provisional

Probab=88.81  E-value=9.6  Score=36.19  Aligned_cols=157  Identities=15%  Similarity=0.094  Sum_probs=104.4

Q ss_pred             hHH--HHHHHHHHcCC-----ChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHh---------cCCcchHHHHh
Q 036356          286 TLW--NAMISGYAKNG-----YAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAK---------CGSVDLAPMFF  348 (462)
Q Consensus       286 ~~~--~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~  348 (462)
                      ..|  ..++.+.....     ..+.|+.+|.+.+    ..+...|+ ...|..+..++..         ..+..+|.++-
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~----~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A  327 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQ----NKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELL  327 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHh----hcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            456  55666655422     3567888888742    23456665 3444444333322         12234555665


Q ss_pred             ccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-
Q 036356          349 DRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-  422 (462)
Q Consensus       349 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-  422 (462)
                      +...+   .|......+..+....++++.|...|++...  +.|| ..+|........-.|+.++|.+.+++. ...|. 
T Consensus       328 ~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        328 DYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence            55543   4666666777777888889999999999998  8898 567777777778899999999999994 55564 


Q ss_pred             --HHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356          423 --LSVRRALLSAWKIPMQQWENMLQTIRG  449 (462)
Q Consensus       423 --~~~~~~l~~~~~~~~~~~~a~~~~~~~  449 (462)
                        .......+..|+..+ .++|+..+++.
T Consensus       406 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  433 (458)
T PRK11906        406 RKAVVIKECVDMYVPNP-LKNNIKLYYKE  433 (458)
T ss_pred             hHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence              445556666788775 46788777654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=88.68  E-value=5.7  Score=36.13  Aligned_cols=118  Identities=8%  Similarity=0.004  Sum_probs=56.5

Q ss_pred             HHHHHHhcCCcchHHHHhccCC-------CC--CccchHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHhHH---
Q 036356          331 LIDMYAKCGSVDLAPMFFDRTL-------DK--DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPRHQHY---  394 (462)
Q Consensus       331 li~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~---  394 (462)
                      +-.++.-.+.++++.+-|+...       +|  ....+..|-..|.+..|+++|.-+..+..+.    ++.--..-|   
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            3344444445555555555432       11  2335566666666666666666554443332    211111112   


Q ss_pred             --HHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356          395 --ARVVDLLARAGYSNHAFKFIMNM-------PIEL-RLSVRRALLSAWKIPMQQWENMLQTIR  448 (462)
Q Consensus       395 --~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~  448 (462)
                        -.+.-++-..|++-.|.+..++.       |-.| -......+...|...|+.+.|..-+++
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~  271 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ  271 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence              22333455566665555555553       2222 122334566666666666666554444

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=88.61  E-value=0.86  Score=25.90  Aligned_cols=27  Identities=11%  Similarity=0.037  Sum_probs=20.7

Q ss_pred             chHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356          358 MRSAMTVGYGLHGLGEEGWVLFHHIRK  384 (462)
Q Consensus       358 ~~~~li~~~~~~~~~~~a~~~~~~m~~  384 (462)
                      +|+.|...|.+.|++++|++++++...
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            367788888888999999888888543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.33  E-value=31  Score=34.88  Aligned_cols=309  Identities=12%  Similarity=-0.046  Sum_probs=172.7

Q ss_pred             hccCCChhhHHHHHHhhcCCC---cchHHHHHHhhcCccchhhHHHHHHHHHHh-cCCcchhHHHHHhhhcCCCCCeeeH
Q 036356           62 HLWSRTEWSAFGSFDGLLSNE---ENEYGTALDCSCDLEFLEQGKIVHGFMIKL-GLELESDLLISLTAVCRYQPNVTLR  137 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~l~~~~~~~~~~p~~~~~  137 (462)
                      +...+.+..|+.+-+.+.-|.   ...|.....-+.+..+.. -..+++.+.+. +.               +.-...+|
T Consensus       447 l~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~---------------~~~~~iSy  510 (829)
T KOG2280|consen  447 LVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSA---------------KLTPGISY  510 (829)
T ss_pred             HHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCcc-chHHHHHHHHHhcc---------------cCCCceeH
Confidence            777788899999988882222   556666666665553221 22233333221 11               01355778


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCC----CCchHHHHHHHHHHhcCCcccHHHHhhccCCC-CcchHHH--
Q 036356          138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR----NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSA--  210 (462)
Q Consensus       138 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~--  210 (462)
                      ..+...--..|+.+-|..+++.=     .+.+.+    .+..-+...+.-..+.||.+....++-.+.+. +...+..  
T Consensus       511 ~~iA~~Ay~~GR~~LA~kLle~E-----~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l  585 (829)
T KOG2280|consen  511 AAIARRAYQEGRFELARKLLELE-----PRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL  585 (829)
T ss_pred             HHHHHHHHhcCcHHHHHHHHhcC-----CCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888899999999998763     222211    12334555666677778888777776655421 1111111  


Q ss_pred             --------HHHHHHhCc--------------hHHHHHHH--hhhc-----CCcchHHHHHHhhcCccchhhhHHHHHHHH
Q 036356          211 --------MIVGYGLHE--------------WSAFGSFD--GLLS-----NEENEYGTALDCSCDLEFLEQGKIVHGFMI  261 (462)
Q Consensus       211 --------li~~~~~~~--------------~~a~~~~~--~m~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  261 (462)
                              +-.-|++..              ..++..|.  ....     +-........+++.+.....-..+..++-.
T Consensus       586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~  665 (829)
T KOG2280|consen  586 RNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQM  665 (829)
T ss_pred             HhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence                    111122211              11111111  1000     111112223333433333211111111110


Q ss_pred             HhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCc
Q 036356          262 KLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV  341 (462)
Q Consensus       262 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  341 (462)
                      +.     .....+|=..+|..-...+.+--+.-+...|+..+|.++-.+.         --||-..|-.=+.+++..+++
T Consensus       666 kL-----l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F---------kipdKr~~wLk~~aLa~~~kw  731 (829)
T KOG2280|consen  666 KL-----LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF---------KIPDKRLWWLKLTALADIKKW  731 (829)
T ss_pred             HH-----HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc---------CCcchhhHHHHHHHHHhhhhH
Confidence            00     0000000000112233344455566677789999998886652         247888888889999999999


Q ss_pred             chHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356          342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN  416 (462)
Q Consensus       342 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  416 (462)
                      ++-+++-+..+.  +.-|.-++.+|.+.|+.++|.+++-+...  .   .    -.+.+|.+.|++.+|.++--+
T Consensus       732 eeLekfAkskks--PIGy~PFVe~c~~~~n~~EA~KYiprv~~--l---~----ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  732 EELEKFAKSKKS--PIGYLPFVEACLKQGNKDEAKKYIPRVGG--L---Q----EKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HHHHHHHhccCC--CCCchhHHHHHHhcccHHHHhhhhhccCC--h---H----HHHHHHHHhccHHHHHHHHHH
Confidence            988888777655  67788999999999999999988876442  1   1    577888899999888776443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.31  E-value=4.6  Score=35.67  Aligned_cols=146  Identities=14%  Similarity=0.048  Sum_probs=90.3

Q ss_pred             HHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCC-CccchH---HHHHHH
Q 036356          291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRS---AMTVGY  366 (462)
Q Consensus       291 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~---~li~~~  366 (462)
                      -.......|+..+|..+|...+.     ... -+...--.+..+|...|+.+.|..++..+... ...-|.   .=|..+
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~-----~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll  213 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQ-----AAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL  213 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHH-----hCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence            34567788888888888888532     111 12344556778888889999999999888732 111222   223444


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHccCChHH
Q 036356          367 GLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM----PIELRLSVRRALLSAWKIPMQQWE  441 (462)
Q Consensus       367 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~~~~~~~~~  441 (462)
                      .+.....+...+-.+.-.   .| |...-..+...+...|+.++|.+.+=.+    .-.-|...-..|+..+.--|..+.
T Consensus       214 ~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp  290 (304)
T COG3118         214 EQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP  290 (304)
T ss_pred             HHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence            455555544444444443   46 4666667778888888888888755444    123455666777777777775554


Q ss_pred             HHHH
Q 036356          442 NMLQ  445 (462)
Q Consensus       442 a~~~  445 (462)
                      +...
T Consensus       291 ~~~~  294 (304)
T COG3118         291 LVLA  294 (304)
T ss_pred             HHHH
Confidence            4433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=88.27  E-value=0.75  Score=27.57  Aligned_cols=31  Identities=6%  Similarity=-0.055  Sum_probs=27.4

Q ss_pred             chHHHHHHhhcCccchhhHHHHHHHHHHhcC
Q 036356           84 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGL  114 (462)
Q Consensus        84 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~  114 (462)
                      .++..+...+.+.|++++|.++|++..+..+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P   32 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDP   32 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            3577888999999999999999999999865

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=88.26  E-value=22  Score=33.13  Aligned_cols=82  Identities=11%  Similarity=-0.012  Sum_probs=55.0

Q ss_pred             HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHh---CCChhHHHHHHHHhhh
Q 036356           86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAK---NGYAEEAVKLFPKWMD  162 (462)
Q Consensus        86 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~  162 (462)
                      ...++-+|....+++...++++.+......  .           ..-+..+--...-++.+   .|+.++|++++...  
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~--~-----------~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~--  208 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTC--D-----------VANQHNIKFQYAFALNRRNKPGDREKALQILLPV--  208 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCcc--c-----------hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHH--
Confidence            344455688888999999999999875320  0           01112222234455666   89999999999885  


Q ss_pred             hhhhhcCCCCCchHHHHHHHHHH
Q 036356          163 YYIGKSEYRNNVIVNTVLIDMYA  185 (462)
Q Consensus       163 ~~~~~~~~~~~~~~~~~li~~~~  185 (462)
                         ....-.++..+|..+.+.|-
T Consensus       209 ---l~~~~~~~~d~~gL~GRIyK  228 (374)
T PF13281_consen  209 ---LESDENPDPDTLGLLGRIYK  228 (374)
T ss_pred             ---HhccCCCChHHHHHHHHHHH
Confidence               45666778888887777774

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=87.91  E-value=13  Score=30.12  Aligned_cols=91  Identities=9%  Similarity=0.047  Sum_probs=54.6

Q ss_pred             hhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc----hHHHHHHHhhhcCCcchHHHHH
Q 036356          166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE----WSAFGSFDGLLSNEENEYGTAL  241 (462)
Q Consensus       166 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~----~~a~~~~~~m~~~~~~~~~~ll  241 (462)
                      ...+++|+...|..+++.+.+.|++.....++.--.-+|.......+-.+....    .-|++.+.++.    ..+..++
T Consensus        21 ~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~~ii   96 (167)
T PF07035_consen   21 NQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYEEII   96 (167)
T ss_pred             HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHHHHH
Confidence            567788888888888888888888877777766544344443333333332222    44555555442    2344555


Q ss_pred             HhhcCccchhhhHHHHHHH
Q 036356          242 DCSCDLEFLEQGKIVHGFM  260 (462)
Q Consensus       242 ~~~~~~~~~~~a~~~~~~~  260 (462)
                      +.+...|++-+|.++....
T Consensus        97 evLL~~g~vl~ALr~ar~~  115 (167)
T PF07035_consen   97 EVLLSKGQVLEALRYARQY  115 (167)
T ss_pred             HHHHhCCCHHHHHHHHHHc
Confidence            5666667777776666543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=87.64  E-value=1.3  Score=42.92  Aligned_cols=109  Identities=13%  Similarity=-0.005  Sum_probs=79.8

Q ss_pred             CCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh----hccCCChhhHHHHHHhh-------cCCCcchHHHHHHh
Q 036356           24 PSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY----HLWSRTEWSAFGSFDGL-------LSNEENEYGTALDC   92 (462)
Q Consensus        24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~m-------~~~~~~~~~~ll~~   92 (462)
                      .+.+.|.++++.+.+.-            |+...|...    +...|+.++|++.|+..       .+.....+--+.-+
T Consensus       247 ~~~~~a~~lL~~~~~~y------------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~  314 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRY------------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWC  314 (468)
T ss_pred             CCHHHHHHHHHHHHHhC------------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHH
Confidence            34566777777776653            677777655    88899999999999976       33344456667777


Q ss_pred             hcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHH-HHhCCCh-------hHHHHHHHHhh
Q 036356           93 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISG-YAKNGYA-------EEAVKLFPKWM  161 (462)
Q Consensus        93 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-------~~a~~~~~~m~  161 (462)
                      +.-..++++|...|..+.+..-                 -+..+|.-+..+ +...|+.       ++|.++|.+..
T Consensus       315 ~~~~~~w~~A~~~f~~L~~~s~-----------------WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  315 HMFQHDWEEAAEYFLRLLKESK-----------------WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHchHHHHHHHHHHHHhccc-----------------cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            8889999999999999998653                 455555544444 5567777       88888888863

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=87.28  E-value=19  Score=31.30  Aligned_cols=59  Identities=12%  Similarity=-0.097  Sum_probs=46.7

Q ss_pred             eeehhh--hccCCChhhHHHHHHhh---cCC---CcchHHHHHHhhcCccchhhHHHHHHHHHHhcC
Q 036356           56 VFLDLY--HLWSRTEWSAFGSFDGL---LSN---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL  114 (462)
Q Consensus        56 ~~~~~~--~~~~~~~~~A~~~~~~m---~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~  114 (462)
                      ..|+..  -.+.|++++|.+.|+.+   .+-   ...+--.++.++-+.++++.|...+++..+.-+
T Consensus        36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP  102 (254)
T COG4105          36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP  102 (254)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence            345555  78899999999999999   222   344666777888899999999999999887754

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=87.25  E-value=6.5  Score=30.09  Aligned_cols=83  Identities=18%  Similarity=0.130  Sum_probs=59.2

Q ss_pred             HHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH---hHHHHHHHHHHhcCC
Q 036356          334 MYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPRH---QHYARVVDLLARAGY  406 (462)
Q Consensus       334 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~---~~~~~li~~~~~~g~  406 (462)
                      +++..|+++.|++.|....   ......||.=..++--.|+.++|++=+++..+. |-+ +.   ..|..=...|-..|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence            5677888999988888765   346777888888888888888888888887775 322 22   223333335666788


Q ss_pred             hHHHHHHHHhC
Q 036356          407 SNHAFKFIMNM  417 (462)
Q Consensus       407 ~~~A~~~~~~m  417 (462)
                      .+.|..=|+..
T Consensus       131 dd~AR~DFe~A  141 (175)
T KOG4555|consen  131 DDAARADFEAA  141 (175)
T ss_pred             hHHHHHhHHHH
Confidence            88888777766

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.15  E-value=12  Score=30.28  Aligned_cols=118  Identities=14%  Similarity=0.126  Sum_probs=74.1

Q ss_pred             HHcCCChhHHHHHhhHHHHHHHHhhCCCCchhH-HHHHHHHHHhcCCcchHHHHhccCCCC--CccchH---HH--HHHH
Q 036356          295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV-NTVLIDMYAKCGSVDLAPMFFDRTLDK--DVVMRS---AM--TVGY  366 (462)
Q Consensus       295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~---~l--i~~~  366 (462)
                      +.+.+..++|+.-|..     +.+.|...-+.. -.-........|+...|...|+++-..  -+....   .|  ...+
T Consensus        68 lA~~~k~d~Alaaf~~-----lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL  142 (221)
T COG4649          68 LAQENKTDDALAAFTD-----LEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL  142 (221)
T ss_pred             HHHcCCchHHHHHHHH-----HHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence            4567778888888887     666665432221 111223456678888888888877531  111111   11  2234


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          367 GLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       367 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      ..+|.++....-.+-+...+-+.....-..|.-+-.+.|++.+|.++|..+
T Consensus       143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi  193 (221)
T COG4649         143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI  193 (221)
T ss_pred             hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence            567778877777777666555445556667777777888888888888876

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.03  E-value=36  Score=34.93  Aligned_cols=174  Identities=16%  Similarity=0.086  Sum_probs=104.1

Q ss_pred             hhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCC
Q 036356          243 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR  322 (462)
Q Consensus       243 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  322 (462)
                      .+.+.|++++|...|-+-+  |..               .|     ..+|.-|....++.+-..+++.     +.+.|+.
T Consensus       377 ~Ly~Kgdf~~A~~qYI~tI--~~l---------------e~-----s~Vi~kfLdaq~IknLt~YLe~-----L~~~gla  429 (933)
T KOG2114|consen  377 YLYGKGDFDEATDQYIETI--GFL---------------EP-----SEVIKKFLDAQRIKNLTSYLEA-----LHKKGLA  429 (933)
T ss_pred             HHHhcCCHHHHHHHHHHHc--ccC---------------Ch-----HHHHHHhcCHHHHHHHHHHHHH-----HHHcccc
Confidence            3457888888877665443  221               12     2345556666666666666666     5566764


Q ss_pred             CchhHHHHHHHHHHhcCCcchHHHHhccCCCCCc-cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036356          323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV-VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL  401 (462)
Q Consensus       323 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  401 (462)
                       +...-..|+.+|.+.++.++-.+..+...+-.. .-....+..+.+.+-.++|..+-.+...     .......   .+
T Consensus       430 -~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---ll  500 (933)
T KOG2114|consen  430 -NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LL  500 (933)
T ss_pred             -cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HH
Confidence             344456789999999999988888876652111 1234566777777777777665544332     2222233   34


Q ss_pred             HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcC
Q 036356          402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEG  453 (462)
Q Consensus       402 ~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  453 (462)
                      -..|++++|++.++.+++.--..+.+...+.+... ..++....+.+.....
T Consensus       501 e~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~  551 (933)
T KOG2114|consen  501 EDLHNYEEALRYISSLPISELLRTLNKYGKILLEH-DPEETMKILIELITEL  551 (933)
T ss_pred             HHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhc
Confidence            56789999999999996443344445555555544 3344554454444333

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.29  E-value=16  Score=29.60  Aligned_cols=131  Identities=15%  Similarity=-0.003  Sum_probs=94.2

Q ss_pred             hhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHH-----HHHhcCChHHHHHHHHHHHHCCCCCCHh-HHHHHH
Q 036356          325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV-----GYGLHGLGEEGWVLFHHIRKHGIEPRHQ-HYARVV  398 (462)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li  398 (462)
                      ...|..-++ +++.+..++|+.-|..+.+.+...|-.|..     .....|+...|...|++.-...-.|-.. -...|=
T Consensus        59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr  137 (221)
T COG4649          59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR  137 (221)
T ss_pred             hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence            334444333 466788999999999999888888876643     4667899999999999999865555533 333333


Q ss_pred             H--HHHhcCChHHHHHHHHhC--CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhhcCCCC
Q 036356          399 D--LLARAGYSNHAFKFIMNM--PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKT  456 (462)
Q Consensus       399 ~--~~~~~g~~~~A~~~~~~m--~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p  456 (462)
                      .  .+...|-+++...-++-+  .-.| ....-.+|.-+-.+.|++..|..+|.+.......|
T Consensus       138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap  200 (221)
T COG4649         138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP  200 (221)
T ss_pred             HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence            3  345789999999888888  2222 34455788888999999999998887765544333

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=86.22  E-value=13  Score=28.55  Aligned_cols=56  Identities=9%  Similarity=0.115  Sum_probs=32.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .-+..+...|+-+.-.++..++.+ +-.|++...-.+..+|.+.|+..++.+++.+.
T Consensus        91 ~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A  146 (161)
T PF09205_consen   91 LALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEA  146 (161)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            345666667776776677776654 33466666666777777777777777666654

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.21  E-value=1.2  Score=24.62  Aligned_cols=31  Identities=16%  Similarity=0.174  Sum_probs=20.6

Q ss_pred             chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036356          358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR  390 (462)
Q Consensus       358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  390 (462)
                      +|..+...|...|++++|+..|++..+  +.|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence            456667777777777777777777776  4443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.21  E-value=43  Score=34.38  Aligned_cols=53  Identities=6%  Similarity=0.103  Sum_probs=35.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356          360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN  416 (462)
Q Consensus       360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  416 (462)
                      --++..+.+..+.+.+..+.+..-+.    +...|..++.-|++.+..+.-.+...+
T Consensus       709 ~dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~  761 (933)
T KOG2114|consen  709 QDLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYK  761 (933)
T ss_pred             HHHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence            34566677777777777777666542    677888888888888765555444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.17  E-value=11  Score=33.03  Aligned_cols=90  Identities=17%  Similarity=0.198  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHhcCCcchHHHHhccCCC--CC----ccchHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-HhHHHHHH
Q 036356          327 VNTVLIDMYAKCGSVDLAPMFFDRTLD--KD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPR-HQHYARVV  398 (462)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-~~~~~~li  398 (462)
                      .|+.-+..| +.|++..|...|....+  |+    ...+--|..++...|+++.|..+|..+.+. +-.|. ...+--|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            466555443 45667777777766553  21    123334667777777777777777777765 33333 35666666


Q ss_pred             HHHHhcCChHHHHHHHHhC
Q 036356          399 DLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       399 ~~~~~~g~~~~A~~~~~~m  417 (462)
                      ....+.|+.++|...++++
T Consensus       223 ~~~~~l~~~d~A~atl~qv  241 (262)
T COG1729         223 VSLGRLGNTDEACATLQQV  241 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHH
Confidence            6777777777777777776

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=86.03  E-value=14  Score=35.38  Aligned_cols=19  Identities=11%  Similarity=0.150  Sum_probs=12.0

Q ss_pred             CccchhhhHHHHHHHHHhC
Q 036356          246 DLEFLEQGKIVHGFMIKLG  264 (462)
Q Consensus       246 ~~~~~~~a~~~~~~~~~~~  264 (462)
                      ...-+.++++++++..+.|
T Consensus       212 eA~Ti~Eae~l~rqAvkAg  230 (539)
T PF04184_consen  212 EASTIVEAEELLRQAVKAG  230 (539)
T ss_pred             cccCHHHHHHHHHHHHHHH
Confidence            3445677777777766654

The molecular function of this protein is uncertain.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=85.85  E-value=20  Score=30.12  Aligned_cols=49  Identities=18%  Similarity=0.205  Sum_probs=24.4

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          367 GLHGLGEEGWVLFHHIRKHGIEPR--HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       367 ~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      ...++.+.+...+.+...  ..|+  ...+..+...+...++++.|...+...
T Consensus       178 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  228 (291)
T COG0457         178 EALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKA  228 (291)
T ss_pred             HHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            344455555555555554  2222  344445555555555555555555554

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=85.42  E-value=3  Score=28.60  Aligned_cols=46  Identities=4%  Similarity=0.033  Sum_probs=28.8

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHH
Q 036356          368 LHGLGEEGWVLFHHIRKHGIEPR--HQHYARVVDLLARAGYSNHAFKF  413 (462)
Q Consensus       368 ~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~  413 (462)
                      ...+.++|+..|....+.-..|.  ..++..++.+|+..|++++++++
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777777777666533332  45666777777777777776653

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.83  E-value=13  Score=32.46  Aligned_cols=91  Identities=12%  Similarity=0.034  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhCc-hHHHHHHHhhhc--CC----cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhc
Q 036356          208 RSAMIVGYGLHE-WSAFGSFDGLLS--NE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR  280 (462)
Q Consensus       208 ~~~li~~~~~~~-~~a~~~~~~m~~--~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  280 (462)
                      |+.-+..+-... ..|...|....+  |+    ...+-.|..++...|++++|..+|..+.+.--.              
T Consensus       145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~--------------  210 (262)
T COG1729         145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK--------------  210 (262)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC--------------
Confidence            555555554444 555555555555  32    334667888889999999999999888875432              


Q ss_pred             CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHH
Q 036356          281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM  312 (462)
Q Consensus       281 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  312 (462)
                      .+.-....-.+.....+.|+.++|..+|.+.+
T Consensus       211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~  242 (262)
T COG1729         211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVI  242 (262)
T ss_pred             CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            11233566777778888999999999998843

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=84.74  E-value=11  Score=31.37  Aligned_cols=79  Identities=6%  Similarity=0.035  Sum_probs=47.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC------CCCCCHHHHHHHHHHHHcc
Q 036356          363 TVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM------PIELRLSVRRALLSAWKIP  436 (462)
Q Consensus       363 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~p~~~~~~~l~~~~~~~  436 (462)
                      -....+.|+ +.|.+.|-.+...+.--++.....|..-|. ..+.++|+.++-+.      +-.+|+..+.+|...+.+.
T Consensus       114 Yy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~  191 (203)
T PF11207_consen  114 YYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL  191 (203)
T ss_pred             HHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence            334445555 566666666666555444444444443333 56677777766655      2256677777777777777


Q ss_pred             CChHHHH
Q 036356          437 MQQWENM  443 (462)
Q Consensus       437 ~~~~~a~  443 (462)
                      |+.+.|-
T Consensus       192 ~~~e~AY  198 (203)
T PF11207_consen  192 KNYEQAY  198 (203)
T ss_pred             cchhhhh
Confidence            7776664

>PRK09687 putative lyase; Provisional

Probab=84.71  E-value=29  Score=31.08  Aligned_cols=49  Identities=20%  Similarity=0.090  Sum_probs=22.3

Q ss_pred             CCCCcchHHHHHHHHHhCc-hHHHHHHHhhhc-CCcchHHHHHHhhcCccc
Q 036356          201 LDKDVVMRSAMIVGYGLHE-WSAFGSFDGLLS-NEENEYGTALDCSCDLEF  249 (462)
Q Consensus       201 ~~~~~~~~~~li~~~~~~~-~~a~~~~~~m~~-~~~~~~~~ll~~~~~~~~  249 (462)
                      .++|.......+.++...| .++...+..+.. +|...-...+.++.+.|+
T Consensus        33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~   83 (280)
T PRK09687         33 DDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGM   83 (280)
T ss_pred             hCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            3344444444444444444 444444444433 444444444444444444

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=84.59  E-value=19  Score=31.98  Aligned_cols=60  Identities=10%  Similarity=-0.022  Sum_probs=36.0

Q ss_pred             hCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC-----CCCccchHHHHHHHHhcCChHHHHHH
Q 036356          319 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL-----DKDVVMRSAMTVGYGLHGLGEEGWVL  378 (462)
Q Consensus       319 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~  378 (462)
                      .+-.++..+...+++.+++.+++.+-.++|+...     ..|...|..+|+.....|+..-..++
T Consensus       196 ~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki  260 (292)
T PF13929_consen  196 FSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI  260 (292)
T ss_pred             cccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence            3445556666666666666666666666666543     23666666666666666665443333

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=84.58  E-value=40  Score=32.56  Aligned_cols=176  Identities=14%  Similarity=0.138  Sum_probs=110.1

Q ss_pred             CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHH
Q 036356          232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW  311 (462)
Q Consensus       232 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  311 (462)
                      .|.....+++..+...-.+.-.+.+..+|..-|                  -+-..|..++..|..+ ..+.-..++++ 
T Consensus        64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~------------------e~kmal~el~q~y~en-~n~~l~~lWer-  123 (711)
T COG1747          64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG------------------ESKMALLELLQCYKEN-GNEQLYSLWER-  123 (711)
T ss_pred             ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc------------------chHHHHHHHHHHHHhc-CchhhHHHHHH-
Confidence            455566677777777777777888888887765                  5667777888888877 56666777776 


Q ss_pred             HHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCC------Cc---cchHHHHHHHHhcCChHHHHHHHHHH
Q 036356          312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK------DV---VMRSAMTVGYGLHGLGEEGWVLFHHI  382 (462)
Q Consensus       312 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~~~~~~a~~~~~~m  382 (462)
                          +.+..+ -|++.-.-|..-|.+ ++.+.+...|.+....      +.   ..|..|+..  -..+.+..+.+..+.
T Consensus       124 ----~ve~df-nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~ki  195 (711)
T COG1747         124 ----LVEYDF-NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKI  195 (711)
T ss_pred             ----HHHhcc-hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHH
Confidence                333333 233333444444544 7777777777765421      11   134444432  134567777777777


Q ss_pred             HHC-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHc
Q 036356          383 RKH-GIEPRHQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKI  435 (462)
Q Consensus       383 ~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~  435 (462)
                      ... |..--...+.-+-.-|....++++|++++...  .-..|.-.-..++..+..
T Consensus       196 qt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd  251 (711)
T COG1747         196 QTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD  251 (711)
T ss_pred             HHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence            665 55555666777777888888999999988866  223344444455554444

>PRK09687 putative lyase; Provisional

Probab=84.15  E-value=31  Score=30.92  Aligned_cols=136  Identities=13%  Similarity=0.013  Sum_probs=75.6

Q ss_pred             CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCC-cchHHH-HhccCCCCCccchH
Q 036356          283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS-VDLAPM-FFDRTLDKDVVMRS  360 (462)
Q Consensus       283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~-~~~~~~~~~~~~~~  360 (462)
                      ++..+-...+.++++.++ +++...+...+     +   .++..+-...+.++++.+. ...+.. +...+.++|...-.
T Consensus       140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L-----~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~  210 (280)
T PRK09687        140 KSTNVRFAVAFALSVIND-EAAIPLLINLL-----K---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRI  210 (280)
T ss_pred             CCHHHHHHHHHHHhccCC-HHHHHHHHHHh-----c---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHH
Confidence            455555566666666665 34555554421     1   2334444455555655431 223333 33334456777777


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 036356          361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWK  434 (462)
Q Consensus       361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~  434 (462)
                      .-+.++.+.++ ..|...+-+..+.+.     .....+.++...|.. +|...+..+ .-.||..+-...+.+|.
T Consensus       211 ~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        211 EAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             HHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence            77777877777 456655555555322     234566777777775 566666666 43567666665555553

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=84.12  E-value=0.97  Score=25.34  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=19.8

Q ss_pred             CCeeeHHHHHHHHHhCCChhHHHH
Q 036356          132 PNVTLRNAMISGYAKNGYAEEAVK  155 (462)
Q Consensus       132 p~~~~~~~li~~~~~~g~~~~a~~  155 (462)
                      -|...|+.+...|...|++++|++
T Consensus        11 ~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen   11 NNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             CCHHHHHHHHHHHHHCcCHHhhcC
Confidence            577888889999999999888863

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=83.63  E-value=10  Score=29.74  Aligned_cols=53  Identities=13%  Similarity=-0.030  Sum_probs=37.9

Q ss_pred             hccCCChhhHHHHHHhh---c---CCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcC
Q 036356           62 HLWSRTEWSAFGSFDGL---L---SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL  114 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~  114 (462)
                      ..+.|++.+|++.|+.+   .   +-...+--.++.++-+.++++.|...+++.++..+
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP   78 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP   78 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            66778888888888887   2   22234566677777788888888888888877765

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=83.60  E-value=7.9  Score=29.66  Aligned_cols=51  Identities=18%  Similarity=0.142  Sum_probs=29.0

Q ss_pred             hcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHH
Q 036356          244 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW  311 (462)
Q Consensus       244 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  311 (462)
                      ++..|+++.|++.|.+.+..-                 +-....||.-..++.-.|+.++|++-+.+.
T Consensus        53 laE~g~Ld~AlE~F~qal~l~-----------------P~raSayNNRAQa~RLq~~~e~ALdDLn~A  103 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLA-----------------PERASAYNNRAQALRLQGDDEEALDDLNKA  103 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhc-----------------ccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence            345566666666666555431                 234555666666666666666666666553

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=83.53  E-value=4  Score=29.26  Aligned_cols=44  Identities=11%  Similarity=0.074  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356          101 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus       101 ~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      ++.+-++.+...++                .|++.+..+-+.+|.+-+++..|+++|+..
T Consensus        25 e~rr~mN~l~~~Dl----------------VP~P~ii~aaLrAcRRvND~alAVR~lE~v   68 (103)
T cd00923          25 ELRRGLNNLFGYDL----------------VPEPKVIEAALRACRRVNDFALAVRILEAI   68 (103)
T ss_pred             HHHHHHHHHhcccc----------------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            44555566666666                777777777888888888888888888764

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.02  E-value=32  Score=30.17  Aligned_cols=136  Identities=12%  Similarity=0.072  Sum_probs=84.8

Q ss_pred             CCCceeehhh----hccCCChhhHHHHHHhh--cCCC-----cchHHHHHHhhcCccchhhHHHHHHHHHH---hcCCcc
Q 036356           52 DRTIVFLDLY----HLWSRTEWSAFGSFDGL--LSNE-----ENEYGTALDCSCDLEFLEQGKIVHGFMIK---LGLELE  117 (462)
Q Consensus        52 ~~~~~~~~~~----~~~~~~~~~A~~~~~~m--~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~g~~~~  117 (462)
                      +||+-.=|..    -.+...+++|+.-|++.  ..+.     -.+..-+++..-+.+++++....+.+|..   ..+  .
T Consensus        23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV--T  100 (440)
T KOG1464|consen   23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV--T  100 (440)
T ss_pred             CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH--h
Confidence            5777655554    44555899999999998  3332     22445568888899999999988888863   222  0


Q ss_pred             hhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHh
Q 036356          118 SDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF  197 (462)
Q Consensus       118 ~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  197 (462)
                      .            .-+..+.|++++--....+.+-...+|+.-....-...+-..-..|-+.|-..|...|++.+..+++
T Consensus       101 r------------NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIl  168 (440)
T KOG1464|consen  101 R------------NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKIL  168 (440)
T ss_pred             c------------cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHH
Confidence            0            1345567888877777777776666666542111111111222234445666777777887777777


Q ss_pred             hccC
Q 036356          198 DRTL  201 (462)
Q Consensus       198 ~~m~  201 (462)
                      .++.
T Consensus       169 kqLh  172 (440)
T KOG1464|consen  169 KQLH  172 (440)
T ss_pred             HHHH
Confidence            7664

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=83.02  E-value=10  Score=31.24  Aligned_cols=61  Identities=13%  Similarity=0.000  Sum_probs=41.6

Q ss_pred             hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhH
Q 036356          236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK  310 (462)
Q Consensus       236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  310 (462)
                      .+..+...|++.|+.+.|.+.|..+.+....+.              .-...+-.+|......+++..+.....+
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~--------------~~id~~l~~irv~i~~~d~~~v~~~i~k   98 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPG--------------HKIDMCLNVIRVAIFFGDWSHVEKYIEK   98 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH--------------HHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            455667777888888888888888776554321              2344566677777777777777777655

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=82.74  E-value=35  Score=30.52  Aligned_cols=151  Identities=13%  Similarity=0.040  Sum_probs=89.4

Q ss_pred             ccCCChhhHHHHHHhh---c---CCCcc------hHHHHHHhhcCccchhhHHHHHHHHHHh----cCCcchhHHHHHhh
Q 036356           63 LWSRTEWSAFGSFDGL---L---SNEEN------EYGTALDCSCDLEFLEQGKIVHGFMIKL----GLELESDLLISLTA  126 (462)
Q Consensus        63 ~~~~~~~~A~~~~~~m---~---~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~l~~~~~  126 (462)
                      .+.|+.+.|..++.+.   .   .|+..      .|+.-...+.+..+++.|...+++..+.    +- ...        
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~--------   74 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDK--------   74 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccc--------
Confidence            3578889999999888   2   23221      2444444444433888887777776543    10 000        


Q ss_pred             hcCCCCCe-----eeHHHHHHHHHhCCChhH---HHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhh
Q 036356          127 VCRYQPNV-----TLRNAMISGYAKNGYAEE---AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD  198 (462)
Q Consensus       127 ~~~~~p~~-----~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  198 (462)
                         ..|+.     .+...++.+|...+..+.   |.++++.+      +....-...++-.-++.+.+.++.+.+.+.+.
T Consensus        75 ---~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l------~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~  145 (278)
T PF08631_consen   75 ---LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLL------ESEYGNKPEVFLLKLEILLKSFDEEEYEEILM  145 (278)
T ss_pred             ---cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH------HHhCCCCcHHHHHHHHHHhccCChhHHHHHHH
Confidence               02332     356677888888877655   44455554      22333335566567777777899999999999


Q ss_pred             ccCCC---CcchHHHHHHHH---HhCc-hHHHHHHHhhhc
Q 036356          199 RTLDK---DVVMRSAMIVGY---GLHE-WSAFGSFDGLLS  231 (462)
Q Consensus       199 ~m~~~---~~~~~~~li~~~---~~~~-~~a~~~~~~m~~  231 (462)
                      +|...   ....+..++..+   .... ..+...+..+..
T Consensus       146 ~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~  185 (278)
T PF08631_consen  146 RMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLL  185 (278)
T ss_pred             HHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence            88742   334555555544   4444 566666655554

It is also involved in sporulation [].

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.47  E-value=2.2  Score=23.40  Aligned_cols=26  Identities=19%  Similarity=0.068  Sum_probs=16.1

Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356          359 RSAMTVGYGLHGLGEEGWVLFHHIRK  384 (462)
Q Consensus       359 ~~~li~~~~~~~~~~~a~~~~~~m~~  384 (462)
                      |..+...|...|++++|.+.|++..+
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            44555666666777777776666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.40  E-value=4  Score=36.28  Aligned_cols=97  Identities=10%  Similarity=0.093  Sum_probs=68.0

Q ss_pred             hCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-C------CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036356          319 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-K------DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH  391 (462)
Q Consensus       319 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  391 (462)
                      .|......+...++..-....+++.+...+-++.. |      +...+ ..++.+ -.-++++++.++..=..-|+.||.
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dq  135 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ  135 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccch
Confidence            45555566666666666667778888877766652 2      21111 223333 344677888888877777999999


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          392 QHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       392 ~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .++..+++.+.+.+++.+|.++.-.|
T Consensus       136 f~~c~l~D~flk~~n~~~aa~vvt~~  161 (418)
T KOG4570|consen  136 FTFCLLMDSFLKKENYKDAASVVTEV  161 (418)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHH
Confidence            99999999999999999998887776

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=82.38  E-value=19  Score=34.50  Aligned_cols=79  Identities=10%  Similarity=-0.016  Sum_probs=56.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCH--HHHHHHHHHHH
Q 036356          360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIE-PRHQHYARVVDLLARAGYSNHAFKFIMNMP-I-ELRL--SVRRALLSAWK  434 (462)
Q Consensus       360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~--~~~~~l~~~~~  434 (462)
                      ..|..++-+.|+.++|.+.+++|.+..-. -+......|++++...+.+.++..++.+.. + .|..  ..|+..+-...
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR  342 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR  342 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence            45777778889999999999999873211 124577889999999999999999999882 2 2433  35665544444


Q ss_pred             ccCC
Q 036356          435 IPMQ  438 (462)
Q Consensus       435 ~~~~  438 (462)
                      ..++
T Consensus       343 av~d  346 (539)
T PF04184_consen  343 AVGD  346 (539)
T ss_pred             hhcc
Confidence            4443

The molecular function of this protein is uncertain.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.15  E-value=4.3  Score=35.70  Aligned_cols=74  Identities=9%  Similarity=0.090  Sum_probs=41.2

Q ss_pred             HHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhh
Q 036356           87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG  166 (462)
Q Consensus        87 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  166 (462)
                      +.+-+.|..+|.+.+|.++.+...+...                 .+...|-.|+..++..|+--+|.+-++.+.+-...
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldp-----------------L~e~~nk~lm~~la~~gD~is~~khyerya~vlea  345 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDP-----------------LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEA  345 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcCh-----------------hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence            3334455566666666666666655543                 55556666666666666666666555555433334


Q ss_pred             hcCCCCCchHH
Q 036356          167 KSEYRNNVIVN  177 (462)
Q Consensus       167 ~~~~~~~~~~~  177 (462)
                      +.|+..|..++
T Consensus       346 elgi~vddsie  356 (361)
T COG3947         346 ELGIDVDDSIE  356 (361)
T ss_pred             HhCCCcchhHH
Confidence            45555544443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.12  E-value=1.5  Score=24.24  Aligned_cols=25  Identities=12%  Similarity=0.194  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          393 HYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       393 ~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +|..+...|...|++++|+..+++.
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~a   27 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRA   27 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHH
Confidence            4555555666666666666655554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.62  E-value=11  Score=33.60  Aligned_cols=97  Identities=7%  Similarity=-0.107  Sum_probs=70.0

Q ss_pred             CccchHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHH
Q 036356          355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH---GIEPRHQHYARVVDLLARAGYSNHAFKFIMNM---PIELRLSVRRA  428 (462)
Q Consensus       355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~  428 (462)
                      ...+-..++..-....+++.++..+-+++..   -..|+... .+.+..+ -.=++++++.++..=   |+-||..++..
T Consensus        63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~  140 (418)
T KOG4570|consen   63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCL  140 (418)
T ss_pred             ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchhhHHH
Confidence            4555666676666778899999999888764   22232211 2223333 334677888877664   89999999999


Q ss_pred             HHHHHHccCChHHHHHHHHhhhhcC
Q 036356          429 LLSAWKIPMQQWENMLQTIRGIDEG  453 (462)
Q Consensus       429 l~~~~~~~~~~~~a~~~~~~~~~~~  453 (462)
                      ++..+.+.+++.+|...+..|+++.
T Consensus       141 l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  141 LMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999988876653

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.52  E-value=9.9  Score=32.06  Aligned_cols=74  Identities=11%  Similarity=-0.072  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHhHHHHHHHH
Q 036356          327 VNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH--GIEPRHQHYARVVDL  400 (462)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~  400 (462)
                      |.+.-+..+.+.+.+++|+...+.-.   ..|..+-..++..+|-.|++++|..-++-.-..  ...+...+|..+|.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            34455667778888899988877544   246777888999999999999999888877762  233346677777754

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=81.17  E-value=46  Score=30.78  Aligned_cols=53  Identities=11%  Similarity=0.108  Sum_probs=35.7

Q ss_pred             HHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC
Q 036356          140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL  201 (462)
Q Consensus       140 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  201 (462)
                      ...+..+.|+|+...+.....       .+..++...|.++...  +.++.+++...+++..
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~-------~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r   56 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQS-------NEDSPEYSFYRALLAL--RQGDYDEAKKYIEKAR   56 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhc-------cCCChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence            456788899999866666553       1223355666655544  7889998888887655

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=81.02  E-value=6.6  Score=31.38  Aligned_cols=87  Identities=10%  Similarity=-0.085  Sum_probs=52.1

Q ss_pred             HHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh-hccCCChhhHHHHHHhh--cCCCcchHHHHHHhh
Q 036356           17 LKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY-HLWSRTEWSAFGSFDGL--LSNEENEYGTALDCS   93 (462)
Q Consensus        17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~m--~~~~~~~~~~ll~~~   93 (462)
                      +..-.+.++..++..+++-+.-.....         +....+... +...|+|.+|+.+|+.+  ..|.......|+..|
T Consensus        17 ~~~al~~~~~~D~e~lL~ALrvLRP~~---------~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C   87 (160)
T PF09613_consen   17 LSVALRLGDPDDAEALLDALRVLRPEF---------PELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC   87 (160)
T ss_pred             HHHHHccCChHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            333456778888888888887665321         333344444 89999999999999999  444444444555544


Q ss_pred             cCccchhhHHHHH-HHHHHhc
Q 036356           94 CDLEFLEQGKIVH-GFMIKLG  113 (462)
Q Consensus        94 ~~~~~~~~a~~~~-~~m~~~g  113 (462)
                      ....+ +..++.+ ++....+
T Consensus        88 L~~~~-D~~Wr~~A~evle~~  107 (160)
T PF09613_consen   88 LYALG-DPSWRRYADEVLESG  107 (160)
T ss_pred             HHHcC-ChHHHHHHHHHHhcC
Confidence            43332 3334333 3344444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=80.82  E-value=3.5  Score=23.90  Aligned_cols=26  Identities=8%  Similarity=0.178  Sum_probs=15.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          392 QHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       392 ~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .+++.|...|...|++++|..++++.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHH
Confidence            35566666666666666666666554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=80.10  E-value=2  Score=23.65  Aligned_cols=25  Identities=8%  Similarity=0.122  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          393 HYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       393 ~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .|..+...+...|++++|++.+++.
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~a   27 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKA   27 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3455555666666666666666554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	462
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 64/480 (13%), Positives = 138/480 (28%), Gaps = 140/480 (29%)

Query: 2   QVAWVAPNGC-TPPLVLKACVALPSLLMGPRV----HGQIFSLGF------LVCYLFDGL 50
           ++ W+    C +P  VL+    L   +         H     L        L   L    
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 51  FDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDC--------SCDLEFLEQG 102
           ++  ++ L   ++ +   W+AF                 L C            +FL   
Sbjct: 243 YENCLLVLL--NVQNAKAWNAFN----------------LSCKILLTTRFKQVTDFLSAA 284

Query: 103 KIVHGFMIKLGLELESDLLISLTA-------------VCRYQPNVTLRNAMISGYAKNGY 149
              H  +    + L  D + SL               V    P    R ++I+       
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP---RRLSIIA------- 334

Query: 150 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT-LDKDVVMR 208
             E+++      D +    ++ N   + T++          +   MF   +       + 
Sbjct: 335 --ESIRDGLATWDNW----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 209 SAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE 268
           + ++       W                         D+   +   +V+       +E +
Sbjct: 389 TILLSLI----W------------------------FDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 269 S--------DLLISLTAVCRYQPNVTLWNAMISGY-AKNGYAEEAVKLFPKWMD-Y---Y 315
                     + + L      +    L  +++  Y     +  +   L P ++D Y   +
Sbjct: 421 PKESTISIPSIYLELKVKLENEY--ALHRSIVDHYNIPKTFDSD--DLIPPYLDQYFYSH 476

Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
           IG   +    I +   + ++     +D    F ++ +  D    +A   G  L+ L +  
Sbjct: 477 IG---HHLKNIEHPERMTLFRMV-FLDFR--FLEQKIRHDSTAWNA--SGSILNTLQQ-- 526

Query: 376 WVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLS-----VRRALL 430
                  + + I      Y R+V+ +           F+  +   L  S     +R AL+
Sbjct: 527 ---LKFYKPY-ICDNDPKYERLVNAI---------LDFLPKIEENLICSKYTDLLRIALM 573

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	462
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.88
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.88
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.87
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.86
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.83
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.79
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.77
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.77
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.76
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.75
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.75
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.73
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.72
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.72
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.72
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.68
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.68
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.67
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.67
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.64
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.64
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.6
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.6
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.59
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.58
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.55
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.55
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.55
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.52
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.48
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.42
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.41
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.4
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.4
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.38
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.37
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.37
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.37
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.37
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.37
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.36
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.36
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.35
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.34
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.34
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.34
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.34
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.33
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.31
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.29
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.28
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.26
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.26
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.25
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.23
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.23
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.21
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.21
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.19
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.15
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.15
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.15
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.14
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.13
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.12
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.11
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.09
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.01
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.99
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.96
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.95
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.95
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.94
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.93
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.92
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.91
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.9
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.86
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.85
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.83
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.81
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.75
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.7
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.61
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.58
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.57
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.55
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.53
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.53
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.52
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.52
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.51
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.51
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.5
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.5
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.5
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.5
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.49
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.49
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.49
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.47
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.46
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.45
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.45
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.43
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.4
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.38
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.37
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.36
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.35
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.3
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.27
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.24
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.24
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.24
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.21
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.19
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.19
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.18
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.16
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.15
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.14
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.14
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.13
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.12
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.1
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.08
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.06
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.04
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.03
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.02
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.02
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.02
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.99
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.99
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.98
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.98
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.97
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.96
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.96
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.95
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.95
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.94
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.92
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.91
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.91
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.87
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.86
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.84
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.83
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.83
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.8
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.79
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.78
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.77
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.77
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.75
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.75
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.74
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.74
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.72
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.7
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.69
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.65
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.64
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.61
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.6
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.6
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.58
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.58
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.52
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.5
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.44
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.41
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.41
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.37
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.36
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.35
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.3
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.29
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.29
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.21
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.02
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.94
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.91
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.85
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.61
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.61
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.57
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.49
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.41
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.4
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	96.3
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.18
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.1
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.01
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.92
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.86
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.81
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.76
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.46
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.43
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.15
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.78
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.28
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	93.5
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.43
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.26
1pc2_A	152	Mitochondria fission protein; unknown function; NM	92.36
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	91.63
1pc2_A	152	Mitochondria fission protein; unknown function; NM	91.39
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	91.1
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	90.36
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.19
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	89.76
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	89.68
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.56
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	87.88
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	87.76
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	87.6
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	87.53
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	85.82
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	84.83
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	84.26
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.25
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.11
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	83.63
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	83.39
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	80.72
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	80.62
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	80.5
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	80.23
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	80.23

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.9e-34  Score=286.56  Aligned_cols=414  Identities=7%  Similarity=-0.045  Sum_probs=336.3

Q ss_pred             CCCCChHHHHHhhccCCCCccchhhhHhHhhhCchh-------------------hhhhhcC--CCCCceeehhh---hc
Q 036356            8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-------------------CYLFDGL--FDRTIVFLDLY---HL   63 (462)
Q Consensus         8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------~~~~~~~--~~~~~~~~~~~---~~   63 (462)
                      ++...|+.++..|.+.|++++|..+++++.+.....                   ..+|+.+  ..++..+++.+   |.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~  161 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV  161 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence            455568888888888899988998888887544321                   4445544  34566677766   88


Q ss_pred             cCCChhhHHHHHHhhcC-------------------CCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH---H
Q 036356           64 WSRTEWSAFGSFDGLLS-------------------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---L  121 (462)
Q Consensus        64 ~~~~~~~A~~~~~~m~~-------------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---l  121 (462)
                      +.|++++|+++|+++.+                   ++..+|+.++.++.+.|++++|.++|++|.+.++. .++.   +
T Consensus       162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l  240 (597)
T 2xpi_A          162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQL  240 (597)
T ss_dssp             HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHH
Confidence            88888888888886521                   24678888888888888888888888888877641 1111   1


Q ss_pred             HHHhh-------------------hcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHH
Q 036356          122 ISLTA-------------------VCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID  182 (462)
Q Consensus       122 ~~~~~-------------------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~  182 (462)
                      ...+.                   ..+..+...+|+.++..|.+.|++++|.++|+++     ...  +++..+++.++.
T Consensus       241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-----~~~--~~~~~~~~~l~~  313 (597)
T 2xpi_A          241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI-----NGL--EKSSDLLLCKAD  313 (597)
T ss_dssp             HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS-----TTG--GGCHHHHHHHHH
T ss_pred             HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh-----hcC--CchHHHHHHHHH
Confidence            10000                   0001122233455567788899999999999998     333  588999999999


Q ss_pred             HHHhcCCcccHHHHhhccC---CCCcchHHHHHHHHHhCc--hHHHHHHHhhhc---CCcchHHHHHHhhcCccchhhhH
Q 036356          183 MYAKCGSVDLAPMFFDRTL---DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGK  254 (462)
Q Consensus       183 ~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~  254 (462)
                      +|.+.|++++|.++|+++.   ..+..+|+.++.++.+.|  ++|..+|+++.+   .+..+++.+...|.+.|++++|.
T Consensus       314 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  393 (597)
T 2xpi_A          314 TLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR  393 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHH
Confidence            9999999999999999886   347788999999999999  999999999988   46778999999999999999999


Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHH
Q 036356          255 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM  334 (462)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~  334 (462)
                      ++|+.+.+..                 +.+..+|+.++.+|.+.|++++|.++|++++     .. .+.+..+|+.++.+
T Consensus       394 ~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~-~~~~~~~~~~l~~~  450 (597)
T 2xpi_A          394 RYFSKSSTMD-----------------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAA-----RL-FQGTHLPYLFLGMQ  450 (597)
T ss_dssp             HHHHHHHHHC-----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HT-TTTCSHHHHHHHHH
T ss_pred             HHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----Hh-CccchHHHHHHHHH
Confidence            9999998864                 2568899999999999999999999999943     32 23478899999999


Q ss_pred             HHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHHhcC
Q 036356          335 YAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR--HQHYARVVDLLARAG  405 (462)
Q Consensus       335 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g  405 (462)
                      |.+.|++++|.++|+++.+   .+..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..+..+|.+.|
T Consensus       451 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g  530 (597)
T 2xpi_A          451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK  530 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence            9999999999999999863   56789999999999999999999999999886    67888  789999999999999


Q ss_pred             ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          406 YSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       406 ~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      ++++|.++++++ ...| +..+|..+..+|...|++++|...+.++++.
T Consensus       531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            999999999998 3334 7889999999999999999999999887664

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-31  Score=267.55  Aligned_cols=379  Identities=10%  Similarity=-0.074  Sum_probs=263.4

Q ss_pred             hhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcch
Q 036356           44 CYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES  118 (462)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~  118 (462)
                      +..+..++.+++..|+.+   +.+.|++++|+.+|++|  ..|+..++..++.+|.+.|++++|..+|+++....     
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----  147 (597)
T 2xpi_A           73 RNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN-----  147 (597)
T ss_dssp             ---------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGG-----
T ss_pred             CCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccc-----
Confidence            445556666778888888   99999999999999999  77888999999999999999999999999886442     


Q ss_pred             hHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhc--------------CCCCCchHHHHHHHHH
Q 036356          119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS--------------EYRNNVIVNTVLIDMY  184 (462)
Q Consensus       119 ~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--------------~~~~~~~~~~~li~~~  184 (462)
                                   ++..+++.++.+|.+.|++++|.++|+++.    ...              +.+++..+|+.++.+|
T Consensus       148 -------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  210 (597)
T 2xpi_A          148 -------------RSSACRYLAAFCLVKLYDWQGALNLLGETN----PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY  210 (597)
T ss_dssp             -------------TCHHHHHHHHHHHHHTTCHHHHHHHHCSSC----TTC----------CCCSSCCHHHHHHHHHHHHH
T ss_pred             -------------cchhHHHHHHHHHHHHhhHHHHHHHHhccC----CccccccccccccccccccchhHHHHHHHHHHH
Confidence                         444555555555555555555555555320    111              2233455555555555


Q ss_pred             HhcCCcccHHHHhhccCCCCc---chHHHH--------------------------------------HHHHHhCc--hH
Q 036356          185 AKCGSVDLAPMFFDRTLDKDV---VMRSAM--------------------------------------IVGYGLHE--WS  221 (462)
Q Consensus       185 ~~~g~~~~a~~~~~~m~~~~~---~~~~~l--------------------------------------i~~~~~~~--~~  221 (462)
                      .+.|++++|.++|+++.+.++   ..+..+                                      +..|.+.|  ++
T Consensus       211 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  290 (597)
T 2xpi_A          211 TNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR  290 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence            555555555555555442111   111111                                      11222233  45


Q ss_pred             HHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhh---c---------------C
Q 036356          222 AFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC---R---------------Y  281 (462)
Q Consensus       222 a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~---------------~  281 (462)
                      |.++|+++..  ++..+++.++.++.+.|++++|.++|+.+.+.+. .+..++..++..+   |               .
T Consensus       291 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  369 (597)
T 2xpi_A          291 AEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH  369 (597)
T ss_dssp             HHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence            5555555544  4455555555555555555555555555554432 1233333333221   1               2


Q ss_pred             CCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccc
Q 036356          282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVM  358 (462)
Q Consensus       282 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~  358 (462)
                      +.+..+|+.++..|.+.|++++|.++|++++     +.. +.+..+|+.++.+|.+.|++++|.++|+++.   ..+..+
T Consensus       370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  443 (597)
T 2xpi_A          370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSS-----TMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP  443 (597)
T ss_dssp             TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHH
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHH-----HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence            4578899999999999999999999999953     322 2357799999999999999999999999876   347889


Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHH
Q 036356          359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM-------PIELR--LSVRRA  428 (462)
Q Consensus       359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~  428 (462)
                      |+.++.+|.+.|++++|.++|+++.+  ..| +..+|+.++..|.+.|++++|.++|+++       +..|+  ..+|..
T Consensus       444 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~  521 (597)
T 2xpi_A          444 YLFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN  521 (597)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence            99999999999999999999999998  344 4889999999999999999999999998       44787  789999


Q ss_pred             HHHHHHccCChHHHHHHHHhhhhcC
Q 036356          429 LLSAWKIPMQQWENMLQTIRGIDEG  453 (462)
Q Consensus       429 l~~~~~~~~~~~~a~~~~~~~~~~~  453 (462)
                      +..+|.+.|++++|+..+.+++..+
T Consensus       522 l~~~~~~~g~~~~A~~~~~~~~~~~  546 (597)
T 2xpi_A          522 LGHAYRKLKMYDAAIDALNQGLLLS  546 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            9999999999999999998887654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=6.9e-31  Score=252.60  Aligned_cols=212  Identities=11%  Similarity=0.028  Sum_probs=178.2

Q ss_pred             hhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCe-eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHH
Q 036356          100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV-TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT  178 (462)
Q Consensus       100 ~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~  178 (462)
                      ..++.+.+++.+.+.                .+.+ ..++.+|++|++.|++++|+++|++|     .+.|++||..|||
T Consensus         7 s~~e~L~~~~~~k~~----------------~~spe~~l~~~id~c~k~G~~~~A~~lf~~M-----~~~Gv~pd~~tyn   65 (501)
T 4g26_A            7 SPSENLSRKAKKKAI----------------QQSPEALLKQKLDMCSKKGDVLEALRLYDEA-----RRNGVQLSQYHYN   65 (501)
T ss_dssp             ---------------------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHH-----HHHTCCCCHHHHH
T ss_pred             chHHHHHHHHHHhcc----------------cCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-----HHcCCCCCHhHHH
Confidence            445667777777776                4443 46889999999999999999999999     8999999999999


Q ss_pred             HHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHH
Q 036356          179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHG  258 (462)
Q Consensus       179 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  258 (462)
                      +||.+|++.+..+++                                                   .+.+.++.|.++|+
T Consensus        66 ~Li~~c~~~~~~~~~---------------------------------------------------~~~~~l~~A~~lf~   94 (501)
T 4g26_A           66 VLLYVCSLAEAATES---------------------------------------------------SPNPGLSRGFDIFK   94 (501)
T ss_dssp             HHHHHHTTCCCCSSS---------------------------------------------------SCCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCchhhh---------------------------------------------------hhcchHHHHHHHHH
Confidence            999999988765543                                                   34566788999999


Q ss_pred             HHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhc
Q 036356          259 FMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC  338 (462)
Q Consensus       259 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~  338 (462)
                      +|.+.|+.                ||..+|+++|.+|++.|++++|.++|++     |...|+.||..||+++|.+|++.
T Consensus        95 ~M~~~G~~----------------Pd~~tyn~lI~~~~~~g~~~~A~~l~~~-----M~~~g~~Pd~~tyn~lI~~~~~~  153 (501)
T 4g26_A           95 QMIVDKVV----------------PNEATFTNGARLAVAKDDPEMAFDMVKQ-----MKAFGIQPRLRSYGPALFGFCRK  153 (501)
T ss_dssp             HHHHTTCC----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHH-----HHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHhCCC----------------CCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCCccceehHHHHHHHHC
Confidence            99999985                9999999999999999999999999999     88899999999999999999999


Q ss_pred             CCcchHHHHhccCC----CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 036356          339 GSVDLAPMFFDRTL----DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA  404 (462)
Q Consensus       339 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  404 (462)
                      |++++|.++|++|.    .||..||++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus       154 g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          154 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            99999999999997    5899999999999999999999999999999999999999999999999864

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=3.3e-30  Score=247.84  Aligned_cols=182  Identities=9%  Similarity=0.062  Sum_probs=171.7

Q ss_pred             cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC---------hhHH
Q 036356          234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY---------AEEA  304 (462)
Q Consensus       234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~---------~~~a  304 (462)
                      ...++.+|.+|++.|++++|.++|++|.+.|+.                ||..+||+||.+|++.+.         +++|
T Consensus        26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~----------------pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A   89 (501)
T 4g26_A           26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQ----------------LSQYHYNVLLYVCSLAEAATESSPNPGLSRG   89 (501)
T ss_dssp             HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC----------------CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----------------CCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence            456888999999999999999999999999985                888899999998887665         6889


Q ss_pred             HHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC----CCCccchHHHHHHHHhcCChHHHHHHHH
Q 036356          305 VKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL----DKDVVMRSAMTVGYGLHGLGEEGWVLFH  380 (462)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~  380 (462)
                      .++|++     |...|+.||..||++||.+|++.|++++|.++|++|.    .||..||++||.+|++.|++++|.++|+
T Consensus        90 ~~lf~~-----M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A           90 FDIFKQ-----MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             HHHHHH-----HHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHH-----HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence            999999     8889999999999999999999999999999999997    5899999999999999999999999999


Q ss_pred             HHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHcc
Q 036356          381 HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM---PIELRLSVRRALLSAWKIP  436 (462)
Q Consensus       381 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~l~~~~~~~  436 (462)
                      +|.+.|+.||..||++||.+|++.|++++|.+++++|   +..|+..||+.++..++..
T Consensus       165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999   8999999999999998864

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=1.1e-24  Score=205.21  Aligned_cols=337  Identities=11%  Similarity=0.024  Sum_probs=164.7

Q ss_pred             cCCChhhHHHHHHhh--cCCC-cchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHH
Q 036356           64 WSRTEWSAFGSFDGL--LSNE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAM  140 (462)
Q Consensus        64 ~~~~~~~A~~~~~~m--~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~l  140 (462)
                      +.|++++|+..++.+  ..|+ ...+..+...+.+.|++++|...++...+..+                 .+..+|..+
T Consensus        11 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-----------------~~~~~~~~l   73 (388)
T 1w3b_A           11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-----------------LLAEAYSNL   73 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------------CchHHHHHH
Confidence            345555555555544  2222 23333444444445555555555555544432                 344455555


Q ss_pred             HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC-chHHHHHHHHHHhcCCcccHHHHhhccCC--CC-cchHHHHHHHHH
Q 036356          141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD-VVMRSAMIVGYG  216 (462)
Q Consensus       141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~li~~~~  216 (462)
                      ..++.+.|++++|++.|+++     ..  ..|+ ..+|..+..++.+.|++++|.+.|+++.+  |+ ...+..+...+.
T Consensus        74 g~~~~~~g~~~~A~~~~~~a-----l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  146 (388)
T 1w3b_A           74 GNVYKERGQLQEAIEHYRHA-----LR--LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK  146 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHH-----HH--HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHH-----HH--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            55555555555555555554     11  1222 33445555555555555555555554431  22 223333344444


Q ss_pred             hCc--hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHH
Q 036356          217 LHE--WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM  291 (462)
Q Consensus       217 ~~~--~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l  291 (462)
                      ..|  ++|...|+++..  |+ ..+|..+...+.+.|++++|...|+.+.+.+.                 .+...|..+
T Consensus       147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~l  209 (388)
T 1w3b_A          147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-----------------NFLDAYINL  209 (388)
T ss_dssp             TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------------CcHHHHHHH
Confidence            444  555555555544  22 34455555555555555555555555555431                 234445555


Q ss_pred             HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHH
Q 036356          292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYG  367 (462)
Q Consensus       292 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~  367 (462)
                      ...+...|++++|...|.+.+     .  ..| +..++..+..+|.+.|++++|...|+++.+  | +..+|..+...+.
T Consensus       210 g~~~~~~~~~~~A~~~~~~al-----~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  282 (388)
T 1w3b_A          210 GNVLKEARIFDRAVAAYLRAL-----S--LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK  282 (388)
T ss_dssp             HHHHHTTTCTTHHHHHHHHHH-----H--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-----h--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            555555555555555555522     1  122 244555555555555555555555555432  2 2334555555555


Q ss_pred             hcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHH
Q 036356          368 LHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENML  444 (462)
Q Consensus       368 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~  444 (462)
                      +.|++++|.+.++++.+  ..| +..+|..+...+.+.|++++|.+.++++ ...| +..++..+...+...|++++|+.
T Consensus       283 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  360 (388)
T 1w3b_A          283 EKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM  360 (388)
T ss_dssp             HHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            55555555555555555  223 2445555555555555555555555554 3223 34455555555555555555555


Q ss_pred             HHHhhh
Q 036356          445 QTIRGI  450 (462)
Q Consensus       445 ~~~~~~  450 (462)
                      .+.+++
T Consensus       361 ~~~~a~  366 (388)
T 1w3b_A          361 HYKEAI  366 (388)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554444

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=3.5e-24  Score=201.84  Aligned_cols=327  Identities=12%  Similarity=0.081  Sum_probs=279.6

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +...|++++|...++..   .+.+..+|..+..++.+.|++++|...|+++.+..+                 .+..+|.
T Consensus        43 ~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~  105 (388)
T 1w3b_A           43 HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-----------------DFIDGYI  105 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc-----------------chHHHHH
Confidence            88899999999999988   555678999999999999999999999999998754                 4566799


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC-chHHHHHHHHHHhcCCcccHHHHhhccCC--C-CcchHHHHHHH
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMIVG  214 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~  214 (462)
                      .+..++.+.|++++|.+.|+++     ..  ..|+ ...+..+...+...|++++|.+.|+++..  | +..+|+.+...
T Consensus       106 ~l~~~~~~~g~~~~A~~~~~~a-----l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  178 (388)
T 1w3b_A          106 NLAAALVAAGDMEGAVQAYVSA-----LQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV  178 (388)
T ss_dssp             HHHHHHHHHSCSSHHHHHHHHH-----HH--HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH-----HH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999997     33  2344 55677788899999999999999998763  3 56788999999


Q ss_pred             HHhCc--hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHH
Q 036356          215 YGLHE--WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN  289 (462)
Q Consensus       215 ~~~~~--~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  289 (462)
                      +...|  ++|...|+++..  |+ ...+..+...+...|++++|...+....+..                 +.+..++.
T Consensus       179 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~  241 (388)
T 1w3b_A          179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-----------------PNHAVVHG  241 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-----------------TTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------------cCCHHHHH
Confidence            99999  999999999988  44 5678888899999999999999999998864                 24678899


Q ss_pred             HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHH
Q 036356          290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGY  366 (462)
Q Consensus       290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~  366 (462)
                      .+...|.+.|++++|...|++.+     ..+ +.+..+|..+...|.+.|++++|...|+++.   ..+..+|..+...+
T Consensus       242 ~l~~~~~~~g~~~~A~~~~~~al-----~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  315 (388)
T 1w3b_A          242 NLACVYYEQGLIDLAIDTYRRAI-----ELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH-----HTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH-----hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence            99999999999999999999943     322 2246789999999999999999999999886   34677899999999


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHccC
Q 036356          367 GLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLSAWKIPM  437 (462)
Q Consensus       367 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~  437 (462)
                      ...|++++|.+.++++.+  ..|+ ..++..+...|.+.|++++|.+.++++ ...|+ ...|..+...+...|
T Consensus       316 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          316 REQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence            999999999999999998  5666 788999999999999999999999998 66664 556666666655544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=4e-21  Score=187.67  Aligned_cols=344  Identities=11%  Similarity=-0.055  Sum_probs=278.6

Q ss_pred             hccCCChhhHHHHHHhh--cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHH
Q 036356           62 HLWSRTEWSAFGSFDGL--LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNA  139 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~  139 (462)
                      +.+.|++++|+..|+++  ..|+..+|..+..++.+.|++++|...++++.+.++                 .+..+|..
T Consensus        16 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~   78 (514)
T 2gw1_A           16 FFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-----------------DYSKVLLR   78 (514)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-----------------CCHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-----------------HHHHHHHH
Confidence            77889999999999999  678999999999999999999999999999999865                 56788999


Q ss_pred             HHHHHHhCCChhHHHHHHHHhhhhhhhhcCCC------------------------------------------------
Q 036356          140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR------------------------------------------------  171 (462)
Q Consensus       140 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~------------------------------------------------  171 (462)
                      +..++.+.|++++|...|+++     ...+..                                                
T Consensus        79 l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  153 (514)
T 2gw1_A           79 RASANEGLGKFADAMFDLSVL-----SLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKD  153 (514)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH-----HHSSSCCGGGTHHHHHHHHHHHHHHHHTTC------------------------
T ss_pred             HHHHHHHHhhHHHHHHHHHHH-----HhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHh
Confidence            999999999999999999987     222210                                                


Q ss_pred             ------------------------------CCchHHHHHHHHHHh---cCCcccHHHHhhccCC----------------
Q 036356          172 ------------------------------NNVIVNTVLIDMYAK---CGSVDLAPMFFDRTLD----------------  202 (462)
Q Consensus       172 ------------------------------~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~----------------  202 (462)
                                                    .+...+......+..   .|++++|...|+++.+                
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  233 (514)
T 2gw1_A          154 KQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK  233 (514)
T ss_dssp             ---CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH
T ss_pred             hccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccC
Confidence                                          012233333333333   7889999998877543                


Q ss_pred             C-CcchHHHHHHHHHhCc--hHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHH
Q 036356          203 K-DVVMRSAMIVGYGLHE--WSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA  277 (462)
Q Consensus       203 ~-~~~~~~~li~~~~~~~--~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  277 (462)
                      | +...+..+...+...|  ++|...|++...  |+...+..+..++...|++++|...++.+.+..             
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------  300 (514)
T 2gw1_A          234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-------------  300 (514)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-------------
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-------------
Confidence            1 2345667777788888  999999998887  667778888888899999999999999888754             


Q ss_pred             hhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---C
Q 036356          278 VCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---K  354 (462)
Q Consensus       278 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~  354 (462)
                          +.+...|..+...|...|++++|...|.+.+     ... +.+...+..+...|...|++++|...|+++.+   .
T Consensus       301 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  370 (514)
T 2gw1_A          301 ----SNNSSVYYHRGQMNFILQNYDQAGKDFDKAK-----ELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE  370 (514)
T ss_dssp             ----TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH-----HTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT
T ss_pred             ----cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-----HhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence                2467788899999999999999999999843     222 23567888899999999999999999998763   3


Q ss_pred             CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------HhHHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-C
Q 036356          355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-------HQHYARVVDLLAR---AGYSNHAFKFIMNM-PIEL-R  422 (462)
Q Consensus       355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-------~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~  422 (462)
                      +...|..+...|...|++++|...++++.+.  .|+       ...|..+...+..   .|++++|.+.+++. ...| +
T Consensus       371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  448 (514)
T 2gw1_A          371 APEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS  448 (514)
T ss_dssp             CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence            5678888999999999999999999998873  333       3388999999999   99999999999988 3334 5


Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          423 LSVRRALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       423 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      ...+..+...+...|++++|...+.+.+..
T Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          449 EQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            778899999999999999999888876654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.88  E-value=1.2e-20  Score=181.09  Aligned_cols=301  Identities=11%  Similarity=0.000  Sum_probs=220.6

Q ss_pred             CCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356           81 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus        81 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      .+...+..+...+.+.|++++|..+|+++.+..+                 .+..+|..+..++...|++++|+..|+++
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   86 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-----------------DNYIAYYRRATVFLAMGKSKAALPDLTKV   86 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3455677777777777777777777777776654                 56667777777777777777777777775


Q ss_pred             hhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCc------chHHHHHH------------HHHhCc--h
Q 036356          161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV------VMRSAMIV------------GYGLHE--W  220 (462)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------~~~~~li~------------~~~~~~--~  220 (462)
                           ...+ +.+..++..+..+|.+.|++++|...|+++.+.++      ..+..+..            .+...|  +
T Consensus        87 -----l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  160 (450)
T 2y4t_A           87 -----IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT  160 (450)
T ss_dssp             -----HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             -----HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence                 2222 23456677777777777777777777777654222      34444422            255555  8


Q ss_pred             HHHHHHHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc
Q 036356          221 SAFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK  297 (462)
Q Consensus       221 ~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~  297 (462)
                      +|+..|+++..   .+...+..+..++.+.|++++|...++.+.+..                 +.+..+|..+...|.+
T Consensus       161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~  223 (450)
T 2y4t_A          161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-----------------NDNTEAFYKISTLYYQ  223 (450)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-----------------CSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHH
Confidence            88888888777   456678888888889999999999999888764                 2567888889999999


Q ss_pred             CCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHH------------HHHHHhcCCcchHHHHhccCCC--CC-----cc
Q 036356          298 NGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVL------------IDMYAKCGSVDLAPMFFDRTLD--KD-----VV  357 (462)
Q Consensus       298 ~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~--~~-----~~  357 (462)
                      .|++++|...|.+++     ..  .|+ ...+..+            ...|.+.|++++|...|+++.+  |+     ..
T Consensus       224 ~g~~~~A~~~~~~~~-----~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  296 (450)
T 2y4t_A          224 LGDHELSLSEVRECL-----KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR  296 (450)
T ss_dssp             TTCHHHHHHHHHHHH-----HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred             cCCHHHHHHHHHHHH-----Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHH
Confidence            999999999998843     22  333 3344443            7788889999999999988763  44     33


Q ss_pred             chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHH
Q 036356          358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALL  430 (462)
Q Consensus       358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~  430 (462)
                      .|..+...+.+.|++++|...++++.+  ..|+ ...|..+..+|...|++++|.+.+++. .+.|+ ...+..+.
T Consensus       297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  370 (450)
T 2y4t_A          297 SKERICHCFSKDEKPVEAIRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            677888899999999999999999887  4564 788899999999999999999999988 66665 44555554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.87  E-value=2.4e-20  Score=179.04  Aligned_cols=338  Identities=12%  Similarity=-0.001  Sum_probs=267.2

Q ss_pred             Cceeehhh---hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhh
Q 036356           54 TIVFLDLY---HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV  127 (462)
Q Consensus        54 ~~~~~~~~---~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~  127 (462)
                      +...|..+   +.+.|++++|+..|+.+   .+.+..+|..+..++.+.|++++|...|+++.+.++             
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------------   91 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-------------   91 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-------------
Confidence            34455555   88999999999999999   455678999999999999999999999999999876             


Q ss_pred             cCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC-c---hHHHHH------------HHHHHhcCCcc
Q 036356          128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-V---IVNTVL------------IDMYAKCGSVD  191 (462)
Q Consensus       128 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~---~~~~~l------------i~~~~~~g~~~  191 (462)
                          .+..+|..+...|.+.|++++|.+.|+++     ..  ..|+ .   ..+..+            ...+.+.|+++
T Consensus        92 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  160 (450)
T 2y4t_A           92 ----DFTAARLQRGHLLLKQGKLDEAEDDFKKV-----LK--SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT  160 (450)
T ss_dssp             ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HT--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             ----CcHHHHHHHHHHHHHcCCHHHHHHHHHHH-----Hh--cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence                56788999999999999999999999997     33  2343 3   555555            44489999999


Q ss_pred             cHHHHhhccC---CCCcchHHHHHHHHHhCc--hHHHHHHHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHh
Q 036356          192 LAPMFFDRTL---DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKL  263 (462)
Q Consensus       192 ~a~~~~~~m~---~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  263 (462)
                      +|...|+++.   ..+...+..+..+|...|  ++|...|+++..   .+..++..+..++.+.|++++|...++.+.+.
T Consensus       161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  240 (450)
T 2y4t_A          161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL  240 (450)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999876   346678888999999999  999999999988   56788999999999999999999999999876


Q ss_pred             CCCcchHHHHHHHHhhcCCCCHhHHHHH------------HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-----hh
Q 036356          264 GLELESDLLISLTAVCRYQPNVTLWNAM------------ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-----VI  326 (462)
Q Consensus       264 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-----~~  326 (462)
                      ..                 .+...+..+            ...+.+.|++++|...|.+++     ..  .|+     ..
T Consensus       241 ~p-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l-----~~--~p~~~~~~~~  296 (450)
T 2y4t_A          241 DQ-----------------DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM-----KT--EPSIAEYTVR  296 (450)
T ss_dssp             CT-----------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HH--CCSSHHHHHH
T ss_pred             CC-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----hc--CCcchHHHHH
Confidence            42                 233334333            788999999999999999953     22  343     45


Q ss_pred             HHHHHHHHHHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHH--
Q 036356          327 VNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDL--  400 (462)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~--  400 (462)
                      .|..+...+.+.|++++|...++++.  .| +...|..+..+|...|++++|...++++.+  +.|+ ...+..+..+  
T Consensus       297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~  374 (450)
T 2y4t_A          297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQR  374 (450)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHH
Confidence            78889999999999999999999876  34 678899999999999999999999999998  7787 4555555533  


Q ss_pred             ----------HHhcC-----ChHHHHHHHHhC--CCCCCH-----------HHHHHHHHHHHccCChHH
Q 036356          401 ----------LARAG-----YSNHAFKFIMNM--PIELRL-----------SVRRALLSAWKIPMQQWE  441 (462)
Q Consensus       401 ----------~~~~g-----~~~~A~~~~~~m--~~~p~~-----------~~~~~l~~~~~~~~~~~~  441 (462)
                                |...|     +.+++.+.+++.  ...||.           ..+..+..+|-..++.+.
T Consensus       375 ~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~  443 (450)
T 2y4t_A          375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM  443 (450)
T ss_dssp             HHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred             HhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence                      33334     556667777763  233331           255566666666665543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5.3e-20  Score=179.70  Aligned_cols=370  Identities=9%  Similarity=-0.048  Sum_probs=290.7

Q ss_pred             hHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh---cCCCcchH
Q 036356           13 PPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL---LSNEENEY   86 (462)
Q Consensus        13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m---~~~~~~~~   86 (462)
                      +..+-..+.+.|+++.|...|+++++..            |+...|..+   +...|++++|+..|+.+   .+.+..+|
T Consensus         9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~------------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   76 (514)
T 2gw1_A            9 LKDKGNQFFRNKKYDDAIKYYNWALELK------------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVL   76 (514)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcC------------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHH
Confidence            4556677889999999999999999876            576677666   99999999999999999   44456789


Q ss_pred             HHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH--HHHHhhh-------------------------------------
Q 036356           87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL--LISLTAV-------------------------------------  127 (462)
Q Consensus        87 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--l~~~~~~-------------------------------------  127 (462)
                      ..+..++.+.|++++|...|+++.+.+..-....  ++..+.+                                     
T Consensus        77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (514)
T 2gw1_A           77 LRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE  156 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc
Confidence            9999999999999999999999987764111110  1111100                                     


Q ss_pred             --------------cCCC--------C-CeeeHHHHHHHHHh---CCChhHHHHHHHHhhhhhhhh-----cC-C-----
Q 036356          128 --------------CRYQ--------P-NVTLRNAMISGYAK---NGYAEEAVKLFPKWMDYYIGK-----SE-Y-----  170 (462)
Q Consensus       128 --------------~~~~--------p-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~-----~~-~-----  170 (462)
                                    ....        | +...+......+..   .|++++|..+|++.     ..     .. .     
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~  231 (514)
T 2gw1_A          157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA-----ARLFEEQLDKNNEDEK  231 (514)
T ss_dssp             CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH-----HHHHHHHTTTSTTCHH
T ss_pred             CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH-----HHHhhhhhccCccccc
Confidence                          0000        1 12223333333443   89999999999997     33     11 1     


Q ss_pred             --CCCchHHHHHHHHHHhcCCcccHHHHhhccC--CCCcchHHHHHHHHHhCc--hHHHHHHHhhhc---CCcchHHHHH
Q 036356          171 --RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS---NEENEYGTAL  241 (462)
Q Consensus       171 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~---~~~~~~~~ll  241 (462)
                        +.+..++..+...+...|++++|...|++..  .|+...|..+...+...|  ++|...+++...   .+...+..+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  311 (514)
T 2gw1_A          232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG  311 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHH
Confidence              2245678889999999999999999999875  344667788888888888  999999999888   4677888899


Q ss_pred             HhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC
Q 036356          242 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY  321 (462)
Q Consensus       242 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  321 (462)
                      ..+...|++++|...++...+...                 .+...+..+...+.+.|++++|...+.+.+     .. .
T Consensus       312 ~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~-~  368 (514)
T 2gw1_A          312 QMNFILQNYDQAGKDFDKAKELDP-----------------ENIFPYIQLACLAYRENKFDDCETLFSEAK-----RK-F  368 (514)
T ss_dssp             HHHHHTTCTTHHHHHHHHHHHTCS-----------------SCSHHHHHHHHHTTTTTCHHHHHHHHHHHH-----HH-S
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCh-----------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HH-c
Confidence            999999999999999999988642                 467788999999999999999999999853     22 2


Q ss_pred             CCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-C------ccchHHHHHHHHh---cCChHHHHHHHHHHHHCCCCC
Q 036356          322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-D------VVMRSAMTVGYGL---HGLGEEGWVLFHHIRKHGIEP  389 (462)
Q Consensus       322 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~------~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p  389 (462)
                      +.+...+..+...|.+.|++++|...|+++.+  | +      ...|..+...+..   .|++++|...++++.+  ..|
T Consensus       369 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~  446 (514)
T 2gw1_A          369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDP  446 (514)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCT
T ss_pred             ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH--hCc
Confidence            23567888899999999999999999998763  2 2      2378899999999   9999999999999998  456


Q ss_pred             C-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036356          390 R-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS  424 (462)
Q Consensus       390 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~  424 (462)
                      + ..++..+...|.+.|++++|.+.+++. ...|+..
T Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  483 (514)
T 2gw1_A          447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME  483 (514)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence            5 778899999999999999999999998 5556543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.83  E-value=1.7e-18  Score=170.10  Aligned_cols=346  Identities=12%  Similarity=-0.035  Sum_probs=266.6

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +.+.|++++|+..|+++   .+.+..+|..+..++.+.|++++|.+.++++.+.++                 .+..++.
T Consensus        35 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~   97 (537)
T 3fp2_A           35 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-----------------DHSKALL   97 (537)
T ss_dssp             HHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------------chHHHHH
Confidence            88999999999999999   445678899999999999999999999999999875                 5778899


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCC------------------------------------CCCch-------
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------------------------------------RNNVI-------  175 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------------------------------~~~~~-------  175 (462)
                      .+...+...|++++|.+.|+.+.     ...-                                    .|+..       
T Consensus        98 ~la~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  172 (537)
T 3fp2_A           98 RRASANESLGNFTDAMFDLSVLS-----LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG  172 (537)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHh-----cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence            99999999999999999986541     0000                                    01100       


Q ss_pred             -----------------------HHHHHHHHHHh--------cCCcccHHHHhhccCCCCcc----------hHHHHHHH
Q 036356          176 -----------------------VNTVLIDMYAK--------CGSVDLAPMFFDRTLDKDVV----------MRSAMIVG  214 (462)
Q Consensus       176 -----------------------~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~----------~~~~li~~  214 (462)
                                             ....+...+..        .|++++|..+++++.+.++.          ++..+...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~  252 (537)
T 3fp2_A          173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF  252 (537)
T ss_dssp             TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_pred             hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHH
Confidence                                   11112211111        14778888888877643221          34455556


Q ss_pred             HHhCc--hHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHH
Q 036356          215 YGLHE--WSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA  290 (462)
Q Consensus       215 ~~~~~--~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  290 (462)
                      +...|  ++|...|++...  |+...+..+...+...|++++|...++.+.+..                 +.+..+|..
T Consensus       253 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~  315 (537)
T 3fp2_A          253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-----------------PEYPPTYYH  315 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-----------------TTCHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-----------------CCCHHHHHH
Confidence            66666  899999999888  777888888899999999999999999998865                 246788999


Q ss_pred             HHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHH
Q 036356          291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYG  367 (462)
Q Consensus       291 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~  367 (462)
                      +...+...|++++|...|.+.+     ... +.+...+..+...|...|++++|...|++..+   .+...|..+...+.
T Consensus       316 l~~~~~~~~~~~~A~~~~~~a~-----~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  389 (537)
T 3fp2_A          316 RGQMYFILQDYKNAKEDFQKAQ-----SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT  389 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH-----HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHH-----HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            9999999999999999999853     222 22467888899999999999999999998763   45668889999999


Q ss_pred             hcCChHHHHHHHHHHHHCC-----CCCCHhHHHHHHHHHHhc----------CChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036356          368 LHGLGEEGWVLFHHIRKHG-----IEPRHQHYARVVDLLARA----------GYSNHAFKFIMNM-PIEL-RLSVRRALL  430 (462)
Q Consensus       368 ~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~l~  430 (462)
                      ..|++++|.+.++++.+..     .......+..+...+...          |++++|...+++. ...| +...|..+.
T Consensus       390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  469 (537)
T 3fp2_A          390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA  469 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9999999999999987741     111123345556677777          9999999999998 3334 577899999


Q ss_pred             HHHHccCChHHHHHHHHhhhhc
Q 036356          431 SAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       431 ~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      ..+...|++++|...+.+.+..
T Consensus       470 ~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          470 QLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHh
Confidence            9999999999999888876654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.79  E-value=8e-18  Score=165.23  Aligned_cols=366  Identities=10%  Similarity=-0.017  Sum_probs=270.7

Q ss_pred             ChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh---cCCCcch
Q 036356           12 TPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL---LSNEENE   85 (462)
Q Consensus        12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m---~~~~~~~   85 (462)
                      .|..+-..+.+.|+++.|...|+.+++...           .+...|..+   +.+.|++++|+..|+++   .+.+..+
T Consensus        27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~   95 (537)
T 3fp2_A           27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDP-----------NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA   95 (537)
T ss_dssp             HHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCC-----------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHH
Confidence            456677788899999999999999998763           355666666   88999999999999999   4455778


Q ss_pred             HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHH-------------HHhhhcC---------CCCCe---------
Q 036356           86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI-------------SLTAVCR---------YQPNV---------  134 (462)
Q Consensus        86 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~-------------~~~~~~~---------~~p~~---------  134 (462)
                      +..+..++...|++++|...|+.+. .... ..+..+             ..+.+.-         ..|+.         
T Consensus        96 ~~~la~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  173 (537)
T 3fp2_A           96 LLRRASANESLGNFTDAMFDLSVLS-LNGD-FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI  173 (537)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHh-cCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHh
Confidence            9999999999999999999996332 1110 000000             0000000         00110         


Q ss_pred             -----------------e----eHHHHHHHHHhC--------CChhHHHHHHHHhhhhhhhhcCCCCC--------chHH
Q 036356          135 -----------------T----LRNAMISGYAKN--------GYAEEAVKLFPKWMDYYIGKSEYRNN--------VIVN  177 (462)
Q Consensus       135 -----------------~----~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~~~~~~~~--------~~~~  177 (462)
                                       .    ....+...+...        |++++|..+|+++     ..  ..|+        ..++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~-----l~--~~p~~~~~~~~~~~~~  246 (537)
T 3fp2_A          174 FDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL-----LS--ANTVDDPLRENAALAL  246 (537)
T ss_dssp             SCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH-----HC----CCCHHHHHHHHHHH
T ss_pred             cChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-----HH--HCCCcchhhHHHHHHH
Confidence                             1    112222222211        4788999999886     22  2333        2356


Q ss_pred             HHHHHHHHhcCCcccHHHHhhccC--CCCcchHHHHHHHHHhCc--hHHHHHHHhhhc---CCcchHHHHHHhhcCccch
Q 036356          178 TVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS---NEENEYGTALDCSCDLEFL  250 (462)
Q Consensus       178 ~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~  250 (462)
                      ..+...+...|++++|...|++..  .|+...|..+...+...|  ++|...|++...   .+..++..+...+...|++
T Consensus       247 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  326 (537)
T 3fp2_A          247 CYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDY  326 (537)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Confidence            777788899999999999999876  356667777788888888  999999999988   4567888899999999999


Q ss_pred             hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHH
Q 036356          251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV  330 (462)
Q Consensus       251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  330 (462)
                      ++|...++.+.+...                 .+...|..+...|...|++++|...|.+.+     ... +.+...+..
T Consensus       327 ~~A~~~~~~a~~~~~-----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-----~~~-~~~~~~~~~  383 (537)
T 3fp2_A          327 KNAKEDFQKAQSLNP-----------------ENVYPYIQLACLLYKQGKFTESEAFFNETK-----LKF-PTLPEVPTF  383 (537)
T ss_dssp             HHHHHHHHHHHHHCT-----------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHC-TTCTHHHHH
T ss_pred             HHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HhC-CCChHHHHH
Confidence            999999999998752                 456789999999999999999999999853     222 334678888


Q ss_pred             HHHHHHhcCCcchHHHHhccCCC--C-Cccc------hHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCC-
Q 036356          331 LIDMYAKCGSVDLAPMFFDRTLD--K-DVVM------RSAMTVGYGLH----------GLGEEGWVLFHHIRKHGIEPR-  390 (462)
Q Consensus       331 li~~~~~~g~~~~A~~~~~~~~~--~-~~~~------~~~li~~~~~~----------~~~~~a~~~~~~m~~~g~~p~-  390 (462)
                      +...|...|++++|...|+++.+  | +...      +..+...+...          |++++|...|++..+  ..|+ 
T Consensus       384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~  461 (537)
T 3fp2_A          384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE--LDPRS  461 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH--HCTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH--hCCCC
Confidence            99999999999999999998763  1 2222      33445677777          999999999999998  5565 


Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036356          391 HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR  422 (462)
Q Consensus       391 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~  422 (462)
                      ...+..+...|.+.|++++|.+.+++. .+.|+
T Consensus       462 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          462 EQAKIGLAQLKLQMEKIDEAIELFEDSAILART  494 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            778999999999999999999999998 33444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.77  E-value=1.3e-16  Score=147.85  Aligned_cols=303  Identities=11%  Similarity=-0.010  Sum_probs=202.1

Q ss_pred             cchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhh
Q 036356           83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD  162 (462)
Q Consensus        83 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  162 (462)
                      ...+..+...+...|++++|...|+++.+..+                 .+..++..+...+...|++++|...|++.  
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--   63 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-----------------DNYIAYYRRATVFLAMGKSKAALPDLTKV--   63 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----------------ccHHHHHHHHHHHHHccCHHHHHHHHHHH--
Confidence            34566777777888888888888888887754                 56677888888888888888888888886  


Q ss_pred             hhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCc------chHHHH------------HHHHHhCc--hHH
Q 036356          163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV------VMRSAM------------IVGYGLHE--WSA  222 (462)
Q Consensus       163 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------~~~~~l------------i~~~~~~~--~~a  222 (462)
                         ... .+.+...+..+...|...|++++|...|++..+.++      ..+..+            ...+...|  ++|
T Consensus        64 ---~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A  139 (359)
T 3ieg_A           64 ---IAL-KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAA  139 (359)
T ss_dssp             ---HHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ---HHh-CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence               222 223456777888888888888888888887754322      223222            24455555  777


Q ss_pred             HHHHHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCC
Q 036356          223 FGSFDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG  299 (462)
Q Consensus       223 ~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~  299 (462)
                      ...+++...   .+...+..+..++...|++++|...++.+.+..                 +.+...|..+...+...|
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~la~~~~~~~  202 (359)
T 3ieg_A          140 ITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-----------------SDNTEAFYKISTLYYQLG  202 (359)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------------SCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcC
Confidence            777777666   345566667777777788888887777777653                 245667777777777778


Q ss_pred             ChhHHHHHhhHHHHHHHHhhCCCCc-hhHHH------------HHHHHHHhcCCcchHHHHhccCCC--CCcc-----ch
Q 036356          300 YAEEAVKLFPKWMDYYIGKSEYRNN-VIVNT------------VLIDMYAKCGSVDLAPMFFDRTLD--KDVV-----MR  359 (462)
Q Consensus       300 ~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~--~~~~-----~~  359 (462)
                      ++++|...|.+.+     ..  .|+ ...+.            .+...+.+.|++++|...+++..+  |+..     .+
T Consensus       203 ~~~~A~~~~~~a~-----~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  275 (359)
T 3ieg_A          203 DHELSLSEVRECL-----KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSK  275 (359)
T ss_dssp             CHHHHHHHHHHHH-----HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             CHHHHHHHHHHHH-----hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            8888887777743     21  122 22222            224557777777777777776652  3321     23


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 036356          360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLSAWK  434 (462)
Q Consensus       360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~  434 (462)
                      ..+...+...|++++|.+.+++..+  ..| +..+|..+...+...|++++|.+.+++. ...|+ ...+..+..+..
T Consensus       276 ~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          276 ERICHCFSKDEKPVEAIRICSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            4466677777788888887777777  345 3667777777777788888888877776 55554 444454444433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.77  E-value=2.2e-16  Score=144.63  Aligned_cols=287  Identities=10%  Similarity=-0.051  Sum_probs=198.1

Q ss_pred             cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 036356           79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP  158 (462)
Q Consensus        79 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  158 (462)
                      .+.+...+..+...+...|++++|..+++++.+..+                 .+...+..++..+...|++++|..+++
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~   80 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-----------------FHASCLPVHIGTLVELNKANELFYLSH   80 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCTTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------CChhhHHHHHHHHHHhhhHHHHHHHHH
Confidence            445566677777777777888888888888877654                 455666667777778888888888888


Q ss_pred             HhhhhhhhhcCCCCCchHHHHHHHHHHhcC-CcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchH
Q 036356          159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCG-SVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEY  237 (462)
Q Consensus       159 ~m~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~  237 (462)
                      +.     ... .+.+..++..+...+...| ++++|...|++..+.+.                          .+...+
T Consensus        81 ~~-----~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------~~~~~~  128 (330)
T 3hym_B           81 KL-----VDL-YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK--------------------------TYGPAW  128 (330)
T ss_dssp             HH-----HHH-CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT--------------------------TCTHHH
T ss_pred             HH-----HHh-CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--------------------------ccHHHH
Confidence            76     222 2335667777777777777 77777777776553221                          122334


Q ss_pred             HHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHH
Q 036356          238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG  317 (462)
Q Consensus       238 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  317 (462)
                      ..+..++...|++++|...++.+.+...                 .+...+..+...|...|++++|...+.+.+     
T Consensus       129 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-----  186 (330)
T 3hym_B          129 IAYGHSFAVESEHDQAMAAYFTAAQLMK-----------------GCHLPMLYIGLEYGLTNNSKLAERFFSQAL-----  186 (330)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTT-----------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhcc-----------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----
Confidence            4555556666777777777777666532                 344556666777777777777777777632     


Q ss_pred             hhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC------------CCccchHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036356          318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD------------KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH  385 (462)
Q Consensus       318 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  385 (462)
                      .. .+.+...+..+...|...|++++|...|++..+            .+..+|..+...|...|++++|...+++..+ 
T Consensus       187 ~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-  264 (330)
T 3hym_B          187 SI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV-  264 (330)
T ss_dssp             TT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             Hh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence            21 123456677777777777777777777765541            2345788888999999999999999999888 


Q ss_pred             CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HccCCh
Q 036356          386 GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAW-KIPMQQ  439 (462)
Q Consensus       386 g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~-~~~~~~  439 (462)
                       ..|+ ...|..+...+.+.|++++|.+.+++. .+.| +...+..+..++ ...|+.
T Consensus       265 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          265 -LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             -HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred             -hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence             4454 678888999999999999999999998 5666 566777777777 445553

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.76  E-value=7.6e-19  Score=174.13  Aligned_cols=111  Identities=15%  Similarity=0.149  Sum_probs=67.8

Q ss_pred             hhHHHHHHHHHHhcCCcchHHHHhccCC-------CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 036356          325 VIVNTVLIDMYAKCGSVDLAPMFFDRTL-------DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARV  397 (462)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  397 (462)
                      ..|||+||++||+.|++++|.++|++|.       .||++|||+||.+||+.|++++|.++|++|.+.|+.||..||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            4456666666666666666666664432       356666666666666666666666666666666666666666666


Q ss_pred             HHHHHhcCCh-HHHHHHHHhC---CCCCCHHHHHHHHHHHHc
Q 036356          398 VDLLARAGYS-NHAFKFIMNM---PIELRLSVRRALLSAWKI  435 (462)
Q Consensus       398 i~~~~~~g~~-~~A~~~~~~m---~~~p~~~~~~~l~~~~~~  435 (462)
                      |+++++.|+. ++|.++|++|   |+.||..+|++++.++.+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR  248 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR  248 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence            6666666653 5566666666   666666666666654443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.75  E-value=5.9e-17  Score=150.14  Aligned_cols=294  Identities=13%  Similarity=0.010  Sum_probs=237.2

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +...|++++|+..|+.+   .+.+..++..+..++...|++++|...++++.+..+                 .+...|.
T Consensus        13 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~   75 (359)
T 3ieg_A           13 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-----------------DFTAARL   75 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------------CcchHHH
Confidence            78899999999999999   445577899999999999999999999999998865                 4668899


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCC----CchHHHHH------------HHHHHhcCCcccHHHHhhccC-
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN----NVIVNTVL------------IDMYAKCGSVDLAPMFFDRTL-  201 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~----~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~-  201 (462)
                      .+...+...|++++|...|++.     ..  ..|    +...+..+            ...+...|++++|...+++.. 
T Consensus        76 ~l~~~~~~~~~~~~A~~~~~~~-----~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  148 (359)
T 3ieg_A           76 QRGHLLLKQGKLDEAEDDFKKV-----LK--SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE  148 (359)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHH-----HT--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHH-----Hh--cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            9999999999999999999996     22  233    34444444            578899999999999999875 


Q ss_pred             --CCCcchHHHHHHHHHhCc--hHHHHHHHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHH
Q 036356          202 --DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS  274 (462)
Q Consensus       202 --~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  274 (462)
                        ..+...+..+...+...|  ++|...+++...   .+...+..+...+...|++++|...++...+...         
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---------  219 (359)
T 3ieg_A          149 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ---------  219 (359)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------
T ss_pred             hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---------
Confidence              345677888888898888  999999999988   4567888899999999999999999999988652         


Q ss_pred             HHHhhcCCCCHhHHH------------HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCC-Cc--hhHHHHHHHHHHhcC
Q 036356          275 LTAVCRYQPNVTLWN------------AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR-NN--VIVNTVLIDMYAKCG  339 (462)
Q Consensus       275 l~~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-p~--~~~~~~li~~~~~~g  339 (462)
                              .+...+.            .+...+.+.|++++|...+.+.+     ..... +.  ...+..+...|.+.|
T Consensus       220 --------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~~  286 (359)
T 3ieg_A          220 --------DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM-----KTEPSVAEYTVRSKERICHCFSKDE  286 (359)
T ss_dssp             --------TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHCCSSHHHHHHHHHHHHHHHHHTT
T ss_pred             --------cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----hcCCCchHHHHHHHHHHHHHHHHcc
Confidence                    2222222            33667899999999999999853     22221 11  133556778999999


Q ss_pred             CcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHh
Q 036356          340 SVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLAR  403 (462)
Q Consensus       340 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~  403 (462)
                      ++++|...+++..+  | +..+|..+...|...|++++|.+.|++..+  +.|+ ...+..+..+...
T Consensus       287 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          287 KPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRL  352 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHH
Confidence            99999999998763  4 677889999999999999999999999998  7787 4556666555443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.75  E-value=4.2e-19  Score=175.94  Aligned_cols=150  Identities=10%  Similarity=-0.009  Sum_probs=123.6

Q ss_pred             CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC----CCCccch
Q 036356          284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL----DKDVVMR  359 (462)
Q Consensus       284 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~  359 (462)
                      -..|||++|++|++.|++++|.++|.+|..  |...|+.||+.|||+||++||+.|++++|.++|++|.    .||++||
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~--m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHG--QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--SHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            456899999999999999999999988432  3457899999999999999999999999999999997    5999999


Q ss_pred             HHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC------HHHHHHHHHH
Q 036356          360 SAMTVGYGLHGLG-EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELR------LSVRRALLSA  432 (462)
Q Consensus       360 ~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~------~~~~~~l~~~  432 (462)
                      |+||.++|+.|+. ++|.++|++|.+.|+.||..+|++++.+..+.+-++.+.++..+  +.|+      ..+...|..-
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~--f~p~~~~~~~~~t~~LL~dl  281 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT--FSLPPQLPPPVNTSKLLRDV  281 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC--CCCCCCCCCCCCCCTTTHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcc--cCCCCCCcccccchHHHHHH
Confidence            9999999999985 78999999999999999999999999888876544444444333  3332      3344455555


Q ss_pred             HHccC
Q 036356          433 WKIPM  437 (462)
Q Consensus       433 ~~~~~  437 (462)
                      |.+.+
T Consensus       282 ~s~d~  286 (1134)
T 3spa_A          282 YAKDG  286 (1134)
T ss_dssp             HCCCS
T ss_pred             HccCC
Confidence            55544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.73  E-value=2.6e-17  Score=151.46  Aligned_cols=284  Identities=12%  Similarity=0.003  Sum_probs=120.8

Q ss_pred             hccCCChhhHHHHHHhhcCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHH
Q 036356           62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMI  141 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li  141 (462)
                      ..+.|+.++|.++++++..  ..+|..+..++.+.|++++|.+.|.+                      .+|..+|..++
T Consensus        13 l~~~~~ld~A~~fae~~~~--~~vWs~La~A~l~~g~~~eAIdsfik----------------------a~D~~~y~~V~   68 (449)
T 1b89_A           13 IEHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIK----------------------ADDPSSYMEVV   68 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHccCHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCHHHHHHHHHc----------------------CCCHHHHHHHH
Confidence            5566778888888888833  34888888888888888888888853                      25666888888


Q ss_pred             HHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc--
Q 036356          142 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--  219 (462)
Q Consensus       142 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~--  219 (462)
                      .++...|++++|+++++..     .+  ..++..+.+.++.+|.+.|+++++.++++.   |+..+|+.+...|...|  
T Consensus        69 ~~ae~~g~~EeAi~yl~~a-----rk--~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~y  138 (449)
T 1b89_A           69 QAANTSGNWEELVKYLQMA-----RK--KARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMY  138 (449)
T ss_dssp             -----------------------------------------------CHHHHTTTTTC---C----------------CT
T ss_pred             HHHHhCCCHHHHHHHHHHH-----HH--hCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCH
Confidence            8888888888888866654     22  245567788888888888888888888764   66778888888888888  


Q ss_pred             hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCC
Q 036356          220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG  299 (462)
Q Consensus       220 ~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~  299 (462)
                      ++|...|..+     ..|..+..++.+.|++++|.+.+..+                      .++.+|..++.+|...|
T Consensus       139 eeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA----------------------~~~~~Wk~v~~aCv~~~  191 (449)
T 1b89_A          139 DAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA----------------------NSTRTWKEVCFACVDGK  191 (449)
T ss_dssp             TTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH----------------------TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc----------------------CCchhHHHHHHHHHHcC
Confidence            8888888877     47888888888888888888888876                      36778888888888888


Q ss_pred             ChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHH
Q 036356          300 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGW  376 (462)
Q Consensus       300 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~  376 (462)
                      +++.|......          +..++.....++..|.+.|++++|..+++....   .....|+-|..+|++- ++++..
T Consensus       192 ef~lA~~~~l~----------L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~  260 (449)
T 1b89_A          192 EFRLAQMCGLH----------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMR  260 (449)
T ss_dssp             CHHHHHHTTTT----------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHH
T ss_pred             cHHHHHHHHHH----------HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHH
Confidence            88888655543          222333344677888888888888888887653   3444667776666654 334444


Q ss_pred             HHHHHHHHC-CCCC------CHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          377 VLFHHIRKH-GIEP------RHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       377 ~~~~~m~~~-g~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +.++...++ +++|      +...|..++..|...++++.|....-+-
T Consensus       261 ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          261 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             HHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence            444433333 4555      3567888888888888888887655443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.72  E-value=5e-16  Score=142.19  Aligned_cols=278  Identities=11%  Similarity=-0.076  Sum_probs=214.8

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +...|++++|+++|+++   .+.+...+..++.++...|++++|..+++++.+..+                 .+...|.
T Consensus        32 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~   94 (330)
T 3hym_B           32 HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-----------------SNPVSWF   94 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------TSTHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-----------------CCHHHHH
Confidence            77789999999999999   445567788888999999999999999999998865                 5778899


Q ss_pred             HHHHHHHhCC-ChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHh
Q 036356          139 AMISGYAKNG-YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL  217 (462)
Q Consensus       139 ~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~  217 (462)
                      .+...+...| ++++|.+.|++.     ... .+.+...|..+...|...|++++|...+++..+.+.            
T Consensus        95 ~l~~~~~~~~~~~~~A~~~~~~a-----~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------  156 (330)
T 3hym_B           95 AVGCYYLMVGHKNEHARRYLSKA-----TTL-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK------------  156 (330)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHH-----HTT-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT------------
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHH-----HHh-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc------------
Confidence            9999999999 999999999996     322 234577888899999999999999999887653211            


Q ss_pred             CchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc
Q 036356          218 HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK  297 (462)
Q Consensus       218 ~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~  297 (462)
                                    .+...+..+...+...|++++|...++...+..                 +.+...+..+...+..
T Consensus       157 --------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----------------~~~~~~~~~l~~~~~~  205 (330)
T 3hym_B          157 --------------GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-----------------PEDPFVMHEVGVVAFQ  205 (330)
T ss_dssp             --------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------------TTCHHHHHHHHHHHHH
T ss_pred             --------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-----------------CCChHHHHHHHHHHHH
Confidence                          122334445666777888888888888887754                 2466778888888999


Q ss_pred             CCChhHHHHHhhHHHHHHHHhhC---CCCchhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCC
Q 036356          298 NGYAEEAVKLFPKWMDYYIGKSE---YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGL  371 (462)
Q Consensus       298 ~~~~~~a~~~~~~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~  371 (462)
                      .|++++|...+.+.+...-...+   ...+..++..+...|.+.|++++|...|++..   ..+...|..+...|...|+
T Consensus       206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  285 (330)
T 3hym_B          206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN  285 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred             cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence            99999999998885431100001   13345788888889999999999999998775   2466778888999999999


Q ss_pred             hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHH-HhcCCh
Q 036356          372 GEEGWVLFHHIRKHGIEPR-HQHYARVVDLL-ARAGYS  407 (462)
Q Consensus       372 ~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~-~~~g~~  407 (462)
                      +++|.+.+++..+  +.|+ ...+..+..++ ...|+.
T Consensus       286 ~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          286 FENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCch
Confidence            9999999998887  6675 66777777777 344544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.72  E-value=1.5e-16  Score=148.26  Aligned_cols=293  Identities=11%  Similarity=-0.014  Sum_probs=192.6

Q ss_pred             cCCChhhHHH-HHHhh--cCC-----CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee
Q 036356           64 WSRTEWSAFG-SFDGL--LSN-----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT  135 (462)
Q Consensus        64 ~~~~~~~A~~-~~~~m--~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~  135 (462)
                      ..|++++|++ .|++.  ..|     +...+..+...+.+.|++++|...|+++.+..+                 .+..
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~   99 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-----------------KHME   99 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-----------------TCHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CCHH
Confidence            4578888888 88866  222     356788888999999999999999999998765                 5677


Q ss_pred             eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCc---chHHHHH
Q 036356          136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV---VMRSAMI  212 (462)
Q Consensus       136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~li  212 (462)
                      +|..+...+.+.|++++|.+.|++.     .... +.+..++..+...|...|++++|...++++...++   ..+....
T Consensus       100 ~~~~l~~~~~~~g~~~~A~~~~~~a-----l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  173 (368)
T 1fch_A          100 AWQYLGTTQAENEQELLAISALRRC-----LELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE  173 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH-----HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHH-----HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            8888999999999999999999986     3332 34677888899999999999999999987653221   1111100


Q ss_pred             HHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHH
Q 036356          213 VGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI  292 (462)
Q Consensus       213 ~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li  292 (462)
                      ...   +         ...+. ..+.. +..+...|++++|...++.+.+....               .++..++..+.
T Consensus       174 ~~~---~---------~~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~---------------~~~~~~~~~l~  224 (368)
T 1fch_A          174 EGA---G---------GAGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPT---------------SIDPDVQCGLG  224 (368)
T ss_dssp             -------------------------CT-THHHHHHHHHHHHHHHHHHHHHHSTT---------------SCCHHHHHHHH
T ss_pred             HHh---h---------hhccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcC---------------cccHHHHHHHH
Confidence            000   0         00000 01111 22222678888888888888876421               12577788888


Q ss_pred             HHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhc
Q 036356          293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLH  369 (462)
Q Consensus       293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~  369 (462)
                      ..|.+.|++++|...|.+.+.     . .+.+...|..+...|.+.|++++|...|++..+   .+..+|..+...|.+.
T Consensus       225 ~~~~~~g~~~~A~~~~~~al~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  298 (368)
T 1fch_A          225 VLFNLSGEYDKAVDCFTAALS-----V-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL  298 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-----H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH-----h-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            888888888888888887432     2 122456777777777777777777777776652   3455667777777777


Q ss_pred             CChHHHHHHHHHHHHCCCCCC------------HhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356          370 GLGEEGWVLFHHIRKHGIEPR------------HQHYARVVDLLARAGYSNHAFKFIMN  416 (462)
Q Consensus       370 ~~~~~a~~~~~~m~~~g~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~  416 (462)
                      |++++|...|++..+.  .|+            ..+|..+..+|...|++++|..++++
T Consensus       299 g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          299 GAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             TCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence            7777777777776662  222            45677777777777777777766654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.72  E-value=8.6e-17  Score=149.84  Aligned_cols=270  Identities=11%  Similarity=-0.061  Sum_probs=187.2

Q ss_pred             CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356           82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM  161 (462)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  161 (462)
                      +...+..+...+.+.|++++|..+|+++.+..+                 .+..+|..+...+.+.|++++|+..|++. 
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-  125 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-----------------GDAEAWQFLGITQAENENEQAAIVALQRC-  125 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH-
Confidence            456688899999999999999999999998865                 67788999999999999999999999996 


Q ss_pred             hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcc---hHHHHHHHHHhCchHHHHHHHhhhcCCcchHH
Q 036356          162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV---MRSAMIVGYGLHEWSAFGSFDGLLSNEENEYG  238 (462)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~  238 (462)
                          ... .+.+..++..+..+|.+.|++++|...|++..+.++.   .+..+.                   .....+.
T Consensus       126 ----l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-------------------~~~~~~~  181 (365)
T 4eqf_A          126 ----LEL-QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK-------------------GSPGLTR  181 (365)
T ss_dssp             ----HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------------------
T ss_pred             ----Hhc-CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc-------------------cchHHHH
Confidence                332 2345778899999999999999999999887642211   111100                   1123345


Q ss_pred             HHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHh
Q 036356          239 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGK  318 (462)
Q Consensus       239 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  318 (462)
                      .+...+.+.|++++|...++.+.+....               .++..+|..+...|.+.|++++|...|.+.+.     
T Consensus       182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----  241 (365)
T 4eqf_A          182 RMSKSPVDSSVLEGVKELYLEAAHQNGD---------------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT-----  241 (365)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHSCS---------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhCcC---------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence            5677788889999999999998887521               12677888888889999999999999988432     


Q ss_pred             hCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----
Q 036356          319 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-----  390 (462)
Q Consensus       319 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----  390 (462)
                      .. +.+..+|..+..+|.+.|++++|...|++..+  | +..+|..+...|...|++++|...|++..+.  .|+     
T Consensus       242 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~  318 (365)
T 4eqf_A          242 VR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQ  318 (365)
T ss_dssp             HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC----
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCc
Confidence            21 23456777777777777777777777776552  3 3556666777777777777777777776652  222     


Q ss_pred             --------HhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356          391 --------HQHYARVVDLLARAGYSNHAFKFIMN  416 (462)
Q Consensus       391 --------~~~~~~li~~~~~~g~~~~A~~~~~~  416 (462)
                              ...|..+..++...|+.+.|.++.++
T Consensus       319 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          319 QVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             --------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence                    45566666666666776666666554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.68  E-value=1.2e-16  Score=147.13  Aligned_cols=234  Identities=10%  Similarity=-0.015  Sum_probs=72.5

Q ss_pred             hCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc--hHHH
Q 036356          146 KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAF  223 (462)
Q Consensus       146 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~--~~a~  223 (462)
                      +.|++++|.++++++           ++..+|..+..++.+.|++++|++.|.+  .+|..+|..++.++...|  ++|.
T Consensus        15 ~~~~ld~A~~fae~~-----------~~~~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           15 HIGNLDRAYEFAERC-----------NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhC-----------CChHHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHH
Confidence            667778888887774           2234777788888888888888877755  345556666666666666  6666


Q ss_pred             HHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCCh
Q 036356          224 GSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYA  301 (462)
Q Consensus       224 ~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~  301 (462)
                      ..++...+  ++..+.+.++.+|.+.|+++++.++++                       .|+..+|+.+...|...|++
T Consensus        82 ~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----------------------~pn~~a~~~IGd~~~~~g~y  138 (449)
T 1b89_A           82 KYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-----------------------GPNNAHIQQVGDRCYDEKMY  138 (449)
T ss_dssp             ---------------------------CHHHHTTTTT-----------------------CC----------------CT
T ss_pred             HHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-----------------------CCcHHHHHHHHHHHHHcCCH
Confidence            65554444  445556666666666666666665553                       24555666666666666666


Q ss_pred             hHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHH
Q 036356          302 EEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH  381 (462)
Q Consensus       302 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  381 (462)
                      ++|..+|..     +         ..|..++.++.+.|++++|.+.++++  .++.+|..++.+|...|+++.|......
T Consensus       139 eeA~~~Y~~-----a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~  202 (449)
T 1b89_A          139 DAAKLLYNN-----V---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH  202 (449)
T ss_dssp             TTHHHHHHH-----T---------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred             HHHHHHHHH-----h---------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence            666666665     1         35666666666666666666666666  2566666666666666666666433332


Q ss_pred             HHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHcc
Q 036356          382 IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIP  436 (462)
Q Consensus       382 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~  436 (462)
                           +...+.....++..|.+.|++++|..+++.. +..+ ....|+-|.-.|.+-
T Consensus       203 -----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          203 -----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             -----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             -----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence                 1122223345666666666666666666664 4333 334555554444444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.68  E-value=2.8e-16  Score=146.34  Aligned_cols=266  Identities=12%  Similarity=-0.027  Sum_probs=177.7

Q ss_pred             eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHH
Q 036356          136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY  215 (462)
Q Consensus       136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~  215 (462)
                      .|..+...+.+.|++++|++.|++.     ... .+.+..+|..+..+|.+.|++++|+..|++..+.++          
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~a-----l~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----------  130 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAA-----ILQ-DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP----------  130 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHH-----HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHH-----HHh-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------
Confidence            3455555555555555555555554     111 122344455555555555555555555544332110          


Q ss_pred             HhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 036356          216 GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY  295 (462)
Q Consensus       216 ~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~  295 (462)
                                      .+..++..+..++.+.|++++|...++.+.+..... ...+..+      ......+..+...+
T Consensus       131 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~------~~~~~~~~~l~~~~  187 (365)
T 4eqf_A          131 ----------------NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKY-KYLVKNK------KGSPGLTRRMSKSP  187 (365)
T ss_dssp             ----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-HCC------------------------
T ss_pred             ----------------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccc-hHHHhhh------ccchHHHHHHHHHH
Confidence                            235567777788888899999999999888754110 0000000      01123345567889


Q ss_pred             HcCCChhHHHHHhhHHHHHHHHhhCC-CCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCC
Q 036356          296 AKNGYAEEAVKLFPKWMDYYIGKSEY-RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGL  371 (462)
Q Consensus       296 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~  371 (462)
                      .+.|++++|...|.+.+     .... .++..++..+...|.+.|++++|...|++..+   .+..+|..+..+|...|+
T Consensus       188 ~~~g~~~~A~~~~~~al-----~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  262 (365)
T 4eqf_A          188 VDSSVLEGVKELYLEAA-----HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR  262 (365)
T ss_dssp             -CCHHHHHHHHHHHHHH-----HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhhhhHHHHHHHHHHHH-----HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999953     2222 22678899999999999999999999998763   467789999999999999


Q ss_pred             hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHcc
Q 036356          372 GEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-------------RLSVRRALLSAWKIP  436 (462)
Q Consensus       372 ~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~~~~~l~~~~~~~  436 (462)
                      +++|...|++..+  ..|+ ..+|..+...|.+.|++++|.+.+++. .+.|             +...|..+..++...
T Consensus       263 ~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  340 (365)
T 4eqf_A          263 SEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM  340 (365)
T ss_dssp             HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHc
Confidence            9999999999998  5676 788999999999999999999999987 2122             367899999999999


Q ss_pred             CChHHHHHHHH
Q 036356          437 MQQWENMLQTI  447 (462)
Q Consensus       437 ~~~~~a~~~~~  447 (462)
                      |+.+.+.....
T Consensus       341 g~~~~a~~~~~  351 (365)
T 4eqf_A          341 DQPELFQAANL  351 (365)
T ss_dssp             TCHHHHHHHHT
T ss_pred             CcHHHHHHHHH
Confidence            99987775554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.67  E-value=3.8e-15  Score=136.10  Aligned_cols=272  Identities=10%  Similarity=-0.045  Sum_probs=189.5

Q ss_pred             CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356           82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM  161 (462)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  161 (462)
                      +...+......+...|++++|..+|+++.+..+                 .+..+|..+...+...|++++|.+.|++. 
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-   81 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-----------------EREEAWRSLGLTQAENEKDGLAIIALNHA-   81 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence            344566777777888888888888888887754                 46677888888888888888888888886 


Q ss_pred             hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCC---cchHHHHHHHHHhCchHHHHHHHhhhcCCcchHH
Q 036356          162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD---VVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYG  238 (462)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~  238 (462)
                          ... .+.+..++..+...|...|++++|...+++....+   ...+..+....                |+.....
T Consensus        82 ----~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~  140 (327)
T 3cv0_A           82 ----RML-DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD----------------VDIDDLN  140 (327)
T ss_dssp             ----HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------------------------
T ss_pred             ----Hhc-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH----------------HHHHHHH
Confidence                222 23456777788888888888888888887765321   11121111100                1112222


Q ss_pred             HH-HH-hhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHH
Q 036356          239 TA-LD-CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI  316 (462)
Q Consensus       239 ~l-l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  316 (462)
                      .+ .. .+...|++++|...++.+.+...                 .+...+..+...|.+.|++++|...+.+.+    
T Consensus       141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~----  199 (327)
T 3cv0_A          141 VQSEDFFFAAPNEYRECRTLLHAALEMNP-----------------NDAQLHASLGVLYNLSNNYDSAAANLRRAV----  199 (327)
T ss_dssp             -----CCTTSHHHHHHHHHHHHHHHHHST-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----
T ss_pred             HHHHhHHHHHcccHHHHHHHHHHHHhhCC-----------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHH----
Confidence            22 22 37788999999999999988752                 467888899999999999999999999843    


Q ss_pred             HhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---
Q 036356          317 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR---  390 (462)
Q Consensus       317 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---  390 (462)
                       ... +.+...+..+...|...|++++|...|++..+   .+..+|..+...|...|++++|.+.+++..+.  .|+   
T Consensus       200 -~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~  275 (327)
T 3cv0_A          200 -ELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTT  275 (327)
T ss_dssp             -HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC
T ss_pred             -HhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCcccc
Confidence             221 23466777788888888888888888877652   34566777777888888888888888877763  343   


Q ss_pred             ----------HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          391 ----------HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       391 ----------~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                                ...|..+..++.+.|++++|..++++.
T Consensus       276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          276 PTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             ccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence                      567777777888888888887777654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.67  E-value=1.9e-15  Score=140.75  Aligned_cols=280  Identities=10%  Similarity=-0.043  Sum_probs=156.8

Q ss_pred             cCCCCccchh-hhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhc
Q 036356           22 ALPSLLMGPR-VHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSC   94 (462)
Q Consensus        22 ~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~   94 (462)
                      ..++++.|.. .++...+....       .+..+...+..+   +...|++++|+..|+++   .+.+..++..+..++.
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  109 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEE-------NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA  109 (368)
T ss_dssp             ---------CHHHHCCCCCCSS-------CTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCC-------CcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3455566665 55544433211       011133445444   99999999999999999   4456778999999999


Q ss_pred             CccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCc
Q 036356           95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV  174 (462)
Q Consensus        95 ~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  174 (462)
                      +.|++++|...++++.+..+                 .+..++..+...+...|++++|.+.|++.     .... +.+.
T Consensus       110 ~~g~~~~A~~~~~~al~~~~-----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~-~~~~  166 (368)
T 1fch_A          110 ENEQELLAISALRRCLELKP-----------------DNQTALMALAVSFTNESLQRQACEILRDW-----LRYT-PAYA  166 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHTS-TTTG
T ss_pred             HCcCHHHHHHHHHHHHhcCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhC-cCcH
Confidence            99999999999999999875                 67888999999999999999999999997     3322 2222


Q ss_pred             hHHHHH---------------HHHHHhcCCcccHHHHhhccCC--CCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchH
Q 036356          175 IVNTVL---------------IDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEY  237 (462)
Q Consensus       175 ~~~~~l---------------i~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~  237 (462)
                      ..+..+               +..+...|++++|...|+++.+  |+.                          ++..++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--------------------------~~~~~~  220 (368)
T 1fch_A          167 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS--------------------------IDPDVQ  220 (368)
T ss_dssp             GGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS--------------------------CCHHHH
T ss_pred             HHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc--------------------------ccHHHH
Confidence            222211               2222255555555555554431  110                          013344


Q ss_pred             HHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHH
Q 036356          238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG  317 (462)
Q Consensus       238 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  317 (462)
                      ..+...+.+.|++++|...++.+.+..                 +.+...|..+...+.+.|++++|...|.+.+.    
T Consensus       221 ~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----  279 (368)
T 1fch_A          221 CGLGVLFNLSGEYDKAVDCFTAALSVR-----------------PNDYLLWNKLGATLANGNQSEEAVAAYRRALE----  279 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Confidence            444445555555555555555554432                 12344455555555555555555555554321    


Q ss_pred             hhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-C-----------ccchHHHHHHHHhcCChHHHHHHHH
Q 036356          318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-D-----------VVMRSAMTVGYGLHGLGEEGWVLFH  380 (462)
Q Consensus       318 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-----------~~~~~~li~~~~~~~~~~~a~~~~~  380 (462)
                       . .+.+...+..+..+|.+.|++++|...|++..+  | +           ..+|..+..+|...|++++|..++.
T Consensus       280 -~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          280 -L-QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             -H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             -h-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence             1 123444455555555555555555555554431  1 1           2345555555555555555554443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.64  E-value=2.9e-13  Score=131.17  Aligned_cols=343  Identities=10%  Similarity=-0.025  Sum_probs=268.2

Q ss_pred             Cceeehhh---hcc----CCChhhHHHHHHhh-cCCCcchHHHHHHhhcC----ccchhhHHHHHHHHHHhcCCcchhHH
Q 036356           54 TIVFLDLY---HLW----SRTEWSAFGSFDGL-LSNEENEYGTALDCSCD----LEFLEQGKIVHGFMIKLGLELESDLL  121 (462)
Q Consensus        54 ~~~~~~~~---~~~----~~~~~~A~~~~~~m-~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~l  121 (462)
                      +...+..+   |..    .+++++|+..|++. ..-+...+..+...+..    .+++++|...|++..+.|.       
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------  110 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL-------  110 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-------
Confidence            44444444   444    78999999999998 55667788888888877    8899999999999987654       


Q ss_pred             HHHhhhcCCCCCeeeHHHHHHHHHh----CCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHh----cCCcccH
Q 036356          122 ISLTAVCRYQPNVTLRNAMISGYAK----NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CGSVDLA  193 (462)
Q Consensus       122 ~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a  193 (462)
                                  ...+..|...|..    .+++++|++.|++-     ...|   +...+..|...|..    .++.++|
T Consensus       111 ------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a-----~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A  170 (490)
T 2xm6_A          111 ------------PQAQQNLGVMYHEGNGVKVDKAESVKWFRLA-----AEQG---RDSGQQSMGDAYFEGDGVTRDYVMA  170 (490)
T ss_dssp             ------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-----HHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             ------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-----HHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence                        5566777778887    78999999999996     4444   46677778888887    7899999


Q ss_pred             HHHhhccCC-CCcchHHHHHHHHHh----Cc--hHHHHHHHhhhc-CCcchHHHHHHhhcC----ccchhhhHHHHHHHH
Q 036356          194 PMFFDRTLD-KDVVMRSAMIVGYGL----HE--WSAFGSFDGLLS-NEENEYGTALDCSCD----LEFLEQGKIVHGFMI  261 (462)
Q Consensus       194 ~~~~~~m~~-~~~~~~~~li~~~~~----~~--~~a~~~~~~m~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~  261 (462)
                      .+.|++..+ .+...+..+...|..    .+  ++|+.+|++... .+...+..+...+..    .++.++|...|+...
T Consensus       171 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~  250 (490)
T 2xm6_A          171 REWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA  250 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            999987653 466677777777775    44  999999998877 666677777777764    789999999999988


Q ss_pred             HhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc----CCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh
Q 036356          262 KLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK----NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK  337 (462)
Q Consensus       262 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~  337 (462)
                      +.|                   +...+..+-..|..    .++.++|...|++.     .+.|   +...+..+...|..
T Consensus       251 ~~~-------------------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a-----~~~~---~~~a~~~Lg~~y~~  303 (490)
T 2xm6_A          251 EQG-------------------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKS-----AEQG---NSDGQYYLAHLYDK  303 (490)
T ss_dssp             TTT-------------------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH-----HTTT---CHHHHHHHHHHHHH
T ss_pred             HCC-------------------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH-----HHcC---CHHHHHHHHHHHHc
Confidence            754                   34556666666776    88999999999883     3333   45566677788887


Q ss_pred             c-----CCcchHHHHhccCCC-CCccchHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----c
Q 036356          338 C-----GSVDLAPMFFDRTLD-KDVVMRSAMTVGYGLHG---LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR----A  404 (462)
Q Consensus       338 ~-----g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~  404 (462)
                      .     ++.++|...|++..+ .+...+..|...|...|   ++++|.+.|++..+.|   +...+..|...|..    .
T Consensus       304 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~  380 (490)
T 2xm6_A          304 GAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVK  380 (490)
T ss_dssp             CBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred             CCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence            7     899999999988764 45567777888887766   7899999999999853   57788888888888    8


Q ss_pred             CChHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHhhhhcC
Q 036356          405 GYSNHAFKFIMNMPIELRLSVRRALLSAWKI----PMQQWENMLQTIRGIDEG  453 (462)
Q Consensus       405 g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~  453 (462)
                      +++++|.+.+++.--..+...+..|...|..    .++.++|...+.+....+
T Consensus       381 ~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          381 KDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            9999999999988112357778888888887    899999999888877766

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.64  E-value=4.1e-14  Score=138.58  Aligned_cols=381  Identities=9%  Similarity=-0.022  Sum_probs=266.0

Q ss_pred             CCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCCCc
Q 036356            9 NGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSNEE   83 (462)
Q Consensus         9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~~~   83 (462)
                      |...|..++.. .+.|+++.|..+++.+++...           .+...|...   +.+.|++++|..+|++.  ..|+.
T Consensus        12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P-----------~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~   79 (530)
T 2ooe_A           12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFP-----------SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI   79 (530)
T ss_dssp             CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT-----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred             CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence            44567778874 678999999999999998752           244556655   77889999999999999  55777


Q ss_pred             chHHHHHHhh-cCccchhhHHH----HHHHHHHh-cCCcchhHHHHHhhhcCCCC-CeeeHHHHHHHHHh---------C
Q 036356           84 NEYGTALDCS-CDLEFLEQGKI----VHGFMIKL-GLELESDLLISLTAVCRYQP-NVTLRNAMISGYAK---------N  147 (462)
Q Consensus        84 ~~~~~ll~~~-~~~~~~~~a~~----~~~~m~~~-g~~~~~~~l~~~~~~~~~~p-~~~~~~~li~~~~~---------~  147 (462)
                      ..|...+... ...|+++.|.+    +|++.... |.                .| +...|...+....+         .
T Consensus        80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~----------------~~~~~~~w~~~~~~~~~~~~~~~~~~~  143 (530)
T 2ooe_A           80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGM----------------EIMSYQIWVDYINFLKGVEAVGSYAEN  143 (530)
T ss_dssp             HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTT----------------STTCHHHHHHHHHHHHHSCCCSSTTHH
T ss_pred             HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCC----------------CcccHHHHHHHHHHHhcCCCcccHHHH
Confidence            7777776533 34567776665    77766543 54                33 45677777766554         6


Q ss_pred             CChhHHHHHHHHhhhhhhhhcCCCCC---chHHHHHHHHH-------------HhcCCcccHHHHhhc-------cC---
Q 036356          148 GYAEEAVKLFPKWMDYYIGKSEYRNN---VIVNTVLIDMY-------------AKCGSVDLAPMFFDR-------TL---  201 (462)
Q Consensus       148 g~~~~a~~~~~~m~~~~~~~~~~~~~---~~~~~~li~~~-------------~~~g~~~~a~~~~~~-------m~---  201 (462)
                      |+++.|..+|++.     ..  . |+   ...|.......             .+.++++.|..++.+       +.   
T Consensus       144 ~~~~~a~~~y~~a-----l~--~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~  215 (530)
T 2ooe_A          144 QRITAVRRVYQRG-----CV--N-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNA  215 (530)
T ss_dssp             HHHHHHHHHHHHH-----TT--S-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred             hHHHHHHHHHHHH-----Hh--c-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence            8999999999996     33  2 32   23333322211             123456666655543       11   


Q ss_pred             ---CCC--------cchHHHHHHHHHhCc----------hHHHHHHHhhhc--C-CcchHHHHHHhhcC-------ccch
Q 036356          202 ---DKD--------VVMRSAMIVGYGLHE----------WSAFGSFDGLLS--N-EENEYGTALDCSCD-------LEFL  250 (462)
Q Consensus       202 ---~~~--------~~~~~~li~~~~~~~----------~~a~~~~~~m~~--~-~~~~~~~ll~~~~~-------~~~~  250 (462)
                         .|+        ...|...+.....++          ..+..+|++...  | +...|......+.+       .|++
T Consensus       216 ~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~  295 (530)
T 2ooe_A          216 PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM  295 (530)
T ss_dssp             CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccch
Confidence               122        134444443322221          267788888888  5 45566666666654       7888


Q ss_pred             h-------hhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC
Q 036356          251 E-------QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN  323 (462)
Q Consensus       251 ~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p  323 (462)
                      +       +|..+++...+.-.                +.+...|..++..+.+.|++++|..+|++.+     .  ..|
T Consensus       296 ~~a~~~~~~A~~~~~~Al~~~~----------------p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al-----~--~~p  352 (530)
T 2ooe_A          296 NNAKLFSDEAANIYERAISTLL----------------KKNMLLYFAYADYEESRMKYEKVHSIYNRLL-----A--IED  352 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTC----------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----H--SSS
T ss_pred             hhhhhhhHHHHHHHHHHHHHhC----------------cccHHHHHHHHHHHHhcCCHHHHHHHHHHHh-----C--ccc
Confidence            7       89999998876211                2468889999999999999999999999953     3  345


Q ss_pred             c--hhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHH---HHH-HHhcCChHHHHHHHHHHHHCCCCCC-HhHHHH
Q 036356          324 N--VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM---TVG-YGLHGLGEEGWVLFHHIRKHGIEPR-HQHYAR  396 (462)
Q Consensus       324 ~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~-~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~  396 (462)
                      +  ...|..++..+.+.|++++|..+|++..+.+...+...   ... +...|+.++|..+|++..+  ..|+ ...|..
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~--~~p~~~~~~~~  430 (530)
T 2ooe_A          353 IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLA  430 (530)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHTTCHHHHHH
T ss_pred             cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH--HCCCCHHHHHH
Confidence            4  24788889999999999999999998775322222222   212 3368999999999999988  4575 788999


Q ss_pred             HHHHHHhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356          397 VVDLLARAGYSNHAFKFIMNM----PIELR--LSVRRALLSAWKIPMQQWENMLQTIRGI  450 (462)
Q Consensus       397 li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~  450 (462)
                      ++..+.+.|+.++|..+|++.    +..|+  ...|...+......|+.+.+.....+++
T Consensus       431 ~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~  490 (530)
T 2ooe_A          431 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  490 (530)
T ss_dssp             HHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999998    23332  4488888998888999988876665543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.60  E-value=3.9e-14  Score=127.05  Aligned_cols=241  Identities=10%  Similarity=0.006  Sum_probs=138.8

Q ss_pred             HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc-
Q 036356          141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-  219 (462)
Q Consensus       141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~-  219 (462)
                      +......|+++.|+..++..     ......+.......+.++|...|+++.|...++....|+..++..+...+...+ 
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~-----~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~   80 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRV-----KPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSR   80 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHS-----CCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHhc-----ccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCc
Confidence            34556689999999998875     222222223355567889999999999998887754455555555555555555 


Q ss_pred             -hHHHHHHHhhhc----CCc-chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHH
Q 036356          220 -WSAFGSFDGLLS----NEE-NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS  293 (462)
Q Consensus       220 -~~a~~~~~~m~~----~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~  293 (462)
                       ++|++.++++..    |+. ..+..+...+.+.|++++|.+.++.      +                .+...+..+..
T Consensus        81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~----------------~~~~~~~~l~~  138 (291)
T 3mkr_A           81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------G----------------DSLECMAMTVQ  138 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------C----------------CSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------C----------------CCHHHHHHHHH
Confidence             666666666542    332 2333344555666666666666654      1                34555666666


Q ss_pred             HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHH---HHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHH
Q 036356          294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN---TVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYG  367 (462)
Q Consensus       294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~  367 (462)
                      .|.+.|++++|.+.|+++     ....  |+....   ...+..+...|++++|..+|+++.+   .+...|+.+..++.
T Consensus       139 ~~~~~g~~~~A~~~l~~~-----~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~  211 (291)
T 3mkr_A          139 ILLKLDRLDLARKELKKM-----QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM  211 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHH-----HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            666666666666666663     2222  332111   1122333334566666666665542   24445566666666


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHH-HHHHHHhC
Q 036356          368 LHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNH-AFKFIMNM  417 (462)
Q Consensus       368 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~-A~~~~~~m  417 (462)
                      +.|++++|...|++..+  ..|+ ..++..++..+...|+.++ +.++++++
T Consensus       212 ~~g~~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~  261 (291)
T 3mkr_A          212 AQGRWEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL  261 (291)
T ss_dssp             HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            66666666666666665  4454 4556666666666666654 34555554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.60  E-value=2e-14  Score=131.18  Aligned_cols=209  Identities=13%  Similarity=0.084  Sum_probs=128.8

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +...|++++|+.+|+++   .+.+..++..+..++.+.|++++|...++++.+..+                 .+..++.
T Consensus        31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----------------~~~~~~~   93 (327)
T 3cv0_A           31 MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-----------------KDIAVHA   93 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-----------------CCHHHHH
Confidence            88999999999999999   445677888999999999999999999999998865                 5778899


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHH--------------HH-HHHhcCCcccHHHHhhccCC-
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL--------------ID-MYAKCGSVDLAPMFFDRTLD-  202 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~-  202 (462)
                      .+...+...|++++|.+.|++.     .... +.+...+..+              .. .+...|++++|...+++..+ 
T Consensus        94 ~la~~~~~~~~~~~A~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  167 (327)
T 3cv0_A           94 ALAVSHTNEHNANAALASLRAW-----LLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM  167 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH-----HHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH-----HHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh
Confidence            9999999999999999999997     3322 2222233222              11 24455556666666655432 


Q ss_pred             --CCcchHHHHHHHHHhCc--hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHH
Q 036356          203 --KDVVMRSAMIVGYGLHE--WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL  275 (462)
Q Consensus       203 --~~~~~~~~li~~~~~~~--~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  275 (462)
                        .+...+..+...+...|  ++|...+++...  | +...+..+...+.+.|++++|...++.+.+..           
T Consensus       168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------  236 (327)
T 3cv0_A          168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-----------  236 (327)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------
Confidence              23334444444444444  445555544444  2 23344444444444555555555554444432           


Q ss_pred             HHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhH
Q 036356          276 TAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK  310 (462)
Q Consensus       276 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  310 (462)
                            +.+...|..+...|.+.|++++|.+.|++
T Consensus       237 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  265 (327)
T 3cv0_A          237 ------PGYVRVMYNMAVSYSNMSQYDLAAKQLVR  265 (327)
T ss_dssp             ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ------CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                  12334444444444555555555555444

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.59  E-value=5e-13  Score=129.55  Aligned_cols=325  Identities=10%  Similarity=-0.028  Sum_probs=258.0

Q ss_pred             CCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hcc----CCChhhHHHHHHhh-cCCCcchHHHHHHhhc
Q 036356           23 LPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLW----SRTEWSAFGSFDGL-LSNEENEYGTALDCSC   94 (462)
Q Consensus        23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~A~~~~~~m-~~~~~~~~~~ll~~~~   94 (462)
                      .++++.|...++...+.|             +...+..+   |..    .+++++|+..|++. ...+...+..+...+.
T Consensus        56 ~~~~~~A~~~~~~a~~~~-------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~  122 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQG-------------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYH  122 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHCC-------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            677778888888877665             33444444   666    88999999999999 5556777888888877


Q ss_pred             C----ccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHh----CCChhHHHHHHHHhhhhhhh
Q 036356           95 D----LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAK----NGYAEEAVKLFPKWMDYYIG  166 (462)
Q Consensus        95 ~----~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~  166 (462)
                      .    .+++++|...|++..+.|.                   ...+..|...|..    .++.++|++.|++.     .
T Consensus       123 ~g~g~~~~~~~A~~~~~~a~~~~~-------------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a-----~  178 (490)
T 2xm6_A          123 EGNGVKVDKAESVKWFRLAAEQGR-------------------DSGQQSMGDAYFEGDGVTRDYVMAREWYSKA-----A  178 (490)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-----H
T ss_pred             cCCCCCCCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-----H
Confidence            6    7899999999999988654                   5567777777877    78999999999996     4


Q ss_pred             hcCCCCCchHHHHHHHHHHh----cCCcccHHHHhhccCC-CCcchHHHHHHHHHh----Cc--hHHHHHHHhhhc-CCc
Q 036356          167 KSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTLD-KDVVMRSAMIVGYGL----HE--WSAFGSFDGLLS-NEE  234 (462)
Q Consensus       167 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~--~~a~~~~~~m~~-~~~  234 (462)
                      +.|   +...+..+...|..    .++.++|..+|++..+ .+...+..+...|..    .+  ++|..+|++... .+.
T Consensus       179 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~  255 (490)
T 2xm6_A          179 EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS  255 (490)
T ss_dssp             HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH
T ss_pred             HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence            443   67788888889988    8999999999987654 455667777777764    33  999999999887 566


Q ss_pred             chHHHHHHhhcC----ccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcC-----CChhHHH
Q 036356          235 NEYGTALDCSCD----LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKN-----GYAEEAV  305 (462)
Q Consensus       235 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~  305 (462)
                      ..+..+-..+..    .++.++|...|+...+.|                   +...+..+-..|...     ++.++|.
T Consensus       256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-------------------~~~a~~~Lg~~y~~~~~g~~~~~~~A~  316 (490)
T 2xm6_A          256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-------------------NSDGQYYLAHLYDKGAEGVAKNREQAI  316 (490)
T ss_dssp             HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-------------------CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence            666667666665    899999999999988754                   445666677777776     8999999


Q ss_pred             HHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcC---CcchHHHHhccCCC-CCccchHHHHHHHHh----cCChHHHHH
Q 036356          306 KLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG---SVDLAPMFFDRTLD-KDVVMRSAMTVGYGL----HGLGEEGWV  377 (462)
Q Consensus       306 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~  377 (462)
                      ..|.+.     .+.+   +...+..+...|.+.|   +.++|..+|++..+ .+...+..|...|..    .+++++|.+
T Consensus       317 ~~~~~a-----~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~  388 (490)
T 2xm6_A          317 SWYTKS-----AEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAI  388 (490)
T ss_dssp             HHHHHH-----HHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHH-----HhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            999984     3433   3456777777887766   78899999988764 567788889999988    899999999


Q ss_pred             HHHHHHHCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHhC
Q 036356          378 LFHHIRKHGIEPRHQHYARVVDLLAR----AGYSNHAFKFIMNM  417 (462)
Q Consensus       378 ~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m  417 (462)
                      .|++..+.|   +...+..|...|..    .+++++|.+.|++.
T Consensus       389 ~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  429 (490)
T 2xm6_A          389 WMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA  429 (490)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            999999865   46788888888988    89999999999998

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.58  E-value=1.4e-12  Score=133.94  Aligned_cols=322  Identities=12%  Similarity=0.015  Sum_probs=200.0

Q ss_pred             CCceeehhh-hccCCChhhHHHHHHhh-cCC-----CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHh
Q 036356           53 RTIVFLDLY-HLWSRTEWSAFGSFDGL-LSN-----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT  125 (462)
Q Consensus        53 ~~~~~~~~~-~~~~~~~~~A~~~~~~m-~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~  125 (462)
                      |+.++...- |...|.+.+|++++++. ..|     +....+.++.+..+. +..+..++.+++..              
T Consensus       985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------------- 1049 (1630)
T 1xi4_A          985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------------- 1049 (1630)
T ss_pred             HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--------------
Confidence            555555555 88888999999999888 222     335566677666666 55666666655442              


Q ss_pred             hhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCc
Q 036356          126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV  205 (462)
Q Consensus       126 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  205 (462)
                               ....-+...+...|.+++|..+|++.          .-.....+.++.   ..+++++|.++.++...  .
T Consensus      1050 ---------~d~~eIA~Iai~lglyEEAf~IYkKa----------~~~~~A~~VLie---~i~nldrAiE~Aervn~--p 1105 (1630)
T 1xi4_A         1050 ---------YDAPDIANIAISNELFEEAFAIFRKF----------DVNTSAVQVLIE---HIGNLDRAYEFAERCNE--P 1105 (1630)
T ss_pred             ---------ccHHHHHHHHHhCCCHHHHHHHHHHc----------CCHHHHHHHHHH---HHhhHHHHHHHHHhcCC--H
Confidence                     22344777888899999999999883          111222233322   67888898888887643  5


Q ss_pred             chHHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHh-----
Q 036356          206 VMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-----  278 (462)
Q Consensus       206 ~~~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----  278 (462)
                      .+|..+-.++...|  ++|++.|.+.  .|...|..++.+|.+.|++++|.+.+....+..-.+...+.....-+     
T Consensus      1106 ~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A         1106 AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL 1183 (1630)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCH
Confidence            67888888888888  8888888665  67777888889999999999999998877765422111111000000     


Q ss_pred             -----hcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC
Q 036356          279 -----CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD  353 (462)
Q Consensus       279 -----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  353 (462)
                           +-..++...|..+...|...|++++|..+|..              ...|..+...|.+.|++++|.+.+++.  
T Consensus      1184 eele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k--------------A~ny~rLA~tLvkLge~q~AIEaarKA-- 1247 (1630)
T 1xi4_A         1184 AELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN--------------VSNFGRLASTLVHLGEYQAAVDGARKA-- 1247 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHh--------------hhHHHHHHHHHHHhCCHHHHHHHHHHh--
Confidence                 00234444455555555556666666666554              125555666666666666666666544  


Q ss_pred             CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 036356          354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLS  431 (462)
Q Consensus       354 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~  431 (462)
                      .+..+|..+-.+|...|++..|......     +..+...+..++.-|.+.|.+++|+++++.. ++.|. ...|+-|..
T Consensus      1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A         1248 NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred             CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence            3345555556666666665555544332     2234556667777788888888888888665 54443 235544555


Q ss_pred             HHHcc
Q 036356          432 AWKIP  436 (462)
Q Consensus       432 ~~~~~  436 (462)
                      .|.+.
T Consensus      1323 LyaKy 1327 (1630)
T 1xi4_A         1323 LYSKF 1327 (1630)
T ss_pred             HHHhC
Confidence            54444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.55  E-value=2.1e-12  Score=126.45  Aligned_cols=353  Identities=8%  Similarity=0.005  Sum_probs=245.5

Q ss_pred             Cceeehhh--hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhc
Q 036356           54 TIVFLDLY--HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC  128 (462)
Q Consensus        54 ~~~~~~~~--~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~  128 (462)
                      |...|..+  +.+.|++++|..+|+.+   .+.+...|...+..+.+.|+++.|..+|+++.+.                
T Consensus        12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~----------------   75 (530)
T 2ooe_A           12 DLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK----------------   75 (530)
T ss_dssp             CHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT----------------
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------------
Confidence            55677666  77789999999999999   4556678999999999999999999999999876                


Q ss_pred             CCCCCeeeHHHHHHH-HHhCCChhHHHH----HHHHhhhhhhhhcCCCC-CchHHHHHHHHHHh---------cCCcccH
Q 036356          129 RYQPNVTLRNAMISG-YAKNGYAEEAVK----LFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAK---------CGSVDLA  193 (462)
Q Consensus       129 ~~~p~~~~~~~li~~-~~~~g~~~~a~~----~~~~m~~~~~~~~~~~~-~~~~~~~li~~~~~---------~g~~~~a  193 (462)
                        .|+...|...+.. ....|+.++|.+    +|+..    ....|..| +...|...+....+         .|+++.|
T Consensus        76 --~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~a----l~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a  149 (530)
T 2ooe_A           76 --VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFA----LDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAV  149 (530)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHH----HHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHH
T ss_pred             --CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHH----HHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHH
Confidence              4676677777653 345788887766    66654    23345554 45677777776655         6889999


Q ss_pred             HHHhhccCC-CCc---chHHHHHH---HH--------H--hCc--hHHHHHHHhhhc-------------CCc-------
Q 036356          194 PMFFDRTLD-KDV---VMRSAMIV---GY--------G--LHE--WSAFGSFDGLLS-------------NEE-------  234 (462)
Q Consensus       194 ~~~~~~m~~-~~~---~~~~~li~---~~--------~--~~~--~~a~~~~~~m~~-------------~~~-------  234 (462)
                      ..+|++..+ |+.   ..|.....   .+        .  ..+  ..|..++++...             |+.       
T Consensus       150 ~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~  229 (530)
T 2ooe_A          150 RRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ  229 (530)
T ss_dssp             HHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence            999998764 321   22222111   00        0  111  455555544211             111       


Q ss_pred             -chHHHHHHhhcC----ccch----hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc-------C
Q 036356          235 -NEYGTALDCSCD----LEFL----EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK-------N  298 (462)
Q Consensus       235 -~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~-------~  298 (462)
                       ..|...+.....    .++.    +.+..+|+..++..                 +.+...|......+.+       .
T Consensus       230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-----------------p~~~~~w~~~~~~~~~~~~~~~~~  292 (530)
T 2ooe_A          230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-----------------GHHPDIWYEAAQYLEQSSKLLAEK  292 (530)
T ss_dssp             HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-----------------TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHhchhhhhc
Confidence             223332221111    1122    24556666666642                 2467788888888775       7


Q ss_pred             CChh-------HHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--CCc--cchHHHHHHH
Q 036356          299 GYAE-------EAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDV--VMRSAMTVGY  366 (462)
Q Consensus       299 ~~~~-------~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~  366 (462)
                      |+++       +|..+|++.+     . .+.| +...|..++..+.+.|++++|..+|++..+  |+.  ..|..++..+
T Consensus       293 g~~~~a~~~~~~A~~~~~~Al-----~-~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  366 (530)
T 2ooe_A          293 GDMNNAKLFSDEAANIYERAI-----S-TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA  366 (530)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHT-----T-TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHH
T ss_pred             cchhhhhhhhHHHHHHHHHHH-----H-HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHH
Confidence            9987       8999998832     2 2344 578899999999999999999999998763  432  4788888888


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHH
Q 036356          367 GLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDL-LARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWEN  442 (462)
Q Consensus       367 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a  442 (462)
                      .+.|++++|.++|++..+  ..|+ ...|...... +...|++++|..+|+.. ...| +...|..++..+...|+.++|
T Consensus       367 ~~~~~~~~A~~~~~~Al~--~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~A  444 (530)
T 2ooe_A          367 RRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT  444 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHT--CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHH
T ss_pred             HHhcCHHHHHHHHHHHHh--ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhH
Confidence            999999999999999998  3444 3333332222 34689999999999987 3334 578999999999999999999


Q ss_pred             HHHHHhhhhcC
Q 036356          443 MLQTIRGIDEG  453 (462)
Q Consensus       443 ~~~~~~~~~~~  453 (462)
                      ...+.+.+..+
T Consensus       445 r~~~~~al~~~  455 (530)
T 2ooe_A          445 RVLFERVLTSG  455 (530)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHhcc
Confidence            98888877653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.55  E-value=5.7e-13  Score=119.48  Aligned_cols=241  Identities=9%  Similarity=-0.036  Sum_probs=190.8

Q ss_pred             HHHHhcCCcccHHHHhhccCCCCc----chHHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHH
Q 036356          182 DMYAKCGSVDLAPMFFDRTLDKDV----VMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKI  255 (462)
Q Consensus       182 ~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~  255 (462)
                      +-....|++..|+..+++....++    .....+.++|...|  +.|+..++....|+..++..+...+.+.++.++|.+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~   86 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA   86 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence            345568999999999988765432    23455678898888  889988876533777888899999999999999999


Q ss_pred             HHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHH
Q 036356          256 VHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY  335 (462)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~  335 (462)
                      .++.+...+..|               -+...+..+...+.+.|++++|++.+.+           ..+...+..+...|
T Consensus        87 ~l~~ll~~~~~P---------------~~~~~~~~la~~~~~~g~~~~Al~~l~~-----------~~~~~~~~~l~~~~  140 (291)
T 3mkr_A           87 ELDREMSRSVDV---------------TNTTFLLMAASIYFYDQNPDAALRTLHQ-----------GDSLECMAMTVQIL  140 (291)
T ss_dssp             HHHHHHHSCCCC---------------SCHHHHHHHHHHHHHTTCHHHHHHHHTT-----------CCSHHHHHHHHHHH
T ss_pred             HHHHHHhcccCC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHhC-----------CCCHHHHHHHHHHH
Confidence            999999876431               2456667777899999999999999875           35678899999999


Q ss_pred             HhcCCcchHHHHhccCCC--CCccchHHH----HHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHH
Q 036356          336 AKCGSVDLAPMFFDRTLD--KDVVMRSAM----TVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNH  409 (462)
Q Consensus       336 ~~~g~~~~A~~~~~~~~~--~~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  409 (462)
                      .+.|++++|.+.|+++.+  |+.. ...+    +..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++
T Consensus       141 ~~~g~~~~A~~~l~~~~~~~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~e  218 (291)
T 3mkr_A          141 LKLDRLDLARKELKKMQDQDEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEA  218 (291)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999874  5432 2233    33344558999999999999985 33458899999999999999999


Q ss_pred             HHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHH-HHHHhhh
Q 036356          410 AFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENM-LQTIRGI  450 (462)
Q Consensus       410 A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~  450 (462)
                      |.+.+++. ...| +..++..++..+...|+..++. ..+.+.+
T Consensus       219 A~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~  262 (291)
T 3mkr_A          219 AEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK  262 (291)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999997 4445 6778999999999999997754 4444443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.55  E-value=2.1e-12  Score=132.66  Aligned_cols=358  Identities=9%  Similarity=0.026  Sum_probs=253.6

Q ss_pred             ChHHHHHhhccCCCCccchhhhHhHhhhCchh-------------------hhhhhcCCCCCceeehhh---hccCCChh
Q 036356           12 TPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-------------------CYLFDGLFDRTIVFLDLY---HLWSRTEW   69 (462)
Q Consensus        12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~   69 (462)
                      --+...++|...|...+|.+++++..-.+-.-                   .++.+-....+......+   +...|.++
T Consensus       987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A          987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFE 1066 (1630)
T ss_pred             HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHH
Confidence            34677888999999999999999998443200                   111111111111112222   55566666


Q ss_pred             hHHHHHHhhcCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCC
Q 036356           70 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGY  149 (462)
Q Consensus        70 ~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~  149 (462)
                      +|..+|++.. ......+.++.   ..+++++|.++.++.                      -+..+|..+..++.+.|+
T Consensus      1067 EAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aerv----------------------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A         1067 EAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERC----------------------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred             HHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhc----------------------CCHHHHHHHHHHHHhCCC
Confidence            6666666542 11111122222   345556655555522                      356788899999999999


Q ss_pred             hhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--CCcchHHHHHHHHHhCc-hHHHHHH
Q 036356          150 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMIVGYGLHE-WSAFGSF  226 (462)
Q Consensus       150 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~-~~a~~~~  226 (462)
                      +++|+..|.+           .-|...|..++.++.+.|++++|.++|....+  ++....+.+..+|++.+ -++++-|
T Consensus      1121 ~kEAIdsYiK-----------AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A         1121 VKEAIDSYIK-----------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred             HHHHHHHHHh-----------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH
Confidence            9999999966           25677888899999999999999999976442  34334455888888887 3344444


Q ss_pred             HhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHH
Q 036356          227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVK  306 (462)
Q Consensus       227 ~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  306 (462)
                      -  ..++...|..+...|...|++++|..+|...                         ..|..+...|.+.|++++|.+
T Consensus      1190 I--~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------------------------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A         1190 I--NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------------------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred             H--hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------------------hHHHHHHHHHHHhCCHHHHHH
Confidence            2  2377778888999999999999999999864                         358899999999999999999


Q ss_pred             HhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036356          307 LFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG  386 (462)
Q Consensus       307 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  386 (462)
                      .+++.           .+..+|.-+-.+|...|++..|...... ...+...+..++..|.+.|.+++|+.+++....  
T Consensus      1243 aarKA-----------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~-- 1308 (1630)
T 1xi4_A         1243 GARKA-----------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG-- 1308 (1630)
T ss_pred             HHHHh-----------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--
Confidence            99872           4568898888999999999999988775 334555677899999999999999999977775  


Q ss_pred             CCCC-HhHHHHHHHHHHhc--CChHHHHHHHHhC-CCCC------CHHHHHHHHHHHHccCChHHHHHHHH
Q 036356          387 IEPR-HQHYARVVDLLARA--GYSNHAFKFIMNM-PIEL------RLSVRRALLSAWKIPMQQWENMLQTI  447 (462)
Q Consensus       387 ~~p~-~~~~~~li~~~~~~--g~~~~A~~~~~~m-~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~  447 (462)
                      +.|. ...|+-|...|++.  ++..++.++|..- .+.|      +...|.-++--|.+.|+++.|+..+.
T Consensus      1309 LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A         1309 LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred             cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            5554 45666666666664  4566666666554 4444      46689999999999999999985443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.52  E-value=1.7e-12  Score=125.06  Aligned_cols=340  Identities=12%  Similarity=0.002  Sum_probs=217.6

Q ss_pred             CCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCC-CeeeHHHHHHHHHhCCChhHHHHHHHH
Q 036356           81 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-NVTLRNAMISGYAKNGYAEEAVKLFPK  159 (462)
Q Consensus        81 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~  159 (462)
                      .....||.+...+...|+.++|.+.|++..+.-.....+        . ..| ...+|+.+..+|...|++++|...+++
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~--------~-~~~~~~~~~~nla~~y~~~g~~~~A~~~~~k  119 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD--------Q-AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK  119 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG--------G-CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc--------c-cchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            345579999999999999999999999876531000000        0 023 346799999999999999999999988


Q ss_pred             hhhhhhhhcC-CCC-CchHHHHHHHHHHhc--CCcccHHHHhhccCC--C-CcchHHHHHHHHH---hCc--hHHHHHHH
Q 036356          160 WMDYYIGKSE-YRN-NVIVNTVLIDMYAKC--GSVDLAPMFFDRTLD--K-DVVMRSAMIVGYG---LHE--WSAFGSFD  227 (462)
Q Consensus       160 m~~~~~~~~~-~~~-~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~---~~~--~~a~~~~~  227 (462)
                      .....-...+ ..+ ...++..+..++.+.  +++++|+..|++..+  | +...+..+..++.   ..+  ++|++.++
T Consensus       120 a~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~  199 (472)
T 4g1t_A          120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR  199 (472)
T ss_dssp             HHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred             HHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            6211000011 122 235666666566554  568999999998653  4 3444444444432   333  78888888


Q ss_pred             hhhc--CC-cchHHHHHHh----hcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC
Q 036356          228 GLLS--NE-ENEYGTALDC----SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY  300 (462)
Q Consensus       228 ~m~~--~~-~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~  300 (462)
                      +..+  |+ ...+..+...    ....+++++|.+.++...+...                 .+...+..+...|.+.|+
T Consensus       200 ~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-----------------~~~~~~~~lg~~~~~~~~  262 (472)
T 4g1t_A          200 QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-----------------GVTDVLRSAAKFYRRKDE  262 (472)
T ss_dssp             HHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-----------------SCHHHHHHHHHHHHHTTC
T ss_pred             HHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-----------------cHHHHHHHHHHHHHHcCc
Confidence            8777  54 3444444333    3456788999999999888752                 567789999999999999


Q ss_pred             hhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhc-------------------CCcchHHHHhccCC---CCCcc
Q 036356          301 AEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKC-------------------GSVDLAPMFFDRTL---DKDVV  357 (462)
Q Consensus       301 ~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~~~---~~~~~  357 (462)
                      +++|...+.+.+     +.  .| +..++..+...|...                   +..+.|...|+...   ..+..
T Consensus       263 ~~~A~~~~~~al-----~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  335 (472)
T 4g1t_A          263 PDKAIELLKKAL-----EY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR  335 (472)
T ss_dssp             HHHHHHHHHHHH-----HH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCC
T ss_pred             hHHHHHHHHHHH-----Hh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhh
Confidence            999999999853     22  34 355666665555322                   22456666666554   34677


Q ss_pred             chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--hHHHHHHH-HHHhcCChHHHHHHHHhC-CC--------------
Q 036356          358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--QHYARVVD-LLARAGYSNHAFKFIMNM-PI--------------  419 (462)
Q Consensus       358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m-~~--------------  419 (462)
                      ++..+...|...|++++|.+.|++..+....|..  ..+..+.. .+...|++++|+..+++. .+              
T Consensus       336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l  415 (472)
T 4g1t_A          336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKL  415 (472)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            8899999999999999999999999984433322  12333332 345679999999888765 22              


Q ss_pred             -----------CCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcC
Q 036356          420 -----------ELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEG  453 (462)
Q Consensus       420 -----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  453 (462)
                                 +.+..+|..|...|...|+.++|+..+.+.++.|
T Consensus       416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence                       2345688999999999999999999998887754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.48  E-value=9.5e-13  Score=126.88  Aligned_cols=361  Identities=10%  Similarity=-0.101  Sum_probs=222.0

Q ss_pred             CCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh-------c
Q 036356           10 GCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL-------L   79 (462)
Q Consensus        10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m-------~   79 (462)
                      ...|+.|-..+...|+.++|.+.+++..+.....  .-.........+|+.+   |...|++++|+..+++.       .
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~--~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE--HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--SGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            4458888889999999999999999876542110  0000111234567666   88999999999999887       1


Q ss_pred             ---CC-CcchHHHHHHhhc--CccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHH---HHhCCCh
Q 036356           80 ---SN-EENEYGTALDCSC--DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISG---YAKNGYA  150 (462)
Q Consensus        80 ---~~-~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~---~~~~g~~  150 (462)
                         .+ ...++.....++.  ..+++++|...|++..+..+                 -+...+..+..+   +...++.
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-----------------~~~~~~~~~~~~~~~l~~~~~~  191 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-----------------KNPEFTSGLAIASYRLDNWPPS  191 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-----------------TCHHHHHHHHHHHHHHHHSCCC
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHhcCchHH
Confidence               11 1234555444443  34679999999999998764                 344455544444   4567888


Q ss_pred             hHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHh----cCCcccHHHHhhccC---CCCcchHHHHHHHHHhCc--hH
Q 036356          151 EEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTL---DKDVVMRSAMIVGYGLHE--WS  221 (462)
Q Consensus       151 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~--~~  221 (462)
                      ++|++.|++.     .+. -+.+..++..+...+..    .|++++|.+.+++..   ..+...+..+...|...|  ++
T Consensus       192 ~~al~~~~~a-----l~l-~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~  265 (472)
T 4g1t_A          192 QNAIDPLRQA-----IRL-NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDK  265 (472)
T ss_dssp             CCTHHHHHHH-----HHH-CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHH-----hhc-CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHH
Confidence            8999988874     222 12345556555555554    467889999998754   345567788888888888  99


Q ss_pred             HHHHHHhhhc--CCc-chHHHHHHhhcC-------------------ccchhhhHHHHHHHHHhCCCcchHHHHHHHHhh
Q 036356          222 AFGSFDGLLS--NEE-NEYGTALDCSCD-------------------LEFLEQGKIVHGFMIKLGLELESDLLISLTAVC  279 (462)
Q Consensus       222 a~~~~~~m~~--~~~-~~~~~ll~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  279 (462)
                      |...|++..+  |+. .++..+..++..                   .+..+.|...++...+..               
T Consensus       266 A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---------------  330 (472)
T 4g1t_A          266 AIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN---------------  330 (472)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC---------------
Confidence            9999999888  554 445544444422                   123556666676666654               


Q ss_pred             cCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCch--hHHHHHHH-HHHhcCCcchHHHHhccCCCCCc
Q 036356          280 RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV--IVNTVLID-MYAKCGSVDLAPMFFDRTLDKDV  356 (462)
Q Consensus       280 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~  356 (462)
                        +.+...+..+...|...|++++|+..|++.+     .....+..  ..+..+.. .+...|+.++|...|++..+-+.
T Consensus       331 --~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~  403 (472)
T 4g1t_A          331 --DNLFRVCSILASLHALADQYEEAEYYFQKEF-----SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ  403 (472)
T ss_dssp             --TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH-----HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred             --CchhhhhhhHHHHHHHhccHHHHHHHHHHHH-----hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence              2466778889999999999999999999843     33322221  12222222 23467899999999987653222


Q ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHH
Q 036356          357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM----PIELRLSVR  426 (462)
Q Consensus       357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~  426 (462)
                      .++.       ..+..+.+.++++....  ..|+ ..+|..+...|...|++++|++.|++.    +..|+..+|
T Consensus       404 ~~~~-------~~~~~~~l~~~~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          404 KSRE-------KEKMKDKLQKIAKMRLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW  469 (472)
T ss_dssp             CCHH-------HHHHHHHHHHHHHHHHH--HCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred             ccHH-------HHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence            2221       11223444555665555  3454 789999999999999999999999997    344555544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.42  E-value=1.1e-12  Score=123.50  Aligned_cols=307  Identities=12%  Similarity=0.000  Sum_probs=214.9

Q ss_pred             cchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC----eeeHHHHHHHHHhCCChhHHHHHHH
Q 036356           83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN----VTLRNAMISGYAKNGYAEEAVKLFP  158 (462)
Q Consensus        83 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~  158 (462)
                      ...+......+...|++++|...|++..+.+.                 .+    ..+|..+...+...|++++|...|+
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   71 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT-----------------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHH   71 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-----------------ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            33456677788889999999999999998754                 23    3568888899999999999999998


Q ss_pred             HhhhhhhhhcCCCC-CchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhc--CCcc
Q 036356          159 KWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS--NEEN  235 (462)
Q Consensus       159 ~m~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~--~~~~  235 (462)
                      +.... ....+..| ...++..+...|...|++++|...+++..+.                      ......  ....
T Consensus        72 ~al~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------------~~~~~~~~~~~~  128 (406)
T 3sf4_A           72 HDLTL-ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI----------------------SRELNDKVGEAR  128 (406)
T ss_dssp             HHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------HHHHTCHHHHHH
T ss_pred             HHHHH-HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------HHhcccccchHH
Confidence            86210 11122222 2557788888899999999999888765421                      000000  0122


Q ss_pred             hHHHHHHhhcCccc--------------------hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 036356          236 EYGTALDCSCDLEF--------------------LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY  295 (462)
Q Consensus       236 ~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~  295 (462)
                      ++..+...+...|+                    +++|...+....+..-..+.           ......++..+...|
T Consensus       129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~la~~~  197 (406)
T 3sf4_A          129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGD-----------RAAQGRAFGNLGNTH  197 (406)
T ss_dssp             HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccC-----------cHHHHHHHHHHHHHH
Confidence            45566666777777                    88888888776553111000           001245688888899


Q ss_pred             HcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC-----CC----ccchHHHHHH
Q 036356          296 AKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KD----VVMRSAMTVG  365 (462)
Q Consensus       296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~  365 (462)
                      ...|++++|...+.+.+...- ..+..+ ...++..+...|...|++++|...+++..+     ++    ..++..+...
T Consensus       198 ~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  276 (406)
T 3sf4_A          198 YLLGNFRDAVIAHEQRLLIAK-EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT  276 (406)
T ss_dssp             HHHTBHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH
Confidence            999999999999998764211 111111 244788889999999999999999987652     11    4577888999


Q ss_pred             HHhcCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHH
Q 036356          366 YGLHGLGEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-------PIEL-RLSVRRALLSA  432 (462)
Q Consensus       366 ~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~l~~~  432 (462)
                      |...|++++|.+.+++..+.    +-.+. ..++..+...|...|++++|.+.+++.       +..+ ...++..+...
T Consensus       277 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  356 (406)
T 3sf4_A          277 YTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDL  356 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence            99999999999999988764    11222 567888999999999999999998886       2112 24467778888


Q ss_pred             HHccCChHH
Q 036356          433 WKIPMQQWE  441 (462)
Q Consensus       433 ~~~~~~~~~  441 (462)
                      +...|+...
T Consensus       357 ~~~~g~~~~  365 (406)
T 3sf4_A          357 QMVLGLSYS  365 (406)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHhhHhHH
Confidence            888777644

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.41  E-value=4.8e-12  Score=111.07  Aligned_cols=221  Identities=10%  Similarity=-0.053  Sum_probs=154.1

Q ss_pred             eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcc---hHHHH
Q 036356          135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV---MRSAM  211 (462)
Q Consensus       135 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~l  211 (462)
                      ..|..+...+...|++++|+..|++.     ....  .+..++..+..+|...|++++|...+++..+.+..   .+.. 
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-   77 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKA-----WELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV-   77 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH-
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHH-----HHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH-
Confidence            45777888999999999999999997     4555  77889999999999999999999999876531110   0000 


Q ss_pred             HHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHH
Q 036356          212 IVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM  291 (462)
Q Consensus       212 i~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l  291 (462)
                                           ....+..+..++.+.|++++|...++...+..                  |+.      
T Consensus        78 ---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------~~~------  112 (258)
T 3uq3_A           78 ---------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH------------------RTA------  112 (258)
T ss_dssp             ---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------CCH------
T ss_pred             ---------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC------------------chh------
Confidence                                 02344555666666777777777777776643                  332      


Q ss_pred             HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHh
Q 036356          292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGL  368 (462)
Q Consensus       292 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~  368 (462)
                       ..+.+.|++++|...+.+.+     .. .+.+...+..+...+...|++++|...|++..+   .+..+|..+...|..
T Consensus       113 -~~~~~~~~~~~a~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  185 (258)
T 3uq3_A          113 -DILTKLRNAEKELKKAEAEA-----YV-NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK  185 (258)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHH-----HC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             -HHHHHHhHHHHHHHHHHHHH-----Hc-CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence             23445566777777776632     11 112345666667777777777777777776652   345667777888888


Q ss_pred             cCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          369 HGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       369 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .|++++|...+++..+  ..|+ ...|..+...+.+.|++++|.+.+++.
T Consensus       186 ~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (258)
T 3uq3_A          186 LMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASALETLDAA  233 (258)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8888888888888877  4455 667778888888888888888888776

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.40  E-value=3.1e-12  Score=113.56  Aligned_cols=249  Identities=10%  Similarity=-0.101  Sum_probs=158.1

Q ss_pred             hhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCC
Q 036356           92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR  171 (462)
Q Consensus        92 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  171 (462)
                      .....|++++|...++++.+...  ..+           ..+..+|..+...+...|++++|...|++.     ... .+
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~--~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-----l~~-~~   74 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRA--LTD-----------DERAQLLYERGVLYDSLGLRALARNDFSQA-----LAI-RP   74 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSC--CCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHH-CC
T ss_pred             ccCccchHHHHHHHHHHHHhccc--ccC-----------chhHHHHHHHHHHHHHcccHHHHHHHHHHH-----HHc-CC
Confidence            34566888999999998887632  000           124567888888899999999999999886     332 23


Q ss_pred             CCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchh
Q 036356          172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLE  251 (462)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~  251 (462)
                      .+..+|..+...|...|++++|...|++..+.++                          .+...+..+..++.+.|+++
T Consensus        75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------------------------~~~~~~~~la~~~~~~g~~~  128 (275)
T 1xnf_A           75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP--------------------------TYNYAHLNRGIALYYGGRDK  128 (275)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCTHHHHHHHHHHHHTTCHH
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc--------------------------cccHHHHHHHHHHHHhccHH
Confidence            3577888888889999999998888887653111                          12334455555666667777


Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHH
Q 036356          252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL  331 (462)
Q Consensus       252 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l  331 (462)
                      +|...++.+.+..                  |+.......+..+...|++++|...+.+.+     .. ..++...+. +
T Consensus       129 ~A~~~~~~a~~~~------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-----~~-~~~~~~~~~-~  183 (275)
T 1xnf_A          129 LAQDDLLAFYQDD------------------PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF-----EK-SDKEQWGWN-I  183 (275)
T ss_dssp             HHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH-----HH-SCCCSTHHH-H
T ss_pred             HHHHHHHHHHHhC------------------CCChHHHHHHHHHHHhcCHHHHHHHHHHHH-----hc-CCcchHHHH-H
Confidence            7777777776643                  333333334444455577777777776632     21 122333333 5


Q ss_pred             HHHHHhcCCcchHHHHhccCCCCC-------ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 036356          332 IDMYAKCGSVDLAPMFFDRTLDKD-------VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA  404 (462)
Q Consensus       332 i~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  404 (462)
                      +..+...++.++|...++...+.+       ..+|..+...|...|++++|...|++..+  ..|+.  +.....++...
T Consensus       184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~--~~~~~~~~~~l  259 (275)
T 1xnf_A          184 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN--FVEHRYALLEL  259 (275)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT--CHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh--HHHHHHHHHHH
Confidence            555666666677777777665321       35677778888888888888888888877  45642  22234566677


Q ss_pred             CChHHHHHHH
Q 036356          405 GYSNHAFKFI  414 (462)
Q Consensus       405 g~~~~A~~~~  414 (462)
                      |++++|++.+
T Consensus       260 ~~~~~a~~~~  269 (275)
T 1xnf_A          260 SLLGQDQDDL  269 (275)
T ss_dssp             HHHHHC----
T ss_pred             HHHHhhHHHH
Confidence            7777777654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.40  E-value=5.7e-11  Score=113.49  Aligned_cols=366  Identities=10%  Similarity=0.030  Sum_probs=234.2

Q ss_pred             HHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCCh---hhHHHHHHhhcCCCcchHH
Q 036356           14 PLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTE---WSAFGSFDGLLSNEENEYG   87 (462)
Q Consensus        14 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~A~~~~~~m~~~~~~~~~   87 (462)
                      ..+-..+.+.|++++|..+|+...+.|             +...+..+   +...|++   ++|+..|+.....+...+.
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-------------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~   73 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAELG-------------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQA   73 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT-------------CCTGGGTCC----------------------------CHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCC-------------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHH
Confidence            335566678899999999999998876             33344444   6667888   8999999999333777777


Q ss_pred             HHHHhhcCcc-----chhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhh
Q 036356           88 TALDCSCDLE-----FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD  162 (462)
Q Consensus        88 ~ll~~~~~~~-----~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  162 (462)
                      .+...+...+     ++++|...|++..+.|.                 ++  .+..|...|...+..+.+.+.++.+  
T Consensus        74 ~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-----------------~~--A~~~Lg~~y~~~~~~~~~~~a~~~~--  132 (452)
T 3e4b_A           74 RLGRLLAAKPGATEAEHHEAESLLKKAFANGE-----------------GN--TLIPLAMLYLQYPHSFPNVNAQQQI--  132 (452)
T ss_dssp             HHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-----------------SS--CHHHHHHHHHHCGGGCTTCCHHHHH--
T ss_pred             HHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-----------------HH--HHHHHHHHHHhCCCCCCCHHHHHHH--
Confidence            7777454443     88999999999998776                 33  7777888888776655544444443  


Q ss_pred             hhhhhcCCCCCchHHHHHHHHHHhcCCcccHH----HHhhccCCCCcchHHHHHHHHHhCc-----hHHHHHHHhhhc--
Q 036356          163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP----MFFDRTLDKDVVMRSAMIVGYGLHE-----WSAFGSFDGLLS--  231 (462)
Q Consensus       163 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~----~~~~~m~~~~~~~~~~li~~~~~~~-----~~a~~~~~~m~~--  231 (462)
                         ....-..+...+..|...|...+.++++.    .+++.....+...+..+-..|...|     ++|+..|++...  
T Consensus       133 ---~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g  209 (452)
T 3e4b_A          133 ---SQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG  209 (452)
T ss_dssp             ---HHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred             ---HHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence               11111223566677888888888655544    4555555666668888888887776     788888888877  


Q ss_pred             -CCcchHHHHHHhhcCc----cchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHH-H--HcCCChhH
Q 036356          232 -NEENEYGTALDCSCDL----EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG-Y--AKNGYAEE  303 (462)
Q Consensus       232 -~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~-~--~~~~~~~~  303 (462)
                       ++...+..+...|...    ++.++|...|+... .|                   +...+..+-.. |  ...++.++
T Consensus       210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g-------------------~~~a~~~Lg~~~~~~~~~~d~~~  269 (452)
T 3e4b_A          210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG-------------------YPASWVSLAQLLYDFPELGDVEQ  269 (452)
T ss_dssp             CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG-------------------STHHHHHHHHHHHHSGGGCCHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC-------------------CHHHHHHHHHHHHhCCCCCCHHH
Confidence             3344336666777655    78999999999987 43                   34445555555 3  46899999


Q ss_pred             HHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcC-----CcchHHHHhccCCCCCccchHHHHHHHHh----cCChHH
Q 036356          304 AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG-----SVDLAPMFFDRTLDKDVVMRSAMTVGYGL----HGLGEE  374 (462)
Q Consensus       304 a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~  374 (462)
                      |...|.+     ..+.|   +...+..|...|. .|     +.++|...|++....+...+..|...|..    ..++++
T Consensus       270 A~~~~~~-----Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~  340 (452)
T 3e4b_A          270 MMKYLDN-----GRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQK  340 (452)
T ss_dssp             HHHHHHH-----HHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHH
T ss_pred             HHHHHHH-----HHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHH
Confidence            9999998     44455   5666777777776 55     89999999998883356667777777766    348999


Q ss_pred             HHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356          375 GWVLFHHIRKHGIEPRHQHYARVVDLLAR----AGYSNHAFKFIMNM-P-IELRLSVRRALLSAWKIPMQQWENMLQTIR  448 (462)
Q Consensus       375 a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  448 (462)
                      |.++|++..+.|.   ......|...|..    ..++++|..+++.. . -.++.......+......++..+|.....+
T Consensus       341 A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~  417 (452)
T 3e4b_A          341 ALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQ  417 (452)
T ss_dssp             HHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9999999998764   3445556666654    45899999999987 2 123333333333333344455555555544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.38  E-value=5.8e-11  Score=103.88  Aligned_cols=194  Identities=9%  Similarity=-0.101  Sum_probs=163.1

Q ss_pred             cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356          234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD  313 (462)
Q Consensus       234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  313 (462)
                      ...+..+...+...|++++|...++.+.+..                 +.+...+..+...|...|++++|.+.|.+.+ 
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-   98 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-----------------PSSADAHAALAVVFQTEMEPKLADEEYRKAL-   98 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence            3456677788889999999999999998874                 2467889999999999999999999999853 


Q ss_pred             HHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC----C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036356          314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD----K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE  388 (462)
Q Consensus       314 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  388 (462)
                          ... +.+...+..+...|...|++++|..+|+++.+    | +...+..+...+...|++++|.+.+++..+  ..
T Consensus        99 ----~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~  171 (252)
T 2ho1_A           99 ----ASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--LN  171 (252)
T ss_dssp             ----HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred             ----HHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence                222 23577888899999999999999999998765    2 345677888999999999999999999988  44


Q ss_pred             CC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          389 PR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIE-LRLSVRRALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       389 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      |+ ...+..+...+...|++++|...+++. ... .+...+..+...+...|+.++|...+.+....
T Consensus       172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            54 788999999999999999999999998 433 46778889999999999999999888777654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.37  E-value=2.7e-11  Score=106.02  Aligned_cols=204  Identities=9%  Similarity=-0.082  Sum_probs=152.4

Q ss_pred             chHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhh
Q 036356          174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQG  253 (462)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a  253 (462)
                      ...+..+...+...|++++|...|++..+.+.                          .+...+..+...+...|++++|
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--------------------------~~~~~~~~la~~~~~~~~~~~A   90 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP--------------------------SSADAHAALAVVFQTEMEPKLA   90 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--------------------------ChHHHHHHHHHHHHHcCCHHHH
Confidence            45566666777777777777777766542111                          2334556666777788899999


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHH
Q 036356          254 KIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLI  332 (462)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li  332 (462)
                      .+.++.+.+...                 .+...|..+...|...|++++|.+.|.+.     ...+..| +...+..+.
T Consensus        91 ~~~~~~a~~~~~-----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~~~~~la  148 (252)
T 2ho1_A           91 DEEYRKALASDS-----------------RNARVLNNYGGFLYEQKRYEEAYQRLLEA-----SQDTLYPERSRVFENLG  148 (252)
T ss_dssp             HHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TTCTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHCc-----------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HhCccCcccHHHHHHHH
Confidence            999988887642                 46778888888899999999999999884     2323344 466778888


Q ss_pred             HHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChH
Q 036356          333 DMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSN  408 (462)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~  408 (462)
                      ..|...|++++|...|++..+   .+...+..+...|...|++++|...+++..+  ..|+ ...+..+...+...|+++
T Consensus       149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~  226 (252)
T 2ho1_A          149 LVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRD  226 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHH
Confidence            889999999999999987763   3566788888999999999999999999887  4444 677888888999999999


Q ss_pred             HHHHHHHhC-CCCCCHHHHH
Q 036356          409 HAFKFIMNM-PIELRLSVRR  427 (462)
Q Consensus       409 ~A~~~~~~m-~~~p~~~~~~  427 (462)
                      +|.+.++++ ...|+...+.
T Consensus       227 ~A~~~~~~~~~~~p~~~~~~  246 (252)
T 2ho1_A          227 TAASYGLQLKRLYPGSLEYQ  246 (252)
T ss_dssp             HHHHHHHHHHHHCTTSHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHH
Confidence            999999887 4445544433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.37  E-value=6.6e-12  Score=114.62  Aligned_cols=282  Identities=12%  Similarity=0.007  Sum_probs=168.9

Q ss_pred             hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC----eeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356           85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN----VTLRNAMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus        85 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      .+......+...|++++|...++++.+...                 .+    ...+..+...+...|++++|.+.+++.
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   69 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-----------------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD   69 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCc-----------------ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345556777889999999999999998754                 23    357888899999999999999999886


Q ss_pred             hhhhhhhcCCCC-CchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhc--CCcchH
Q 036356          161 MDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS--NEENEY  237 (462)
Q Consensus       161 ~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~--~~~~~~  237 (462)
                      ... ....+..| ...++..+...|...|++++|...+++..+.                      ......  ....++
T Consensus        70 l~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------------~~~~~~~~~~~~~~  126 (338)
T 3ro2_A           70 LTL-ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI----------------------SRELNDKVGEARAL  126 (338)
T ss_dssp             HHH-HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------HHHTTCHHHHHHHH
T ss_pred             HHH-hhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH----------------------HHHhcCchHHHHHH
Confidence            211 11122222 3567788888999999999999988765421                      000000  001244


Q ss_pred             HHHHHhhcCccc--------------------hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc
Q 036356          238 GTALDCSCDLEF--------------------LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK  297 (462)
Q Consensus       238 ~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~  297 (462)
                      ..+...+...|+                    +++|...++...+.....+.           .......+..+...+..
T Consensus       127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~-----------~~~~~~~~~~l~~~~~~  195 (338)
T 3ro2_A          127 YNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD-----------RAAQGRAFGNLGNTHYL  195 (338)
T ss_dssp             HHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHHH
Confidence            556666667777                    78888877776543110000           00124467778888899


Q ss_pred             CCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-----CC----ccchHHHHHHHHh
Q 036356          298 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KD----VVMRSAMTVGYGL  368 (462)
Q Consensus       298 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~  368 (462)
                      .|++++|...+.+.+...-..........++..+...|...|++++|...+++..+     .+    ..++..+...|..
T Consensus       196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  275 (338)
T 3ro2_A          196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  275 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence            99999999999886542111111111133556666666667777776666665431     11    2344455555555


Q ss_pred             cCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          369 HGLGEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       369 ~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .|++++|...+++..+.    +-.+. ..++..+...|.+.|++++|.+.+++.
T Consensus       276 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  329 (338)
T 3ro2_A          276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  329 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            56666665555554442    11111 224445555555555555555555543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.37  E-value=1.3e-11  Score=105.62  Aligned_cols=191  Identities=12%  Similarity=-0.005  Sum_probs=145.5

Q ss_pred             CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHH
Q 036356          233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM  312 (462)
Q Consensus       233 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  312 (462)
                      +...+..+...+.+.|++++|...|+..++..                 +.+...|..+...+.+.|++++|+..|++.+
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   66 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-----------------PQDPEALYWLARTQLKLGLVNPALENGKTLV   66 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45566777788888999999999999888754                 2467788888889999999999999998843


Q ss_pred             HHHHHhhCCCCchhHHHHHHHHHHhc-----------CCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHH
Q 036356          313 DYYIGKSEYRNNVIVNTVLIDMYAKC-----------GSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVL  378 (462)
Q Consensus       313 ~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~  378 (462)
                           ... +.+...+..+...|...           |++++|...|++..+  | +...|..+...|...|++++|+..
T Consensus        67 -----~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~  140 (217)
T 2pl2_A           67 -----ART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEAS  140 (217)
T ss_dssp             -----HHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -----HhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHH
Confidence                 222 22466788888888888           999999999988763  4 456788888999999999999999


Q ss_pred             HHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356          379 FHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIR  448 (462)
Q Consensus       379 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~  448 (462)
                      |++..+..  .+...+..+..+|...|++++|...+++. ...| +...+..+...+...|+.++|+..+.+
T Consensus       141 ~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          141 LKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999866  67888899999999999999999999988 4344 567888899999999999999876654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.37  E-value=3.5e-12  Score=113.22  Aligned_cols=245  Identities=7%  Similarity=-0.136  Sum_probs=180.4

Q ss_pred             HHHhCCChhHHHHHHHHhhhhhhhhcCC---CCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc
Q 036356          143 GYAKNGYAEEAVKLFPKWMDYYIGKSEY---RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE  219 (462)
Q Consensus       143 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~  219 (462)
                      .....|++++|++.|+++     .....   +.+..++..+...|...|++++|...|++..+.++              
T Consensus        14 ~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------------   74 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQI-----LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--------------   74 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHH-----HTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--------------
T ss_pred             ccCccchHHHHHHHHHHH-----HhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--------------
Confidence            345678889999999987     33321   12456777888888888888888888877553221              


Q ss_pred             hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCC
Q 036356          220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG  299 (462)
Q Consensus       220 ~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~  299 (462)
                                  .+...+..+..++...|++++|...++.+.+..                 +.+...|..+...|.+.|
T Consensus        75 ------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------------~~~~~~~~~la~~~~~~g  125 (275)
T 1xnf_A           75 ------------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-----------------PTYNYAHLNRGIALYYGG  125 (275)
T ss_dssp             ------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCTHHHHHHHHHHHHTT
T ss_pred             ------------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----------------ccccHHHHHHHHHHHHhc
Confidence                        233456667777888999999999999999864                 246788999999999999


Q ss_pred             ChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC--CCCccchHHHHHHHHhcCChHHHHH
Q 036356          300 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMTVGYGLHGLGEEGWV  377 (462)
Q Consensus       300 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~  377 (462)
                      ++++|...|++.+     .  ..|+.......+..+...|++++|...++...  .|+......++..+...++.++|..
T Consensus       126 ~~~~A~~~~~~a~-----~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  198 (275)
T 1xnf_A          126 RDKLAQDDLLAFY-----Q--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLME  198 (275)
T ss_dssp             CHHHHHHHHHHHH-----H--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHH
T ss_pred             cHHHHHHHHHHHH-----H--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHH
Confidence            9999999999943     2  23554455555556677899999999997665  2333333457777888888999999


Q ss_pred             HHHHHHHCCCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 036356          378 LFHHIRKHGIEPR-----HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKIPMQQWENMLQT  446 (462)
Q Consensus       378 ~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  446 (462)
                      .+.+....  .|+     ...|..+...|.+.|++++|...+++. ...|+.  +.....++...|++++|+..+
T Consensus       199 ~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          199 RLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence            99988763  332     578889999999999999999999998 666643  333455777788888888665

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.37  E-value=4.7e-12  Score=119.61  Aligned_cols=282  Identities=13%  Similarity=0.023  Sum_probs=198.2

Q ss_pred             hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCe----eeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356           85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV----TLRNAMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus        85 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      .+..+...+...|++++|...|+++.+.+.                 .+.    ..|..+...|...|++++|...|++.
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-----------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  112 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-----------------EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD  112 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------------SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-----------------cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            445566778889999999999999998864                 233    46888889999999999999999986


Q ss_pred             hhhhhhhcCC-CCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhc--CCcchH
Q 036356          161 MDYYIGKSEY-RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS--NEENEY  237 (462)
Q Consensus       161 ~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~--~~~~~~  237 (462)
                      ... ....+. .....++..+...|...|++++|...+++..+                      ++.....  ....++
T Consensus       113 l~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------------------~~~~~~~~~~~~~~~  169 (411)
T 4a1s_A          113 LTL-AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT----------------------LARQLGDRLSEGRAL  169 (411)
T ss_dssp             HHH-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HHHHHTCHHHHHHHH
T ss_pred             HHH-HHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------------HHHHhhchHHHHHHH
Confidence            211 011121 22356788888999999999999998886542                      1111100  112345


Q ss_pred             HHHHHhhcCccc-----------------hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC
Q 036356          238 GTALDCSCDLEF-----------------LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY  300 (462)
Q Consensus       238 ~~ll~~~~~~~~-----------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~  300 (462)
                      ..+...+...|+                 +++|...++...+.......           .......+..+...|...|+
T Consensus       170 ~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~  238 (411)
T 4a1s_A          170 YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD-----------RGAQGRACGNLGNTYYLLGD  238 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHcCC
Confidence            666677777888                 88888888776543110000           00124577888889999999


Q ss_pred             hhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-------CccchHHHHHHHHhcCC
Q 036356          301 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-------DVVMRSAMTVGYGLHGL  371 (462)
Q Consensus       301 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-------~~~~~~~li~~~~~~~~  371 (462)
                      +++|...+.+.+...-...........+..+...|...|++++|...|++..+  +       ...++..+...|...|+
T Consensus       239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  318 (411)
T 4a1s_A          239 FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE  318 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence            99999999986542211111111234778888899999999999999987653  1       14567788888999999


Q ss_pred             hHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          372 GEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       372 ~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +++|...+++....    +..+. ..++..+...|...|++++|.+.+++.
T Consensus       319 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  369 (411)
T 4a1s_A          319 FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH  369 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            99999999887763    11111 457788888999999999999988886

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.36  E-value=7.1e-12  Score=118.36  Aligned_cols=274  Identities=12%  Similarity=0.041  Sum_probs=198.2

Q ss_pred             eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC-c----hHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHH
Q 036356          136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-V----IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA  210 (462)
Q Consensus       136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  210 (462)
                      .+..+...+...|++++|+..|++.     ...  .|+ .    .+|..+...|...|++++|...+++..+        
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~a-----l~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------  114 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAA-----IQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT--------  114 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH-----HHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHH-----HHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence            3445667789999999999999997     333  233 2    4788888999999999999998886432        


Q ss_pred             HHHHHHhCchHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHH
Q 036356          211 MIVGYGLHEWSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW  288 (462)
Q Consensus       211 li~~~~~~~~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  288 (462)
                                    +.+....  .....+..+...+...|++++|...++...+.....+.           .......+
T Consensus       115 --------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~  169 (411)
T 4a1s_A          115 --------------LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-----------RLSEGRAL  169 (411)
T ss_dssp             --------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHH
T ss_pred             --------------HHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-----------hHHHHHHH
Confidence                          1111100  12234566777788889999999988887664211000           01234578


Q ss_pred             HHHHHHHHcCCC-----------------hhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhcc
Q 036356          289 NAMISGYAKNGY-----------------AEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDR  350 (462)
Q Consensus       289 ~~li~~~~~~~~-----------------~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~  350 (462)
                      ..+...|...|+                 +++|...+.+.+.-. ...+..+ ...++..+...|...|++++|...+++
T Consensus       170 ~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  248 (411)
T 4a1s_A          170 YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM-RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE  248 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            888889999999                 999999998865421 1222222 345788888999999999999999988


Q ss_pred             CCC-----CC----ccchHHHHHHHHhcCChHHHHHHHHHHHHCC--C--CC-CHhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356          351 TLD-----KD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG--I--EP-RHQHYARVVDLLARAGYSNHAFKFIMN  416 (462)
Q Consensus       351 ~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~  416 (462)
                      ..+     .+    ..++..+...|...|++++|.+.+++..+..  .  .+ ...++..+...|...|++++|.+.+++
T Consensus       249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  328 (411)
T 4a1s_A          249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR  328 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            763     12    2278889999999999999999999887731  1  11 156788899999999999999999998


Q ss_pred             C-CC------CC-CHHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356          417 M-PI------EL-RLSVRRALLSAWKIPMQQWENMLQTIRGI  450 (462)
Q Consensus       417 m-~~------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  450 (462)
                      . .+      .+ ...++..+...|...|+.++|...+.+.+
T Consensus       329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  370 (411)
T 4a1s_A          329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL  370 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            7 11      11 24478889999999999999998887654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.36  E-value=1.1e-11  Score=116.61  Aligned_cols=279  Identities=11%  Similarity=-0.006  Sum_probs=199.9

Q ss_pred             CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC----chHHHHHHHHHHhcCCcccHHHHhhccCCCCcch
Q 036356          132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN----VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM  207 (462)
Q Consensus       132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  207 (462)
                      +....+......+...|++++|...|++.     .... +.+    ..++..+...|...|++++|...+++...     
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~a-----l~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----   75 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAA-----VQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT-----   75 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHH-----HhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----
Confidence            34445666777889999999999999997     3332 112    35778888899999999999998876431     


Q ss_pred             HHHHHHHHHhCchHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCH
Q 036356          208 RSAMIVGYGLHEWSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV  285 (462)
Q Consensus       208 ~~~li~~~~~~~~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  285 (462)
                                       +.+....  .....+..+...+...|++++|...++...+.....+.           .....
T Consensus        76 -----------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~  127 (406)
T 3sf4_A           76 -----------------LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-----------KVGEA  127 (406)
T ss_dssp             -----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------HHHHH
T ss_pred             -----------------HHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-----------ccchH
Confidence                             1111100  11234566677778889999999888887654211000           00114


Q ss_pred             hHHHHHHHHHHcCCC--------------------hhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchH
Q 036356          286 TLWNAMISGYAKNGY--------------------AEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLA  344 (462)
Q Consensus       286 ~~~~~li~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A  344 (462)
                      .++..+...|...|+                    +++|...+.+.+.-. ...+..| ...++..+...|...|++++|
T Consensus       128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A  206 (406)
T 3sf4_A          128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV-TALGDRAAQGRAFGNLGNTHYLLGNFRDA  206 (406)
T ss_dssp             HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred             HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH-HhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence            578888888999999                    999999998865421 2222222 245788888999999999999


Q ss_pred             HHHhccCCC-----CC----ccchHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHH
Q 036356          345 PMFFDRTLD-----KD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHA  410 (462)
Q Consensus       345 ~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A  410 (462)
                      ...+++..+     ++    ..+|..+...|...|++++|...+++..+.    +-.+. ..++..+...|...|++++|
T Consensus       207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  286 (406)
T 3sf4_A          207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA  286 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence            999987762     22    237888999999999999999999988763    11111 56788899999999999999


Q ss_pred             HHHHHhC----CCCCC----HHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356          411 FKFIMNM----PIELR----LSVRRALLSAWKIPMQQWENMLQTIRGI  450 (462)
Q Consensus       411 ~~~~~~m----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~  450 (462)
                      .+.+++.    +..++    ..++..+...|...|++++|...+.+.+
T Consensus       287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999887    11122    5578899999999999999998887654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.35  E-value=1.2e-11  Score=112.95  Aligned_cols=276  Identities=12%  Similarity=0.005  Sum_probs=197.7

Q ss_pred             eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC-----chHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHH
Q 036356          136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-----VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA  210 (462)
Q Consensus       136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  210 (462)
                      .+......+...|++++|...|++.     ...  .|+     ..++..+...|...|++++|...+++....       
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~a-----l~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------   72 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAA-----VQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL-------   72 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH-----HHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHH-----Hhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence            3445566788999999999999997     333  233     357788888999999999999988764321       


Q ss_pred             HHHHHHhCchHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHH
Q 036356          211 MIVGYGLHEWSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW  288 (462)
Q Consensus       211 li~~~~~~~~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  288 (462)
                                     ......  .....+..+...+...|++++|...++...+.....+.           ......++
T Consensus        73 ---------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~  126 (338)
T 3ro2_A           73 ---------------ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-----------KVGEARAL  126 (338)
T ss_dssp             ---------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHH
T ss_pred             ---------------hhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-----------chHHHHHH
Confidence                           010000  11234566677788889999999998887664221000           00114477


Q ss_pred             HHHHHHHHcCCC--------------------hhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHH
Q 036356          289 NAMISGYAKNGY--------------------AEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMF  347 (462)
Q Consensus       289 ~~li~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~  347 (462)
                      ..+...|...|+                    +++|...+.+.+.-. ...+..+ ....+..+...|...|++++|...
T Consensus       127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  205 (338)
T 3ro2_A          127 YNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV-TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA  205 (338)
T ss_dssp             HHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            788888999999                    999999998765421 1222222 245788888999999999999999


Q ss_pred             hccCCC-----CC----ccchHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHHHHH
Q 036356          348 FDRTLD-----KD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHAFKF  413 (462)
Q Consensus       348 ~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~  413 (462)
                      +++..+     ++    ..++..+...+...|++++|.+.+++..+.    +-.+. ..++..+...+...|++++|...
T Consensus       206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  285 (338)
T 3ro2_A          206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY  285 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            987752     12    237788899999999999999999988763    11111 56788899999999999999999


Q ss_pred             HHhC-CC---CC----CHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          414 IMNM-PI---EL----RLSVRRALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       414 ~~~m-~~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      +++. ..   .+    ...++..+...+...|++++|...+.+.+..
T Consensus       286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            9887 11   11    1447888999999999999999888877553

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.34  E-value=9.6e-12  Score=106.38  Aligned_cols=195  Identities=18%  Similarity=0.070  Sum_probs=115.9

Q ss_pred             CCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHH
Q 036356          131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA  210 (462)
Q Consensus       131 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  210 (462)
                      +++...+..+...+.+.|++++|+..|++.     . .--+.+...+..+..++.+.|++++|+..|++..+.++.    
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-----l-~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~----   71 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERA-----L-KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR----   71 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHH-----H-TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-----H-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Confidence            456677788888888888888888888885     2 222345677778888888888888888888876532111    


Q ss_pred             HHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCc-----------cchhhhHHHHHHHHHhCCCcchHHHHHHHHhh
Q 036356          211 MIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDL-----------EFLEQGKIVHGFMIKLGLELESDLLISLTAVC  279 (462)
Q Consensus       211 li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  279 (462)
                                            +...+..+..++.+.           |++++|...++...+..               
T Consensus        72 ----------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------  114 (217)
T 2pl2_A           72 ----------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---------------  114 (217)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred             ----------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---------------
Confidence                                  112233334444444           88888888888887764               


Q ss_pred             cCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-Cc
Q 036356          280 RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DV  356 (462)
Q Consensus       280 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~  356 (462)
                        +.+...|..+-..|...|++++|+..|++.     ....  .+...+..+..+|...|++++|...|++..+  | +.
T Consensus       115 --P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-----l~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  185 (217)
T 2pl2_A          115 --PRYAPLHLQRGLVYALLGERDKAEASLKQA-----LALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL  185 (217)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             --cccHHHHHHHHHHHHHcCChHHHHHHHHHH-----Hhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence              135677777788888888888888888874     3333  4555555555555555555555555554431  2 33


Q ss_pred             cchHHHHHHHHhcCChHHHHHHHHH
Q 036356          357 VMRSAMTVGYGLHGLGEEGWVLFHH  381 (462)
Q Consensus       357 ~~~~~li~~~~~~~~~~~a~~~~~~  381 (462)
                      ..+..+...+...|++++|...+++
T Consensus       186 ~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          186 DLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3444444455555555555544443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.34  E-value=8.8e-11  Score=104.00  Aligned_cols=188  Identities=9%  Similarity=-0.108  Sum_probs=98.8

Q ss_pred             hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhh
Q 036356           85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYY  164 (462)
Q Consensus        85 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  164 (462)
                      .+......+...|++++|...|++..+..+                 .+...+..+...+...|++++|++.|++.    
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a----   63 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-----------------NSPYIYNRRAVCYYELAKYDLAQKDIETY----   63 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-----------------CCSTTHHHHHHHHHHTTCHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----------------CcHHHHHHHHHHHHHHhhHHHHHHHHHHH----
Confidence            344445555666666666666666665543                 33445666666666666666666666664    


Q ss_pred             hhhcCCCCC--chHHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHHHHHHHHHhCc--hHHHHHHHhhhc--C-Cc
Q 036356          165 IGKSEYRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMIVGYGLHE--WSAFGSFDGLLS--N-EE  234 (462)
Q Consensus       165 ~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~--~~a~~~~~~m~~--~-~~  234 (462)
                       ......++  ...|..+...|...|++++|...|++..+   .+...|..+...+...|  ++|...|++...  | +.
T Consensus        64 -~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  142 (272)
T 3u4t_A           64 -FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP  142 (272)
T ss_dssp             -HTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH
T ss_pred             -HhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH
Confidence             22221111  12355566666666666666666655432   23334444444444444  444554444444  2 22


Q ss_pred             chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC---hhHHHHHhhHH
Q 036356          235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY---AEEAVKLFPKW  311 (462)
Q Consensus       235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~  311 (462)
                      ..+..+...+...+++++|...++.+.+...                 .+...+..+...+...|+   .++|...+.+.
T Consensus       143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-----------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  205 (272)
T 3u4t_A          143 KVFYELGQAYYYNKEYVKADSSFVKVLELKP-----------------NIYIGYLWRARANAAQDPDTKQGLAKPYYEKL  205 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----------------TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----------------cchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence            3333333122223377777777777666531                 234555555555655555   55566666554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.34  E-value=2.7e-11  Score=106.24  Aligned_cols=221  Identities=9%  Similarity=-0.004  Sum_probs=171.8

Q ss_pred             hHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhH
Q 036356          175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGK  254 (462)
Q Consensus       175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~  254 (462)
                      ..+..+...+...|++++|...|++..+.+                           .+...+..+..++...|++++|.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~A~   58 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---------------------------KDITYLNNRAAAEYEKGEYETAI   58 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------------------CCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---------------------------ccHHHHHHHHHHHHHcccHHHHH
Confidence            456666677777777777777776543221                           34455667777888889999999


Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHhhcCCCC----HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHH
Q 036356          255 IVHGFMIKLGLELESDLLISLTAVCRYQPN----VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV  330 (462)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  330 (462)
                      ..++...+....              ..++    ...|..+...|.+.|++++|...|.+.+     .  ..|+.     
T Consensus        59 ~~~~~a~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-----~--~~~~~-----  112 (258)
T 3uq3_A           59 STLNDAVEQGRE--------------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-----T--EHRTA-----  112 (258)
T ss_dssp             HHHHHHHHHHHH--------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----H--HCCCH-----
T ss_pred             HHHHHHHHhCcc--------------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-----h--cCchh-----
Confidence            999988775421              0112    5788899999999999999999999953     2  23442     


Q ss_pred             HHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCC
Q 036356          331 LIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGY  406 (462)
Q Consensus       331 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~  406 (462)
                        ..+.+.|++++|...++...+   .+...|..+...+...|++++|...+++..+  ..|+ ...|..+...|...|+
T Consensus       113 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~  188 (258)
T 3uq3_A          113 --DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMS  188 (258)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred             --HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCC
Confidence              346677889999999998764   2456788899999999999999999999998  4454 7889999999999999


Q ss_pred             hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          407 SNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       407 ~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      +++|.+.+++. ...| +...|..+...+...|+.++|...+.+.+..
T Consensus       189 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            99999999998 3334 5778999999999999999999888876544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.34  E-value=4.8e-11  Score=102.20  Aligned_cols=158  Identities=12%  Similarity=0.026  Sum_probs=85.1

Q ss_pred             hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcC-CChhHHHHHhhHHHHH
Q 036356          236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKN-GYAEEAVKLFPKWMDY  314 (462)
Q Consensus       236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~  314 (462)
                      .+..+..++...|++++|...++.+.+..                 +.+...+..+...+... |++++|...+.+.   
T Consensus        44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~---  103 (225)
T 2vq2_A           44 AWLVRAEIYQYLKVNDKAQESFRQALSIK-----------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKA---  103 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhC-----------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHH---
Confidence            34444445555566666666666555543                 13445555555666666 6666666666552   


Q ss_pred             HHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-
Q 036356          315 YIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-  389 (462)
Q Consensus       315 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-  389 (462)
                        ...+..| +...+..+...+...|++++|...|+++.+   .+...+..+...+...|++++|...+++..+  ..| 
T Consensus       104 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~  179 (225)
T 2vq2_A          104 --LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQS--RVEV  179 (225)
T ss_dssp             --HTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCS
T ss_pred             --HcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence              2211222 234555555556666666666666655442   2344555555666666666666666666555  223 


Q ss_pred             -CHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          390 -RHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       390 -~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                       +...+..+...+...|+.++|..+++.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          180 LQADDLLLGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence             3444555555555666666666665555

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.33  E-value=2.7e-11  Score=105.26  Aligned_cols=193  Identities=8%  Similarity=-0.003  Sum_probs=110.3

Q ss_pred             cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356          234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD  313 (462)
Q Consensus       234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  313 (462)
                      ...+..+...+.+.|++++|...++.+.+..                 +.+...+..+...+.+.|++++|...|.+.+ 
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-   84 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-----------------KEDAIPYINFANLLSSVNELERALAFYDKAL-   84 (243)
T ss_dssp             -------------------CCTTHHHHHTTC-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence            3445555666666777777777777666542                 2355666666667777777777777776632 


Q ss_pred             HHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-
Q 036356          314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-  389 (462)
Q Consensus       314 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-  389 (462)
                          ... +.+...+..+...|...|++++|...++++.+   .+...+..+...+...|++++|...++++.+  ..| 
T Consensus        85 ----~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~  157 (243)
T 2q7f_A           85 ----ELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNEN  157 (243)
T ss_dssp             ----HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTT
T ss_pred             ----HcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCc
Confidence                221 22455666666677777777777777766542   3445566666677777777777777777666  334 


Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356          390 RHQHYARVVDLLARAGYSNHAFKFIMNM-PI-ELRLSVRRALLSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       390 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                      +...+..+...+.+.|++++|.+.+++. .. ..+..+|..+...+...|+.++|...+.+.+.
T Consensus       158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence            3556666777777777777777777666 22 23455666777777777777777766665544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.31  E-value=3.1e-10  Score=100.41  Aligned_cols=196  Identities=9%  Similarity=0.023  Sum_probs=129.9

Q ss_pred             chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHH
Q 036356          235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY  314 (462)
Q Consensus       235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  314 (462)
                      ..+..+..++.+.|++++|...++...+.+-.+              ......|..+...+...|++++|...|.+.+. 
T Consensus        38 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~-  102 (272)
T 3u4t_A           38 YIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT--------------KAKSADFEYYGKILMKKGQDSLAIQQYQAAVD-  102 (272)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT--------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch--------------hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh-
Confidence            356666667777788888888887777632110              11233477777778888888888888877432 


Q ss_pred             HHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 036356          315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-  390 (462)
Q Consensus       315 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-  390 (462)
                          .. +.+...+..+...|...|++++|...|++..+  | +...|..+...+...+++++|.+.|++..+  ..|+ 
T Consensus       103 ----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~  175 (272)
T 3u4t_A          103 ----RD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNI  175 (272)
T ss_dssp             ----HS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTC
T ss_pred             ----cC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccc
Confidence                21 12456777777888888888888888887764  2 344555555233445588888888888877  5565 


Q ss_pred             HhHHHHHHHHHHhcCC---hHHHHHHHHhC----CCCCC------HHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          391 HQHYARVVDLLARAGY---SNHAFKFIMNM----PIELR------LSVRRALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       391 ~~~~~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      ...+..+...+...|+   +++|...+++.    .-.|+      ...|..+...|...|++++|+..+.+.+..
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          176 YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL  250 (272)
T ss_dssp             HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            5666677777777777   76777777665    12233      246777778888888888888777766543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.29  E-value=1.7e-10  Score=98.67  Aligned_cols=192  Identities=10%  Similarity=-0.054  Sum_probs=158.4

Q ss_pred             cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356          234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD  313 (462)
Q Consensus       234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  313 (462)
                      ...+..+...+...|++++|...++.+.+..                 +.+...|..+...|...|++++|...+.+.+ 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-   69 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-----------------PKNELAWLVRAEIYQYLKVNDKAQESFRQAL-   69 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-----------------ccchHHHHHHHHHHHHcCChHHHHHHHHHHH-
Confidence            3456777888889999999999999998864                 2467889999999999999999999999853 


Q ss_pred             HHHHhhCCCCchhHHHHHHHHHHhc-CCcchHHHHhccCCC--CC---ccchHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036356          314 YYIGKSEYRNNVIVNTVLIDMYAKC-GSVDLAPMFFDRTLD--KD---VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI  387 (462)
Q Consensus       314 ~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  387 (462)
                          ... +.+..++..+...|... |++++|...++++.+  .+   ...|..+...+...|++++|...++++.+  .
T Consensus        70 ----~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~  142 (225)
T 2vq2_A           70 ----SIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA--A  142 (225)
T ss_dssp             ----HHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred             ----HhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence                222 23577888899999999 999999999998765  22   45678889999999999999999999988  4


Q ss_pred             CCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356          388 EPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIE--LRLSVRRALLSAWKIPMQQWENMLQTIRGI  450 (462)
Q Consensus       388 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  450 (462)
                      .|+ ...+..+...+.+.|++++|.+.+++. ...  .+...+..+...+...|+.+++...+....
T Consensus       143 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          143 QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            565 788999999999999999999999998 323  466678888888888999888876655544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.28  E-value=1.6e-10  Score=107.28  Aligned_cols=245  Identities=11%  Similarity=0.002  Sum_probs=173.4

Q ss_pred             cchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCC-hhHHHHHHHHhh
Q 036356           83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGY-AEEAVKLFPKWM  161 (462)
Q Consensus        83 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~  161 (462)
                      ..+|+.+..++.+.|++++|...+++.++..+                 -+...|+.+..++...|+ +++|+..|++. 
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-----------------~~~~a~~~~g~~l~~~g~d~~eAl~~~~~a-  158 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-----------------ANYTVWHFRRVLLKSLQKDLHEEMNYITAI-  158 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-----------------cCHHHHHHHHHHHHHcccCHHHHHHHHHHH-
Confidence            45688888888889999999999999998865                 567889999999999996 99999999996 


Q ss_pred             hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHH
Q 036356          162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTAL  241 (462)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll  241 (462)
                          ... -+-+...|+.+..++.+.|++++|+..|++....+..                          +...|..+.
T Consensus       159 ----l~l-~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~--------------------------~~~a~~~lg  207 (382)
T 2h6f_A          159 ----IEE-QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK--------------------------NYHAWQHRQ  207 (382)
T ss_dssp             ----HHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--------------------------CHHHHHHHH
T ss_pred             ----HHH-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--------------------------CHHHHHHHH
Confidence                322 2335778888999999999999999999887643332                          233455566


Q ss_pred             HhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc-CCChhHH-----HHHhhHHHHHH
Q 036356          242 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK-NGYAEEA-----VKLFPKWMDYY  315 (462)
Q Consensus       242 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~-~~~~~~a-----~~~~~~~~~~~  315 (462)
                      .++.+.|++++|+..++.+++...                 .+...|+.+..++.+ .|..++|     +..|.+.+.  
T Consensus       208 ~~~~~~g~~~eAl~~~~~al~l~P-----------------~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~--  268 (382)
T 2h6f_A          208 WVIQEFKLWDNELQYVDQLLKEDV-----------------RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--  268 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHcCChHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--
Confidence            666778889999999999988752                 467888888888888 6665777     466666332  


Q ss_pred             HHhhCCCC-chhHHHHHHHHHHhcC--CcchHHHHhccCC-C-CCccchHHHHHHHHhcC---------ChHHHHHHHHH
Q 036356          316 IGKSEYRN-NVIVNTVLIDMYAKCG--SVDLAPMFFDRTL-D-KDVVMRSAMTVGYGLHG---------LGEEGWVLFHH  381 (462)
Q Consensus       316 ~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~-~-~~~~~~~~li~~~~~~~---------~~~~a~~~~~~  381 (462)
                           +.| +...|+.+...+.+.|  +.++|...+.++. . .+...+..+...|.+.|         ..++|.+++++
T Consensus       269 -----l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~  343 (382)
T 2h6f_A          269 -----LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI  343 (382)
T ss_dssp             -----HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             -----HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence                 234 3566777777777766  4666766666552 1 23345556666666653         24677777777


Q ss_pred             H-HHCCCCCC-HhHHHHHHHHHH
Q 036356          382 I-RKHGIEPR-HQHYARVVDLLA  402 (462)
Q Consensus       382 m-~~~g~~p~-~~~~~~li~~~~  402 (462)
                      + .+  +.|. ...|..+...+.
T Consensus       344 l~~~--~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          344 LAKE--KDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             HHHT--TCGGGHHHHHHHHHHHH
T ss_pred             HHHH--hCchhHHHHHHHHHHHH
Confidence            6 55  5565 334444444443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.26  E-value=1.1e-09  Score=97.11  Aligned_cols=223  Identities=10%  Similarity=-0.045  Sum_probs=113.3

Q ss_pred             CchHHHHHHHHHHhcCCcccHHHHhhccCCC-CcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchh
Q 036356          173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLE  251 (462)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~  251 (462)
                      +..++..+...|...|++++|...|++..++ +...+..+...|..                         .....++++
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~-------------------------g~~~~~~~~   59 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQ-------------------------GQGVEKNLK   59 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------TSSSCCCHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc-------------------------CCCcCCCHH
Confidence            4556667777788888888888888766543 23334444444433                         000045555


Q ss_pred             hhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc----CCChhHHHHHhhHHHHHHHHhhCCCCchhH
Q 036356          252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK----NGYAEEAVKLFPKWMDYYIGKSEYRNNVIV  327 (462)
Q Consensus       252 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~  327 (462)
                      +|...|+...+.+                   +...+..+...|..    .+++++|...|++.+     +.+   +...
T Consensus        60 ~A~~~~~~a~~~~-------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-----~~~---~~~a  112 (273)
T 1ouv_A           60 KAASFYAKACDLN-------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-----DLK---YAEG  112 (273)
T ss_dssp             HHHHHHHHHHHTT-------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-----HTT---CHHH
T ss_pred             HHHHHHHHHHHCC-------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-----HcC---CccH
Confidence            5555555554432                   33344444444555    555555555555521     222   3444


Q ss_pred             HHHHHHHHHh----cCCcchHHHHhccCCC-CCccchHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036356          328 NTVLIDMYAK----CGSVDLAPMFFDRTLD-KDVVMRSAMTVGYGL----HGLGEEGWVLFHHIRKHGIEPRHQHYARVV  398 (462)
Q Consensus       328 ~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li  398 (462)
                      +..+...|..    .+++++|...|++..+ .+...+..+...|..    .+++++|.+.|++..+.+   +...+..+.
T Consensus       113 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg  189 (273)
T 1ouv_A          113 CASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAG  189 (273)
T ss_dssp             HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            4445555555    5555555555554432 233344444445544    555555555555555532   234445555


Q ss_pred             HHHHh----cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHc----cCChHHHHHHHHhhhh
Q 036356          399 DLLAR----AGYSNHAFKFIMNM-PIELRLSVRRALLSAWKI----PMQQWENMLQTIRGID  451 (462)
Q Consensus       399 ~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~  451 (462)
                      ..|..    .+++++|.+.+++. ...| ...+..+...|..    .++.++|+..+.+...
T Consensus       190 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~  250 (273)
T 1ouv_A          190 NMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK  250 (273)
T ss_dssp             HHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred             HHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence            55555    55555555555554 2222 4444555555555    5555555555544443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.26  E-value=9.4e-11  Score=101.79  Aligned_cols=94  Identities=10%  Similarity=-0.019  Sum_probs=37.5

Q ss_pred             chHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhh
Q 036356           84 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY  163 (462)
Q Consensus        84 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  163 (462)
                      .+|..+...+...|+++.|...|+++.+...                 .+...+..+...+...|++++|++.|++.   
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~---   83 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-----------------EDAIPYINFANLLSSVNELERALAFYDKA---   83 (243)
T ss_dssp             ------------------CCTTHHHHHTTCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-----------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence            3444445555555555555555555554432                 34444555555555555555555555553   


Q ss_pred             hhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhcc
Q 036356          164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT  200 (462)
Q Consensus       164 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  200 (462)
                        ... .+.+..++..+...|...|++++|...+++.
T Consensus        84 --~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  117 (243)
T 2q7f_A           84 --LEL-DSSAATAYYGAGNVYVVKEMYKEAKDMFEKA  117 (243)
T ss_dssp             --HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --HHc-CCcchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence              111 1223444455555555555555555555443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.25  E-value=4.3e-10  Score=99.75  Aligned_cols=219  Identities=12%  Similarity=-0.047  Sum_probs=164.7

Q ss_pred             CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHh----cCCcccHHHHhhccCCC-Ccc
Q 036356          132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTLDK-DVV  206 (462)
Q Consensus       132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~-~~~  206 (462)
                      -+..++..+...+...|++++|++.|++.     .+   +.+...+..+...|..    .+++++|...|++..+. +..
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a-----~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~   75 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKA-----CD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSN   75 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHH-----HH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHH
Confidence            35677888889999999999999999996     44   3345778889999999    99999999999876533 222


Q ss_pred             hHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcC----ccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCC
Q 036356          207 MRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCD----LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ  282 (462)
Q Consensus       207 ~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  282 (462)
                      .                             +..+...+..    .+++++|...|+...+.+                  
T Consensus        76 a-----------------------------~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------  108 (273)
T 1ouv_A           76 G-----------------------------CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------------------  108 (273)
T ss_dssp             H-----------------------------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------
T ss_pred             H-----------------------------HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------------------
Confidence            2                             3334444444    778888888888877643                  


Q ss_pred             CCHhHHHHHHHHHHc----CCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh----cCCcchHHHHhccCCC-
Q 036356          283 PNVTLWNAMISGYAK----NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTLD-  353 (462)
Q Consensus       283 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-  353 (462)
                       +...+..+...|..    .+++++|...|.+.     .+.+   +...+..+...|..    .+++++|...|++..+ 
T Consensus       109 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a-----~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          109 -YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA-----CDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             -CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH-----HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             -CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH-----HhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence             45667777777777    88888888888874     3333   45566677777777    8888888888887653 


Q ss_pred             CCccchHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHhC
Q 036356          354 KDVVMRSAMTVGYGL----HGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR----AGYSNHAFKFIMNM  417 (462)
Q Consensus       354 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m  417 (462)
                      .+...+..+...|..    .+++++|.+.+++..+.+  | ...+..+...|..    .+++++|.+.+++.
T Consensus       180 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a  248 (273)
T 1ouv_A          180 KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKG  248 (273)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence            355667778888888    889999999999888843  3 6677778888888    88899998888876

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.23  E-value=4.5e-10  Score=104.20  Aligned_cols=243  Identities=9%  Similarity=-0.051  Sum_probs=185.9

Q ss_pred             eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCC-cccHHHHhhccCCCCcchHHHHHH
Q 036356          135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS-VDLAPMFFDRTLDKDVVMRSAMIV  213 (462)
Q Consensus       135 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~li~  213 (462)
                      ..|+.+...+.+.|++++|++.|++.     ... -+-+..+|+.+..++.+.|+ +++|+..|++....+..       
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~a-----l~l-~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-------  164 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDA-----IEL-NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-------  164 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHH-----HHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-------
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHH-----HHh-CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-------
Confidence            45777788888999999999999986     222 23346788888899999996 99999998887643321       


Q ss_pred             HHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHH
Q 036356          214 GYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS  293 (462)
Q Consensus       214 ~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~  293 (462)
                                         +...|..+..++.+.|++++|+..|+.+++..                 +-+...|..+..
T Consensus       165 -------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-----------------P~~~~a~~~lg~  208 (382)
T 2h6f_A          165 -------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-----------------AKNYHAWQHRQW  208 (382)
T ss_dssp             -------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-----------------TTCHHHHHHHHH
T ss_pred             -------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------ccCHHHHHHHHH
Confidence                               23345566666777899999999999999875                 257889999999


Q ss_pred             HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh-cCCcchH-----HHHhccCC--CC-CccchHHHHH
Q 036356          294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK-CGSVDLA-----PMFFDRTL--DK-DVVMRSAMTV  364 (462)
Q Consensus       294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A-----~~~~~~~~--~~-~~~~~~~li~  364 (462)
                      ++.+.|++++|+..|++.+     ... .-+...|+.+..+|.+ .|..++|     ...|++..  .| +...|+.+..
T Consensus       209 ~~~~~g~~~eAl~~~~~al-----~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~  282 (382)
T 2h6f_A          209 VIQEFKLWDNELQYVDQLL-----KED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG  282 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHH-----HHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHH-----HhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            9999999999999999954     322 2257889999999999 6666888     47777665  34 5678888888


Q ss_pred             HHHhcC--ChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcC---------ChHHHHHHHHhC--CCCCCHH-HHHHH
Q 036356          365 GYGLHG--LGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAG---------YSNHAFKFIMNM--PIELRLS-VRRAL  429 (462)
Q Consensus       365 ~~~~~~--~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g---------~~~~A~~~~~~m--~~~p~~~-~~~~l  429 (462)
                      .+...|  ++++|.+.+.++ +  ..|+ ...+..+...|.+.|         .+++|+++++++  .+.|... .|..+
T Consensus       283 ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~  359 (382)
T 2h6f_A          283 ILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYI  359 (382)
T ss_dssp             HHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            999888  689999999988 3  4555 678889999998874         358999999998  6677544 55555


Q ss_pred             HHHHHc
Q 036356          430 LSAWKI  435 (462)
Q Consensus       430 ~~~~~~  435 (462)
                      ...+..
T Consensus       360 ~~~l~~  365 (382)
T 2h6f_A          360 GRSLQS  365 (382)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.23  E-value=3e-10  Score=106.20  Aligned_cols=295  Identities=8%  Similarity=-0.105  Sum_probs=203.6

Q ss_pred             HHhCCChhHHHHHHHHhhhhhhhhcCC--CCCchHHHHHHHHH--HhcCCcccHH-----------HHhhccCCC--Ccc
Q 036356          144 YAKNGYAEEAVKLFPKWMDYYIGKSEY--RNNVIVNTVLIDMY--AKCGSVDLAP-----------MFFDRTLDK--DVV  206 (462)
Q Consensus       144 ~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~~~~li~~~--~~~g~~~~a~-----------~~~~~m~~~--~~~  206 (462)
                      +.+.+++++|..++++...   .-..+  .++...|..++..-  .-.++++.+.           +.++.+...  +..
T Consensus        22 ~i~~~~~~~A~~l~~~i~~---~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~   98 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQ---ELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLT   98 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHH---HHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHH---HHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCch
Confidence            5679999999999999721   11222  23344445444432  2234444444           666665421  111


Q ss_pred             h------HHHHHHHHHhCc--hHHHHHHHhhhc-----CC----cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcch
Q 036356          207 M------RSAMIVGYGLHE--WSAFGSFDGLLS-----NE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES  269 (462)
Q Consensus       207 ~------~~~li~~~~~~~--~~a~~~~~~m~~-----~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  269 (462)
                      .      +......+...|  ++|...|++...     ++    ..++..+..++...|+++.|...+....+.....+.
T Consensus        99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  178 (383)
T 3ulq_A           99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA  178 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence            1      111233455556  999999998877     33    356888889999999999999999998765321000


Q ss_pred             HHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHh
Q 036356          270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFF  348 (462)
Q Consensus       270 ~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~  348 (462)
                      .          ......+++.+...|...|++++|...|.+.+.-. .+.+..+ ...++..+...|...|++++|...|
T Consensus       179 ~----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~  247 (383)
T 3ulq_A          179 Y----------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA-EAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF  247 (383)
T ss_dssp             T----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             c----------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            0          00124578888899999999999999999876521 1222112 2357888999999999999999999


Q ss_pred             ccCCC-----CC----ccchHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC-HhHHHHHHHHHHhcCC---hHHHHH
Q 036356          349 DRTLD-----KD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG---IEPR-HQHYARVVDLLARAGY---SNHAFK  412 (462)
Q Consensus       349 ~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~-~~~~~~li~~~~~~g~---~~~A~~  412 (462)
                      ++..+     .+    ..++..+...|.+.|++++|.+.+++..+..   -.|. ...+..+...+...|+   +++|+.
T Consensus       248 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~  327 (383)
T 3ulq_A          248 KRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFD  327 (383)
T ss_dssp             HHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            87653     22    3457888999999999999999999987641   0122 3346778888888998   999999


Q ss_pred             HHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          413 FIMNMPIELR-LSVRRALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       413 ~~~~m~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      ++++.+..|+ ...+..+...|...|++++|...+.+.+..
T Consensus       328 ~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          328 FLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            9999854443 447778999999999999999888876543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.21  E-value=1.7e-09  Score=103.30  Aligned_cols=310  Identities=8%  Similarity=-0.052  Sum_probs=136.3

Q ss_pred             HHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCCh---hHHHHHHHHhhhhhh
Q 036356           89 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYA---EEAVKLFPKWMDYYI  165 (462)
Q Consensus        89 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~  165 (462)
                      +...+.+.|++++|.++|++..+.|.                 ++  .+..|...|...|+.   ++|++.|++-     
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g~-----------------~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A-----   64 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELGY-----------------SE--AQVGLADIQVGTRDPAQIKQAEATYRAA-----   64 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTC-----------------CT--GGGTCC---------------------------
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCCC-----------------HH--HHHHHHHHHHccCCCCCHHHHHHHHHHH-----
Confidence            44455667788888888888777654                 22  233344444445555   6677776664     


Q ss_pred             hhcCCCCCchHHHHHHHHHHhcC-----CcccHHHHhhccCCC-CcchHHHHHHHHHhCc-----hHHHHHHHhhhc-CC
Q 036356          166 GKSEYRNNVIVNTVLIDMYAKCG-----SVDLAPMFFDRTLDK-DVVMRSAMIVGYGLHE-----WSAFGSFDGLLS-NE  233 (462)
Q Consensus       166 ~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~-----~~a~~~~~~m~~-~~  233 (462)
                      .+.    +...+..|...+...+     ++++|..+|++..++ +...+..+...|...+     .++++.+..... .+
T Consensus        65 ~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~  140 (452)
T 3e4b_A           65 ADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY  140 (452)
T ss_dssp             ----------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC
T ss_pred             HhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC
Confidence            211    3344444555344443     555666666654432 3334555555554443     233333333332 33


Q ss_pred             cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCC---ChhHHHHHhhH
Q 036356          234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG---YAEEAVKLFPK  310 (462)
Q Consensus       234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~  310 (462)
                      ......+...|...+.++.+......+.+.-..                .+...+..+...|.+.|   +.++|++.|.+
T Consensus       141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----------------~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~  204 (452)
T 3e4b_A          141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----------------TTDICYVELATVYQKKQQPEQQAELLKQMEA  204 (452)
T ss_dssp             TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----------------TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence            444444455554444444444332222222111                22224555555555555   55556666555


Q ss_pred             HHHHHHHhhCCCCchhHHHHHHHHHHhc----CCcchHHHHhccCCCCCccchHHHHHH-H--HhcCChHHHHHHHHHHH
Q 036356          311 WMDYYIGKSEYRNNVIVNTVLIDMYAKC----GSVDLAPMFFDRTLDKDVVMRSAMTVG-Y--GLHGLGEEGWVLFHHIR  383 (462)
Q Consensus       311 ~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~  383 (462)
                           ..+.|. ++...+..+...|...    ++.++|..+|++....+...+..|... |  ...+++++|.+.|++..
T Consensus       205 -----aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa  278 (452)
T 3e4b_A          205 -----GVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR  278 (452)
T ss_dssp             -----HHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred             -----HHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence                 222332 2233223344444332    455566666655542233444444444 2  33556666666666655


Q ss_pred             HCCCCCCHhHHHHHHHHHHhcC-----ChHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHhhhhcC
Q 036356          384 KHGIEPRHQHYARVVDLLARAG-----YSNHAFKFIMNMPIELRLSVRRALLSAWKI----PMQQWENMLQTIRGIDEG  453 (462)
Q Consensus       384 ~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~  453 (462)
                      +.|   +...+..|...|. .|     ++++|.+.|++.- .-+...+..|...|..    ..+.++|+..+.+....|
T Consensus       279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence            544   3344444444444 33     5666666666554 3344444444444443    225555555555444433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.21  E-value=1.6e-10  Score=111.15  Aligned_cols=201  Identities=10%  Similarity=-0.004  Sum_probs=169.5

Q ss_pred             hHHHHHHHhhhc---CCcchHHHHHHhhcCccch-hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 036356          220 WSAFGSFDGLLS---NEENEYGTALDCSCDLEFL-EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY  295 (462)
Q Consensus       220 ~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~  295 (462)
                      ++++..+++...   .+...+..+..++...|++ ++|++.|+...+..                 +.+...|..+...|
T Consensus        85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-----------------p~~~~a~~~lg~~~  147 (474)
T 4abn_A           85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-----------------PELVEAWNQLGEVY  147 (474)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-----------------CCCHHHHHHHHHHH
Confidence            556666666555   3567788888899999999 99999999999875                 24688899999999


Q ss_pred             HcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhc---------CCcchHHHHhccCCC---CCccchHHHH
Q 036356          296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC---------GSVDLAPMFFDRTLD---KDVVMRSAMT  363 (462)
Q Consensus       296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~---~~~~~~~~li  363 (462)
                      .+.|++++|.+.|++.+       ...|+...+..+...|...         |++++|...|++..+   .+...|..+.
T Consensus       148 ~~~g~~~~A~~~~~~al-------~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  220 (474)
T 4abn_A          148 WKKGDVTSAHTCFSGAL-------THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILG  220 (474)
T ss_dssp             HHHTCHHHHHHHHHHHH-------TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH-------hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999843       3457778888999999999         999999999998763   4567888999


Q ss_pred             HHHHhc--------CChHHHHHHHHHHHHCCCCC----CHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 036356          364 VGYGLH--------GLGEEGWVLFHHIRKHGIEP----RHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRAL  429 (462)
Q Consensus       364 ~~~~~~--------~~~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l  429 (462)
                      .+|...        |++++|.+.|++..+  +.|    +...|..+..+|...|++++|.+.+++. ...| +...+..+
T Consensus       221 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l  298 (474)
T 4abn_A          221 NAYLSLYFNTGQNPKISQQALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE  298 (474)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999988        999999999999998  567    5889999999999999999999999998 4445 45678889


Q ss_pred             HHHHHccCChHHHHHHH
Q 036356          430 LSAWKIPMQQWENMLQT  446 (462)
Q Consensus       430 ~~~~~~~~~~~~a~~~~  446 (462)
                      ...+...|+.++|+..+
T Consensus       299 ~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          299 QQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999988644

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.19  E-value=4.9e-10  Score=92.83  Aligned_cols=166  Identities=13%  Similarity=0.077  Sum_probs=106.2

Q ss_pred             CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHH
Q 036356          233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM  312 (462)
Q Consensus       233 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  312 (462)
                      +...|..+..++.+.|++++|...|+..++..                 +-+...|..+...|.+.|++++|...+...+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~   66 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-----------------PNNVETLLKLGKTYMDIGLPNDAIESLKKFV   66 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34556667777777777777777777777653                 1356667777777777777777777776632


Q ss_pred             HHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036356          313 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP  389 (462)
Q Consensus       313 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  389 (462)
                           ... ..+...+..+...+...++++.|...+++..+   .+...+..+...|.+.|++++|++.|++..+  +.|
T Consensus        67 -----~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p  138 (184)
T 3vtx_A           67 -----VLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKP  138 (184)
T ss_dssp             -----HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred             -----hcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcc
Confidence                 221 12344555556666667777777776665542   3445566666777777777777777777666  455


Q ss_pred             C-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036356          390 R-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRL  423 (462)
Q Consensus       390 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~  423 (462)
                      + ..+|..+..+|.+.|++++|++.|++. .+.|+.
T Consensus       139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred             hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence            4 556666777777777777777777665 444443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.15  E-value=9.8e-11  Score=105.73  Aligned_cols=186  Identities=13%  Similarity=0.099  Sum_probs=125.9

Q ss_pred             CeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhc--CCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHH
Q 036356          133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS--EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA  210 (462)
Q Consensus       133 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  210 (462)
                      +..++..+...+...|++++|..+|++.........  .......++..+...|...|++++|...+++...        
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------   97 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA--------   97 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence            345688889999999999999999999721100001  2333466788899999999999999998886442        


Q ss_pred             HHHHHHhCchHHHHHHHhhhc----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCC---cchHHHHHHHHhhcCCC
Q 036356          211 MIVGYGLHEWSAFGSFDGLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRYQP  283 (462)
Q Consensus       211 li~~~~~~~~~a~~~~~~m~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~  283 (462)
                                    ++++...    .....+..+...+...|++++|...++...+....   ++            ...
T Consensus        98 --------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~------------~~~  151 (311)
T 3nf1_A           98 --------------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD------------HPD  151 (311)
T ss_dssp             --------------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT------------CHH
T ss_pred             --------------HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC------------ChH
Confidence                          1111110    12345677788888999999999999988765200   00            012


Q ss_pred             CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh-CCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC
Q 036356          284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS-EYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL  352 (462)
Q Consensus       284 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~  352 (462)
                      ....+..+...+...|++++|...|.+.+...-... +..| ...++..+...|...|++++|...|++..
T Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456688888999999999999999998654211111 1122 24566677777777777777777776654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.15  E-value=8.2e-10  Score=103.20  Aligned_cols=223  Identities=11%  Similarity=-0.052  Sum_probs=127.3

Q ss_pred             hccCCChhhHHHHHHhh------cCCCc--chHHHHHHhh--cCccchhhHH-----------HHHHHHHHhcCCcchhH
Q 036356           62 HLWSRTEWSAFGSFDGL------LSNEE--NEYGTALDCS--CDLEFLEQGK-----------IVHGFMIKLGLELESDL  120 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m------~~~~~--~~~~~ll~~~--~~~~~~~~a~-----------~~~~~m~~~g~~~~~~~  120 (462)
                      +.+.+++++|..+++++      ...|.  ..|..++..-  .-.++++.+.           +.++.+.....  ..+.
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~--~~~~   99 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQA--RLTG   99 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTH--HHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCC--Cchh
Confidence            78899999999999998      22333  3334443321  1234455555           77777655422  0000


Q ss_pred             HHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCC-CchHHHHHHHHHHhcCCcccHHHHhhc
Q 036356          121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDR  199 (462)
Q Consensus       121 l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~  199 (462)
                                ......+......+...|++++|+..|++.... ....+-.+ ...+|..+...|...|++++|...+++
T Consensus       100 ----------~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~  168 (383)
T 3ulq_A          100 ----------LLEYYFNFFRGMYELDQREYLSAIKFFKKAESK-LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ  168 (383)
T ss_dssp             ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                      000111223556678899999999999996200 00011112 246788899999999999999998876


Q ss_pred             cCC-----CC-----cchHHHHHHHHHhCc--hHHHHHHHhhhc-----CC----cchHHHHHHhhcCccchhhhHHHHH
Q 036356          200 TLD-----KD-----VVMRSAMIVGYGLHE--WSAFGSFDGLLS-----NE----ENEYGTALDCSCDLEFLEQGKIVHG  258 (462)
Q Consensus       200 m~~-----~~-----~~~~~~li~~~~~~~--~~a~~~~~~m~~-----~~----~~~~~~ll~~~~~~~~~~~a~~~~~  258 (462)
                      ..+     ++     ..+++.+...|...|  ++|...|++...     ++    ..++..+..++...|++++|...++
T Consensus       169 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~  248 (383)
T 3ulq_A          169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK  248 (383)
T ss_dssp             HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            542     11     124455555565555  666666665554     11    1245555666666666666666666


Q ss_pred             HHHHh----CCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHH
Q 036356          259 FMIKL----GLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM  312 (462)
Q Consensus       259 ~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  312 (462)
                      ...+.    +..               +....++..+...|.+.|++++|...+.+.+
T Consensus       249 ~al~~~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  291 (383)
T 3ulq_A          249 RAIAVFEESNIL---------------PSLPQAYFLITQIHYKLGKIDKAHEYHSKGM  291 (383)
T ss_dssp             HHHHHHHHTTCG---------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccc---------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            65542    110               0123445555566666666666666665543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.15  E-value=2.8e-09  Score=96.29  Aligned_cols=206  Identities=8%  Similarity=-0.005  Sum_probs=154.4

Q ss_pred             HHHHHHHhhhc--C-CcchHHHHHHhhc-------Cccch-------hhhHHHHHHHHHh-CCCcchHHHHHHHHhhcCC
Q 036356          221 SAFGSFDGLLS--N-EENEYGTALDCSC-------DLEFL-------EQGKIVHGFMIKL-GLELESDLLISLTAVCRYQ  282 (462)
Q Consensus       221 ~a~~~~~~m~~--~-~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~  282 (462)
                      +|...|++...  | +...|......+.       +.|++       ++|..+|+..++. .                 +
T Consensus        34 ~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-----------------p   96 (308)
T 2ond_A           34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-----------------K   96 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-----------------T
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-----------------c
Confidence            44455555555  3 3344544444443       34665       8999999999873 2                 1


Q ss_pred             CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hh-HHHHHHHHHHhcCCcchHHHHhccCCCCC---cc
Q 036356          283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKD---VV  357 (462)
Q Consensus       283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~  357 (462)
                      .+...|..+...+.+.|++++|..+|++.+     .  ..|+ .. .|..+...+.+.|++++|..+|++..+.+   ..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-----~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  169 (308)
T 2ond_A           97 KNMLLYFAYADYEESRMKYEKVHSIYNRLL-----A--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH  169 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----T--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----h--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH
Confidence            356789999999999999999999999943     2  4554 33 79999999999999999999999887532   22


Q ss_pred             chHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHH
Q 036356          358 MRSAMTVGYG-LHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-P---IEL--RLSVRRAL  429 (462)
Q Consensus       358 ~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~l  429 (462)
                      .|........ ..|++++|..+|++..+  ..|+ ...|..++..+.+.|++++|..+|++. .   +.|  ....|..+
T Consensus       170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~  247 (308)
T 2ond_A          170 VYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF  247 (308)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            3332222222 26999999999999988  4565 788999999999999999999999998 2   355  35689999


Q ss_pred             HHHHHccCChHHHHHHHHhhhhc
Q 036356          430 LSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       430 ~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      +......|+.++|...+.+.++.
T Consensus       248 ~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          248 LAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999777766543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.14  E-value=2.7e-09  Score=99.44  Aligned_cols=305  Identities=6%  Similarity=-0.030  Sum_probs=206.4

Q ss_pred             CCeeeHHHHHHHH--HhCCChhHHHHHHHHhhhhhhhhcCCC--CCchHHHHHHHH--HHhcCCcccHH---------HH
Q 036356          132 PNVTLRNAMISGY--AKNGYAEEAVKLFPKWMDYYIGKSEYR--NNVIVNTVLIDM--YAKCGSVDLAP---------MF  196 (462)
Q Consensus       132 p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~~~~~~li~~--~~~~g~~~~a~---------~~  196 (462)
                      |+..+-+.|-..|  .+.+++++|.+++++...   .-..+.  .+...|..++..  ..-.++++.+.         ..
T Consensus         8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~---~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~   84 (378)
T 3q15_A            8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQ---DIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL   84 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH---HHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence            4555555566666  889999999999998621   112222  334445555543  12224444444         56


Q ss_pred             hhccCCCC-----cch---HHHHHHHHHhCc--hHHHHHHHhhhc-----CC----cchHHHHHHhhcCccchhhhHHHH
Q 036356          197 FDRTLDKD-----VVM---RSAMIVGYGLHE--WSAFGSFDGLLS-----NE----ENEYGTALDCSCDLEFLEQGKIVH  257 (462)
Q Consensus       197 ~~~m~~~~-----~~~---~~~li~~~~~~~--~~a~~~~~~m~~-----~~----~~~~~~ll~~~~~~~~~~~a~~~~  257 (462)
                      ++.+....     ...   +......+...|  ++|+..|++...     ++    ..++..+..++...|+++.|...+
T Consensus        85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~  164 (378)
T 3q15_A           85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI  164 (378)
T ss_dssp             HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            66554211     111   111223344555  999999998876     33    346778888999999999999999


Q ss_pred             HHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHH
Q 036356          258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYA  336 (462)
Q Consensus       258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~  336 (462)
                      ....+.....+..          ......+++.+...|...|++++|.+.|.+.+.-. ...+..+ ...+++.+...|.
T Consensus       165 ~~al~~~~~~~~~----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~  233 (378)
T 3q15_A          165 LQALDIYQNHPLY----------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA-MDIQNDRFIAISLLNIANSYD  233 (378)
T ss_dssp             HHHHHHHHTSTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCc----------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHH
Confidence            9887643210000          00124567888899999999999999999876521 2222222 2457888899999


Q ss_pred             hcCCcchHHHHhccCCC-----C---CccchHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC-HhHHHHHHHHHHhc
Q 036356          337 KCGSVDLAPMFFDRTLD-----K---DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI---EPR-HQHYARVVDLLARA  404 (462)
Q Consensus       337 ~~g~~~~A~~~~~~~~~-----~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~-~~~~~~li~~~~~~  404 (462)
                      ..|++++|...|++..+     .   ...++..+...|.+.|++++|...+++..+..-   .|. ...+..+...+...
T Consensus       234 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~  313 (378)
T 3q15_A          234 RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKET  313 (378)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSS
T ss_pred             HCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence            99999999999987753     2   244677888999999999999999999887521   222 44566666677778


Q ss_pred             CC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356          405 GY---SNHAFKFIMNMPIELR-LSVRRALLSAWKIPMQQWENMLQTIRGI  450 (462)
Q Consensus       405 g~---~~~A~~~~~~m~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~  450 (462)
                      |+   +++|+..+++.+..|+ ...+..+...|...|++++|...+.+.+
T Consensus       314 ~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          314 VDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            88   9999999999754443 3467789999999999999998887664

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.13  E-value=2.1e-09  Score=88.92  Aligned_cols=162  Identities=10%  Similarity=0.050  Sum_probs=137.5

Q ss_pred             CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccch
Q 036356          283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMR  359 (462)
Q Consensus       283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~  359 (462)
                      -+...|..+-..|.+.|++++|+..|++.+.     .. +-+...+..+..+|.+.|++++|...++....   .+...+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   76 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLK-----AD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAY   76 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHH
Confidence            4677899999999999999999999999542     22 22577888999999999999999999998763   355667


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHcc
Q 036356          360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIP  436 (462)
Q Consensus       360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~  436 (462)
                      ..+...+...++++.|...+.+...  ..|+ ...+..+...|.+.|++++|++.+++. ...| +...|..+...|...
T Consensus        77 ~~~~~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~  154 (184)
T 3vtx_A           77 YILGSANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK  154 (184)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence            7788889999999999999999988  5665 778899999999999999999999998 4444 677899999999999


Q ss_pred             CChHHHHHHHHhhhhc
Q 036356          437 MQQWENMLQTIRGIDE  452 (462)
Q Consensus       437 ~~~~~a~~~~~~~~~~  452 (462)
                      |++++|+..+.+.++.
T Consensus       155 g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          155 GLRDEAVKYFKKALEK  170 (184)
T ss_dssp             TCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhC
Confidence            9999999998887653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.12  E-value=1.3e-08  Score=94.52  Aligned_cols=298  Identities=8%  Similarity=0.011  Sum_probs=193.7

Q ss_pred             HHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee----eHHHHHHHHHhCCChhHHHHHHHHhhhh
Q 036356           88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT----LRNAMISGYAKNGYAEEAVKLFPKWMDY  163 (462)
Q Consensus        88 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~  163 (462)
                      .....+...|+++.|...+++......                ..+..    +++.+...+...|++++|.+.+++....
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~~----------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   82 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLALEELP----------------PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM   82 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCC----------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCC----------------CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            334455678999999999999887643                22222    4566777888999999999999886210


Q ss_pred             hhhhcCCC-CCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcC----CcchHH
Q 036356          164 YIGKSEYR-NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN----EENEYG  238 (462)
Q Consensus       164 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~----~~~~~~  238 (462)
                       ....+.. ....++..+...+...|++++|...+++...                      +..+...+    ....+.
T Consensus        83 -~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~----------------------~~~~~~~~~~~~~~~~~~  139 (373)
T 1hz4_A           83 -ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ----------------------LINEQHLEQLPMHEFLVR  139 (373)
T ss_dssp             -HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HHHHTTCTTSTHHHHHHH
T ss_pred             -HHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------------HHHHhccccCcHHHHHHH
Confidence             0111111 1123456677888899999999988876432                      11111001    012344


Q ss_pred             HHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHh
Q 036356          239 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGK  318 (462)
Q Consensus       239 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  318 (462)
                      .+...+...|++++|...++...+.......            ......+..+...+...|++++|...+++.+.. ...
T Consensus       140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~-~~~  206 (373)
T 1hz4_A          140 IRAQLLWAWARLDEAEASARSGIEVLSSYQP------------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENL-LGN  206 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG------------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HTT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHhhccCc------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhc
Confidence            5666777889999999999988876432110            012356777888899999999999999885421 011


Q ss_pred             hCCCCchhHHH----HHHHHHHhcCCcchHHHHhccCCCCCcc-------chHHHHHHHHhcCChHHHHHHHHHHHHC--
Q 036356          319 SEYRNNVIVNT----VLIDMYAKCGSVDLAPMFFDRTLDKDVV-------MRSAMTVGYGLHGLGEEGWVLFHHIRKH--  385 (462)
Q Consensus       319 ~~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~m~~~--  385 (462)
                      .+. + .....    ..+..+...|+.++|...++...+++..       .+..+...+...|++++|...+++....  
T Consensus       207 ~~~-~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  284 (373)
T 1hz4_A          207 GKY-H-SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR  284 (373)
T ss_dssp             SCC-C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCc-c-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            111 1 11111    2334577899999999999988754321       3456778899999999999999887653  


Q ss_pred             --CCCCCH-hHHHHHHHHHHhcCChHHHHHHHHhC-------CCC----CCHHHHHHHHHHHHccCCh
Q 036356          386 --GIEPRH-QHYARVVDLLARAGYSNHAFKFIMNM-------PIE----LRLSVRRALLSAWKIPMQQ  439 (462)
Q Consensus       386 --g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~----p~~~~~~~l~~~~~~~~~~  439 (462)
                        |..++. ..+..+..++...|+.++|...+++.       +..    ..-.....++..+......
T Consensus       285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g~~~~~ll~~~~~~~~~  352 (373)
T 1hz4_A          285 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTL  352 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCS
T ss_pred             hCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHccHHHHHHHHHHHhCCCC
Confidence              322232 36777788899999999999998876       211    1112344566666666664

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.11  E-value=4.3e-10  Score=101.46  Aligned_cols=208  Identities=10%  Similarity=-0.017  Sum_probs=156.5

Q ss_pred             chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHH
Q 036356          235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY  314 (462)
Q Consensus       235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  314 (462)
                      .++..+...+...|++++|..+++.+.+.......         .........+..+...|...|++++|...+.+.+..
T Consensus        28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG---------HDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC---------SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            45667778888899999999999988774100000         000134567888899999999999999999986642


Q ss_pred             HHHhh-C-CCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-------C----CccchHHHHHHHHhcCChHHHHHHHHH
Q 036356          315 YIGKS-E-YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------K----DVVMRSAMTVGYGLHGLGEEGWVLFHH  381 (462)
Q Consensus       315 ~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~  381 (462)
                      .-... + .......+..+...|...|++++|...|++..+       +    ...++..+...|...|++++|.+++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  178 (311)
T 3nf1_A           99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR  178 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            21111 2 222467788899999999999999999987652       1    234677888999999999999999999


Q ss_pred             HHHC------CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-C-----------------------------------
Q 036356          382 IRKH------GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-P-----------------------------------  418 (462)
Q Consensus       382 m~~~------g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~-----------------------------------  418 (462)
                      ..+.      +..|+ ..++..+...|...|++++|.+.++++ .                                   
T Consensus       179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (311)
T 3nf1_A          179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT  258 (311)
T ss_dssp             HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence            8874      22444 567888999999999999999998876 1                                   


Q ss_pred             --------------CCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356          419 --------------IEL-RLSVRRALLSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       419 --------------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                                    ..| +..+|..+...|...|++++|...+.+.++
T Consensus       259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                          123 345788999999999999999988877654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.09  E-value=8.4e-10  Score=106.07  Aligned_cols=203  Identities=9%  Similarity=-0.136  Sum_probs=172.1

Q ss_pred             ChhhHHHHHHhh---cCCCcchHHHHHHhhcCccch-hhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHH
Q 036356           67 TEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFL-EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMIS  142 (462)
Q Consensus        67 ~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~  142 (462)
                      .+++++..++..   .+.+...+..+..++...|++ ++|...|++..+...                 .+...|..+..
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-----------------~~~~a~~~lg~  145 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-----------------ELVEAWNQLGE  145 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-----------------TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-----------------CCHHHHHHHHH
Confidence            356677777766   344677889999999999999 999999999998865                 56789999999


Q ss_pred             HHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhc---------CCcccHHHHhhccC---CCCcchHHH
Q 036356          143 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC---------GSVDLAPMFFDRTL---DKDVVMRSA  210 (462)
Q Consensus       143 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~---~~~~~~~~~  210 (462)
                      .|.+.|++++|.+.|++.     ..  ..|+...+..+...|...         |++++|+..|++..   ..+...|..
T Consensus       146 ~~~~~g~~~~A~~~~~~a-----l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  218 (474)
T 4abn_A          146 VYWKKGDVTSAHTCFSGA-----LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYI  218 (474)
T ss_dssp             HHHHHTCHHHHHHHHHHH-----HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHH-----Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            999999999999999996     33  346778889999999999         99999999999865   345677888


Q ss_pred             HHHHHHhC--------c--hHHHHHHHhhhc--C----CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHH
Q 036356          211 MIVGYGLH--------E--WSAFGSFDGLLS--N----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS  274 (462)
Q Consensus       211 li~~~~~~--------~--~~a~~~~~~m~~--~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  274 (462)
                      +..+|...        +  ++|+..|++..+  |    +...|..+..++...|++++|.+.|+...+..          
T Consensus       219 lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----------  288 (474)
T 4abn_A          219 LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD----------  288 (474)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------
Confidence            88888877        7  999999999888  6    56788889999999999999999999999874          


Q ss_pred             HHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhH
Q 036356          275 LTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK  310 (462)
Q Consensus       275 l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  310 (462)
                             +.+...+..+...+...|++++|.+.+.+
T Consensus       289 -------p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          289 -------PAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             -------TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             -------CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                   24567788888999999999999988765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.09  E-value=3.7e-09  Score=95.51  Aligned_cols=206  Identities=11%  Similarity=0.055  Sum_probs=160.5

Q ss_pred             hhHHHHHHhh---cCCCcchHHHHHHhhc-------Cccch-------hhHHHHHHHHHH-hcCCcchhHHHHHhhhcCC
Q 036356           69 WSAFGSFDGL---LSNEENEYGTALDCSC-------DLEFL-------EQGKIVHGFMIK-LGLELESDLLISLTAVCRY  130 (462)
Q Consensus        69 ~~A~~~~~~m---~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~m~~-~g~~~~~~~l~~~~~~~~~  130 (462)
                      ++|+.+|++.   .+.+...|..+...+.       +.|++       ++|..+|++..+ ..+                
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p----------------   96 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK----------------   96 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT----------------
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc----------------
Confidence            6888899988   5556778888887775       35776       899999999998 343                


Q ss_pred             CCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC-ch-HHHHHHHHHHhcCCcccHHHHhhccCCCCc---
Q 036356          131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKDV---  205 (462)
Q Consensus       131 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---  205 (462)
                       -+...|..++..+.+.|++++|.++|++.     .+  +.|+ .. +|..+...+.+.|++++|..+|++..+.+.   
T Consensus        97 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-----l~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~  168 (308)
T 2ond_A           97 -KNMLLYFAYADYEESRMKYEKVHSIYNRL-----LA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH  168 (308)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT
T ss_pred             -ccHHHHHHHHHHHHhcCCHHHHHHHHHHH-----Hh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH
Confidence             45568999999999999999999999996     33  4554 33 899999999999999999999998765322   


Q ss_pred             chHHHHHHHHH-hCc--hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhC-CCcchHHHHHHHHh
Q 036356          206 VMRSAMIVGYG-LHE--WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLG-LELESDLLISLTAV  278 (462)
Q Consensus       206 ~~~~~li~~~~-~~~--~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~  278 (462)
                      ..|........ ..|  ++|..+|++..+  | +...|..++..+.+.|++++|..+|+...+.. +.|+          
T Consensus       169 ~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~----------  238 (308)
T 2ond_A          169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE----------  238 (308)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG----------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH----------
Confidence            23332222211 235  999999999988  5 46678888888999999999999999999863 3311          


Q ss_pred             hcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHH
Q 036356          279 CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM  312 (462)
Q Consensus       279 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  312 (462)
                          .....|..++..+.+.|+.++|..++.+.+
T Consensus       239 ----~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          239 ----KSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             ----GCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                246788999999999999999999998853

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.01  E-value=8.3e-09  Score=85.00  Aligned_cols=160  Identities=18%  Similarity=0.123  Sum_probs=134.0

Q ss_pred             HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHH
Q 036356          285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSA  361 (462)
Q Consensus       285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~  361 (462)
                      ...|..+...+...|++++|...|.+.+     .. .+.+...+..+...+...|++++|...+++..+   .+...|..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   81 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVY-----DA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV   81 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTC-----CT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHH-----Hh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            4557777888999999999999999843     21 223577888899999999999999999998763   35677888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHccCC
Q 036356          362 MTVGYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM-PI-ELRLSVRRALLSAWKIPMQ  438 (462)
Q Consensus       362 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l~~~~~~~~~  438 (462)
                      +...+...|++++|.+.++++.+.  .| +...+..+...+...|++++|.+.+++. .. ..+...+..+...+...|+
T Consensus        82 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  159 (186)
T 3as5_A           82 LGLTYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR  159 (186)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC
Confidence            999999999999999999999883  44 4778889999999999999999999998 22 3467889999999999999


Q ss_pred             hHHHHHHHHhhhhc
Q 036356          439 QWENMLQTIRGIDE  452 (462)
Q Consensus       439 ~~~a~~~~~~~~~~  452 (462)
                      +++|...+.+.+..
T Consensus       160 ~~~A~~~~~~~~~~  173 (186)
T 3as5_A          160 HEEALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999888877554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.99  E-value=4.6e-08  Score=90.81  Aligned_cols=271  Identities=11%  Similarity=-0.001  Sum_probs=180.8

Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCc----hHHHHHHHHHHhcCCcccHHHHhhccCCC---CcchHHHH
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV----IVNTVLIDMYAKCGSVDLAPMFFDRTLDK---DVVMRSAM  211 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~l  211 (462)
                      .....+...|++++|...+++.     .......+.    .+++.+...+...|++++|...+++....   ....+.  
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~a-----l~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--   91 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLA-----LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY--   91 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH-----HHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH-----HHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH--
Confidence            3444567789999999999885     232211222    24566777788889999998888765421   000000  


Q ss_pred             HHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCC--C-CHhHH
Q 036356          212 IVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ--P-NVTLW  288 (462)
Q Consensus       212 i~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~~  288 (462)
                                           ...++..+...+...|++++|...++...+......            ..  | ....+
T Consensus        92 ---------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~~~  138 (373)
T 1hz4_A           92 ---------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH------------LEQLPMHEFLV  138 (373)
T ss_dssp             ---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------CTTSTHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc------------cccCcHHHHHH
Confidence                                 012244566677788999999999988776421100            00  2 23456


Q ss_pred             HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC----CCCc-cchHH--
Q 036356          289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL----DKDV-VMRSA--  361 (462)
Q Consensus       289 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~--  361 (462)
                      ..+...+...|++++|...+.+.+.. ....+.......+..+...+...|++++|...+++..    .++. ..+..  
T Consensus       139 ~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~  217 (373)
T 1hz4_A          139 RIRAQLLWAWARLDEAEASARSGIEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA  217 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHH-hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence            67778899999999999999986431 1111211134567788889999999999999998764    2222 12222  


Q ss_pred             ---HHHHHHhcCChHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCH-HHHH
Q 036356          362 ---MTVGYGLHGLGEEGWVLFHHIRKHGIEPR---HQHYARVVDLLARAGYSNHAFKFIMNM-------PIELRL-SVRR  427 (462)
Q Consensus       362 ---li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~  427 (462)
                         .+..+...|++++|...+++.......++   ...+..+...+...|++++|...+++.       +..++. ..+.
T Consensus       218 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~  297 (373)
T 1hz4_A          218 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL  297 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence               23447789999999999998876432111   235677888999999999999999876       212223 2667


Q ss_pred             HHHHHHHccCChHHHHHHHHhhh
Q 036356          428 ALLSAWKIPMQQWENMLQTIRGI  450 (462)
Q Consensus       428 ~l~~~~~~~~~~~~a~~~~~~~~  450 (462)
                      .+..++...|+.++|...+.+.+
T Consensus       298 ~la~~~~~~g~~~~A~~~l~~al  320 (373)
T 1hz4_A          298 LLNQLYWQAGRKSDAQRVLLDAL  320 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHH
Confidence            78888999999999998777654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.96  E-value=8e-09  Score=85.10  Aligned_cols=157  Identities=16%  Similarity=0.110  Sum_probs=132.0

Q ss_pred             hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHH
Q 036356          236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY  315 (462)
Q Consensus       236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  315 (462)
                      .+..+...+...|++++|...++.+.+..                 +.+...+..+...+...|++++|...+.+.+   
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---   69 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-----------------AFDVDVALHLGIAYVKTGAVDRGTELLERSL---   69 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHH---
Confidence            45566777888999999999998877643                 2467888899999999999999999999853   


Q ss_pred             HHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H
Q 036356          316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-H  391 (462)
Q Consensus       316 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~  391 (462)
                        .. .+.+...+..+...|...|++++|...+++..+   .+...+..+...+...|++++|.+.+++..+.  .|+ .
T Consensus        70 --~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~  144 (186)
T 3as5_A           70 --AD-APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEG  144 (186)
T ss_dssp             --HH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             --hc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--Cccch
Confidence              22 233577888899999999999999999998763   45677888899999999999999999999884  454 7


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          392 QHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       392 ~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      ..+..+...+...|++++|.+.+++.
T Consensus       145 ~~~~~la~~~~~~~~~~~A~~~~~~~  170 (186)
T 3as5_A          145 KVHRAIAFSYEQMGRHEEALPHFKKA  170 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88999999999999999999999886

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.95  E-value=4.6e-09  Score=105.31  Aligned_cols=158  Identities=13%  Similarity=0.066  Sum_probs=138.6

Q ss_pred             CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--C-Cccch
Q 036356          284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMR  359 (462)
Q Consensus       284 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~  359 (462)
                      +...|+.+-..|.+.|++++|++.|++.+.       +.| +...|+.+..+|.+.|++++|...|++..+  | +...|
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~-------l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~   80 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALE-------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY   80 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            467899999999999999999999999542       234 477899999999999999999999998763  4 56789


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHcc
Q 036356          360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIP  436 (462)
Q Consensus       360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~  436 (462)
                      ..+..+|...|++++|++.|++..+  +.|+ ...|..+..+|.+.|++++|++.+++. .+.| +...|..+...+...
T Consensus        81 ~nLg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~  158 (723)
T 4gyw_A           81 SNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV  158 (723)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence            9999999999999999999999998  7787 789999999999999999999999998 5556 467899999999999


Q ss_pred             CChHHHHHHHHhhh
Q 036356          437 MQQWENMLQTIRGI  450 (462)
Q Consensus       437 ~~~~~a~~~~~~~~  450 (462)
                      |++++|...+.+.+
T Consensus       159 g~~~~A~~~~~kal  172 (723)
T 4gyw_A          159 CDWTDYDERMKKLV  172 (723)
T ss_dssp             TCCTTHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH
Confidence            99999987776653

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.95  E-value=3.2e-07  Score=90.96  Aligned_cols=391  Identities=10%  Similarity=-0.051  Sum_probs=232.7

Q ss_pred             CccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccc-
Q 036356           26 LLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEF-   98 (462)
Q Consensus        26 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~-   98 (462)
                      ..+....++.-++...           .|...|..+   +.+.+.++.+..+|+.+   .+.....|...+..-.+.++ 
T Consensus        48 ~~d~i~~lE~~l~~np-----------~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~  116 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQP-----------TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEE  116 (679)
T ss_dssp             CSCHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--C
T ss_pred             CHHHHHHHHHHHHHCc-----------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCc
Confidence            3344445555555542           377788877   66678999999999999   66667788888988888888 


Q ss_pred             --hhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCCh----hH----HHHHHHHhhhhhhhhc
Q 036356           99 --LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYA----EE----AVKLFPKWMDYYIGKS  168 (462)
Q Consensus        99 --~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~----~~----a~~~~~~m~~~~~~~~  168 (462)
                        ++.+..+|++.+...+               ..|++..|..-+.-..+.++.    ++    ..++|+.-    +...
T Consensus       117 ~~~~~v~~lfeRal~~~~---------------~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErA----l~~v  177 (679)
T 4e6h_A          117 LDAAVIEPVLARCLSKEL---------------GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVV----VDKC  177 (679)
T ss_dssp             CCHHHHHHHHHHHTCSSS---------------CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHH----HHHT
T ss_pred             chHHHHHHHHHHHHHhcC---------------CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH----HHHh
Confidence              9999999999987652               026777787777665554443    23    34666664    2444


Q ss_pred             CC-CCC-chHHHHHHHHHHh---------cCCcccHHHHhhccCC-CCc---chH---HHHHHHHHhC-----------c
Q 036356          169 EY-RNN-VIVNTVLIDMYAK---------CGSVDLAPMFFDRTLD-KDV---VMR---SAMIVGYGLH-----------E  219 (462)
Q Consensus       169 ~~-~~~-~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~-~~~---~~~---~~li~~~~~~-----------~  219 (462)
                      |. .++ ...|...+.....         .++++.+.++|++... |..   .+|   ..+...+...           .
T Consensus       178 G~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~  257 (679)
T 4e6h_A          178 AIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQ  257 (679)
T ss_dssp             TTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHH
T ss_pred             CcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHH
Confidence            65 554 4577777765432         3446677788877663 211   112   1111111000           0


Q ss_pred             -hHHHHHHHhhhc---------CCc--------------------chHHHHHHhhcCcc-------chhhhHHHHHHHHH
Q 036356          220 -WSAFGSFDGLLS---------NEE--------------------NEYGTALDCSCDLE-------FLEQGKIVHGFMIK  262 (462)
Q Consensus       220 -~~a~~~~~~m~~---------~~~--------------------~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~  262 (462)
                       ..|...+.++..         |..                    ..|...+.---..+       ..+.+..+|++.+.
T Consensus       258 y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~  337 (679)
T 4e6h_A          258 YMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ  337 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH
Confidence             112222222111         000                    01111111100000       00111222222222


Q ss_pred             ------------------hCCCcch--HHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHH-----
Q 036356          263 ------------------LGLELES--DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG-----  317 (462)
Q Consensus       263 ------------------~~~~~~~--~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----  317 (462)
                                        .|-....  .+|..-+..|  +.+...|...+...-+.|++++|.++|++.+.....     
T Consensus       338 ~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~  415 (679)
T 4e6h_A          338 HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAAL  415 (679)
T ss_dssp             HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhh
Confidence                              1111111  2222222222  346667888888899999999999999997653210     


Q ss_pred             hhCCCC------------chhHHHHHHHHHHhcCCcchHHHHhccCCCC-CccchHHHH---HHHHhc-CChHHHHHHHH
Q 036356          318 KSEYRN------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMT---VGYGLH-GLGEEGWVLFH  380 (462)
Q Consensus       318 ~~~~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li---~~~~~~-~~~~~a~~~~~  380 (462)
                      ..+. |            ...+|...++...+.|+.+.|..+|....+. +..++...+   ..-.+. ++.+.|..+|+
T Consensus       416 ~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife  494 (679)
T 4e6h_A          416 MEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLE  494 (679)
T ss_dssp             HHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred             hhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            0111 3            2346888888888899999999999987643 333333322   222333 45899999999


Q ss_pred             HHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356          381 HIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL----RLSVRRALLSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       381 ~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                      ...+.  .|+ ...|...++.....|+.+.|..+|+.. ...|    ....|...+.-=...|+.+.+.....++.+
T Consensus       495 ~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~  569 (679)
T 4e6h_A          495 LGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE  569 (679)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred             HHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99984  454 566778888888999999999999997 3334    346889999988899998887755555544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.94  E-value=6.5e-09  Score=104.23  Aligned_cols=158  Identities=9%  Similarity=0.021  Sum_probs=138.6

Q ss_pred             cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356          234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD  313 (462)
Q Consensus       234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  313 (462)
                      ...++.+..++.+.|++++|++.|++.++..                 +-+...|+.+..+|.+.|++++|+..|++.+.
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-----------------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~   71 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-----------------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR   71 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4568888999999999999999999999874                 23678899999999999999999999999542


Q ss_pred             HHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036356          314 YYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP  389 (462)
Q Consensus       314 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  389 (462)
                             +.| +...|..+..+|.+.|++++|.+.|++..+  | +...|+.+...|...|++++|++.|++..+  +.|
T Consensus        72 -------l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P  142 (723)
T 4gyw_A           72 -------ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKP  142 (723)
T ss_dssp             -------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCS
T ss_pred             -------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence                   234 477899999999999999999999998763  3 567899999999999999999999999998  788


Q ss_pred             C-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          390 R-HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       390 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      + ...|..+...|...|++++|.+.+++.
T Consensus       143 ~~~~a~~~L~~~l~~~g~~~~A~~~~~ka  171 (723)
T 4gyw_A          143 DFPDAYCNLAHCLQIVCDWTDYDERMKKL  171 (723)
T ss_dssp             CCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred             CChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence            7 788999999999999999999988775

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.93  E-value=2.6e-08  Score=85.52  Aligned_cols=150  Identities=9%  Similarity=-0.050  Sum_probs=125.7

Q ss_pred             CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-Cccch
Q 036356          283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMR  359 (462)
Q Consensus       283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~  359 (462)
                      .|...|......+.+.|++++|...|.+.     ......++...+..+..++...|++++|...|++..+  | +...|
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-----l~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   79 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEY-----LKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAY   79 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHH-----HhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHH
Confidence            46678888888999999999999999994     3444336667777789999999999999999998763  3 45678


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H-------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHH
Q 036356          360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-H-------QHYARVVDLLARAGYSNHAFKFIMNM-PIELR---LSVRR  427 (462)
Q Consensus       360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~  427 (462)
                      ..+...|...|++++|...+++..+  ..|+ .       ..|..+...+...|++++|++.+++. ...|+   ...|.
T Consensus        80 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  157 (228)
T 4i17_A           80 IGKSAAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALY  157 (228)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHH
Confidence            8899999999999999999999998  5666 3       45788888899999999999999998 66776   56788


Q ss_pred             HHHHHHHccCCh
Q 036356          428 ALLSAWKIPMQQ  439 (462)
Q Consensus       428 ~l~~~~~~~~~~  439 (462)
                      .+...|...|+.
T Consensus       158 ~l~~~~~~~~~~  169 (228)
T 4i17_A          158 SLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888888887

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.92  E-value=7e-08  Score=86.34  Aligned_cols=217  Identities=11%  Similarity=-0.030  Sum_probs=146.6

Q ss_pred             ChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHh
Q 036356          149 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDG  228 (462)
Q Consensus       149 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~  228 (462)
                      ++++|...|++.                    ...|...|++++|...|++..                      .++.+
T Consensus        32 ~~~~A~~~~~~a--------------------~~~~~~~g~~~~A~~~~~~al----------------------~~~~~   69 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------------ATIYRLRKELNLAGDSFLKAA----------------------DYQKK   69 (292)
T ss_dssp             HHHHHHHHHHHH--------------------HHHHHHTTCTHHHHHHHHHHH----------------------HHHHH
T ss_pred             cHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHH----------------------HHHHH
Confidence            488888888773                    345677888888888877533                      11111


Q ss_pred             hhcC--CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCC--CHhHHHHHHHHHHcC-CChhH
Q 036356          229 LLSN--EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP--NVTLWNAMISGYAKN-GYAEE  303 (462)
Q Consensus       229 m~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~li~~~~~~-~~~~~  303 (462)
                      ...+  ...+|+.+..+|.+.|++++|...++...+......             .+  -..+++.+...|... |++++
T Consensus        70 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-------------~~~~~a~~~~~lg~~~~~~lg~~~~  136 (292)
T 1qqe_A           70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG-------------QFRRGANFKFELGEILENDLHDYAK  136 (292)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHHHHHhhcCHHH
Confidence            1110  134567777888888999999988888776421100             01  145788888899996 99999


Q ss_pred             HHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--CCcc--------chHHHHHHHHhcCCh
Q 036356          304 AVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVV--------MRSAMTVGYGLHGLG  372 (462)
Q Consensus       304 a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~--------~~~~li~~~~~~~~~  372 (462)
                      |+..|++.+.-. ...+..+. ..+++.+...|.+.|++++|...|++..+  |+..        .|..+..++...|++
T Consensus       137 A~~~~~~Al~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  215 (292)
T 1qqe_A          137 AIDCYELAGEWY-AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA  215 (292)
T ss_dssp             HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence            999999976421 11111111 45688889999999999999999998753  2211        356677888999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHh------HHHHHHHHHH--hcCChHHHHHHHHhC-CCCCCH
Q 036356          373 EEGWVLFHHIRKHGIEPRHQ------HYARVVDLLA--RAGYSNHAFKFIMNM-PIELRL  423 (462)
Q Consensus       373 ~~a~~~~~~m~~~g~~p~~~------~~~~li~~~~--~~g~~~~A~~~~~~m-~~~p~~  423 (462)
                      ++|...|++..+  +.|+..      .+..++.++.  ..+++++|++.++.+ .+.|+.
T Consensus       216 ~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~  273 (292)
T 1qqe_A          216 VAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK  273 (292)
T ss_dssp             HHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred             HHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence            999999999887  556522      3444566664  457799999999887 555544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.91  E-value=5.6e-09  Score=92.54  Aligned_cols=195  Identities=12%  Similarity=-0.005  Sum_probs=146.8

Q ss_pred             cCccchhhhHHHHHHHHHhCC---CcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh-C
Q 036356          245 CDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS-E  320 (462)
Q Consensus       245 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~  320 (462)
                      ...|++++|...+++..+.-.   .++            .+....++..+...|...|++++|...+.+.+...-... +
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   79 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHD------------HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK   79 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSS------------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCC
Confidence            457888888888887766310   000            012466788899999999999999999998664322111 2


Q ss_pred             C-CCchhHHHHHHHHHHhcCCcchHHHHhccCCC-------C----CccchHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 036356          321 Y-RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------K----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH---  385 (462)
Q Consensus       321 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---  385 (462)
                      . .....++..+...|...|++++|...|++..+       +    ...+|..+...|...|++++|.+.+++..+.   
T Consensus        80 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  159 (283)
T 3edt_B           80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT  159 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            2 22467888899999999999999999987652       2    2456788899999999999999999998874   


Q ss_pred             ---CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-C------------------------------------------
Q 036356          386 ---GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-P------------------------------------------  418 (462)
Q Consensus       386 ---g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~------------------------------------------  418 (462)
                         +-.|+ ..++..+...|...|++++|.+.+++. .                                          
T Consensus       160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (283)
T 3edt_B          160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS  239 (283)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence               22444 568889999999999999999998776 1                                          


Q ss_pred             -------CCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356          419 -------IEL-RLSVRRALLSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       419 -------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                             ..| ...++..+...|...|++++|...+.+.++
T Consensus       240 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          240 WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             ---CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                   112 234778899999999999999988877654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.90  E-value=6.9e-09  Score=96.71  Aligned_cols=302  Identities=11%  Similarity=-0.021  Sum_probs=164.6

Q ss_pred             hccCCChhhHHHHHHhh------cCCC--cchHHHHHHhh--cCccchhhHH---------HHHHHHHHhcCCcchhHHH
Q 036356           62 HLWSRTEWSAFGSFDGL------LSNE--ENEYGTALDCS--CDLEFLEQGK---------IVHGFMIKLGLELESDLLI  122 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m------~~~~--~~~~~~ll~~~--~~~~~~~~a~---------~~~~~m~~~g~~~~~~~l~  122 (462)
                      +...+++++|..+++++      ...|  ...|-.++..-  .-.+.++.+.         ..++.+.....  ..+.  
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~--~~~~--   97 (378)
T 3q15_A           22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQK--KLTG--   97 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGH--HHHH--
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCC--CCcc--
Confidence            57889999999999987      2223  22333333321  1112222233         66666543221  0000  


Q ss_pred             HHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCC----CchHHHHHHHHHHhcCCcccHHHHhh
Q 036356          123 SLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN----NVIVNTVLIDMYAKCGSVDLAPMFFD  198 (462)
Q Consensus       123 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~  198 (462)
                              ......|......+...|++++|+..|++..    ....-.+    ...++..+...|...|+++.|...++
T Consensus        98 --------~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al----~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~  165 (378)
T 3q15_A           98 --------LLKYYSLFFRGMYEFDQKEYVEAIGYYREAE----KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL  165 (378)
T ss_dssp             --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH----HHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence                    0001123334455778999999999999862    1111112    24577888899999999999988887


Q ss_pred             ccCCCCcchHHHHHHHHHhCchHHHHHHHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCC-cchHHHHH
Q 036356          199 RTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE-LESDLLIS  274 (462)
Q Consensus       199 ~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~  274 (462)
                      +..+                      ++.....   ....+++.+..++...|++++|...++...+..-. ++.     
T Consensus       166 ~al~----------------------~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-----  218 (378)
T 3q15_A          166 QALD----------------------IYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND-----  218 (378)
T ss_dssp             HHHH----------------------HHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred             HHHH----------------------HHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH-----
Confidence            6431                      1111000   00123445555556666666666666655542110 000     


Q ss_pred             HHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-
Q 036356          275 LTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-  353 (462)
Q Consensus       275 l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-  353 (462)
                             .....++..+...|...|++++|...|.+.+.- ....+.+....++..+...|.+.|++++|...+++..+ 
T Consensus       219 -------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  290 (378)
T 3q15_A          219 -------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV-SREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH  290 (378)
T ss_dssp             -------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                   022345566666667777777777777666552 22223333356666677777777777777766665431 


Q ss_pred             ----CCc---cchHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          354 ----KDV---VMRSAMTVGYGLHGL---GEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       354 ----~~~---~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                          .+.   ..+..+...|...++   +++|...+++   .+..|+ ...+..+...|...|++++|.+.+++.
T Consensus       291 ~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a  362 (378)
T 3q15_A          291 ITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV  362 (378)
T ss_dssp             CCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                111   123444445555566   5555555554   233333 345666777777788888887777664

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.86  E-value=4.3e-08  Score=87.71  Aligned_cols=194  Identities=8%  Similarity=-0.089  Sum_probs=138.7

Q ss_pred             HHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCC-CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh
Q 036356          241 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS  319 (462)
Q Consensus       241 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  319 (462)
                      ...+...|++++|...|....+.....+            ..+ ...+|+.+...|.+.|++++|+..|.+.+.-. ...
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-~~~  110 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAG------------NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF-THR  110 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHc
Confidence            4456677889999988887766421100            001 25678899999999999999999999876522 122


Q ss_pred             CCCC-chhHHHHHHHHHHhc-CCcchHHHHhccCCC--C---C----ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036356          320 EYRN-NVIVNTVLIDMYAKC-GSVDLAPMFFDRTLD--K---D----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE  388 (462)
Q Consensus       320 ~~~p-~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  388 (462)
                      |-.. -..+++.+..+|... |++++|...|++..+  |   +    ..+|..+...|...|++++|...|++..+.  .
T Consensus       111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~  188 (292)
T 1qqe_A          111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS--S  188 (292)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T
T ss_pred             CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--H
Confidence            2211 245788899999996 999999999998763  2   1    346888899999999999999999999984  3


Q ss_pred             CCH--------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--ccCChHHHHHHHHhh
Q 036356          389 PRH--------QHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS------VRRALLSAWK--IPMQQWENMLQTIRG  449 (462)
Q Consensus       389 p~~--------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~  449 (462)
                      |+.        ..|..+..++...|++++|...+++. .+.|+..      .+..+..++.  ..+++++|+..+.+.
T Consensus       189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~  266 (292)
T 1qqe_A          189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (292)
T ss_dssp             SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence            431        15777888899999999999999998 5556533      3445666664  456788888666443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.85  E-value=5e-08  Score=83.68  Aligned_cols=149  Identities=9%  Similarity=-0.067  Sum_probs=102.8

Q ss_pred             cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356          234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD  313 (462)
Q Consensus       234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  313 (462)
                      ...+......+.+.|++++|...|+...+....                ++...+..+..++.+.|++++|+..|.+.+ 
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-   69 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN----------------QDSVTAYNCGVCADNIKKYKEAADYFDIAI-   69 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC----------------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHH-
Confidence            345566666777778888888888887776421                456666667777888888888888887742 


Q ss_pred             HHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--CC-c-------cchHHHHHHHHhcCChHHHHHHHHHH
Q 036356          314 YYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD-V-------VMRSAMTVGYGLHGLGEEGWVLFHHI  382 (462)
Q Consensus       314 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~-------~~~~~li~~~~~~~~~~~a~~~~~~m  382 (462)
                          .  ..| +...|..+...|...|++++|...|++..+  |+ .       ..|..+...+...|++++|.+.|++.
T Consensus        70 ----~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a  143 (228)
T 4i17_A           70 ----K--KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA  143 (228)
T ss_dssp             ----H--TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----H--hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence                2  233 456677777788888888888888877652  32 3       34666777777888888888888888


Q ss_pred             HHCCCCCC---HhHHHHHHHHHHhcCCh
Q 036356          383 RKHGIEPR---HQHYARVVDLLARAGYS  407 (462)
Q Consensus       383 ~~~g~~p~---~~~~~~li~~~~~~g~~  407 (462)
                      .+  ..|+   ...|..+...|...|+.
T Consensus       144 l~--~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          144 TD--VTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             TT--SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hh--cCCCcccHHHHHHHHHHHHHHHHH
Confidence            77  5665   45666666677666554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.83  E-value=1.5e-08  Score=89.74  Aligned_cols=172  Identities=12%  Similarity=0.074  Sum_probs=131.7

Q ss_pred             cchHHHHHHhhcCccchhhhHHHHHHHHHhCCC---cchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhH
Q 036356          234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK  310 (462)
Q Consensus       234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  310 (462)
                      ..++..+...+...|++++|...++...+..-.   ++            ......++..+...|...|++++|...|.+
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  110 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD------------HPAVAATLNNLAVLYGKRGKYKEAEPLCKR  110 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT------------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc------------chHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            446777888888999999999999988765200   00            012456788899999999999999999999


Q ss_pred             HHHHHHHhhCC--CCchhHHHHHHHHHHhcCCcchHHHHhccCCC-------C----CccchHHHHHHHHhcCChHHHHH
Q 036356          311 WMDYYIGKSEY--RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------K----DVVMRSAMTVGYGLHGLGEEGWV  377 (462)
Q Consensus       311 ~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~  377 (462)
                      .+...-...+.  ......+..+...|...|++++|...|++..+       +    ...++..+...|...|++++|..
T Consensus       111 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  190 (283)
T 3edt_B          111 ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET  190 (283)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            76532222222  22467788899999999999999999987652       1    23467888999999999999999


Q ss_pred             HHHHHHHCC-----------------------------------------------CCCC-HhHHHHHHHHHHhcCChHH
Q 036356          378 LFHHIRKHG-----------------------------------------------IEPR-HQHYARVVDLLARAGYSNH  409 (462)
Q Consensus       378 ~~~~m~~~g-----------------------------------------------~~p~-~~~~~~li~~~~~~g~~~~  409 (462)
                      .+++..+..                                               ..|+ ..++..+...|...|++++
T Consensus       191 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  270 (283)
T 3edt_B          191 LYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEA  270 (283)
T ss_dssp             HHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence            999887630                                               1233 5578889999999999999


Q ss_pred             HHHHHHhC
Q 036356          410 AFKFIMNM  417 (462)
Q Consensus       410 A~~~~~~m  417 (462)
                      |.+++++.
T Consensus       271 A~~~~~~a  278 (283)
T 3edt_B          271 AHTLEDCA  278 (283)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999874

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.81  E-value=3.3e-06  Score=83.77  Aligned_cols=357  Identities=9%  Similarity=-0.032  Sum_probs=232.0

Q ss_pred             ChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHH
Q 036356           67 TEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISG  143 (462)
Q Consensus        67 ~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~  143 (462)
                      ...+.+..|+..   .+.|..+|..++..+.+.++++.+..+|+.+...-+                 .+...|..-+..
T Consensus        47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-----------------~~~~lW~~Yi~~  109 (679)
T 4e6h_A           47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-----------------LMANIWCMRLSL  109 (679)
T ss_dssp             CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-----------------CCHHHHHHHHHH
Confidence            344555556655   666888999999999999999999999999998854                 566788888888


Q ss_pred             HHhCCC---hhHHHHHHHHhhhhhhhhcC-CCCCchHHHHHHHHHHhcCCc--------ccHHHHhhccC------CC-C
Q 036356          144 YAKNGY---AEEAVKLFPKWMDYYIGKSE-YRNNVIVNTVLIDMYAKCGSV--------DLAPMFFDRTL------DK-D  204 (462)
Q Consensus       144 ~~~~g~---~~~a~~~~~~m~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~------~~-~  204 (462)
                      -.+.|+   ++.+.++|+.-     .... ..|++..|..-+....+.++.        +.+.++|+...      ++ .
T Consensus       110 E~~~~~~~~~~~v~~lfeRa-----l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s  184 (679)
T 4e6h_A          110 EFDKMEELDAAVIEPVLARC-----LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKS  184 (679)
T ss_dssp             HHTC--CCCHHHHHHHHHHH-----TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred             HHhhCCcchHHHHHHHHHHH-----HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccc
Confidence            888898   99999999995     2222 248888998888877666665        22346666522      22 3


Q ss_pred             cchHHHHHHHHHh---------Cc--hHHHHHHHhhhc-CCcc---hH---HHHHHhhcC----------ccchhhhHHH
Q 036356          205 VVMRSAMIVGYGL---------HE--WSAFGSFDGLLS-NEEN---EY---GTALDCSCD----------LEFLEQGKIV  256 (462)
Q Consensus       205 ~~~~~~li~~~~~---------~~--~~a~~~~~~m~~-~~~~---~~---~~ll~~~~~----------~~~~~~a~~~  256 (462)
                      ...|...+.-...         .+  +.+..+|++... |...   +|   ...-.....          ..+++.|...
T Consensus       185 ~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~  264 (679)
T 4e6h_A          185 IQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSL  264 (679)
T ss_dssp             HHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHH
Confidence            3567666654321         22  667888888877 4321   22   111111100          0122223333


Q ss_pred             HHHHHHh--CCC---------------c---------------------------c--------hHHHHHHHHhhcCCCC
Q 036356          257 HGFMIKL--GLE---------------L---------------------------E--------SDLLISLTAVCRYQPN  284 (462)
Q Consensus       257 ~~~~~~~--~~~---------------~---------------------------~--------~~~~~~l~~~~~~~~~  284 (462)
                      +.++...  ++.               |                           +        ..+|...+..|  .-+
T Consensus       265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~--p~~  342 (679)
T 4e6h_A          265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV--CFA  342 (679)
T ss_dssp             HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTC
T ss_pred             HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc--CCC
Confidence            3332211  110               0                           0        01233333333  346


Q ss_pred             HhHHHHHHHHHHcCCChhHHH-HHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC----------
Q 036356          285 VTLWNAMISGYAKNGYAEEAV-KLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD----------  353 (462)
Q Consensus       285 ~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------  353 (462)
                      ...|-..+..+.+.|+.++|. ++|++.+     . .++.+...|-..+....+.|+++.|..+|+.+.+          
T Consensus       343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi-----~-~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~  416 (679)
T 4e6h_A          343 PEIWFNMANYQGEKNTDSTVITKYLKLGQ-----Q-CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALM  416 (679)
T ss_dssp             HHHHHHHHHHHHHHSCCTTHHHHHHHHHH-----H-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHH-----H-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence            677777777788889988996 9998843     2 2334566677788888899999999999998763          


Q ss_pred             ---CC------------ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHhC
Q 036356          354 ---KD------------VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA-GYSNHAFKFIMNM  417 (462)
Q Consensus       354 ---~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m  417 (462)
                         |+            ...|...+....+.|..+.|..+|.+..+.--.+....|...+..-.+. ++++.|.++|+..
T Consensus       417 ~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~  496 (679)
T 4e6h_A          417 EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELG  496 (679)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred             hccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence               31            2357788888888899999999999998851111234444333333344 4599999999987


Q ss_pred             --CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcC
Q 036356          418 --PIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEG  453 (462)
Q Consensus       418 --~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  453 (462)
                        ...-+...|...+.-....|+.+.|...+.+.+...
T Consensus       497 Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~  534 (679)
T 4e6h_A          497 LKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI  534 (679)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred             HHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence              333456677888888888899999998887766543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.75  E-value=1.1e-07  Score=73.47  Aligned_cols=90  Identities=11%  Similarity=0.095  Sum_probs=42.7

Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHc
Q 036356          359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PI-ELRLSVRRALLSAWKI  435 (462)
Q Consensus       359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l~~~~~~  435 (462)
                      |..+...+...|++++|...++++...  .|+ ...+..+...+...|++++|.+.++++ .. ..+...+..+...+..
T Consensus        38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  115 (136)
T 2fo7_A           38 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK  115 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            334444444445555555555554442  222 334444555555555555555555544 11 1234445555555555


Q ss_pred             cCChHHHHHHHHhhh
Q 036356          436 PMQQWENMLQTIRGI  450 (462)
Q Consensus       436 ~~~~~~a~~~~~~~~  450 (462)
                      .|+.++|...+.+++
T Consensus       116 ~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A          116 QGDYDEAIEYYQKAL  130 (136)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHH
Confidence            555555555554443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.70  E-value=1.6e-07  Score=72.48  Aligned_cols=122  Identities=16%  Similarity=0.285  Sum_probs=61.9

Q ss_pred             HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHH
Q 036356          288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTV  364 (462)
Q Consensus       288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~  364 (462)
                      |..+...+...|++++|..+|.+.+     ..+ +.+...+..+...+...|++++|..+|+++.+   .+...+..+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   77 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKAL-----ELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN   77 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHH-----HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHH-----HcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            3334444444455555555554421     111 11233444444444555555555555544431   23334555555


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          365 GYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       365 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .+...|++++|.+.++++.+  ..| +...+..+...+.+.|++++|.+.++++
T Consensus        78 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           78 AYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             HHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            66666666666666666655  223 2455566666666666666666666654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.61  E-value=2.7e-07  Score=80.97  Aligned_cols=167  Identities=10%  Similarity=-0.037  Sum_probs=107.5

Q ss_pred             chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCC-HhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356          235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN-VTLWNAMISGYAKNGYAEEAVKLFPKWMD  313 (462)
Q Consensus       235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~  313 (462)
                      ..+......+.+.|++++|...|+.+.+....               .|. ...+..+..+|.+.|++++|...|++.+ 
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l-   79 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT---------------HEWAADAQFYLARAYYQNKEYLLAASEYERFI-   79 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC---------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---------------CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH-
Confidence            34444555566677777777777777664311               011 4556666667777777777777777743 


Q ss_pred             HHHHhhCC-CC-chhHHHHHHHHHHh--------cCCcchHHHHhccCCC--CC-ccch-----------------HHHH
Q 036356          314 YYIGKSEY-RN-NVIVNTVLIDMYAK--------CGSVDLAPMFFDRTLD--KD-VVMR-----------------SAMT  363 (462)
Q Consensus       314 ~~~~~~~~-~p-~~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~--~~-~~~~-----------------~~li  363 (462)
                          .... .| ....+..+..++..        .|++++|...|++..+  |+ ...+                 ..+.
T Consensus        80 ----~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la  155 (261)
T 3qky_A           80 ----QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAA  155 (261)
T ss_dssp             ----HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                2211 11 23445555666666        7777777777776652  32 2223                 4557


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhc----------CChHHHHHHHHhC-CCCCCH
Q 036356          364 VGYGLHGLGEEGWVLFHHIRKHGIEPR----HQHYARVVDLLARA----------GYSNHAFKFIMNM-PIELRL  423 (462)
Q Consensus       364 ~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~m-~~~p~~  423 (462)
                      ..|.+.|++++|...|++..+  ..|+    ...+..+..+|...          |++++|...+++. ...|+.
T Consensus       156 ~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          156 RLYERRELYEAAAVTYEAVFD--AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHccCHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence            788899999999999999988  4454    45677788888766          8889999999887 334543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.58  E-value=7.2e-07  Score=72.96  Aligned_cols=155  Identities=11%  Similarity=0.062  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--CCccchHHHH
Q 036356          287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMT  363 (462)
Q Consensus       287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li  363 (462)
                      .+......+.+.|++++|...|++.+.       ..| +...+..+...|...|++++|...|++..+  |+.. +..+.
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~-------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~   79 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSD-------ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS-YKSLI   79 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCH-------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHH-HHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChH-HHHHH
Confidence            455666788899999999999988542       123 467888899999999999999999999874  4322 22222


Q ss_pred             H-H-HHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHcc
Q 036356          364 V-G-YGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR---LSVRRALLSAWKIP  436 (462)
Q Consensus       364 ~-~-~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l~~~~~~~  436 (462)
                      . . +...+....|...+++..+  ..|+ ...+..+...+...|++++|...+++. ...|+   ...+..+...+...
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~  157 (176)
T 2r5s_A           80 AKLELHQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL  157 (176)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence            1 1 2232344557889999888  6786 788999999999999999999999998 55664   55899999999999


Q ss_pred             CChHHHHHHHHhhhh
Q 036356          437 MQQWENMLQTIRGID  451 (462)
Q Consensus       437 ~~~~~a~~~~~~~~~  451 (462)
                      |+.++|+..+.+.+.
T Consensus       158 g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          158 GQGNAIASKYRRQLY  172 (176)
T ss_dssp             CSSCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHH
Confidence            999999988876543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.57  E-value=1e-06  Score=88.61  Aligned_cols=168  Identities=12%  Similarity=-0.020  Sum_probs=138.0

Q ss_pred             cCccchhhhHHHHHHHH--------HhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHH
Q 036356          245 CDLEFLEQGKIVHGFMI--------KLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI  316 (462)
Q Consensus       245 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  316 (462)
                      ...|++++|.+.++...        +..                 +.+...|..+...|.+.|++++|+..|++.+.   
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-----------------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---  461 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-----------------SESVELPLMEVRALLDLGDVAKATRKLDDLAE---  461 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-----------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH---
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-----------------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc---
Confidence            78899999999999988        321                 24567888889999999999999999998542   


Q ss_pred             HhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-Hh
Q 036356          317 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQ  392 (462)
Q Consensus       317 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~  392 (462)
                        .. .-+...|..+..+|...|++++|...|++..+  | +...|..+..+|.+.|++++ .+.|++..+  ..|+ ..
T Consensus       462 --~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~  535 (681)
T 2pzi_A          462 --RV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVIS  535 (681)
T ss_dssp             --HH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHH
T ss_pred             --cC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHH
Confidence              21 22567888899999999999999999998763  4 66788999999999999999 999999998  6776 67


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHccCC
Q 036356          393 HYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLSAWKIPMQ  438 (462)
Q Consensus       393 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~  438 (462)
                      .|..+..++.+.|++++|++.+++. ...|+ ...|..+..++...++
T Consensus       536 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          536 AAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            8999999999999999999999998 67776 4577777777766554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.55  E-value=1.3e-06  Score=77.04  Aligned_cols=44  Identities=14%  Similarity=0.080  Sum_probs=23.3

Q ss_pred             HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCccc
Q 036356          141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL  192 (462)
Q Consensus       141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  192 (462)
                      |+-.--.|++..++.-...+       ....++ ..-.-+.++|...|+++.
T Consensus        20 ikn~fy~G~yq~~i~e~~~~-------~~~~~~-~~~~~~~Rs~iAlg~~~~   63 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEKF-------SKVTDN-TLLFYKAKTLLALGQYQS   63 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHTS-------SCCCCH-HHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHhhHHHHHHHHHHhc-------CccchH-HHHHHHHHHHHHcCCCcc
Confidence            34444567777777644332       111222 222235577888887775

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.53  E-value=2.9e-06  Score=74.92  Aligned_cols=128  Identities=9%  Similarity=0.047  Sum_probs=76.0

Q ss_pred             CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC-CCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-----
Q 036356          283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-----  354 (462)
Q Consensus       283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-----  354 (462)
                      ++..++..+..++...|++++|++++.+.     ...+. .-+...+..++..+.+.|+.+.|.+.+++|.+  |     
T Consensus        98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~-----i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~  172 (310)
T 3mv2_B           98 NSPYELYLLATAQAILGDLDKSLETCVEG-----IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG  172 (310)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHH-----HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHH-----hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc
Confidence            34444455666677777777777777662     22222 12566666677777777777777777777653  3     


Q ss_pred             CccchHHHHHH--HHhcC--ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          355 DVVMRSAMTVG--YGLHG--LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       355 ~~~~~~~li~~--~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +..+...|..+  ....|  ++++|..+|+++.+  -.|+..+-..++.++...|++++|.+.++.+
T Consensus       173 ~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l  237 (310)
T 3mv2_B          173 DNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELL  237 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            13344444444  22223  67777777777665  3455344444444677777777777777654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.53  E-value=1.6e-06  Score=73.21  Aligned_cols=123  Identities=10%  Similarity=-0.119  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHH
Q 036356          286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAM  362 (462)
Q Consensus       286 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l  362 (462)
                      ..+..+...+...|++++|...|.+.         +.|+...|..+...|.+.|++++|...|++..+   .+...|..+
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l   77 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAV---------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR   77 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTS---------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHH---------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            34445555566666666666666551         244555566666666666666666666655442   234455555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCC--------------CCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          363 TVGYGLHGLGEEGWVLFHHIRKHG--------------IEPR-HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       363 i~~~~~~~~~~~a~~~~~~m~~~g--------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      ...|...|++++|.+.|++..+..              ..|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus        78 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            666666666666666666665521              1111 245555555666666666666665554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.52  E-value=2.2e-06  Score=76.28  Aligned_cols=159  Identities=9%  Similarity=0.023  Sum_probs=127.6

Q ss_pred             CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--CCccch
Q 036356          283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMR  359 (462)
Q Consensus       283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~  359 (462)
                      .+...+..+...+.+.|++++|...|++.+.     .  .| +...+..+...|.+.|++++|...+++...  |+....
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-----~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~  187 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQ-----L--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ  187 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----H--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHH-----h--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH
Confidence            4556677778889999999999999999532     2  23 467788899999999999999999999874  543322


Q ss_pred             HH-HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 036356          360 SA-MTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR---LSVRRALLSAW  433 (462)
Q Consensus       360 ~~-li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l~~~~  433 (462)
                      .. ....+...++.+.|...+++...  ..|+ ...+..+...+...|++++|...++++ ...|+   ...+..+...+
T Consensus       188 ~~~~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~  265 (287)
T 3qou_A          188 GLVAQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL  265 (287)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence            22 22336677888889999999888  6676 788999999999999999999999998 44444   67899999999


Q ss_pred             HccCChHHHHHHHHhhh
Q 036356          434 KIPMQQWENMLQTIRGI  450 (462)
Q Consensus       434 ~~~~~~~~a~~~~~~~~  450 (462)
                      ...|+.++|+..+.+.+
T Consensus       266 ~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          266 AALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHCTTCHHHHHHHHHH
T ss_pred             HHcCCCCcHHHHHHHHH
Confidence            99999999988776654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.52  E-value=2.2e-06  Score=77.14  Aligned_cols=212  Identities=8%  Similarity=-0.098  Sum_probs=107.1

Q ss_pred             CccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCe----eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCC
Q 036356           95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV----TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY  170 (462)
Q Consensus        95 ~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  170 (462)
                      ..|++++|.+++++..+....  .      +.+  ..++.    ..|+.....|...|++++|...|.+.... ....+-
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~--~------~~~--~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~-~~~~~~   71 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKT--S------FMK--WKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEA-HANNRS   71 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCC--C------SSS--CSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTC
T ss_pred             ccchHHHHHHHHHHHHHHccc--c------ccC--CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHcCC
Confidence            357788888888887764320  0      000  00111    13444555566666666666666654100 001111


Q ss_pred             CC-CchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcC--CcchHHHHHHhhcCc
Q 036356          171 RN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN--EENEYGTALDCSCDL  247 (462)
Q Consensus       171 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~--~~~~~~~ll~~~~~~  247 (462)
                      .+ -..+|+.+...|.+.|++++|+..|++..                      .++.+...+  -..++..+...|.+ 
T Consensus        72 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al----------------------~l~~~~g~~~~~a~~~~~lg~~~~~-  128 (307)
T 2ifu_A           72 LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS----------------------VMYVENGTPDTAAMALDRAGKLMEP-  128 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH----------------------HHHHTTTCHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHHHc-
Confidence            11 13355556666666666666666655422                      111111111  12345566667777 


Q ss_pred             cchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hh
Q 036356          248 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VI  326 (462)
Q Consensus       248 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~  326 (462)
                      |++++|...|+...+.....+..           .....+++.+...|.+.|++++|+..|++.+.... ..+..+. ..
T Consensus       129 g~~~~A~~~~~~Al~~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~  196 (307)
T 2ifu_A          129 LDLSKAVHLYQQAAAVFENEERL-----------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK-EMENYPTCYK  196 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCh-----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCChhHHHH
Confidence            88888888887776532110000           00135677777778888888888888877543211 1111111 12


Q ss_pred             HHHHHHHHHHhcCCcchHHHHhccCC
Q 036356          327 VNTVLIDMYAKCGSVDLAPMFFDRTL  352 (462)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~~~  352 (462)
                      .+..+...+...|++++|...|++..
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            34444445555566666666555443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.51  E-value=2.9e-06  Score=71.58  Aligned_cols=124  Identities=10%  Similarity=-0.149  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcC
Q 036356          327 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAG  405 (462)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g  405 (462)
                      .+..+...+...|++++|...|++..+++...|..+...|...|++++|.+.+++..+  ..|+ ...|..+...|...|
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~   85 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTE   85 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcc
Confidence            3445677788899999999999999888888899999999999999999999999888  4455 678889999999999


Q ss_pred             ChHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          406 YSNHAFKFIMNM-PIEL-----------------RLSVRRALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       406 ~~~~A~~~~~~m-~~~p-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      ++++|.+.+++. ...|                 ....+..+..++...|++++|...+.+.+..
T Consensus        86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            999999999887 2222                 2268888999999999999999888776543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.51  E-value=2.1e-06  Score=73.33  Aligned_cols=181  Identities=9%  Similarity=-0.089  Sum_probs=104.1

Q ss_pred             hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCC-CHhHHHHHHHHHHcCCChhHHHHHhhHHHHH
Q 036356          236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-NVTLWNAMISGYAKNGYAEEAVKLFPKWMDY  314 (462)
Q Consensus       236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  314 (462)
                      .+..+...+.+.|++++|...|+.+.+....               .| ....+..+..+|.+.|++++|...|++.+  
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~---------------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l--   68 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRYPF---------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI--   68 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--
Confidence            3444556677788888888888888876421               11 13467777888888889999988888843  


Q ss_pred             HHHhhCC-CCch-hHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 036356          315 YIGKSEY-RNNV-IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQ  392 (462)
Q Consensus       315 ~~~~~~~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  392 (462)
                         +... .+.. ..+..+..++.+.|.-     .++        .|..+...+...|++++|...|+++.+  ..|+..
T Consensus        69 ---~~~P~~~~~~~a~~~~g~~~~~~~~~-----~~~--------~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~  130 (225)
T 2yhc_A           69 ---RLNPTHPNIDYVMYMRGLTNMALDDS-----ALQ--------GFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQ  130 (225)
T ss_dssp             ---HHCTTCTTHHHHHHHHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHT--TCTTCT
T ss_pred             ---HHCcCCCcHHHHHHHHHHHHHhhhhh-----hhh--------hhhccchhhcCcHHHHHHHHHHHHHHH--HCcCCh
Confidence               2221 1111 2333444444442210     000        111222233344556666666666665  334421


Q ss_pred             -HH-----------------HHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356          393 -HY-----------------ARVVDLLARAGYSNHAFKFIMNM-PIELR----LSVRRALLSAWKIPMQQWENMLQTIRG  449 (462)
Q Consensus       393 -~~-----------------~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~  449 (462)
                       .+                 ..+...|.+.|++++|+..++++ ...|+    ...+..+..++.+.|+.++|+..+...
T Consensus       131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l  210 (225)
T 2yhc_A          131 YTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII  210 (225)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence             11                 34566778888888888888877 33343    246777888888888888888766544


Q ss_pred             hh
Q 036356          450 ID  451 (462)
Q Consensus       450 ~~  451 (462)
                      ..
T Consensus       211 ~~  212 (225)
T 2yhc_A          211 AA  212 (225)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.50  E-value=6.9e-07  Score=73.10  Aligned_cols=155  Identities=13%  Similarity=0.035  Sum_probs=117.4

Q ss_pred             hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHH
Q 036356          236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY  315 (462)
Q Consensus       236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  315 (462)
                      .+......+.+.|++++|...++...+..                 +.+...+..+...+.+.|++++|...|++.+   
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----------------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~---   67 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-----------------QSRGDVKLAKADCLLETKQFELAQELLATIP---   67 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHH-----------------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC---
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh---
Confidence            34555667788999999999999887753                 2467889999999999999999999998842   


Q ss_pred             HHhhCCCCchhHHHHHHHH-HHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 036356          316 IGKSEYRNNVIVNTVLIDM-YAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-  390 (462)
Q Consensus       316 ~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-  390 (462)
                        .  ..|+...+..+... +...++...|...+++..  .| +...+..+...+...|++++|...|+++.+  ..|+ 
T Consensus        68 --~--~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~  141 (176)
T 2r5s_A           68 --L--EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK--VNLGA  141 (176)
T ss_dssp             --G--GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTT
T ss_pred             --h--ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCccc
Confidence              2  22333333222211 223334456788887765  34 567888999999999999999999999998  5554 


Q ss_pred             --HhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356          391 --HQHYARVVDLLARAGYSNHAFKFIMN  416 (462)
Q Consensus       391 --~~~~~~li~~~~~~g~~~~A~~~~~~  416 (462)
                        ...+..+...+...|+.++|...+++
T Consensus       142 ~~~~a~~~l~~~~~~~g~~~~A~~~y~~  169 (176)
T 2r5s_A          142 QDGEVKKTFMDILSALGQGNAIASKYRR  169 (176)
T ss_dssp             TTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence              55889999999999999999998875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.50  E-value=8e-07  Score=74.94  Aligned_cols=167  Identities=11%  Similarity=0.023  Sum_probs=117.8

Q ss_pred             HHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHH----------------HHHHHHcCCChhH
Q 036356          240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA----------------MISGYAKNGYAEE  303 (462)
Q Consensus       240 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~  303 (462)
                      ....+.+.|++++|...|+...+...                 .+...|..                +..+|.+.|++++
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~   72 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIALNI-----------------DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDK   72 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCH-----------------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHH
Confidence            34456678999999999999887641                 12334444                7888999999999


Q ss_pred             HHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCC--hHHHHHH
Q 036356          304 AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGL--GEEGWVL  378 (462)
Q Consensus       304 a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~--~~~a~~~  378 (462)
                      |...|++.+     ... +-+...+..+..+|...|++++|...|++..+  | +...|..+...|...|+  .+.+...
T Consensus        73 A~~~~~~al-----~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~  146 (208)
T 3urz_A           73 AYLFYKELL-----QKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETD  146 (208)
T ss_dssp             HHHHHHHHH-----HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-----HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            999999853     222 22577888899999999999999999998763  4 56678888887766554  3445555


Q ss_pred             HHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036356          379 FHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLS  431 (462)
Q Consensus       379 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~  431 (462)
                      +.....  ..|....+.....++...|++++|...|++. .+.|+......+.+
T Consensus       147 ~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~  198 (208)
T 3urz_A          147 YKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK  198 (208)
T ss_dssp             HC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred             HHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            555543  2333334455566677789999999999997 77888765555444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.50  E-value=1.8e-06  Score=76.84  Aligned_cols=158  Identities=9%  Similarity=-0.003  Sum_probs=126.2

Q ss_pred             CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHH
Q 036356          233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM  312 (462)
Q Consensus       233 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  312 (462)
                      +...+..+...+.+.|++++|...|+...+..                 +.+...+..+...+.+.|++++|...+++.+
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----------------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~  178 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-----------------NQNGEIGLLLAETLIALNRSEDAEAVLXTIP  178 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----------------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----------------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            34456667777889999999999999999874                 2467788999999999999999999999832


Q ss_pred             HHHHHhhCCCCchhHHHHH-HHHHHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036356          313 DYYIGKSEYRNNVIVNTVL-IDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE  388 (462)
Q Consensus       313 ~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  388 (462)
                           .  ..|+....... ...+...++.+.|...+++..  .| +...+..+...+...|++++|...|.++.+  ..
T Consensus       179 -----~--~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~--~~  249 (287)
T 3qou_A          179 -----L--QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR--XD  249 (287)
T ss_dssp             -----G--GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred             -----h--hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cc
Confidence                 2  23544333222 334667888898999998776  34 567888999999999999999999999999  55


Q ss_pred             CC---HhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356          389 PR---HQHYARVVDLLARAGYSNHAFKFIMN  416 (462)
Q Consensus       389 p~---~~~~~~li~~~~~~g~~~~A~~~~~~  416 (462)
                      |+   ...+..+...|...|+.++|...+++
T Consensus       250 p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~  280 (287)
T 3qou_A          250 LTAADGQTRXTFQEILAALGTGDALASXYRR  280 (287)
T ss_dssp             TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            65   56899999999999999999888765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.50  E-value=2.1e-06  Score=86.27  Aligned_cols=177  Identities=11%  Similarity=-0.007  Sum_probs=142.9

Q ss_pred             hHHHHHHHhhh--------c---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHH
Q 036356          220 WSAFGSFDGLL--------S---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW  288 (462)
Q Consensus       220 ~~a~~~~~~m~--------~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  288 (462)
                      ++|++.+++..        .   .+...+..+..++.+.|++++|...++...+..                 +.+...|
T Consensus       408 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~a~  470 (681)
T 2pzi_A          408 VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-----------------GWRWRLV  470 (681)
T ss_dssp             HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------------CCCHHHH
T ss_pred             HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----------------cchHHHH
Confidence            99999999987        4   456678888899999999999999999999874                 2477889


Q ss_pred             HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHH
Q 036356          289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTV  364 (462)
Q Consensus       289 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~  364 (462)
                      ..+..+|...|++++|...|++.+.       ..| +...|..+..+|.+.|++++ ...|++..+  | +...|..+..
T Consensus       471 ~~lg~~~~~~g~~~~A~~~~~~al~-------l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~  542 (681)
T 2pzi_A          471 WYRAVAELLTGDYDSATKHFTEVLD-------TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR  542 (681)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH-------HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence            9999999999999999999999542       234 46788889999999999999 999998763  3 5668899999


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCC--------hHHHHHHHHhC-CCCCCH
Q 036356          365 GYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGY--------SNHAFKFIMNM-PIELRL  423 (462)
Q Consensus       365 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~--------~~~A~~~~~~m-~~~p~~  423 (462)
                      ++.+.|++++|.+.|++..+  +.|+ ...|..+..++...|+        +++|.+.+..+ ...|+.
T Consensus       543 ~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~  609 (681)
T 2pzi_A          543 ARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV  609 (681)
T ss_dssp             HHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred             HHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence            99999999999999999887  7787 5677778788766444        77777777777 334443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.49  E-value=5.7e-06  Score=73.80  Aligned_cols=158  Identities=13%  Similarity=-0.009  Sum_probs=117.7

Q ss_pred             HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCch----hHHHHHHHHHHhcCCcchHHHHhccCCC-----CCc---
Q 036356          289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV----IVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KDV---  356 (462)
Q Consensus       289 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~---  356 (462)
                      ...+..+...|++++|..++.+.+.    .....|+.    ..+..+...+...|++++|...|++..+     ++.   
T Consensus        79 ~~~i~~~~~~~~y~~a~~~~~~~l~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  154 (293)
T 3u3w_A           79 KDQVIMLCKQKRYKEIYNKVWNELK----KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHT----TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhc----cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence            3346788999999999999998421    22223332    2344566677778899999999987652     222   


Q ss_pred             -cchHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC
Q 036356          357 -VMRSAMTVGYGLHGLGEEGWVLFHHIRKH-----GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-------PIELR  422 (462)
Q Consensus       357 -~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~  422 (462)
                       .+|+.+...|...|++++|...+++..+.     +..|. ..+|..+...|.+.|++++|.+.+++.       +..+.
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~  234 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence             25888999999999999999999998842     22233 457889999999999999999998876       22222


Q ss_pred             -HHHHHHHHHHHHccCC-hHHHHHHHHhhh
Q 036356          423 -LSVRRALLSAWKIPMQ-QWENMLQTIRGI  450 (462)
Q Consensus       423 -~~~~~~l~~~~~~~~~-~~~a~~~~~~~~  450 (462)
                       ..+|..+..++...|+ +++|+..+.+.+
T Consensus       235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence             6688999999999995 589988777653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.49  E-value=2.7e-06  Score=72.70  Aligned_cols=144  Identities=11%  Similarity=-0.059  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC-CC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--CCcc----c
Q 036356          287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVV----M  358 (462)
Q Consensus       287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~  358 (462)
                      .+..+...+.+.|++++|...|++.+     .... .| ....+..+..+|.+.|++++|...|++..+  |+..    .
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~-----~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a   80 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALD-----NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV   80 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHH-----HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-----HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence            34444555666677777777776632     2211 11 123444555566666666666666665542  2221    1


Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HH----------
Q 036356          359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS-VR----------  426 (462)
Q Consensus       359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~----------  426 (462)
                      +..+..++...+..     .+            ..|..+...+...|++++|...|+++ ...|+.. .+          
T Consensus        81 ~~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~  143 (225)
T 2yhc_A           81 MYMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK  143 (225)
T ss_dssp             HHHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH
Confidence            22222222222110     00            11122223334578999999999998 4445432 22          


Q ss_pred             -------HHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          427 -------RALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       427 -------~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                             ..+...|...|++.+|+..+.+.+..
T Consensus       144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  176 (225)
T 2yhc_A          144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD  176 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence                   34566789999999999888877654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.49  E-value=1.4e-07  Score=75.00  Aligned_cols=137  Identities=11%  Similarity=0.118  Sum_probs=103.0

Q ss_pred             HHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHh
Q 036356          293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGL  368 (462)
Q Consensus       293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~  368 (462)
                      ..+...|++++|+..+...       ....|+ ...+-.+...|.+.|++++|...|++..+   .+..+|..+..+|..
T Consensus         5 ~~~~~~~~~e~ai~~~~~a-------~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   77 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGS-------TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL   77 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHH-------SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHHh-------cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3455667888888888773       223333 44555678889999999999999998763   466788999999999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHH-HHhC-CCCC-CHHHHHHHHHHHHccCC
Q 036356          369 HGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKF-IMNM-PIEL-RLSVRRALLSAWKIPMQ  438 (462)
Q Consensus       369 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~-~~~m-~~~p-~~~~~~~l~~~~~~~~~  438 (462)
                      .|++++|...|++..+  +.|+ ...|..+...|.+.|++++|.+. +++. .+.| ++..|......+...|+
T Consensus        78 ~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           78 EENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             cCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            9999999999999998  7786 67888999999999999876665 4665 4455 45566666666666554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.47  E-value=4.8e-06  Score=70.36  Aligned_cols=176  Identities=6%  Similarity=-0.107  Sum_probs=137.8

Q ss_pred             hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHH
Q 036356          251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV  330 (462)
Q Consensus       251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  330 (462)
                      .+|.+.|....+.                   -+...+..+-..|...+++++|...|.+.     .+.|   +...+..
T Consensus         3 ~eA~~~~~~aa~~-------------------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a-----~~~g---~~~a~~~   55 (212)
T 3rjv_A            3 TEPGSQYQQQAEA-------------------GDRRAQYYLADTWVSSGDYQKAEYWAQKA-----AAQG---DGDALAL   55 (212)
T ss_dssp             -CTTHHHHHHHHT-------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH-----HHTT---CHHHHHH
T ss_pred             chHHHHHHHHHHC-------------------CCHHHHHHHHHHHhcCCCHHHHHHHHHHH-----HHcC---CHHHHHH
Confidence            4577777777775                   36677888888898999999999999994     3443   4567777


Q ss_pred             HHHHHHhcC----CcchHHHHhccCCC-CCccchHHHHHHHHh----cCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 036356          331 LIDMYAKCG----SVDLAPMFFDRTLD-KDVVMRSAMTVGYGL----HGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDL  400 (462)
Q Consensus       331 li~~~~~~g----~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~  400 (462)
                      |-..|.. +    +.++|..+|++..+ .+...+..|...|..    .+++++|.++|++..+.|... +...+..|...
T Consensus        56 lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~  134 (212)
T 3rjv_A           56 LAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLI  134 (212)
T ss_dssp             HHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence            7777877 6    89999999998765 466678888888877    889999999999999854321 26788888889


Q ss_pred             HHh----cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHcc------CChHHHHHHHHhhhhcCC
Q 036356          401 LAR----AGYSNHAFKFIMNM-PIELRLSVRRALLSAWKIP------MQQWENMLQTIRGIDEGE  454 (462)
Q Consensus       401 ~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~~  454 (462)
                      |..    .+++++|.+++++. ...++...+..|...|...      .+.++|+..+.+..+.|.
T Consensus       135 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          135 YASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            988    88999999999998 4335666777787777653      289999999988877764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.46  E-value=1.7e-06  Score=72.95  Aligned_cols=154  Identities=12%  Similarity=-0.002  Sum_probs=116.5

Q ss_pred             HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHH----------------HHHHHHhcCCcchHHHHhccC
Q 036356          289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTV----------------LIDMYAKCGSVDLAPMFFDRT  351 (462)
Q Consensus       289 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~----------------li~~~~~~g~~~~A~~~~~~~  351 (462)
                      ......+.+.|++++|...|.+.+.       ..|+ ...|..                +..+|.+.|++++|...|++.
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   80 (208)
T 3urz_A            8 LQKVSAAIEAGQNGQAVSYFRQTIA-------LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL   80 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH-------HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH-------hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3344567889999999999998542       2232 445555                888999999999999999987


Q ss_pred             CC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCC--hHHHHHHHHhC-CCCCCHH
Q 036356          352 LD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGY--SNHAFKFIMNM-PIELRLS  424 (462)
Q Consensus       352 ~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~--~~~A~~~~~~m-~~~p~~~  424 (462)
                      .+  | +...|..+...|...|++++|...|++..+  +.|+ ...|..+...|...|+  .+.+...++.. ...|...
T Consensus        81 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (208)
T 3urz_A           81 LQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQY  158 (208)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhH
Confidence            63  4 667889999999999999999999999999  7787 6788888888876654  44556666665 3233333


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356          425 VRRALLSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       425 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                      .+..+..++...|++++|+..+.+.+.
T Consensus       159 a~~~~g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          159 ARYRDGLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            455566677778999999988887764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.45  E-value=1.9e-06  Score=75.46  Aligned_cols=163  Identities=10%  Similarity=-0.051  Sum_probs=125.4

Q ss_pred             CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCC-Cc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--CC---
Q 036356          283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR-NN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD---  355 (462)
Q Consensus       283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~---  355 (462)
                      .+...+-.....+.+.|++++|...|.+.+     ..... |. ...+..+..+|.+.|++++|...|++..+  |+   
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-----~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVF-----TYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHG-----GGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-----HhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            456677778888999999999999999943     32211 11 56778888999999999999999998873  42   


Q ss_pred             -ccchHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCC-HhHH-----------------HHHHHHHHhcCChH
Q 036356          356 -VVMRSAMTVGYGL--------HGLGEEGWVLFHHIRKHGIEPR-HQHY-----------------ARVVDLLARAGYSN  408 (462)
Q Consensus       356 -~~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~-~~~~-----------------~~li~~~~~~g~~~  408 (462)
                       ...+..+..++..        .|++++|...|++..+  ..|+ ....                 ..+...|.+.|+++
T Consensus        88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~  165 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE  165 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence             2345667778888        9999999999999998  4565 2333                 45678899999999


Q ss_pred             HHHHHHHhC-CCCCC----HHHHHHHHHHHHcc----------CChHHHHHHHHhhhhc
Q 036356          409 HAFKFIMNM-PIELR----LSVRRALLSAWKIP----------MQQWENMLQTIRGIDE  452 (462)
Q Consensus       409 ~A~~~~~~m-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~  452 (462)
                      +|+..+++. ...|+    ...+..+..+|...          |++++|+..+.+.+..
T Consensus       166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            999999998 33343    45777888888866          8889999888776553

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.45  E-value=1.3e-06  Score=78.14  Aligned_cols=160  Identities=11%  Similarity=0.008  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc----hhHHHHHHHHHHhcCCcchHHHHhccCCC-----CC-
Q 036356          286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN----VIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KD-  355 (462)
Q Consensus       286 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-  355 (462)
                      ..+...+..+...|++++|.+.+.+.+.    .....++    ...+..+...+...|++++|...+++..+     .+ 
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELK----KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhc----cccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            3455667788999999999999987432    1111111    12344466677888999999999876542     12 


Q ss_pred             ---ccchHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----
Q 036356          356 ---VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPR-----HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL----  421 (462)
Q Consensus       356 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----  421 (462)
                         ..+|+.+...|...|++++|...+++..+. ...|+     ..+|..+...|.+.|++++|++.+++. .+.+    
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~  231 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence               237888999999999999999999998732 11222     258889999999999999999999886 1111    


Q ss_pred             ---CHHHHHHHHHHHHccCChHHH-HHHHHhh
Q 036356          422 ---RLSVRRALLSAWKIPMQQWEN-MLQTIRG  449 (462)
Q Consensus       422 ---~~~~~~~l~~~~~~~~~~~~a-~~~~~~~  449 (462)
                         -..+|..+...|...|+.++| ...+.+.
T Consensus       232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence               266889999999999999999 5445543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.43  E-value=5.9e-06  Score=69.77  Aligned_cols=167  Identities=8%  Similarity=-0.051  Sum_probs=128.3

Q ss_pred             HHHHHHHhhhc-CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCC
Q 036356          221 SAFGSFDGLLS-NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG  299 (462)
Q Consensus       221 ~a~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~  299 (462)
                      +|+..|++..+ .+...+..+-..+...+++++|...|+...+.|                   +...+..+-..|.. +
T Consensus         4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-------------------~~~a~~~lg~~y~~-~   63 (212)
T 3rjv_A            4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-------------------DGDALALLAQLKIR-N   63 (212)
T ss_dssp             CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHTTS-S
T ss_pred             hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHc-C
Confidence            45556665555 566777778888888899999999999988764                   45666667777777 6


Q ss_pred             ----ChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh----cCCcchHHHHhccCCCCC-----ccchHHHHHHH
Q 036356          300 ----YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTLDKD-----VVMRSAMTVGY  366 (462)
Q Consensus       300 ----~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~  366 (462)
                          +.++|..+|.+.     .+.|   +...+..|...|..    .+++++|..+|++..+.+     ...+..|...|
T Consensus        64 g~~~~~~~A~~~~~~A-----~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y  135 (212)
T 3rjv_A           64 PQQADYPQARQLAEKA-----VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIY  135 (212)
T ss_dssp             TTSCCHHHHHHHHHHH-----HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHH-----HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH
Confidence                899999999983     3333   45667777777876    789999999999887533     57888888888


Q ss_pred             Hh----cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-C-----ChHHHHHHHHhC
Q 036356          367 GL----HGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA-G-----YSNHAFKFIMNM  417 (462)
Q Consensus       367 ~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m  417 (462)
                      ..    .+++++|.+.|++..+.  ..+...+..|...|... |     ++++|..+++..
T Consensus       136 ~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          136 ASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             HHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            88    78999999999999885  34455777777777654 3     889999988876

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.40  E-value=1.5e-06  Score=78.23  Aligned_cols=158  Identities=6%  Similarity=-0.123  Sum_probs=82.2

Q ss_pred             HHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC-------C--CccchH
Q 036356          291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------K--DVVMRS  360 (462)
Q Consensus       291 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~  360 (462)
                      ....|...|++++|...|.+.+.-.. ..+-.+ -..+|+.+...|.+.|++++|...|++..+       +  -..++.
T Consensus        42 a~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~  120 (307)
T 2ifu_A           42 AAVAFKNAKQLEQAKDAYLQEAEAHA-NNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD  120 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34445566666666666665443211 111111 134556666666666666666666654431       1  123455


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHH
Q 036356          361 AMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PI---ELR----LSVRR  427 (462)
Q Consensus       361 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~  427 (462)
                      .+...|.. |++++|+..+++..+.    |-.+. ..++..+...|.+.|++++|++.+++. .+   .++    ...+.
T Consensus       121 ~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  199 (307)
T 2ifu_A          121 RAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI  199 (307)
T ss_dssp             HHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence            55566655 6666666666665542    10000 345556666666666666666666655 11   011    12444


Q ss_pred             HHHHHHHccCChHHHHHHHHhhh
Q 036356          428 ALLSAWKIPMQQWENMLQTIRGI  450 (462)
Q Consensus       428 ~l~~~~~~~~~~~~a~~~~~~~~  450 (462)
                      .+...+...|++++|+..+.+.+
T Consensus       200 ~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          200 AQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHh
Confidence            45555555566666666665544

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.38  E-value=0.00014  Score=69.71  Aligned_cols=163  Identities=10%  Similarity=-0.029  Sum_probs=105.4

Q ss_pred             CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHH---------------------HHHhh---------CCCC---chhHHH
Q 036356          283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY---------------------YIGKS---------EYRN---NVIVNT  329 (462)
Q Consensus       283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------------~~~~~---------~~~p---~~~~~~  329 (462)
                      .+...|...+..+.+.|++++|..++++.+..                     .+...         +..+   ....|.
T Consensus       211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~  290 (493)
T 2uy1_A          211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRI  290 (493)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHH
Confidence            45667777777778888888888888774321                     00000         0000   012233


Q ss_pred             HHHHHHHhcCCcchHHHHhccCCCCCccchHHHH---HHHH-hcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhc
Q 036356          330 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT---VGYG-LHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARA  404 (462)
Q Consensus       330 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~-~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~  404 (462)
                      ..+..+.+.++.+.|..+|+....|. .++...+   ..-. ..++.+.|..+|+...+.  .|+ ...+...++...+.
T Consensus       291 ~y~~~~~r~~~~~~AR~i~~~A~~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~--~~~~~~~~~~yid~e~~~  367 (493)
T 2uy1_A          291 NHLNYVLKKRGLELFRKLFIELGNEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLKEEFFLFLLRI  367 (493)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHc
Confidence            33444445677888999998884343 2333222   1111 234699999999998884  244 44566778877889


Q ss_pred             CChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356          405 GYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGI  450 (462)
Q Consensus       405 g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  450 (462)
                      |+.+.|..+|+...  .....|...+.-=...|+.+.+...+.+++
T Consensus       368 ~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          368 GDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM  411 (493)
T ss_dssp             TCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999999983  357788888887777899877776676665

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.37  E-value=2.1e-06  Score=84.51  Aligned_cols=144  Identities=13%  Similarity=-0.008  Sum_probs=71.3

Q ss_pred             CChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHH
Q 036356          299 GYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEE  374 (462)
Q Consensus       299 ~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~  374 (462)
                      |++++|.+.|++.+       ...| +...+..+...|.+.|++++|...|++..+   .+...|..+...|...|++++
T Consensus         3 g~~~~A~~~~~~al-------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~   75 (568)
T 2vsy_A            3 ADGPRELLQLRAAV-------RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAE   75 (568)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            45555666655522       1122 245555555666666666666666665442   234455555666666666666


Q ss_pred             HHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHcc---CChHHHHHHHHh
Q 036356          375 GWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIP---MQQWENMLQTIR  448 (462)
Q Consensus       375 a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~  448 (462)
                      |.+.+++..+  ..|+ ...+..+...|.+.|++++|.+.+++. ...| +...+..+...+...   |+.++|...+.+
T Consensus        76 A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~  153 (568)
T 2vsy_A           76 AAVLLQQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA  153 (568)
T ss_dssp             HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            6666666655  3443 455556666666666666666666655 2223 344555566666666   666666655555


Q ss_pred             hhh
Q 036356          449 GID  451 (462)
Q Consensus       449 ~~~  451 (462)
                      .++
T Consensus       154 al~  156 (568)
T 2vsy_A          154 AVA  156 (568)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.36  E-value=1e-06  Score=69.92  Aligned_cols=133  Identities=8%  Similarity=-0.077  Sum_probs=100.9

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +...|++++|+..++..   .+.+...+..+...|.+.|++++|...|++..+..+                 -+..+|.
T Consensus         7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-----------------~~~~a~~   69 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-----------------RDPKAHR   69 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred             HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CCHHHHH
Confidence            45667889999999888   333455777888899999999999999999998865                 5778899


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCC-CchHHHHHHHHHHhcCCcccHHHH-hhccC--CC-CcchHHHHHH
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMF-FDRTL--DK-DVVMRSAMIV  213 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~-~~~m~--~~-~~~~~~~li~  213 (462)
                      .+...|.+.|++++|+..|++.     .+  +.| +..+|..+...|.+.|+.++|.+. +++..  .| +...|.....
T Consensus        70 ~lg~~~~~~~~~~~A~~~~~~a-----l~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~  142 (150)
T 4ga2_A           70 FLGLLYELEENTDKAVECYRRS-----VE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQ  142 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH-----HH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCchHHHHHHHHHH-----HH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            9999999999999999999985     22  334 467888899999999999876654 46544  23 4455554444


Q ss_pred             HHHhC
Q 036356          214 GYGLH  218 (462)
Q Consensus       214 ~~~~~  218 (462)
                      .+...
T Consensus       143 ll~~~  147 (150)
T 4ga2_A          143 LLDCE  147 (150)
T ss_dssp             HHHTC
T ss_pred             HHHHh
Confidence            44433

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.35  E-value=3.1e-06  Score=83.31  Aligned_cols=145  Identities=7%  Similarity=-0.028  Sum_probs=109.7

Q ss_pred             ccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-ch
Q 036356          247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NV  325 (462)
Q Consensus       247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~  325 (462)
                      .|++++|.+.+++..+..                 +.+...|..+...|.+.|++++|.+.|++.+       ...| +.
T Consensus         2 ~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------~~~p~~~   57 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-----------------PQDFVAWLMLADAELGMGDTTAGEMAVQRGL-------ALHPGHP   57 (568)
T ss_dssp             ------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------TTSTTCH
T ss_pred             CccHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCH
Confidence            478889999999887753                 2467889999999999999999999999843       2334 47


Q ss_pred             hHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHH
Q 036356          326 IVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLL  401 (462)
Q Consensus       326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~  401 (462)
                      ..+..+...|...|++++|...|++..+   .+...|..+...|...|++++|.+.+++..+  ..|+ ...+..+...+
T Consensus        58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~  135 (568)
T 2vsy_A           58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWR  135 (568)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence            7888999999999999999999998763   3567888999999999999999999999998  5665 67888999999


Q ss_pred             Hhc---CChHHHHHHHHhC
Q 036356          402 ARA---GYSNHAFKFIMNM  417 (462)
Q Consensus       402 ~~~---g~~~~A~~~~~~m  417 (462)
                      ...   |++++|.+.+++.
T Consensus       136 ~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A          136 RRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHTTCCTTHHHHHHHHHHH
T ss_pred             HHhhccccHHHHHHHHHHH
Confidence            999   9999999999987

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.30  E-value=5.5e-06  Score=73.92  Aligned_cols=169  Identities=12%  Similarity=0.021  Sum_probs=120.6

Q ss_pred             hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHH
Q 036356          236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY  315 (462)
Q Consensus       236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  315 (462)
                      .+...+..+...|++++|.+.+....+.....+. ..          .....+..+...+...|++++|+..+.+.+.  
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--  143 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-FQ----------QFLQWQYYVAAYVLKKVDYEYCILELKKLLN--  143 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH-HH----------HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh-HH----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--
Confidence            3445566778899999999999888775422100 00          0112234456677888999999999988542  


Q ss_pred             HHhhCCCCc--hhHHHHHHHHHHhcCCcchHHHHhccCC-----CCC-----ccchHHHHHHHHhcCChHHHHHHHHHHH
Q 036356          316 IGKSEYRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTL-----DKD-----VVMRSAMTVGYGLHGLGEEGWVLFHHIR  383 (462)
Q Consensus       316 ~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~  383 (462)
                      .......+.  ..+|+.+...|...|++++|...|++..     .++     ..+|..+...|...|++++|...+++..
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            111111222  4588899999999999999999998765     132     2578889999999999999999999877


Q ss_pred             HC----CCCCC-HhHHHHHHHHHHhcCChHHH-HHHHHhC
Q 036356          384 KH----GIEPR-HQHYARVVDLLARAGYSNHA-FKFIMNM  417 (462)
Q Consensus       384 ~~----g~~p~-~~~~~~li~~~~~~g~~~~A-~~~~~~m  417 (462)
                      +.    +..+. ..+|..+...|.+.|++++| ...+++.
T Consensus       224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            63    22122 67889999999999999999 6666654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.27  E-value=2e-06  Score=68.09  Aligned_cols=97  Identities=9%  Similarity=-0.090  Sum_probs=59.6

Q ss_pred             hhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHH
Q 036356          325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDL  400 (462)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~  400 (462)
                      ...+..+...+.+.|++++|...|++..+  | +...|..+..+|...|++++|...|++..+  +.|+ ...|..+..+
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~  113 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHH
Confidence            34455555566666666666666665542  2 445566666666666666666666666666  5555 5566666666


Q ss_pred             HHhcCChHHHHHHHHhC-CCCCCH
Q 036356          401 LARAGYSNHAFKFIMNM-PIELRL  423 (462)
Q Consensus       401 ~~~~g~~~~A~~~~~~m-~~~p~~  423 (462)
                      |.+.|++++|.+.|++. .+.|+.
T Consensus       114 ~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCH
Confidence            66667777776666665 334444

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.24  E-value=4.1e-06  Score=64.12  Aligned_cols=88  Identities=10%  Similarity=0.024  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHh
Q 036356          328 NTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLAR  403 (462)
Q Consensus       328 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~  403 (462)
                      +......|.+.|++++|...|++..+   .+...|..+..+|.+.|++++|+..+++..+  +.|+ ...|..+..+|..
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHH
Confidence            33444445555555555555554431   2344455555555566666666666666555  4444 4555556666666


Q ss_pred             cCChHHHHHHHHhC
Q 036356          404 AGYSNHAFKFIMNM  417 (462)
Q Consensus       404 ~g~~~~A~~~~~~m  417 (462)
                      .|++++|++.|++.
T Consensus        94 ~~~~~~A~~~~~~a  107 (126)
T 4gco_A           94 MREWSKAQRAYEDA  107 (126)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            66666666666555

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.24  E-value=4.1e-05  Score=68.16  Aligned_cols=155  Identities=10%  Similarity=-0.018  Sum_probs=92.7

Q ss_pred             HHHHhCc--hHHHHHHHhhhc--C---C----cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcC
Q 036356          213 VGYGLHE--WSAFGSFDGLLS--N---E----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY  281 (462)
Q Consensus       213 ~~~~~~~--~~a~~~~~~m~~--~---~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  281 (462)
                      ..+...+  ++|...+++...  +   +    ...+..+...+...+++++|...++...+....               
T Consensus        83 ~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~---------------  147 (293)
T 3u3w_A           83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT---------------  147 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC---------------
T ss_pred             HHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc---------------
Confidence            3344444  666666666555  1   1    112334666777888999999999999885432               


Q ss_pred             CCC----HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh-CCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--
Q 036356          282 QPN----VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS-EYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--  353 (462)
Q Consensus       282 ~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--  353 (462)
                      .++    ..+++.+...|...|++++|+..|.+.+... ... +..+. ..+|..+...|.+.|++++|...+++..+  
T Consensus       148 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~  226 (293)
T 3u3w_A          148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL-EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            123    3368889999999999999999999865421 111 22222 23556666666666666666666654431  


Q ss_pred             --C-C----ccchHHHHHHHHhcCC-hHHHHHHHHHHH
Q 036356          354 --K-D----VVMRSAMTVGYGLHGL-GEEGWVLFHHIR  383 (462)
Q Consensus       354 --~-~----~~~~~~li~~~~~~~~-~~~a~~~~~~m~  383 (462)
                        . +    ..+|..+..+|.+.|+ +++|.+.+++..
T Consensus       227 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence              0 0    2234445555555553 355555554443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.24  E-value=5.3e-06  Score=65.64  Aligned_cols=122  Identities=9%  Similarity=-0.082  Sum_probs=96.6

Q ss_pred             hHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhc
Q 036356          326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARA  404 (462)
Q Consensus       326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~  404 (462)
                      .....+.+.+...+-+.++..+    ...+...+..+...+.+.|++++|...|++...  +.|+ ...|..+..+|...
T Consensus        10 ~~~~~l~~~~~~~~~l~~al~l----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~   83 (151)
T 3gyz_A           10 SISTAVIDAINSGATLKDINAI----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIK   83 (151)
T ss_dssp             HHHHHHHHHHHTSCCTGGGCCS----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCCHHHHhCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHH
Confidence            3455566666655554444321    112455778888999999999999999999998  7786 77889999999999


Q ss_pred             CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhhcC
Q 036356          405 GYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGIDEG  453 (462)
Q Consensus       405 g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  453 (462)
                      |++++|+..|++. .+.| +...|..+..+|...|++++|+..+.+.+...
T Consensus        84 g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A           84 EQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             TCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999998 4445 57789999999999999999999998876643

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.21  E-value=6.6e-06  Score=68.62  Aligned_cols=155  Identities=10%  Similarity=-0.092  Sum_probs=109.6

Q ss_pred             cCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-
Q 036356          245 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-  323 (462)
Q Consensus       245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-  323 (462)
                      ...|++++|.++++.+..  .+               ......+..+...+...|++++|...+.+.+.. ....+..| 
T Consensus         3 ~~~g~~~~A~~~~~~~~~--~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~   64 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA--HP---------------ATASGARFMLGYVYAFMDRFDEARASFQALQQQ-AQKSGDHTA   64 (203)
T ss_dssp             ----CHHHHHHHHHHHHT--ST---------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHTTCCHHH
T ss_pred             cccccHHHHHHHHHHhcC--Ch---------------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-HHHcCCcHH
Confidence            467889999996555532  11               235677888888999999999999999886542 12233333 


Q ss_pred             chhHHHHHHHHHHhcCCcchHHHHhccCCC-----C-C----ccchHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC
Q 036356          324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----K-D----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEP  389 (462)
Q Consensus       324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p  389 (462)
                      ....+..+...|...|++++|...+++..+     + +    ..++..+...+...|++++|...+++..+.    +-.+
T Consensus        65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  144 (203)
T 3gw4_A           65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV  144 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH
Confidence            356778888889999999999988887642     2 2    234677888888999999999999887653    2111


Q ss_pred             C-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          390 R-HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       390 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      . ..++..+...+...|++++|.+.+++.
T Consensus       145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a  173 (203)
T 3gw4_A          145 AIACAFRGLGDLAQQEKNLLEAQQHWLRA  173 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            1 344677888899999999998888775

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.19  E-value=9.8e-06  Score=61.22  Aligned_cols=94  Identities=20%  Similarity=0.290  Sum_probs=43.7

Q ss_pred             HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHH
Q 036356          285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSA  361 (462)
Q Consensus       285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~  361 (462)
                      ...|..+...+...|++++|.+.|.+.+     ... +.+...+..+...+.+.|++++|..+|+++.+   .+..++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKAL-----ELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            4556666666666666666666666632     111 12233444444444444444444444444331   12233334


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHH
Q 036356          362 MTVGYGLHGLGEEGWVLFHHIRK  384 (462)
Q Consensus       362 li~~~~~~~~~~~a~~~~~~m~~  384 (462)
                      +...|...|++++|...++++.+
T Consensus        83 la~~~~~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           83 LGNAYYKQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHH
Confidence            44444444444444444444443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.19  E-value=1.1e-05  Score=64.70  Aligned_cols=114  Identities=8%  Similarity=-0.011  Sum_probs=53.1

Q ss_pred             HHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCh
Q 036356          332 IDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYS  407 (462)
Q Consensus       332 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~  407 (462)
                      ...+...|++++|...|++..   ..+...|..+...+...|++++|...+++..+  ..|+ ...|..+...+...|++
T Consensus        20 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~   97 (166)
T 1a17_A           20 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKF   97 (166)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhccH
Confidence            333344444444444444332   11333444455555555555555555555555  2333 44555555555556666


Q ss_pred             HHHHHHHHhC-CCCC-CHHHH--HHHHHHHHccCChHHHHHHHH
Q 036356          408 NHAFKFIMNM-PIEL-RLSVR--RALLSAWKIPMQQWENMLQTI  447 (462)
Q Consensus       408 ~~A~~~~~~m-~~~p-~~~~~--~~l~~~~~~~~~~~~a~~~~~  447 (462)
                      ++|.+.+++. ...| +...+  ..+...+...|++++|+..+.
T Consensus        98 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  141 (166)
T 1a17_A           98 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  141 (166)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            6666655554 2222 22233  222222445555555554443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.18  E-value=9.2e-06  Score=62.32  Aligned_cols=112  Identities=11%  Similarity=0.008  Sum_probs=72.5

Q ss_pred             chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 036356          324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVD  399 (462)
Q Consensus       324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~  399 (462)
                      +...+..+...+.+.|++++|...|++..+   .+...|..+...|...|++++|.+.+++..+  ..|+ ...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ--LEPTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCchHHHHHHHH
Confidence            355566666666677777777777766542   2445666677777777777777777777776  4444 567777777


Q ss_pred             HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccC
Q 036356          400 LLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPM  437 (462)
Q Consensus       400 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~  437 (462)
                      .+.+.|++++|.+.+++. ...| +...+..+...+...|
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            777778888887777776 3334 3345555555555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.16  E-value=1.5e-05  Score=64.89  Aligned_cols=122  Identities=9%  Similarity=0.087  Sum_probs=79.9

Q ss_pred             hcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC
Q 036356          244 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN  323 (462)
Q Consensus       244 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p  323 (462)
                      +...|++++|...++...+..                 +.+...|..+...|...|++++|...|.+.+.     .. +.
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~-p~   76 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN-----------------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ-----LR-GE   76 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC-----------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HH-CS
T ss_pred             hhhccCHHHHHHHHHHHHHhC-----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cC-CC
Confidence            456788889999988888764                 24677888888888999999999999988532     11 12


Q ss_pred             chhHHHHHHHH-HHhcCCc--chHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036356          324 NVIVNTVLIDM-YAKCGSV--DLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR  390 (462)
Q Consensus       324 ~~~~~~~li~~-~~~~g~~--~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  390 (462)
                      +...+..+..+ |...|++  ++|...|++..+  | +...|..+...|...|++++|...|++..+  ..|+
T Consensus        77 ~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~  147 (177)
T 2e2e_A           77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD--LNSP  147 (177)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCCT
T ss_pred             CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCC
Confidence            45556666666 6667776  777777766542  2 344566666667777777777777777666  4444

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.15  E-value=0.00055  Score=60.80  Aligned_cols=206  Identities=11%  Similarity=-0.069  Sum_probs=155.2

Q ss_pred             hHHHHHHHhhhc--CCc-chHHHHHHhhcCcc--chhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHH
Q 036356          220 WSAFGSFDGLLS--NEE-NEYGTALDCSCDLE--FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG  294 (462)
Q Consensus       220 ~~a~~~~~~m~~--~~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~  294 (462)
                      ++|+..++.+..  |+. ..|+.--.++...+  +++++++.++.+.....                 -+...|+.--..
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-----------------k~y~aW~~R~~i  112 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-----------------KNYQIWNYRQLI  112 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-----------------TCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-----------------ccHHHHHHHHHH
Confidence            678888888777  544 34566666666777  99999999999998753                 355666665544


Q ss_pred             H----HcC---CChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcc--hHHHHhccCCC---CCccchHHH
Q 036356          295 Y----AKN---GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD--LAPMFFDRTLD---KDVVMRSAM  362 (462)
Q Consensus       295 ~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~---~~~~~~~~l  362 (462)
                      +    .+.   +++++++.++.+++     ... +-+-..|+.-..++.+.|.++  ++...++++.+   .|...|+.-
T Consensus       113 L~~~~~~l~~~~~~~~EL~~~~~~l-----~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R  186 (306)
T 3dra_A          113 IGQIMELNNNDFDPYREFDILEAML-----SSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHR  186 (306)
T ss_dssp             HHHHHHHTTTCCCTHHHHHHHHHHH-----HHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHhccccCCHHHHHHHHHHHH-----HhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4    445   78999999999854     322 346778887777888889988  99999998875   455667666


Q ss_pred             HHHHHhcCC------hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHH
Q 036356          363 TVGYGLHGL------GEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNH-AFKFIMNM-PI----ELRLSVRRAL  429 (462)
Q Consensus       363 i~~~~~~~~------~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~l  429 (462)
                      ...+.+.+.      ++++++.++++..  ..|+ ...|+-+-..+.+.|+..+ +..+.++. ..    ..+...+..+
T Consensus       187 ~~ll~~l~~~~~~~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l  264 (306)
T 3dra_A          187 FFLLFSKKHLATDNTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETL  264 (306)
T ss_dssp             HHHHHSSGGGCCHHHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred             HHHHHhccccchhhhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence            666666665      8899999999998  6676 7888888888888888555 55677776 32    3477889999


Q ss_pred             HHHHHccCChHHHHHHHHhhh
Q 036356          430 LSAWKIPMQQWENMLQTIRGI  450 (462)
Q Consensus       430 ~~~~~~~~~~~~a~~~~~~~~  450 (462)
                      ...|.+.|+.++|+..+....
T Consensus       265 a~~~~~~~~~~~A~~~~~~l~  285 (306)
T 3dra_A          265 AKIYTQQKKYNESRTVYDLLK  285 (306)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHccCCHHHHHHHHHHHH
Confidence            999999999999997776654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.14  E-value=9.9e-05  Score=70.82  Aligned_cols=336  Identities=11%  Similarity=-0.056  Sum_probs=204.5

Q ss_pred             CC-CCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhhhccCCChhhHHHHHHhh--cCCCcchHHHHHHhhcCccc-
Q 036356           23 LP-SLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGL--LSNEENEYGTALDCSCDLEF-   98 (462)
Q Consensus        23 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~~~-   98 (462)
                      .| +++.|.++|+.+++.-.            .           |+++.+..+|+..  ..|+...|...++...+.++ 
T Consensus         7 ~~~~i~~aR~vyer~l~~~P------------~-----------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~   63 (493)
T 2uy1_A            7 MGVELSSPSAIMEHARRLYM------------S-----------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQK   63 (493)
T ss_dssp             -----CCHHHHHHHHHHHHH------------T-----------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC--
T ss_pred             cCcchHHHHHHHHHHHHHCC------------C-----------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCch
Confidence            45 48888888888876542            2           7899999999999  56888899888888876663 


Q ss_pred             hhhHHHHHHHHHHh-cCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHH----hCCChhHHHHHHHHhhhhhhhhcCCCCC
Q 036356           99 LEQGKIVHGFMIKL-GLELESDLLISLTAVCRYQPNVTLRNAMISGYA----KNGYAEEAVKLFPKWMDYYIGKSEYRNN  173 (462)
Q Consensus        99 ~~~a~~~~~~m~~~-g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~  173 (462)
                      .+....+|+..... |.               ..++...|...+.-+.    ..|+++.+.++|+..     ..  +++.
T Consensus        64 ~~~i~~~fe~al~~vg~---------------d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rA-----L~--~P~~  121 (493)
T 2uy1_A           64 KFKLYEVYEFTLGQFEN---------------YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRA-----LQ--TPMG  121 (493)
T ss_dssp             --CTHHHHHHHHHHSTT---------------CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH-----HT--SCCT
T ss_pred             HHHHHHHHHHHHHHcCC---------------CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH-----Hh--Chhh
Confidence            46678888888764 43               0245677777776543    246788899999886     33  2221


Q ss_pred             --chHHHHHHHHHHh-------------cCCcccHHHHhhccCC----CCcchHHHHHHHHHhC--c-------hHHHHH
Q 036356          174 --VIVNTVLIDMYAK-------------CGSVDLAPMFFDRTLD----KDVVMRSAMIVGYGLH--E-------WSAFGS  225 (462)
Q Consensus       174 --~~~~~~li~~~~~-------------~g~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~--~-------~~a~~~  225 (462)
                        ...|......-..             .+.+..|..+++....    .+...|...+.--..+  +       ..+..+
T Consensus       122 ~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~  201 (493)
T 2uy1_A          122 SLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI  201 (493)
T ss_dssp             THHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence              1222222111100             0112222333322221    1233455544433222  1       235667


Q ss_pred             HHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhh------c--------C-------
Q 036356          226 FDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC------R--------Y-------  281 (462)
Q Consensus       226 ~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------~--------~-------  281 (462)
                      |++...  | +...|...+.-+.+.|+.+.|..+++.....  +.+...+.......      +        .       
T Consensus       202 ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~  279 (493)
T 2uy1_A          202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEK  279 (493)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC---------
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhh
Confidence            887777  4 3455666666667889999999999999988  33333332221110      0        0       


Q ss_pred             ---CCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh-cCCcchHHHHhccCCC--C-
Q 036356          282 ---QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK-CGSVDLAPMFFDRTLD--K-  354 (462)
Q Consensus       282 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~--~-  354 (462)
                         ......|...+....+.+.++.|..+|++     . .. ...+...|......-.. .++.+.|..+|+...+  | 
T Consensus       280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~-----A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~  352 (493)
T 2uy1_A          280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIE-----L-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD  352 (493)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-----H-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred             hcccccHHHHHHHHHHHHHcCCHHHHHHHHHH-----h-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence               01124566667777677889999999998     3 11 11233444332222222 3469999999997753  3 


Q ss_pred             CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +...|...+....+.|+.+.|..+|++..     .....|...++--...|+.+.+.+++++.
T Consensus       353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~  410 (493)
T 2uy1_A          353 STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK  410 (493)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            23446667777788899999999999973     24677888888777889999998887776

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.14  E-value=2.4e-05  Score=59.05  Aligned_cols=110  Identities=14%  Similarity=0.193  Sum_probs=90.0

Q ss_pred             hhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 036356          325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDL  400 (462)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~  400 (462)
                      ...+..+...+...|++++|...|+++.+   .+..++..+...+...|++++|..+++++.+  ..| +..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence            56788888999999999999999998763   3566788899999999999999999999988  345 47788999999


Q ss_pred             HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHcc
Q 036356          401 LARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIP  436 (462)
Q Consensus       401 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~  436 (462)
                      +...|++++|.+.++++ ...| +...+..+...+...
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            99999999999999998 3334 455566665555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.14  E-value=4.8e-06  Score=69.47  Aligned_cols=149  Identities=12%  Similarity=-0.064  Sum_probs=110.0

Q ss_pred             HcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---------CCccchHHHHHHH
Q 036356          296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---------KDVVMRSAMTVGY  366 (462)
Q Consensus       296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~  366 (462)
                      ...|++++|.+.++.     ... ........+..+...|...|++++|...+++..+         ....++..+...|
T Consensus         3 ~~~g~~~~A~~~~~~-----~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~   76 (203)
T 3gw4_A            3 FEAHDYALAERQAQA-----LLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE   76 (203)
T ss_dssp             ----CHHHHHHHHHH-----HHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHH-----hcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            467899999995544     211 2223567888899999999999999999987653         1334677888999


Q ss_pred             HhcCChHHHHHHHHHHHHC----CCCC-C-HhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHH
Q 036356          367 GLHGLGEEGWVLFHHIRKH----GIEP-R-HQHYARVVDLLARAGYSNHAFKFIMNM----PIELR----LSVRRALLSA  432 (462)
Q Consensus       367 ~~~~~~~~a~~~~~~m~~~----g~~p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~l~~~  432 (462)
                      ...|++++|.+.+++..+.    +-.| . ...+..+...+...|++++|.+.+++.    ...++    ..++..+...
T Consensus        77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  156 (203)
T 3gw4_A           77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDL  156 (203)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            9999999999999987764    2122 1 456788889999999999999998876    11112    2356788899


Q ss_pred             HHccCChHHHHHHHHhhh
Q 036356          433 WKIPMQQWENMLQTIRGI  450 (462)
Q Consensus       433 ~~~~~~~~~a~~~~~~~~  450 (462)
                      +...|++++|...+.+.+
T Consensus       157 ~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          157 AQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHCcCHHHHHHHHHHHH
Confidence            999999999998887654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.13  E-value=1.3e-05  Score=61.10  Aligned_cols=79  Identities=13%  Similarity=0.026  Sum_probs=38.6

Q ss_pred             chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036356          358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWK  434 (462)
Q Consensus       358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~  434 (462)
                      .|..+...+...|++++|.+.+++..+  ..|+ ...+..+...+...|++++|.+.+++. ...| +...+..+...+.
T Consensus        48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  125 (131)
T 2vyi_A           48 YFCNRAAAYSKLGNYAGAVQDCERAIC--IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL  125 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHh--cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            344444555555555555555555554  2333 445555555555555555555555554 2222 3344444444444


Q ss_pred             ccCC
Q 036356          435 IPMQ  438 (462)
Q Consensus       435 ~~~~  438 (462)
                      ..|+
T Consensus       126 ~~~~  129 (131)
T 2vyi_A          126 KLRE  129 (131)
T ss_dssp             HHTT
T ss_pred             HHhc
Confidence            4443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.12  E-value=8.1e-06  Score=66.56  Aligned_cols=117  Identities=8%  Similarity=-0.013  Sum_probs=91.5

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +...|++++|+..|+..   .+.+...|..+..++...|+++.|...|++..+...                 .+...+.
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~~   82 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-----------------ENAELYA   82 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-----------------SCHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------CCHHHHH
Confidence            66788999999999887   444667888899999999999999999999988765                 5667777


Q ss_pred             HHHHH-HHhCCCh--hHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC
Q 036356          139 AMISG-YAKNGYA--EEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL  201 (462)
Q Consensus       139 ~li~~-~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  201 (462)
                      .+... +...|++  ++|...|++.     ... .+.+...+..+...|...|++++|...|++..
T Consensus        83 ~la~~l~~~~~~~~~~~A~~~~~~a-----l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  142 (177)
T 2e2e_A           83 ALATVLYYQASQHMTAQTRAMIDKA-----LAL-DSNEITALMLLASDAFMQANYAQAIELWQKVM  142 (177)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHH-----HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHH-----HHh-CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            88888 7788998  9999999986     332 23346778888899999999999999998765

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.10  E-value=2.9e-05  Score=62.12  Aligned_cols=125  Identities=12%  Similarity=0.036  Sum_probs=99.6

Q ss_pred             HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHH
Q 036356          285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSA  361 (462)
Q Consensus       285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~  361 (462)
                      ...|..+...+...|++++|...|.+.+.     .. +.+...+..+...+...|++++|...+++..+   .+...|..
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   86 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIE-----LN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   86 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            45577778889999999999999998532     22 23577888899999999999999999998763   35667888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHH--HHHHHHHHhcCChHHHHHHHHhC
Q 036356          362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHY--ARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~--~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +...+...|++++|...+++..+  ..|+ ...+  ......+.+.|++++|.+.++..
T Consensus        87 ~a~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           87 RAASNMALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            99999999999999999999998  4554 3444  33444477889999999988764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.08  E-value=0.0003  Score=62.47  Aligned_cols=216  Identities=8%  Similarity=-0.028  Sum_probs=129.3

Q ss_pred             cchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCC--ChhHHHHHHHHhhhhhhhhcCCCCCc
Q 036356           97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNG--YAEEAVKLFPKWMDYYIGKSEYRNNV  174 (462)
Q Consensus        97 ~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~  174 (462)
                      ...++|.++++.++...+                 -+...|+.--..+...|  ++++++++++..     ... .+-+.
T Consensus        47 e~s~~aL~~t~~~L~~nP-----------------~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~-----L~~-nPk~y  103 (306)
T 3dra_A           47 EYSERALHITELGINELA-----------------SHYTIWIYRFNILKNLPNRNLYDELDWCEEI-----ALD-NEKNY  103 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHH-----HHH-CTTCC
T ss_pred             CCCHHHHHHHHHHHHHCc-----------------HHHHHHHHHHHHHHHcccccHHHHHHHHHHH-----HHH-CcccH
Confidence            345689999999998865                 45566887777788888  999999999996     332 23345


Q ss_pred             hHHHHHHHHH----Hhc---CCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCc
Q 036356          175 IVNTVLIDMY----AKC---GSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDL  247 (462)
Q Consensus       175 ~~~~~li~~~----~~~---g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~  247 (462)
                      .+|+.--..+    .+.   +++++++.+++++.+.++..|.+                          |+.-.-.+.+.
T Consensus       104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~a--------------------------W~~R~~vl~~l  157 (306)
T 3dra_A          104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHV--------------------------WSYRKWLVDTF  157 (306)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHH--------------------------HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHH--------------------------HHHHHHHHHHh
Confidence            5565555544    444   67888888888777544433332                          22212222223


Q ss_pred             cchh--hhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC------hhHHHHHhhHHHHHHHHhh
Q 036356          248 EFLE--QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY------AEEAVKLFPKWMDYYIGKS  319 (462)
Q Consensus       248 ~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~~~~~~~~~~  319 (462)
                      |.++  ++++.++.+.+...                 -|...|+.-...+.+.++      ++++++.+.+.+.     .
T Consensus       158 ~~~~~~~EL~~~~~~i~~d~-----------------~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~-----~  215 (306)
T 3dra_A          158 DLHNDAKELSFVDKVIDTDL-----------------KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV-----K  215 (306)
T ss_dssp             TCTTCHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH-----H
T ss_pred             cccChHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH-----h
Confidence            3344  55666666666555                 355555554444555554      6666666665331     1


Q ss_pred             CCCCchhHHHHHHHHHHhcCCcch-HHHHhccCCC------CCccchHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356          320 EYRNNVIVNTVLIDMYAKCGSVDL-APMFFDRTLD------KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK  384 (462)
Q Consensus       320 ~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  384 (462)
                      . .-|...|+-+-..+.+.|+... +..+.++..+      .+...+..+...|.+.|+.++|.++++.+.+
T Consensus       216 ~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          216 C-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             C-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             C-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            1 2345566666666666665333 3344444432      2444566677777777888888888888764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.08  E-value=6.4e-06  Score=72.96  Aligned_cols=187  Identities=13%  Similarity=-0.063  Sum_probs=116.2

Q ss_pred             CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356           82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM  161 (462)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  161 (462)
                      +...+..+...+.+.|++++|...|++..+...                 .+...|..+..++.+.|++++|+..+++. 
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a-   64 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-----------------LVAVYYTNRALCYLKMQQPEQALADCRRA-   64 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHH-
Confidence            445677777888888999999999999888754                 46778888888899999999999999885 


Q ss_pred             hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--C-CcchHHHHHHHHHhCc-hHHHHHHHhhhcCCcchH
Q 036356          162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMIVGYGLHE-WSAFGSFDGLLSNEENEY  237 (462)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~-~~a~~~~~~m~~~~~~~~  237 (462)
                          .. -.+.+...+..+..+|...|++++|...|++..+  | +...+...+....+.. ............++....
T Consensus        65 ----l~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  139 (281)
T 2c2l_A           65 ----LE-LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESEL  139 (281)
T ss_dssp             ----TT-SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHH
T ss_pred             ----HH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence                22 2233567788888899999999999998887653  2 1112222222222111 111111222222433333


Q ss_pred             HHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCC-HhHHHHHHHHHHcC-CChhHHHHHhhH
Q 036356          238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN-VTLWNAMISGYAKN-GYAEEAVKLFPK  310 (462)
Q Consensus       238 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~li~~~~~~-~~~~~a~~~~~~  310 (462)
                      ...+..+. .|+.++|.+.++...+..                  |+ ......+-..+.+. +++++|.++|..
T Consensus       140 ~~~l~~l~-~~~~~~A~~~~~~al~~~------------------p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~  195 (281)
T 2c2l_A          140 HSYLTRLI-AAERERELEECQRNHEGH------------------EDDGHIRAQQACIEAKHDKYMADMDELFSQ  195 (281)
T ss_dssp             HHHHHHHH-HHHHHHHHTTTSGGGTTT------------------SCHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHhhhccc------------------cchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333332 678888887777666532                  43 33333333334444 567778888866

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.07  E-value=6.1e-05  Score=55.48  Aligned_cols=97  Identities=14%  Similarity=-0.031  Sum_probs=77.9

Q ss_pred             CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHH
Q 036356          355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL---RLSVRRAL  429 (462)
Q Consensus       355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~l  429 (462)
                      +...|..+...+...|++++|...+++..+  ..|+ ...|..+...+...|++++|.+.+++. ...|   +...|..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            456677888888899999999999998887  4454 677888888899999999999998887 3334   47788888


Q ss_pred             HHHHHcc-CChHHHHHHHHhhhhcC
Q 036356          430 LSAWKIP-MQQWENMLQTIRGIDEG  453 (462)
Q Consensus       430 ~~~~~~~-~~~~~a~~~~~~~~~~~  453 (462)
                      ...+... |++++|+..+.+.....
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence            9999999 99999988887766543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.06  E-value=2.1e-06  Score=71.64  Aligned_cols=157  Identities=10%  Similarity=0.008  Sum_probs=98.4

Q ss_pred             HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-Cc--------------
Q 036356          294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DV--------------  356 (462)
Q Consensus       294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~--------------  356 (462)
                      .....|+++++.+.+......      .......+..+...+.+.|++++|...|++..+  | +.              
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~   86 (198)
T 2fbn_A           13 GRENLYFQGAKKSIYDYTDEE------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI   86 (198)
T ss_dssp             ---------CCCSGGGCCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred             hhhhhhhccccCchhhCCHHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence            344556677777776542111      111245566777788888999999988887652  2 22              


Q ss_pred             --cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036356          357 --VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLS  431 (462)
Q Consensus       357 --~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~  431 (462)
                        ..|..+..+|...|++++|...+++..+  +.|+ ...|..+..+|...|++++|.+.+++. .+.| +...+..+..
T Consensus        87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  164 (198)
T 2fbn_A           87 EISCNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  164 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence              5778888899999999999999999988  5565 778889999999999999999999987 4444 5667777777


Q ss_pred             HHHccCChHHHH-HHHHhhhhcCCCCCC
Q 036356          432 AWKIPMQQWENM-LQTIRGIDEGEKTDK  458 (462)
Q Consensus       432 ~~~~~~~~~~a~-~~~~~~~~~~~~pd~  458 (462)
                      .+...++..++. ..+..+...|...+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~  192 (198)
T 2fbn_A          165 CVNKLKEARKKDKLTFGGMFDKGPLYEE  192 (198)
T ss_dssp             HHHHHHHHHC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhhc
Confidence            777777766665 344445555444433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.06  E-value=3.6e-05  Score=66.96  Aligned_cols=182  Identities=7%  Similarity=-0.111  Sum_probs=126.4

Q ss_pred             CccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHH-------HHHHHcCCChhHHHHHhhHHHHHHHHh
Q 036356          246 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM-------ISGYAKNGYAEEAVKLFPKWMDYYIGK  318 (462)
Q Consensus       246 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~  318 (462)
                      ..++...|.+.|..+.+...                 -....|..+       ...+.+.++..+++..+.+       .
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP-----------------~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~-------~   73 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDE-----------------SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSG-------S   73 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHH-------T
T ss_pred             cCCCHHHHHHHHHHHHHhCh-----------------hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHH-------H
Confidence            68999999999999998752                 345667766       3445544555555444444       2


Q ss_pred             hCCCCc----------------------hhHHHHHHHHHHhcCCcchHHHHhccCCC--CCccchHHHHHHHHhcCChHH
Q 036356          319 SEYRNN----------------------VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMTVGYGLHGLGEE  374 (462)
Q Consensus       319 ~~~~p~----------------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~  374 (462)
                      .++.|+                      ...+-.+...+...|++++|.++|+.+..  |+......+...+.+.+++++
T Consensus        74 l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~d  153 (282)
T 4f3v_A           74 VQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTD  153 (282)
T ss_dssp             TTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHH
T ss_pred             hcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHH
Confidence            333332                      12233456678889999999999998873  433355556667888999999


Q ss_pred             HHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHhC--C-CCCC--HHHHHHHHHHHHccCChHHHHHHHH
Q 036356          375 GWVLFHHIRKHGIEPR--HQHYARVVDLLARAGYSNHAFKFIMNM--P-IELR--LSVRRALLSAWKIPMQQWENMLQTI  447 (462)
Q Consensus       375 a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m--~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~  447 (462)
                      |+..|+...... .|.  ...+..+..++...|++++|++.|++.  + ..|.  ...+.....++.+.|+.++|...+.
T Consensus       154 A~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~  232 (282)
T 4f3v_A          154 VIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE  232 (282)
T ss_dssp             HHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999998554411 111  336777888999999999999999988  2 2253  3467788888899999999998887


Q ss_pred             hhhhc
Q 036356          448 RGIDE  452 (462)
Q Consensus       448 ~~~~~  452 (462)
                      +....
T Consensus       233 ~a~a~  237 (282)
T 4f3v_A          233 WLQTT  237 (282)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            77654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.05  E-value=2.5e-05  Score=61.61  Aligned_cols=90  Identities=11%  Similarity=-0.077  Sum_probs=53.5

Q ss_pred             hHHHHHHHHHHhcCCcchHHHHhccCC--C-CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHH
Q 036356          326 IVNTVLIDMYAKCGSVDLAPMFFDRTL--D-KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLL  401 (462)
Q Consensus       326 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~  401 (462)
                      ..+..+...+.+.|++++|...|+...  . .+...|..+..+|...|++++|...|++...  +.|+ ...|..+..+|
T Consensus        22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHH
Confidence            344445555555666666666665543  1 2444555666666666666666666666666  4454 45566666666


Q ss_pred             HhcCChHHHHHHHHhC
Q 036356          402 ARAGYSNHAFKFIMNM  417 (462)
Q Consensus       402 ~~~g~~~~A~~~~~~m  417 (462)
                      ...|++++|.+.|++.
T Consensus       100 ~~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A          100 LQXGELAEAESGLFLA  115 (148)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            6666666666666665

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.04  E-value=2.4e-05  Score=59.95  Aligned_cols=104  Identities=8%  Similarity=-0.089  Sum_probs=75.7

Q ss_pred             hccCCChhhHHHHHHhh--c-CCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL--L-SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +...|++++|+..|++.  . +.+..++..+..++...|++++|...+++..+...                 .+...+.
T Consensus        26 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------------~~~~~~~   88 (133)
T 2lni_A           26 CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-----------------TFIKGYT   88 (133)
T ss_dssp             HHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----------------CchHHHH
Confidence            77888888888888887  3 33566778888888888888888888888887754                 4567777


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcC
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG  188 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g  188 (462)
                      .+...+.+.|++++|.+.|++.     ... .+.+...+..+..++.+.|
T Consensus        89 ~la~~~~~~~~~~~A~~~~~~~-----~~~-~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           89 RKAAALEAMKDYTKAMDVYQKA-----LDL-DSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH-----HHH-CGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHH-----HHh-CCCchHHHHHHHHHHHHhc
Confidence            8888888888888888888875     222 1223455666666665554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.03  E-value=2.1e-05  Score=71.65  Aligned_cols=127  Identities=14%  Similarity=-0.001  Sum_probs=87.3

Q ss_pred             CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc--------------hhHHHHHHHHHHhcCCcchHHHHhc
Q 036356          284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN--------------VIVNTVLIDMYAKCGSVDLAPMFFD  349 (462)
Q Consensus       284 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~  349 (462)
                      +...|..+...|.+.|++++|...|.+.+.     ......              ...|..+..+|.+.|++++|...|+
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~-----~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  220 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS-----WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN  220 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            456788888889999999999999988542     221111              3667777777777777777777777


Q ss_pred             cCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHH-HHHHhC
Q 036356          350 RTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAF-KFIMNM  417 (462)
Q Consensus       350 ~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~-~~~~~m  417 (462)
                      +..+   .+...|..+..+|...|++++|...|++..+  +.|+ ...+..+...+.+.|++++|. ..++.|
T Consensus       221 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6652   3455667777777777777777777777776  5565 556666777777777777763 344443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.02  E-value=2.5e-05  Score=71.07  Aligned_cols=139  Identities=7%  Similarity=-0.073  Sum_probs=111.9

Q ss_pred             CCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC--CCC----------------ccc
Q 036356          298 NGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKD----------------VVM  358 (462)
Q Consensus       298 ~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~----------------~~~  358 (462)
                      .+++++|...+...+.       ..| +...+..+...|.+.|++++|...|++..  .|+                ..+
T Consensus       126 L~~~~~A~~~~~~a~~-------~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~  198 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSE-------EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS  198 (336)
T ss_dssp             EEEEECCCCGGGCCHH-------HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHH-------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHH
Confidence            3455666666655221       123 35678888899999999999999999876  344                368


Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHc
Q 036356          359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKI  435 (462)
Q Consensus       359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~  435 (462)
                      |..+..+|.+.|++++|+..+++..+  +.|+ ...|..+..+|...|++++|+..|++. .+.| +...+..+...+..
T Consensus       199 ~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  276 (336)
T 1p5q_A          199 HLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  276 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999999998  6675 788999999999999999999999998 4445 56788889999999


Q ss_pred             cCChHHHHHH
Q 036356          436 PMQQWENMLQ  445 (462)
Q Consensus       436 ~~~~~~a~~~  445 (462)
                      .|+.++|...
T Consensus       277 ~~~~~~a~~~  286 (336)
T 1p5q_A          277 IRRQLAREKK  286 (336)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.02  E-value=5.6e-05  Score=57.64  Aligned_cols=93  Identities=8%  Similarity=-0.091  Sum_probs=81.6

Q ss_pred             chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036356          358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWK  434 (462)
Q Consensus       358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~  434 (462)
                      .+......|.+.|++++|++.|++..+  +.|+ ...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            466778899999999999999999998  6676 788999999999999999999999998 4444 5778999999999


Q ss_pred             ccCChHHHHHHHHhhhhc
Q 036356          435 IPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       435 ~~~~~~~a~~~~~~~~~~  452 (462)
                      ..|++++|+..+.+.++.
T Consensus        93 ~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH
Confidence            999999999999877653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.02  E-value=5.8e-05  Score=66.75  Aligned_cols=187  Identities=10%  Similarity=-0.112  Sum_probs=120.2

Q ss_pred             cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356          234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD  313 (462)
Q Consensus       234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  313 (462)
                      ...+..+...+.+.|++++|...|+...+..                 +.+...|..+...|.+.|++++|...+.+.+ 
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-   65 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----------------PLVAVYYTNRALCYLKMQQPEQALADCRRAL-   65 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-
Confidence            3456667778888999999999999998864                 2477888889999999999999999998843 


Q ss_pred             HHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036356          314 YYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP  389 (462)
Q Consensus       314 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  389 (462)
                            ...| +...+..+..+|...|++++|...|++..+  | +...+...+....+..   ++. -+......-...
T Consensus        66 ------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~  135 (281)
T 2c2l_A           66 ------ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA---KKK-RWNSIEERRIHQ  135 (281)
T ss_dssp             ------TSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH---HHH-HHHHHHHTCCCC
T ss_pred             ------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH---HHH-HHHHHHHHHHhh
Confidence                  2344 467788888999999999999999987763  2 2223333333332221   111 222233333444


Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHcc-CChHHHHHHHHhhh
Q 036356          390 RHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVR-RALLSAWKIP-MQQWENMLQTIRGI  450 (462)
Q Consensus       390 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~l~~~~~~~-~~~~~a~~~~~~~~  450 (462)
                      +......+ ..+ ..|++++|++.++.. ...|+.... ..+...+... +.++++...+.+..
T Consensus       136 ~~~i~~~l-~~l-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~  197 (281)
T 2c2l_A          136 ESELHSYL-TRL-IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD  197 (281)
T ss_dssp             CCHHHHHH-HHH-HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             hHHHHHHH-HHH-HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44444443 333 368999999988887 666765433 3333333333 44555665554443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.99  E-value=2.6e-05  Score=61.49  Aligned_cols=82  Identities=10%  Similarity=-0.054  Sum_probs=47.6

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +...|++++|+..|+..   .+.+...|..+..++.+.|++++|...|++..+..+                 .+...|.
T Consensus        31 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----------------~~~~~~~   93 (148)
T 2vgx_A           31 QYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-----------------XEPRFPF   93 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----------------TCTHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------CCchHHH
Confidence            55566666666666655   233444555555566666666666666666665543                 3445555


Q ss_pred             HHHHHHHhCCChhHHHHHHHHh
Q 036356          139 AMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      .+..++...|++++|.+.|+..
T Consensus        94 ~lg~~~~~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A           94 HAAECLLQXGELAEAESGLFLA  115 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Confidence            5566666666666666666554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.99  E-value=2.2e-05  Score=59.77  Aligned_cols=86  Identities=10%  Similarity=-0.046  Sum_probs=45.1

Q ss_pred             HHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcC
Q 036356          330 VLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAG  405 (462)
Q Consensus       330 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g  405 (462)
                      .+...+.+.|++++|...|++..+   .+...|..+..+|.+.|++++|...+++..+  +.|+ ...|..+..++...|
T Consensus         9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~   86 (126)
T 3upv_A            9 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVK   86 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHh
Confidence            333444444444444444444331   2334455555555556666666666666555  3444 445555556666666


Q ss_pred             ChHHHHHHHHhC
Q 036356          406 YSNHAFKFIMNM  417 (462)
Q Consensus       406 ~~~~A~~~~~~m  417 (462)
                      ++++|.+.+++.
T Consensus        87 ~~~~A~~~~~~a   98 (126)
T 3upv_A           87 EYASALETLDAA   98 (126)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            666666665554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.98  E-value=3.9e-05  Score=58.36  Aligned_cols=106  Identities=10%  Similarity=-0.107  Sum_probs=68.3

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +...|++++|+..|++.   .+.+...+..+..++...|++++|...+++..+...                 .+...+.
T Consensus        22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~   84 (131)
T 2vyi_A           22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-----------------AYSKAYG   84 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-----------------cCHHHHH
Confidence            66677777777777776   333455666667777777777777777777776643                 4455666


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCc
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV  190 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  190 (462)
                      .+...+...|++++|.+.|++.     ... .+.+...+..+..++.+.|++
T Consensus        85 ~~~~~~~~~~~~~~A~~~~~~~-----~~~-~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           85 RMGLALSSLNKHVEAVAYYKKA-----LEL-DPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH-----HHH-STTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHH-----Hhc-CccchHHHHHHHHHHHHHhcC
Confidence            6677777777777777777774     222 122445566666666666654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.98  E-value=3.3e-05  Score=62.01  Aligned_cols=91  Identities=10%  Similarity=-0.037  Sum_probs=57.8

Q ss_pred             hhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHH
Q 036356          325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDL  400 (462)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~  400 (462)
                      ...+..+...+.+.|++++|...|++..+   .+...|..+..+|...|++++|+..+++..+  +.|+ ...|..+..+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence            33444455555555555555555555431   2445566666777777777777777777776  4555 5667777777


Q ss_pred             HHhcCChHHHHHHHHhC
Q 036356          401 LARAGYSNHAFKFIMNM  417 (462)
Q Consensus       401 ~~~~g~~~~A~~~~~~m  417 (462)
                      |...|++++|.+.+++.
T Consensus        89 ~~~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKG  105 (164)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHH
Confidence            77777777777777766

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.97  E-value=5.3e-05  Score=56.42  Aligned_cols=88  Identities=14%  Similarity=0.092  Sum_probs=47.3

Q ss_pred             HHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHh
Q 036356          328 NTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLAR  403 (462)
Q Consensus       328 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~  403 (462)
                      +..+...+...|++++|...|++..+   .+...|..+...+...|++++|...+++..+  ..|+ ...+..+..++..
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHH
Confidence            33344444444444444444444331   2334455555556666666666666666655  3343 4555666666666


Q ss_pred             cCChHHHHHHHHhC
Q 036356          404 AGYSNHAFKFIMNM  417 (462)
Q Consensus       404 ~g~~~~A~~~~~~m  417 (462)
                      .|++++|.+.+++.
T Consensus        85 ~~~~~~A~~~~~~~   98 (118)
T 1elw_A           85 LNRFEEAKRTYEEG   98 (118)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHH
Confidence            66666666666665

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.96  E-value=1.6e-05  Score=60.84  Aligned_cols=59  Identities=12%  Similarity=0.049  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccC
Q 036356          286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRT  351 (462)
Q Consensus       286 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~  351 (462)
                      ..+..+-..+.+.|++++|+..|.+.+.       +.| +...|+.+..+|.+.|++++|...|++.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~-------~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE-------LDPSNITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            3455555555555555555555555321       112 2344444444455555555554444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.96  E-value=5.8e-05  Score=59.86  Aligned_cols=132  Identities=14%  Similarity=0.028  Sum_probs=68.2

Q ss_pred             HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-----CC----
Q 036356          285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KD----  355 (462)
Q Consensus       285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----  355 (462)
                      ..++..+...+...|++++|...+.+.+...-...........+..+...|...|++++|...+++..+     .+    
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            345677777888899999999999886542111111111123555566666666666666666655431     11    


Q ss_pred             ccchHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356          356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHAFKFIMN  416 (462)
Q Consensus       356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~  416 (462)
                      ..++..+...+...|++++|.+.+++..+.    +..+. ...+..+...+...|++++|.+.+++
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  154 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  154 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            223444455555555555555555544432    11111 22344444444445555555444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.95  E-value=1.6e-05  Score=60.79  Aligned_cols=99  Identities=9%  Similarity=0.042  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------HhHH
Q 036356          326 IVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR--------HQHY  394 (462)
Q Consensus       326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------~~~~  394 (462)
                      ..+..+...+.+.|++++|...|++..+   .+...|..+..+|...|++++|++.+++..+  +.|+        ..+|
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHHH
Confidence            3455566666666666666666665542   2445566666666666666666666666655  2222        1345


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 036356          395 ARVVDLLARAGYSNHAFKFIMNM-PIELRLSVR  426 (462)
Q Consensus       395 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~  426 (462)
                      ..+..++...|++++|++.|++. ...||+.+.
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~  119 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV  119 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHH
Confidence            55556666666666666666654 334554443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.95  E-value=1.3e-05  Score=61.23  Aligned_cols=61  Identities=13%  Similarity=0.073  Sum_probs=30.5

Q ss_pred             HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccC
Q 036356          285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT  351 (462)
Q Consensus       285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  351 (462)
                      ...|..+...+...|++++|...|.+.+     ... +.+...+..+...|...|++++|...+++.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~-----~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   64 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAK-----ELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHH-----hcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3445555666666666666666666632     111 123344444444444555555555444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.94  E-value=6.2e-05  Score=58.07  Aligned_cols=91  Identities=7%  Similarity=-0.102  Sum_probs=49.7

Q ss_pred             hhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHH
Q 036356          325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDL  400 (462)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~  400 (462)
                      ...+..+...+...|++++|...|+...+   .+...|..+..++...|++++|...+++..+  ..|+ ...|..+..+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC   86 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHHHHHHHHH
Confidence            33444444444444444444444444331   2234455556666666666666666666665  3343 4556666666


Q ss_pred             HHhcCChHHHHHHHHhC
Q 036356          401 LARAGYSNHAFKFIMNM  417 (462)
Q Consensus       401 ~~~~g~~~~A~~~~~~m  417 (462)
                      +...|++++|...+++.
T Consensus        87 ~~~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           87 QLEMESYDEAIANLQRA  103 (137)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHH
Confidence            66666666666666655

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.92  E-value=4.6e-05  Score=59.53  Aligned_cols=89  Identities=13%  Similarity=-0.037  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHH
Q 036356          327 VNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLA  402 (462)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~  402 (462)
                      .+..+...+.+.|++++|...|+...  .| +...|..+..+|...|++++|...|++...  +.|+ ...|..+..+|.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL--MDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence            33344455556666666666666544  22 444555666666666666667666666666  4454 455666666666


Q ss_pred             hcCChHHHHHHHHhC
Q 036356          403 RAGYSNHAFKFIMNM  417 (462)
Q Consensus       403 ~~g~~~~A~~~~~~m  417 (462)
                      ..|++++|.+.++..
T Consensus        98 ~~g~~~~A~~~~~~a  112 (142)
T 2xcb_A           98 QLGDLDGAESGFYSA  112 (142)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHH
Confidence            677777776666665

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.91  E-value=4.5e-05  Score=72.02  Aligned_cols=205  Identities=7%  Similarity=-0.025  Sum_probs=135.7

Q ss_pred             HhhcCccchhhhHHHHHHHHHhCCCcchHHHHH-HHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhC
Q 036356          242 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS-LTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE  320 (462)
Q Consensus       242 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  320 (462)
                      ..+.+.|++++|.+.|..+.+............ .... ........+..+...|.+.|++++|.+.+...+.-    .+
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~----~~   86 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDK-RRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY----MM   86 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSH-HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH----HH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHH-HhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----HH
Confidence            445678999999999999887543210000000 0000 00000123677889999999999999999885431    11


Q ss_pred             CCCch----hHHHHHHHHHHhcCCcchHHHHhccCCC-----CC----ccchHHHHHHHHhcCChHHHHHHHHHHHHC--
Q 036356          321 YRNNV----IVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH--  385 (462)
Q Consensus       321 ~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--  385 (462)
                      ..++.    .+.+.+-..+...|+.+.|..+++....     .+    ..++..|...|...|++++|..++++....  
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~  166 (434)
T 4b4t_Q           87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK  166 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence            11222    2233333444567888999888876542     12    235678899999999999999999987765  


Q ss_pred             CC--CCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356          386 GI--EPR-HQHYARVVDLLARAGYSNHAFKFIMNM-------PIELR--LSVRRALLSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       386 g~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                      +.  .|. ..+|..++..|...|++++|..++++.       +..|.  ...+..+...+...|++.+|...+.+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            22  222 568889999999999999999998876       21111  34667777888888999999887776643

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.91  E-value=3.4e-05  Score=56.92  Aligned_cols=96  Identities=16%  Similarity=-0.060  Sum_probs=62.4

Q ss_pred             cchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhh
Q 036356           83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD  162 (462)
Q Consensus        83 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  162 (462)
                      ...+..+...+.+.|++++|...+++..+...                 .+...|..+...+...|++++|.+.|++.  
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a--   66 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-----------------EESKYWLMKGKALYNLERYEEAVDCYNYV--   66 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-----------------CCHHHHHHHHHHHHHccCHHHHHHHHHHH--
Confidence            44556666666677777777777777766654                 45556666677777777777777777764  


Q ss_pred             hhhhhcCCCC--CchHHHHHHHHHHhc-CCcccHHHHhhccC
Q 036356          163 YYIGKSEYRN--NVIVNTVLIDMYAKC-GSVDLAPMFFDRTL  201 (462)
Q Consensus       163 ~~~~~~~~~~--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~  201 (462)
                         .+. .+.  +...+..+..++.+. |++++|.+.+++..
T Consensus        67 ---~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           67 ---INV-IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK  104 (112)
T ss_dssp             ---HHT-SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred             ---HHh-CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence               222 122  455666677777777 77777777776655

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.87  E-value=1.3e-05  Score=66.66  Aligned_cols=153  Identities=10%  Similarity=-0.096  Sum_probs=97.3

Q ss_pred             HHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCC-Cc----
Q 036356           14 PLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSN-EE----   83 (462)
Q Consensus        14 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~-~~----   83 (462)
                      +.........++++.+.+.++.-.+....           ....+..+   +...|++++|+..|++.  ..| +.    
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~   76 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQ-----------SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD   76 (198)
T ss_dssp             --------------CCCSGGGCCHHHHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC
T ss_pred             cchhhhhhhhhhccccCchhhCCHHHHHH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccch
Confidence            34445555667788888888765544321           23334444   88899999999999988  333 33    


Q ss_pred             ------------chHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChh
Q 036356           84 ------------NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAE  151 (462)
Q Consensus        84 ------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  151 (462)
                                  ..|..+..++.+.|++++|...+++..+...                 .+...|..+..++...|+++
T Consensus        77 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~~~lg~~~~~~~~~~  139 (198)
T 2fbn_A           77 QILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-----------------NNVKALYKLGVANMYFGFLE  139 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----------------TCHHHHHHHHHHHHHHTCHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----------------ccHHHHHHHHHHHHHcccHH
Confidence                        6778888888899999999999999988765                 56778888888999999999


Q ss_pred             HHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHH-HHhhcc
Q 036356          152 EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP-MFFDRT  200 (462)
Q Consensus       152 ~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m  200 (462)
                      +|.+.|++.     ... .+.+...+..+..++...++.+++. ..+..+
T Consensus       140 ~A~~~~~~a-----l~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          140 EAKENLYKA-----ASL-NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             HHHHHHHHH-----HHH-STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHH-----HHH-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999885     222 2334567777777777777666665 334433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.86  E-value=0.00015  Score=63.08  Aligned_cols=136  Identities=10%  Similarity=-0.092  Sum_probs=103.9

Q ss_pred             HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCC-----ccchHHH
Q 036356          288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD-----VVMRSAM  362 (462)
Q Consensus       288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l  362 (462)
                      +-.+...+...|++++|.++|...     ..  ..|+......+...+.+.+++++|+..|+......     ...+..+
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~-----~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L  177 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAA-----PV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH  177 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSS-----CC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH-----Hh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence            445667788999999999999883     22  23543355556668899999999999999776432     2367778


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036356          363 TVGYGLHGLGEEGWVLFHHIRKHGIEPR--HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALL  430 (462)
Q Consensus       363 i~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~  430 (462)
                      -.++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++ ...|+...+..|.
T Consensus       178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL~  248 (282)
T 4f3v_A          178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALK  248 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHh
Confidence            8899999999999999999986443364  346777888899999999999999998 5567755555553

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.84  E-value=0.011  Score=53.21  Aligned_cols=176  Identities=9%  Similarity=-0.031  Sum_probs=120.0

Q ss_pred             cCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCC-ChhHHHHHHHHhhhhhhhhcCCCC
Q 036356           94 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNG-YAEEAVKLFPKWMDYYIGKSEYRN  172 (462)
Q Consensus        94 ~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~  172 (462)
                      .+.+..++|.++++++....+                 -+..+|+.--..+...| ++++++++++.+     . ...+-
T Consensus        65 ~~~e~se~AL~lt~~~L~~nP-----------------~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~-----L-~~nPK  121 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMNP-----------------AHYTVWQYRFSLLTSLNKSLEDELRLMNEF-----A-VQNLK  121 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHH-----H-HTTCC
T ss_pred             HhCCCCHHHHHHHHHHHHhCc-----------------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----H-HhCCC
Confidence            344456789999999998875                 56667887777777778 599999999996     3 22334


Q ss_pred             CchHHHHHHHHHHhc-C-CcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCcc--
Q 036356          173 NVIVNTVLIDMYAKC-G-SVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLE--  248 (462)
Q Consensus       173 ~~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~--  248 (462)
                      +..+|+.--..+.+. + ++++++++++++.+.|+..|.+.-                          .-.-.+.+.+  
T Consensus       122 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~--------------------------~R~wvl~~l~~~  175 (349)
T 3q7a_A          122 SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA--------------------------YLHWLYSHFSTL  175 (349)
T ss_dssp             CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH--------------------------HHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH--------------------------HHHHHHHHhccc
Confidence            566777777777776 6 888999999998876665544422                          1111111112  


Q ss_pred             ------chhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC-------hhHHHHHhhHHHHHH
Q 036356          249 ------FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY-------AEEAVKLFPKWMDYY  315 (462)
Q Consensus       249 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~~~~~~  315 (462)
                            .++++++.++.+.+...                 -|...|+.....+.+.++       ++++++.+.+.+.  
T Consensus       176 ~~~~~~~~~eELe~~~k~I~~dp-----------------~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~--  236 (349)
T 3q7a_A          176 GRISEAQWGSELDWCNEMLRVDG-----------------RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH--  236 (349)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH--
T ss_pred             cccchhhHHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH--
Confidence                  23478888888888764                 578888888888877776       5777888777432  


Q ss_pred             HHhhCCCCchhHHHHHHHHHHhcCCc
Q 036356          316 IGKSEYRNNVIVNTVLIDMYAKCGSV  341 (462)
Q Consensus       316 ~~~~~~~p~~~~~~~li~~~~~~g~~  341 (462)
                         . ..-|...|+-+-..+.+.|+.
T Consensus       237 ---~-~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          237 ---L-IPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             ---H-CTTCHHHHHHHHHHHHHTTCC
T ss_pred             ---h-CCCCHHHHHHHHHHHHhcCCC
Confidence               1 223567777766666666654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.83  E-value=0.00019  Score=54.46  Aligned_cols=93  Identities=9%  Similarity=-0.115  Sum_probs=80.6

Q ss_pred             chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036356          358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWK  434 (462)
Q Consensus       358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~  434 (462)
                      .|..+...+.+.|++++|...|++..+  ..|+ ...|..+..++.+.|++++|+..+++. .+.| +...|..+..++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            466778889999999999999999998  5675 788999999999999999999999998 4445 5778999999999


Q ss_pred             ccCChHHHHHHHHhhhhc
Q 036356          435 IPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       435 ~~~~~~~a~~~~~~~~~~  452 (462)
                      ..|++++|+..+.+.+..
T Consensus        84 ~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           84 AVKEYASALETLDAARTK  101 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHh
Confidence            999999999888876543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.83  E-value=0.0011  Score=62.29  Aligned_cols=205  Identities=10%  Similarity=0.010  Sum_probs=112.9

Q ss_pred             HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCc---------------hHHHHHHHHHHhcCCcccHHHHhhccCCC--
Q 036356          141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV---------------IVNTVLIDMYAKCGSVDLAPMFFDRTLDK--  203 (462)
Q Consensus       141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--  203 (462)
                      ...+.+.|++++|++.|.+..    ....-..+.               ..+..+...|.+.|++++|.+.+.+..+.  
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLL----DKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHH----HSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH----hhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            345788899999999999872    111111111               13667888999999999999888765421  


Q ss_pred             C-cchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCC
Q 036356          204 D-VVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ  282 (462)
Q Consensus       204 ~-~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  282 (462)
                      . ......                       ..+.+.+-..+...|+.+.+..++...........           ...
T Consensus        87 ~~~~~~~~-----------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~  132 (434)
T 4b4t_Q           87 QFAKSKTV-----------------------KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK-----------RVF  132 (434)
T ss_dssp             TSCHHHHH-----------------------HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS-----------CCS
T ss_pred             HccchHHH-----------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC-----------ccH
Confidence            0 000000                       00112222334455666666666665543211000           001


Q ss_pred             CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC-----CC-
Q 036356          283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KD-  355 (462)
Q Consensus       283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-  355 (462)
                      .-..++..+...|...|++++|..++.+.+.. ....+-.+ ...++..++..|...|++++|..++++...     ++ 
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  211 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLRE-FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP  211 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence            12345666667777777777777777664322 11222222 244666667777777777777777665431     11 


Q ss_pred             ----ccchHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356          356 ----VVMRSAMTVGYGLHGLGEEGWVLFHHIRK  384 (462)
Q Consensus       356 ----~~~~~~li~~~~~~~~~~~a~~~~~~m~~  384 (462)
                          ...+..+...+...+++++|...|.+..+
T Consensus       212 ~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          212 TQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                12344555556666777777666655543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.80  E-value=0.0001  Score=57.50  Aligned_cols=59  Identities=8%  Similarity=-0.099  Sum_probs=32.1

Q ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      ..|..+...|...|++++|...+++..+  ..|+ ...+..+..++...|++++|.+.+++.
T Consensus        66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  125 (148)
T 2dba_A           66 VLHRNRAACHLKLEDYDKAETEASKAIE--KDGGDVKALYRRSQALEKLGRLDQAVLDLQRC  125 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHh--hCccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3344455555555555555555555555  3342 445555555556666666666655554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.79  E-value=8.2e-05  Score=56.56  Aligned_cols=111  Identities=16%  Similarity=0.083  Sum_probs=89.2

Q ss_pred             hhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC----HhHHH
Q 036356          325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG--IEPR----HQHYA  395 (462)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~----~~~~~  395 (462)
                      ...+..+...+...|++++|...|++..+   .+...+..+...|...|++++|...+++..+..  ..++    ..+|.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            45677788899999999999999998763   456678889999999999999999999988842  1222    67888


Q ss_pred             HHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHc
Q 036356          396 RVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKI  435 (462)
Q Consensus       396 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~  435 (462)
                      .+...+...|++++|.+.+++. ...|+...+..+......
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  124 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI  124 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            8999999999999999999998 555677666666555443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.78  E-value=4.3e-05  Score=60.62  Aligned_cols=127  Identities=11%  Similarity=-0.043  Sum_probs=99.1

Q ss_pred             hhHHHHHHHHHHhcCCcchHHHHhccCCC-----CC----ccchHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-
Q 036356          325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR-  390 (462)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-  390 (462)
                      ..++..+...|...|++++|...+++..+     ++    ..++..+...+...|++++|.+.+++..+.    +-.+. 
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            45677788889999999999999987763     22    136788899999999999999999997764    11111 


Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356          391 HQHYARVVDLLARAGYSNHAFKFIMNM-------PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGID  451 (462)
Q Consensus       391 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  451 (462)
                      ...+..+...+...|++++|.+.+++.       +..+ ....+..+...+...|+.++|...+.+.+.
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            457788888999999999999998876       1111 244678889999999999999988877654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.77  E-value=0.00023  Score=54.77  Aligned_cols=97  Identities=7%  Similarity=-0.141  Sum_probs=83.3

Q ss_pred             CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036356          354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALL  430 (462)
Q Consensus       354 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~  430 (462)
                      .+...|..+...+...|++++|...|++...  ..|+ ...|..+...+...|++++|...+++. ...| +...|..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            3556788889999999999999999999988  5565 778999999999999999999999998 3334 577899999


Q ss_pred             HHHHccCChHHHHHHHHhhhhc
Q 036356          431 SAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       431 ~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      ..+...|++++|+..+.+.+..
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999999888876543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.77  E-value=0.00022  Score=55.50  Aligned_cols=104  Identities=5%  Similarity=-0.122  Sum_probs=82.6

Q ss_pred             HhccCCCC---CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036356          347 FFDRTLDK---DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL  421 (462)
Q Consensus       347 ~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p  421 (462)
                      .|++..+.   +...+..+...+.+.|++++|...|++...  ..|+ ...|..+..+|.+.|++++|+..+++. .+.|
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            44444432   334566677889999999999999999998  6675 778889999999999999999999998 3334


Q ss_pred             -CHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          422 -RLSVRRALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       422 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                       +...|..+..++...|++++|+..+.+.+..
T Consensus        84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           84 NEPRFPFHAAECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             5677889999999999999999888776543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.75  E-value=4.7e-05  Score=57.62  Aligned_cols=90  Identities=10%  Similarity=-0.010  Sum_probs=49.5

Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHc
Q 036356          359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKI  435 (462)
Q Consensus       359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~  435 (462)
                      +..+...+.+.|++++|...|++..+  ..|+ ...|..+..++...|++++|+..+++. .+.| +...|..+..++..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            33444555556666666666666555  4443 455555555566666666666666555 3333 34455555556666


Q ss_pred             cCChHHHHHHHHhhh
Q 036356          436 PMQQWENMLQTIRGI  450 (462)
Q Consensus       436 ~~~~~~a~~~~~~~~  450 (462)
                      .|++++|+..+.+.+
T Consensus        98 ~g~~~~A~~~~~~al  112 (121)
T 1hxi_A           98 EHNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            666666665554443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.75  E-value=0.00032  Score=54.63  Aligned_cols=101  Identities=12%  Similarity=0.069  Sum_probs=84.9

Q ss_pred             CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc----hhHHHHHHHHHHhcCCcchHHHHhccCCC--C-C
Q 036356          283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN----VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-D  355 (462)
Q Consensus       283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~  355 (462)
                      .+...+..+...+.+.|++++|...|.+.+       ...|+    ...+..+...|...|++++|...+++..+  | +
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-------~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   98 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQAL-------GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD   98 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-------TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-------HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence            467788888999999999999999999842       34455    67888888999999999999999988763  3 5


Q ss_pred             ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 036356          356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQ  392 (462)
Q Consensus       356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  392 (462)
                      ...|..+..+|...|++++|...|++..+  ..|+..
T Consensus        99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~  133 (148)
T 2dba_A           99 VKALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNK  133 (148)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcH
Confidence            66788889999999999999999999998  667643

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.74  E-value=0.00025  Score=56.72  Aligned_cols=95  Identities=9%  Similarity=-0.116  Sum_probs=82.4

Q ss_pred             ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036356          356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSA  432 (462)
Q Consensus       356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~  432 (462)
                      ...|..+...+...|++++|++.|++..+  +.|+ ...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            44677888899999999999999999998  6674 788999999999999999999999998 4445 57789999999


Q ss_pred             HHccCChHHHHHHHHhhhhc
Q 036356          433 WKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       433 ~~~~~~~~~a~~~~~~~~~~  452 (462)
                      |...|++++|+..+.+.+..
T Consensus        89 ~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHh
Confidence            99999999999888876543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.74  E-value=0.00019  Score=54.13  Aligned_cols=94  Identities=10%  Similarity=-0.000  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHH
Q 036356          327 VNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLA  402 (462)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~  402 (462)
                      .+..+...+.+.|++++|...|++..+  | +...|..+..++...|++++|+..|++..+  +.|+ ...+..+..++.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence            455567788899999999999998873  4 667888899999999999999999999998  7786 678889999999


Q ss_pred             hcCChHHHHHHHHhC-CCCCC
Q 036356          403 RAGYSNHAFKFIMNM-PIELR  422 (462)
Q Consensus       403 ~~g~~~~A~~~~~~m-~~~p~  422 (462)
                      ..|++++|...+++. ...|+
T Consensus        97 ~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC----
T ss_pred             HcCCHHHHHHHHHHHHHhCcC
Confidence            999999999999987 55554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.72  E-value=0.00022  Score=52.84  Aligned_cols=94  Identities=12%  Similarity=-0.004  Sum_probs=80.2

Q ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036356          357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAW  433 (462)
Q Consensus       357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~  433 (462)
                      ..+..+...+...|++++|...+++...  ..| +...+..+...+...|++++|...+++. ...| +...+..+...+
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            4567788889999999999999999988  456 4778888999999999999999999988 3334 577899999999


Q ss_pred             HccCChHHHHHHHHhhhhc
Q 036356          434 KIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       434 ~~~~~~~~a~~~~~~~~~~  452 (462)
                      ...|++++|...+.+.+..
T Consensus        83 ~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHHHHHc
Confidence            9999999999888776653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.70  E-value=0.00012  Score=69.57  Aligned_cols=122  Identities=16%  Similarity=0.036  Sum_probs=62.6

Q ss_pred             CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-------------hhHHHHHHHHHHhcCCcchHHHHhcc
Q 036356          284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-------------VIVNTVLIDMYAKCGSVDLAPMFFDR  350 (462)
Q Consensus       284 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~  350 (462)
                      ....|..+...|.+.|++++|...|.+.+..    ....++             ...|..+..+|.+.|++++|...+++
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  342 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW----LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK  342 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4556777777777777777777777775431    111110             24444455555555555555555554


Q ss_pred             CCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHH
Q 036356          351 TLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAF  411 (462)
Q Consensus       351 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~  411 (462)
                      ..+   .+...|..+..+|...|++++|...|++..+  +.|+ ...+..+..++.+.|+.++|.
T Consensus       343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            431   2334444555555555555555555555554  4443 334444445555555554443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.69  E-value=0.00028  Score=53.62  Aligned_cols=92  Identities=13%  Similarity=-0.057  Sum_probs=64.7

Q ss_pred             HHHHHHHhcCCcchHHHHhccCCC--CCcc----chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HhHHHHHHH
Q 036356          330 VLIDMYAKCGSVDLAPMFFDRTLD--KDVV----MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR----HQHYARVVD  399 (462)
Q Consensus       330 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~  399 (462)
                      .+...+.+.|++++|...|+...+  |+..    .+..+..++...|++++|...+++..+  ..|+    ...+..+..
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS--RYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HCCCCcccHHHHHHHHH
Confidence            345567778888888888877652  4333    566677778888888888888888777  3444    455677777


Q ss_pred             HHHhcCChHHHHHHHHhC-CCCCCH
Q 036356          400 LLARAGYSNHAFKFIMNM-PIELRL  423 (462)
Q Consensus       400 ~~~~~g~~~~A~~~~~~m-~~~p~~  423 (462)
                      ++...|++++|...+++. ...|+.
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            788888888888888877 333443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.65  E-value=0.0055  Score=55.16  Aligned_cols=205  Identities=7%  Similarity=-0.053  Sum_probs=142.9

Q ss_pred             hHHHHHHHhhhc--CCc-chHHHHHHhhcCcc-chhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 036356          220 WSAFGSFDGLLS--NEE-NEYGTALDCSCDLE-FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY  295 (462)
Q Consensus       220 ~~a~~~~~~m~~--~~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~  295 (462)
                      ++|+++++++..  |+. ..|+.--.++...+ .+++++.+++.+.+...                 .+...|+.---.+
T Consensus        71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-----------------Kny~aW~hR~wlL  133 (349)
T 3q7a_A           71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-----------------KSYQVWHHRLLLL  133 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-----------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-----------------CcHHHHHHHHHHH
Confidence            788888888888  544 34555555555566 59999999999998652                 4677788776666


Q ss_pred             HcC-C-ChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcc--------hHHHHhccCCC---CCccchHHH
Q 036356          296 AKN-G-YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD--------LAPMFFDRTLD---KDVVMRSAM  362 (462)
Q Consensus       296 ~~~-~-~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~---~~~~~~~~l  362 (462)
                      .+. + +++++++++.+++     .. -.-|-..|+--..++.+.|.++        ++.+.++++.+   .|...|+..
T Consensus       134 ~~l~~~~~~~EL~~~~k~L-----~~-dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R  207 (349)
T 3q7a_A          134 DRISPQDPVSEIEYIHGSL-----LP-DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWR  207 (349)
T ss_dssp             HHHCCSCCHHHHHHHHHHT-----SS-CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHhcCCChHHHHHHHHHHH-----Hh-CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            665 6 8899999998843     22 2235667776666666666666        78888887764   466677777


Q ss_pred             HHHHHhcCC-------hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCh--------------------HHHHHHH
Q 036356          363 TVGYGLHGL-------GEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYS--------------------NHAFKFI  414 (462)
Q Consensus       363 i~~~~~~~~-------~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~--------------------~~A~~~~  414 (462)
                      ...+.+.++       ++++++.+++...  ..|+ ...|+-+-..+.+.|+.                    .+..+..
T Consensus       208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (349)
T 3q7a_A          208 WYLRVSRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFG  285 (349)
T ss_dssp             HHHHTTSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHH
Confidence            777777765       6888999998888  6776 66777766677776654                    3444444


Q ss_pred             HhC-CC-------CCCHHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356          415 MNM-PI-------ELRLSVRRALLSAWKIPMQQWENMLQTIRG  449 (462)
Q Consensus       415 ~~m-~~-------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  449 (462)
                      .++ +.       .+....+..|+..|...|+.++|+..+...
T Consensus       286 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l  328 (349)
T 3q7a_A          286 FPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL  328 (349)
T ss_dssp             CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            454 22       367788899999999999999998766654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.64  E-value=0.00025  Score=53.88  Aligned_cols=96  Identities=16%  Similarity=0.072  Sum_probs=64.4

Q ss_pred             HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCch---hHHHHHHHHHHhcCCcchHHHHhccCCC--CC----ccc
Q 036356          288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV---IVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD----VVM  358 (462)
Q Consensus       288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~  358 (462)
                      +..+...+.+.|++++|...|.+.+     ..... +.   ..+..+..+|.+.|++++|...|+...+  |+    ...
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~-----~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   78 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFL-----ELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGG   78 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-----HHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH-----HHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHH
Confidence            4455667778888888888888743     22211 12   4666677777888888888888877652  33    334


Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036356          359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH  391 (462)
Q Consensus       359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  391 (462)
                      +..+..++...|++++|...|++..+  ..|+.
T Consensus        79 ~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~  109 (129)
T 2xev_A           79 LLKLGLSQYGEGKNTEAQQTLQQVAT--QYPGS  109 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCC
Confidence            66677777788888888888888777  44653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.61  E-value=8.1e-05  Score=71.21  Aligned_cols=114  Identities=11%  Similarity=-0.066  Sum_probs=90.4

Q ss_pred             hccCCChhhHHHHHHhh--c-CCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL--L-SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +.+.|++++|++.|++.  . +.+..+|..+..++.+.|++++|...+++..+...                 .+...|.
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----------------~~~~~~~   78 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-----------------KYIKGYY   78 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-----------------TCHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----------------CCHHHHH
Confidence            78899999999999999  4 44578899999999999999999999999998765                 5678899


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHH--HHhcCCcccHHHHhh
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM--YAKCGSVDLAPMFFD  198 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~  198 (462)
                      .+..+|.+.|++++|++.|++.     .+.. +.+...+..+..+  +.+.|++++|++.++
T Consensus        79 ~lg~~~~~~g~~~eA~~~~~~a-----l~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           79 RRAASNMALGKFRAALRDYETV-----VKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHH-----HHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH-----HHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999996     3322 2234455555555  888899999999998

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.60  E-value=0.00013  Score=54.64  Aligned_cols=78  Identities=9%  Similarity=0.079  Sum_probs=49.4

Q ss_pred             cCCcchHHHHhccCCCC------CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHH
Q 036356          338 CGSVDLAPMFFDRTLDK------DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHA  410 (462)
Q Consensus       338 ~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A  410 (462)
                      .|++++|...|++..+.      +...|..+...|...|++++|...|++..+  ..|+ ...+..+..++...|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK--QFPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHcCCHHHH
Confidence            45666666666654432      234556666777777777777777777776  4554 56666777777777777777


Q ss_pred             HHHHHhC
Q 036356          411 FKFIMNM  417 (462)
Q Consensus       411 ~~~~~~m  417 (462)
                      +..+++.
T Consensus        81 ~~~~~~a   87 (117)
T 3k9i_A           81 VELLLKI   87 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777765

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.60  E-value=5.4e-05  Score=56.81  Aligned_cols=80  Identities=16%  Similarity=-0.039  Sum_probs=59.5

Q ss_pred             cCCChhhHHHHHHhh--c---CC-CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeH
Q 036356           64 WSRTEWSAFGSFDGL--L---SN-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR  137 (462)
Q Consensus        64 ~~~~~~~A~~~~~~m--~---~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~  137 (462)
                      ..|++++|+..|++.  .   .| +..++..+..++.+.|++++|...|++..+..+                 -+...+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~   64 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-----------------NHQALR   64 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CchHHH
Confidence            457888888888888  3   23 345777888888888888888888888888765                 456777


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHh
Q 036356          138 NAMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus       138 ~~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      ..+..++.+.|++++|+..|++.
T Consensus        65 ~~l~~~~~~~g~~~~A~~~~~~a   87 (117)
T 3k9i_A           65 VFYAMVLYNLGRYEQGVELLLKI   87 (117)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Confidence            78888888888888888888885

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.58  E-value=0.00057  Score=65.09  Aligned_cols=123  Identities=11%  Similarity=0.048  Sum_probs=71.8

Q ss_pred             HHHHcCCChhHHHHHhhHHHHHHHHhhCCCC----chhHHHHHHHHHHhcCCcchHHHHhccCCC-------CC----cc
Q 036356          293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------KD----VV  357 (462)
Q Consensus       293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~----~~  357 (462)
                      ..+...|++++|+.++++.+.  +...-+.|    ...+++.|..+|...|++++|..++++..+       ++    ..
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~--~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  394 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLE--KQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM  394 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHH--HHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHH--HHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            346678999999999888765  22332333    245677777888888888888777765431       11    22


Q ss_pred             chHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC----HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          358 MRSAMTVGYGLHGLGEEGWVLFHHIRKH---GIEPR----HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +++.|...|...|++++|+.++++..+-   -+-|+    ..+.+.+-.++...|++++|+.++..+
T Consensus       395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666666666554432   11222    233344444555555555555555554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.58  E-value=0.00036  Score=66.40  Aligned_cols=144  Identities=8%  Similarity=-0.077  Sum_probs=114.0

Q ss_pred             cCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--CC----------------ccc
Q 036356          297 KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD----------------VVM  358 (462)
Q Consensus       297 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~  358 (462)
                      ..+++++|...|...+..      ..-....|..+...|.+.|++++|...|++..+  |+                ...
T Consensus       246 ~l~~~~~A~~~~~~~~~~------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~  319 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKE------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA  319 (457)
T ss_dssp             EEEEEECCCCGGGSCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHH------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHH
Confidence            455667777766553221      012477888899999999999999999998763  33                468


Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHc
Q 036356          359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKI  435 (462)
Q Consensus       359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~  435 (462)
                      |..+..+|.+.|++++|+..+++..+  +.|+ ...|..+..+|...|++++|+..|++. .+.| +...+..+...+..
T Consensus       320 ~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  397 (457)
T 1kt0_A          320 FLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK  397 (457)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            88999999999999999999999998  6675 788999999999999999999999998 6666 45578888888888


Q ss_pred             cCChHHHHHHHHh
Q 036356          436 PMQQWENMLQTIR  448 (462)
Q Consensus       436 ~~~~~~a~~~~~~  448 (462)
                      .++.+++...+.+
T Consensus       398 ~~~~~~a~~~~~~  410 (457)
T 1kt0_A          398 AKEHNERDRRIYA  410 (457)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8988887755443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.00023  Score=52.35  Aligned_cols=97  Identities=11%  Similarity=0.018  Sum_probs=79.4

Q ss_pred             CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356           82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM  161 (462)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  161 (462)
                      +...+..+...+.+.|++++|...|++..+..+                 .+...|..+..++.+.|++++|++.|++. 
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-   64 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-----------------QNPVGYSNKAMALIKLGEYTQAIQMCQQG-   64 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHH-
Confidence            445677888899999999999999999998865                 57788889999999999999999999996 


Q ss_pred             hhhhhhcCCCCC-------chHHHHHHHHHHhcCCcccHHHHhhccCC
Q 036356          162 DYYIGKSEYRNN-------VIVNTVLIDMYAKCGSVDLAPMFFDRTLD  202 (462)
Q Consensus       162 ~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~  202 (462)
                          ..  ..|+       ...+..+..++...|+.+.|...++++..
T Consensus        65 ----l~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  106 (111)
T 2l6j_A           65 ----LR--YTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPE  106 (111)
T ss_dssp             ----HT--SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCSS
T ss_pred             ----HH--hCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhHH
Confidence                22  3343       45667777888888999999888887653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.50  E-value=0.00018  Score=57.45  Aligned_cols=119  Identities=11%  Similarity=-0.103  Sum_probs=76.0

Q ss_pred             CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh-CCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHH
Q 036356          284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS-EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM  362 (462)
Q Consensus       284 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l  362 (462)
                      ....+......+.+.|++++|...|.+.+...-... .-.|+...+                    ..+...+...|..+
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~nl   69 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VELDRKNIPLYANM   69 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHHHHHHHHHHHHH
Confidence            355677777788888888888888888543110000 001111100                    00111233466777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036356          363 TVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS  424 (462)
Q Consensus       363 i~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~  424 (462)
                      ..+|.+.|++++|+..+++..+  +.|+ ...|..+..+|...|++++|...+++. .+.|+..
T Consensus        70 a~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           70 SQCYLNIGDLHEAEETSSEVLK--REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            7888888888888888888887  5565 677888888888888888888888876 5556543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.44  E-value=0.00032  Score=55.07  Aligned_cols=58  Identities=7%  Similarity=-0.064  Sum_probs=48.8

Q ss_pred             chHHHHHHHHhcCChHHHHHHHHHHHHCCC-------CCC-HhHH----HHHHHHHHhcCChHHHHHHHHhC
Q 036356          358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGI-------EPR-HQHY----ARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .|+.+..++.+.|++++|+..+++..+  +       .|+ ...|    .....++...|++++|+..|++.
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALH--YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence            777888888888888888888888887  5       787 5677    88888999999999999988886

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.41  E-value=0.00017  Score=68.96  Aligned_cols=117  Identities=13%  Similarity=0.052  Sum_probs=64.7

Q ss_pred             HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHH
Q 036356          292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYG  367 (462)
Q Consensus       292 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~  367 (462)
                      ...+.+.|++++|.+.|++.+.     .  .| +...|..+..+|.+.|++++|...+++..+   .+...|..+..+|.
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~-----~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIE-----L--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHH-----H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHH-----h--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3346667777777777777432     1  22 355666666666666666666666665542   23445566666666


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHH--HHhcCChHHHHHHHHhC
Q 036356          368 LHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDL--LARAGYSNHAFKFIMNM  417 (462)
Q Consensus       368 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~~m  417 (462)
                      ..|++++|.+.+++..+  +.|+ ...+..+..+  +.+.|++++|++.+++.
T Consensus        86 ~~g~~~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~  136 (477)
T 1wao_1           86 ALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  136 (477)
T ss_dssp             HHTCHHHHHHHHHHHHH--HSTTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred             HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            66666666666666665  3343 2333333333  55566666666666543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.41  E-value=0.00038  Score=64.09  Aligned_cols=136  Identities=10%  Similarity=-0.026  Sum_probs=85.4

Q ss_pred             HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHH
Q 036356          285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV  364 (462)
Q Consensus       285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~  364 (462)
                      ...|..+...+.+.|++++|+..|.+.+...  ...  |             .....+.+    ......+..+|..+..
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~--~-------------~~~~~~~~----~~~~~~~~~~~~nla~  281 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS--R-------------AAAEDADG----AKLQPVALSCVLNIGA  281 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH--H-------------HHSCHHHH----GGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC--c-------------cccChHHH----HHHHHHHHHHHHHHHH
Confidence            4556667777777777777777777754310  000  0             00000000    0011123456777778


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHH
Q 036356          365 GYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWE  441 (462)
Q Consensus       365 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~  441 (462)
                      +|.+.|++++|++.+++..+  +.|+ ...|..+..+|...|++++|++.+++. .+.| +...+..+...+...++.++
T Consensus       282 ~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~  359 (370)
T 1ihg_A          282 CKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD  359 (370)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888887  5565 677788888888888888888888877 4444 45566666666666666655


Q ss_pred             HH
Q 036356          442 NM  443 (462)
Q Consensus       442 a~  443 (462)
                      +.
T Consensus       360 a~  361 (370)
T 1ihg_A          360 KE  361 (370)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.37  E-value=0.00057  Score=62.88  Aligned_cols=87  Identities=9%  Similarity=-0.036  Sum_probs=72.8

Q ss_pred             chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 036356          324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVD  399 (462)
Q Consensus       324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~  399 (462)
                      +...|..+..+|.+.|++++|...+++..+   .+...|..+..+|...|++++|.+.|++..+  +.|+ ...+..+..
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~  349 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            457888889999999999999999998764   3566788899999999999999999999998  6675 667777777


Q ss_pred             HHHhcCChHHHHH
Q 036356          400 LLARAGYSNHAFK  412 (462)
Q Consensus       400 ~~~~~g~~~~A~~  412 (462)
                      .+...++.+++.+
T Consensus       350 ~~~~~~~~~~a~k  362 (370)
T 1ihg_A          350 VKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888877765

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.36  E-value=0.00019  Score=65.34  Aligned_cols=145  Identities=10%  Similarity=-0.057  Sum_probs=81.3

Q ss_pred             HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHH
Q 036356          285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV  364 (462)
Q Consensus       285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~  364 (462)
                      ...+..+...+.+.|++++|...|.+.+.       ..|+...       +...|+.+++...+.      ..+|..+..
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~-------~~p~~~~-------~~~~~~~~~~~~~l~------~~~~~nla~  238 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA-------YMGDDFM-------FQLYGKYQDMALAVK------NPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHH-------HSCHHHH-------HTCCHHHHHHHHHHH------THHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------Hhccchh-------hhhcccHHHHHHHHH------HHHHHHHHH
Confidence            34466677788899999999999988532       2233221       122233333333221      236788888


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHH-ccCChH
Q 036356          365 GYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS-VRRALLSAWK-IPMQQW  440 (462)
Q Consensus       365 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~-~~~~~~  440 (462)
                      +|.+.|++++|+..+++..+  +.|+ ...|..+..+|...|++++|...|++. .+.|+.. .+..+..... ..+..+
T Consensus       239 ~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888  5665 778899999999999999999999998 5666433 4444444422 334445


Q ss_pred             HHHHHHHhhhh
Q 036356          441 ENMLQTIRGID  451 (462)
Q Consensus       441 ~a~~~~~~~~~  451 (462)
                      .+...+.+++.
T Consensus       317 ~a~~~~~~~l~  327 (338)
T 2if4_A          317 KQKEMYKGIFK  327 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHHHhhC
Confidence            55555555543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.35  E-value=0.0012  Score=51.86  Aligned_cols=90  Identities=11%  Similarity=-0.112  Sum_probs=72.8

Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------------HhHHHHHHHHHHhcCChHHHHHHHHhC-CC-----
Q 036356          359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-------------HQHYARVVDLLARAGYSNHAFKFIMNM-PI-----  419 (462)
Q Consensus       359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-----  419 (462)
                      +......+.+.|++++|+..|++..+  +.|+             ...|..+..++.+.|++++|+..+++. .+     
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            34455667778888888888888877  5554             228899999999999999999998887 55     


Q ss_pred             --CCC-HHHH----HHHHHHHHccCChHHHHHHHHhhh
Q 036356          420 --ELR-LSVR----RALLSAWKIPMQQWENMLQTIRGI  450 (462)
Q Consensus       420 --~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~  450 (462)
                        .|+ ...|    .....++...|++++|+..+.+.+
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence              785 4578    899999999999999999888764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.30  E-value=0.00087  Score=49.12  Aligned_cols=95  Identities=12%  Similarity=0.048  Sum_probs=74.6

Q ss_pred             cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356          234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD  313 (462)
Q Consensus       234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  313 (462)
                      ...+..+...+.+.|++++|...|+...+..                 +.+...|..+..++.+.|++++|...|.+.+ 
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-   65 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-----------------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL-   65 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-
Confidence            3456677788889999999999999998874                 2467888889999999999999999998843 


Q ss_pred             HHHHhhCCCCc-------hhHHHHHHHHHHhcCCcchHHHHhccCC
Q 036356          314 YYIGKSEYRNN-------VIVNTVLIDMYAKCGSVDLAPMFFDRTL  352 (462)
Q Consensus       314 ~~~~~~~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~  352 (462)
                            ...|+       ...+..+..++...|+.+.|...++++.
T Consensus        66 ------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  105 (111)
T 2l6j_A           66 ------RYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP  105 (111)
T ss_dssp             ------TSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred             ------HhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence                  33444       4556667777888888888888777664

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.29  E-value=0.0013  Score=52.27  Aligned_cols=67  Identities=10%  Similarity=-0.034  Sum_probs=56.8

Q ss_pred             chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 036356          324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQ  392 (462)
Q Consensus       324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  392 (462)
                      +...|..+..+|.+.|++++|...++...+   .+...|..+..+|...|++++|...|++..+  +.|+..
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~  131 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA  131 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence            456788888899999999999999988763   3567888899999999999999999999998  778754

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.29  E-value=0.0021  Score=61.20  Aligned_cols=132  Identities=7%  Similarity=-0.062  Sum_probs=99.0

Q ss_pred             hhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhc-CCCC-HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhC
Q 036356          243 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR-YQPN-VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE  320 (462)
Q Consensus       243 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  320 (462)
                      .+...|++++|+.+++..++.....           +| ..|+ ..+++.+..+|...|++++|+.++++.+.-.....|
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~-----------lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG  386 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPV-----------FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH  386 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTT-----------BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence            3567899999999998877642110           00 0232 467999999999999999999999998774444444


Q ss_pred             C-CCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC-------CCc----cchHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036356          321 Y-RNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------KDV----VMRSAMTVGYGLHGLGEEGWVLFHHIRKH  385 (462)
Q Consensus       321 ~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~  385 (462)
                      . .|+ ..+++.|...|...|++++|..++++..+       ||.    .+.+.+-.++...+.+++|+.++.++++.
T Consensus       387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 233 57789999999999999999999887652       332    24456777888889999999999998774

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.21  E-value=0.00068  Score=61.57  Aligned_cols=82  Identities=11%  Similarity=-0.042  Sum_probs=56.4

Q ss_pred             hccCCChhhHHHHHHhh--cCCCcc------------------hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHH
Q 036356           62 HLWSRTEWSAFGSFDGL--LSNEEN------------------EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL  121 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~~~~~------------------~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l  121 (462)
                      +.+.|++++|+..|++.  ..|+..                  .|..+..++.+.|+++.|...+++..+...       
T Consensus       189 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------  261 (338)
T 2if4_A          189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE-------  261 (338)
T ss_dssp             TCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-------
T ss_pred             HHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------
Confidence            88899999999999987  455433                  556666666666666666666666666543       


Q ss_pred             HHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356          122 ISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus       122 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  160 (462)
                                .+...|..+..+|...|++++|...|++.
T Consensus       262 ----------~~~~a~~~lg~a~~~~g~~~~A~~~l~~a  290 (338)
T 2if4_A          262 ----------KNPKALFRRGKAKAELGQMDSARDDFRKA  290 (338)
T ss_dssp             ----------TCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             ----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                      35556666666666666666666666664

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.06  E-value=0.036  Score=49.56  Aligned_cols=174  Identities=8%  Similarity=-0.040  Sum_probs=118.9

Q ss_pred             hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC--hhHHHHHhhHHHHHHHHhhCCCCchhH
Q 036356          250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY--AEEAVKLFPKWMDYYIGKSEYRNNVIV  327 (462)
Q Consensus       250 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~p~~~~  327 (462)
                      +++++.+++.+....                 +.+..+|+.-.-.+.+.++  +++++.++.+++     ... +-|-..
T Consensus        90 l~~EL~~~~~~L~~~-----------------PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l-----~~d-prNy~A  146 (331)
T 3dss_A           90 VKAELGFLESCLRVN-----------------PKSYGTWHHRCWLLSRLPEPNWARELELCARFL-----EAD-ERNFHC  146 (331)
T ss_dssp             HHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH-----HHC-TTCHHH
T ss_pred             HHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHH-----HhC-CCCHHH
Confidence            678888888888764                 2577888887777777774  789999998854     322 236677


Q ss_pred             HHHHHHHHHhcCC-cchHHHHhccCCC---CCccchHHHHHHHHhc--------------CChHHHHHHHHHHHHCCCCC
Q 036356          328 NTVLIDMYAKCGS-VDLAPMFFDRTLD---KDVVMRSAMTVGYGLH--------------GLGEEGWVLFHHIRKHGIEP  389 (462)
Q Consensus       328 ~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~m~~~g~~p  389 (462)
                      |+.-..++...|. ++++...++.+.+   .|...|+.....+.+.              +.++++++.+.....  ..|
T Consensus       147 W~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P  224 (331)
T 3dss_A          147 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDP  224 (331)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HST
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCC
Confidence            7777777778888 4888888888774   4666777655555544              457889999999888  778


Q ss_pred             C-HhHHHHHHHHHHhc-----------CChHHHHHHHHhC-CCCCCHHHHHHHHH-----HHHccCChHHHHHHHHhh
Q 036356          390 R-HQHYARVVDLLARA-----------GYSNHAFKFIMNM-PIELRLSVRRALLS-----AWKIPMQQWENMLQTIRG  449 (462)
Q Consensus       390 ~-~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~  449 (462)
                      + ...|+-+-..+.+.           +.++++++.++++ ...||. .|..+-.     +....+..++....+.+.
T Consensus       225 ~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l  301 (331)
T 3dss_A          225 NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTL  301 (331)
T ss_dssp             TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            6 56666555555544           4578888888888 666775 3443222     223456666666555544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.05  E-value=0.0012  Score=47.62  Aligned_cols=61  Identities=18%  Similarity=0.202  Sum_probs=45.7

Q ss_pred             CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +...|..+...|...|++++|...|++..+  ..|+ ...|..+..+|...|++++|.+.+++.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345566777778888888888888888777  5565 567777788888888888888877765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.02  E-value=0.0011  Score=49.19  Aligned_cols=73  Identities=11%  Similarity=0.081  Sum_probs=50.2

Q ss_pred             hHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          343 LAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       343 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .|...|++..+   .+...|..+...|...|++++|...|++..+  ..|+ ...|..+..+|...|++++|...+++.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44445544332   2445666777777778888888888887777  4454 567777777888888888888877776

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.94  E-value=0.0018  Score=47.95  Aligned_cols=74  Identities=5%  Similarity=-0.112  Sum_probs=50.1

Q ss_pred             hHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHh
Q 036356           70 SAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAK  146 (462)
Q Consensus        70 ~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~  146 (462)
                      +|++.|++.   .+.+...+..+..++...|++++|...|++..+..+                 .+...|..+..++..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~la~~~~~   65 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----------------TYSVAWKWLGKTLQG   65 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----------------CcHHHHHHHHHHHHH
Confidence            556666666   333455666777777777777777777777776654                 445566777777777


Q ss_pred             CCChhHHHHHHHHh
Q 036356          147 NGYAEEAVKLFPKW  160 (462)
Q Consensus       147 ~g~~~~a~~~~~~m  160 (462)
                      .|++++|...|++.
T Consensus        66 ~g~~~~A~~~~~~a   79 (115)
T 2kat_A           66 QGDRAGARQAWESG   79 (115)
T ss_dssp             HTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            77777777777764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.91  E-value=0.0056  Score=42.67  Aligned_cols=75  Identities=11%  Similarity=0.181  Sum_probs=42.8

Q ss_pred             chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036356          358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWK  434 (462)
Q Consensus       358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~  434 (462)
                      .|..+...+...|++++|...+++..+  ..|+ ...+..+...+.+.|++++|.+.+++. ...| +...+..+...+.
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            344555566666666666666666665  3343 455666666666667777776666665 2223 3444444444443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.85  E-value=0.0026  Score=45.86  Aligned_cols=62  Identities=5%  Similarity=-0.036  Sum_probs=47.8

Q ss_pred             CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356           82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus        82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      +...+..+..++.+.|++++|...|++..+..+                 .+...|..+..+|...|++++|.+.|++.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-----------------DYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455677777778888888888888888887765                 45667777888888888888888888775

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.61  E-value=0.0076  Score=56.36  Aligned_cols=81  Identities=9%  Similarity=-0.089  Sum_probs=48.8

Q ss_pred             cCChHHHHHHHHHHHHC---CCCCC----HhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 036356          369 HGLGEEGWVLFHHIRKH---GIEPR----HQHYARVVDLLARAGYSNHAFKFIMNM---------PIELR-LSVRRALLS  431 (462)
Q Consensus       369 ~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~l~~  431 (462)
                      .|++++|+.++++..+.   -+.|+    ..+++.|..+|...|++++|+.++++.         +..|+ ..+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            35666676666665442   22222    456666777777777777777766655         22333 335667777


Q ss_pred             HHHccCChHHHHHHHHhh
Q 036356          432 AWKIPMQQWENMLQTIRG  449 (462)
Q Consensus       432 ~~~~~~~~~~a~~~~~~~  449 (462)
                      .|..+|++++|...+.+.
T Consensus       391 ~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHH
Confidence            777777777776666554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.61  E-value=0.0058  Score=42.59  Aligned_cols=60  Identities=13%  Similarity=0.081  Sum_probs=41.0

Q ss_pred             chHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356           84 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus        84 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      ..+..+...+.+.|++++|...+++..+...                 .+...+..+...+.+.|++++|...|++.
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-----------------CCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3455566666677777777777777776644                 35556666777777777777777777774

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.57  E-value=0.012  Score=55.00  Aligned_cols=86  Identities=14%  Similarity=0.024  Sum_probs=49.2

Q ss_pred             HHHHHhcCCcchHHHHhccCCC-------CC----ccchHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HhH
Q 036356          332 IDMYAKCGSVDLAPMFFDRTLD-------KD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH------GIEPR-HQH  393 (462)
Q Consensus       332 i~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~  393 (462)
                      +..+.+.|++++|..++++..+       ++    ..+++.|..+|...|++++|+.++++...-      .-.|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            4445556666666666654331       11    235566666666666666666666655432      12222 445


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC
Q 036356          394 YARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       394 ~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      ++.|...|...|++++|+.++++.
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH
Confidence            666666666666666666666665

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.49  E-value=0.00088  Score=52.47  Aligned_cols=61  Identities=11%  Similarity=0.008  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcC-----------ChHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 036356          372 GEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAG-----------YSNHAFKFIMNM-PIELRLSVRRALLSAWK  434 (462)
Q Consensus       372 ~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g-----------~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~  434 (462)
                      +++|+..|++..+  +.|+ ...|..+..+|...|           ++++|++.|++. .+.|+...|..-+...-
T Consensus        62 ~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~  135 (158)
T 1zu2_A           62 IQEAITKFEEALL--IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  135 (158)
T ss_dssp             HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            6788888888888  7787 678888888888764           788898888887 67787776665555443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.49  E-value=0.013  Score=44.99  Aligned_cols=111  Identities=9%  Similarity=-0.077  Sum_probs=68.3

Q ss_pred             ccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchh
Q 036356          247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI  326 (462)
Q Consensus       247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~  326 (462)
                      .+++++|.+.|+...+.|.                 |+..    +-..|...+.+++|.+.|.+.     .+.|   +..
T Consensus         8 ~~d~~~A~~~~~~aa~~g~-----------------~~a~----lg~~y~~g~~~~~A~~~~~~A-----a~~g---~~~   58 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNE-----------------MFGC----LSLVSNSQINKQKLFQYLSKA-----CELN---SGN   58 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-----------------TTHH----HHHHTCTTSCHHHHHHHHHHH-----HHTT---CHH
T ss_pred             ccCHHHHHHHHHHHHcCCC-----------------Hhhh----HHHHHHcCCCHHHHHHHHHHH-----HcCC---CHH
Confidence            4567788888888877763                 3333    445566666777788888773     3332   345


Q ss_pred             HHHHHHHHHHh----cCCcchHHHHhccCCC-CCccchHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 036356          327 VNTVLIDMYAK----CGSVDLAPMFFDRTLD-KDVVMRSAMTVGYGL----HGLGEEGWVLFHHIRKHG  386 (462)
Q Consensus       327 ~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g  386 (462)
                      .+..|-..|..    .++.++|..+|++..+ -+...+..|...|..    .++.++|.++|++..+.|
T Consensus        59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            55566666665    5666666666665542 345555556666665    566666666666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.41  E-value=0.059  Score=52.45  Aligned_cols=165  Identities=10%  Similarity=0.011  Sum_probs=118.3

Q ss_pred             hHHHHHHHhhhc--CCc-chHHHHHHhhcCccc----------hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHh
Q 036356          220 WSAFGSFDGLLS--NEE-NEYGTALDCSCDLEF----------LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT  286 (462)
Q Consensus       220 ~~a~~~~~~m~~--~~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  286 (462)
                      ++|++.++++..  |+. ..|+.--.++.+.++          ++++.+.++.+.+...                 -+..
T Consensus        46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-----------------K~y~  108 (567)
T 1dce_A           46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-----------------KSYG  108 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-----------------TCHH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-----------------CCHH
Confidence            677777777777  443 344444444444455          8999999999998752                 5778


Q ss_pred             HHHHHHHHHHcCC--ChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcC-CcchHHHHhccCCCC---CccchH
Q 036356          287 LWNAMISGYAKNG--YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG-SVDLAPMFFDRTLDK---DVVMRS  360 (462)
Q Consensus       287 ~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~  360 (462)
                      +|+.---.+.+.+  +++++++.+++++.     .. .-+-..|+.-..++.+.| ..+++.+.++++.+.   |...|+
T Consensus       109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~-----~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~  182 (567)
T 1dce_A          109 TWHHRCWLLSRLPEPNWARELELCARFLE-----AD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  182 (567)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHH-----HC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHHHHHh-----hc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence            8888888888889  66999999999543     32 236778887777788888 788999999988863   555677


Q ss_pred             HHHHHHHhc--------------CChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHH
Q 036356          361 AMTVGYGLH--------------GLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNH  409 (462)
Q Consensus       361 ~li~~~~~~--------------~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~  409 (462)
                      .....+.+.              +.++++++.+++...  +.|+ ...|.-+-..+.+.++.++
T Consensus       183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCccc
Confidence            666655552              456888888888887  6676 6677777777777666444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.40  E-value=0.014  Score=54.51  Aligned_cols=52  Identities=6%  Similarity=-0.032  Sum_probs=27.9

Q ss_pred             cCCChhHHHHHhhHHHHHHHHhhCCCCc----hhHHHHHHHHHHhcCCcchHHHHhcc
Q 036356          297 KNGYAEEAVKLFPKWMDYYIGKSEYRNN----VIVNTVLIDMYAKCGSVDLAPMFFDR  350 (462)
Q Consensus       297 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~  350 (462)
                      +.|++++|+.++++.+.  +...-+.|+    ..+++.|..+|...|++++|..++++
T Consensus       310 ~~g~~~eA~~~~~~~L~--i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~  365 (433)
T 3qww_A          310 HYKSPSELLEICELSQE--KMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK  365 (433)
T ss_dssp             TTSCHHHHHHHHHHHHH--HHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHH--HhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            34667777777776554  222222222    34555556666666666665555543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=96.30  E-value=0.13  Score=45.82  Aligned_cols=180  Identities=6%  Similarity=-0.130  Sum_probs=123.1

Q ss_pred             hccCCChh-hHHHHHHhh--cCCCc-chHHHHHHhhcCccc----------hhhHHHHHHHHHHhcCCcchhHHHHHhhh
Q 036356           62 HLWSRTEW-SAFGSFDGL--LSNEE-NEYGTALDCSCDLEF----------LEQGKIVHGFMIKLGLELESDLLISLTAV  127 (462)
Q Consensus        62 ~~~~~~~~-~A~~~~~~m--~~~~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~~l~~~~~~  127 (462)
                      ..+.|.+. +|++++..+  ..|+. .+|+.--.++...+.          ++++..+++.+....+             
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-------------  105 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-------------  105 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-------------
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-------------
Confidence            34455555 799999999  55544 456655444443333          6789999999998875             


Q ss_pred             cCCCCCeeeHHHHHHHHHhCC--ChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCC-cccHHHHhhccCC--
Q 036356          128 CRYQPNVTLRNAMISGYAKNG--YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS-VDLAPMFFDRTLD--  202 (462)
Q Consensus       128 ~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~--  202 (462)
                          .+..+|+.-...+.+.|  ++++++.+++.+     ... -+-|...|+--...+...|. ++++++.++++.+  
T Consensus       106 ----Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~-----l~~-dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~  175 (331)
T 3dss_A          106 ----KSYGTWHHRCWLLSRLPEPNWARELELCARF-----LEA-DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN  175 (331)
T ss_dssp             ----TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-----HHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             ----CCHHHHHHHHHHHhccCcccHHHHHHHHHHH-----HHh-CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence                67888888777777777  489999999997     332 34467777777777778888 4888888888764  


Q ss_pred             -CCcchHHHHHHHHHhC--------------c--hHHHHHHHhhhc--C-CcchHHHHHHhhcCc-----------cchh
Q 036356          203 -KDVVMRSAMIVGYGLH--------------E--WSAFGSFDGLLS--N-EENEYGTALDCSCDL-----------EFLE  251 (462)
Q Consensus       203 -~~~~~~~~li~~~~~~--------------~--~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~-----------~~~~  251 (462)
                       .|...|+.....+...              +  +++++.+.+...  | |...|+-+-..+.+.           +.++
T Consensus       176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~  255 (331)
T 3dss_A          176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQ  255 (331)
T ss_dssp             SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHH
Confidence             4556666554443332              3  678888888777  5 445555443333333           4578


Q ss_pred             hhHHHHHHHHHhC
Q 036356          252 QGKIVHGFMIKLG  264 (462)
Q Consensus       252 ~a~~~~~~~~~~~  264 (462)
                      ++++.++++.+..
T Consensus       256 ~el~~~~elle~~  268 (331)
T 3dss_A          256 SELESCKELQELE  268 (331)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhC
Confidence            8888888888753

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.18  E-value=0.0034  Score=49.12  Aligned_cols=98  Identities=5%  Similarity=-0.111  Sum_probs=76.5

Q ss_pred             ccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccch----------hhHHHHHHHHHHhcCCcchhHHHHHhhhcC
Q 036356           63 LWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFL----------EQGKIVHGFMIKLGLELESDLLISLTAVCR  129 (462)
Q Consensus        63 ~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~  129 (462)
                      .+.+.+++|+..++..   .+.+...|..+..++.+.+++          ++|+..|++.++..+               
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP---------------   77 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP---------------   77 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT---------------
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc---------------
Confidence            4456788999999988   445677888888888888765          599999999999876               


Q ss_pred             CCCCeeeHHHHHHHHHhCC-----------ChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHH
Q 036356          130 YQPNVTLRNAMISGYAKNG-----------YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY  184 (462)
Q Consensus       130 ~~p~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~  184 (462)
                        -+...|..+..+|...|           ++++|++.|++-       ..+.|+...|...+...
T Consensus        78 --~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kA-------l~l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           78 --KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQA-------VDEQPDNTHYLKSLEMT  134 (158)
T ss_dssp             --TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-------HHHCTTCHHHHHHHHHH
T ss_pred             --CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHH-------HHhCCCCHHHHHHHHHH
Confidence              56778999999998764           899999999884       34577777776555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.18  E-value=0.037  Score=53.88  Aligned_cols=168  Identities=8%  Similarity=-0.066  Sum_probs=124.5

Q ss_pred             ccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC----------hhHHHHHhhHHHHHHH
Q 036356          247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY----------AEEAVKLFPKWMDYYI  316 (462)
Q Consensus       247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~  316 (462)
                      ....++|.+.++.+.+...                 -+...|+.--..+.+.|+          ++++++.++..+    
T Consensus        42 ~~~~eeal~~~~~~l~~nP-----------------~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l----  100 (567)
T 1dce_A           42 GELDESVLELTSQILGANP-----------------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL----  100 (567)
T ss_dssp             TCCSHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH----
T ss_pred             CCCCHHHHHHHHHHHHHCc-----------------hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH----
Confidence            3445678999999988752                 356677776666666666          889999998853    


Q ss_pred             HhhCCCCchhHHHHHHHHHHhcC--CcchHHHHhccCCC---CCccchHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCC
Q 036356          317 GKSEYRNNVIVNTVLIDMYAKCG--SVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHG-LGEEGWVLFHHIRKHGIEPR  390 (462)
Q Consensus       317 ~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~  390 (462)
                       ... +-+..+|+.-..++.+.|  +++++...++++.+   .|..+|+.-...+.+.| .++++++.++++.+  ..|+
T Consensus       101 -~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~  176 (567)
T 1dce_A          101 -RVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFS  176 (567)
T ss_dssp             -HHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCC
T ss_pred             -HhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCC
Confidence             222 235678888788888889  66999999998874   46667877777777888 88999999999988  5565


Q ss_pred             -HhHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCCh
Q 036356          391 -HQHYARVVDLLARA--------------GYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQ  439 (462)
Q Consensus       391 -~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~  439 (462)
                       ...|+.....+.+.              +.+++|++.+++. ...| |...|..+-..+...+..
T Consensus       177 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          177 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred             CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence             77888777776663              5578898888877 4445 677888777777766653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.10  E-value=0.0078  Score=46.35  Aligned_cols=106  Identities=6%  Similarity=-0.149  Sum_probs=58.7

Q ss_pred             CChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-CCccchHHHHHHHHh----cCChH
Q 036356          299 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMTVGYGL----HGLGE  373 (462)
Q Consensus       299 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~  373 (462)
                      +++++|.+.|.+     ..+.|. |+..    |-..|...+.+++|.++|++..+ -+...+..|-..|..    .++++
T Consensus         9 ~d~~~A~~~~~~-----aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~   78 (138)
T 1klx_A            9 KDLKKAIQYYVK-----ACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLR   78 (138)
T ss_dssp             HHHHHHHHHHHH-----HHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             cCHHHHHHHHHH-----HHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHH
Confidence            356667777766     334442 2222    44455555556666666665442 345555555556655    56666


Q ss_pred             HHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHhC
Q 036356          374 EGWVLFHHIRKHGIEPRHQHYARVVDLLAR----AGYSNHAFKFIMNM  417 (462)
Q Consensus       374 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m  417 (462)
                      +|.++|++..+.|   +...+..|...|..    .+++++|.+++++.
T Consensus        79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  123 (138)
T 1klx_A           79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  123 (138)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence            6666666666543   34455555555555    56666666666554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.01  E-value=0.039  Score=51.63  Aligned_cols=92  Identities=11%  Similarity=0.028  Sum_probs=71.2

Q ss_pred             HHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC----chhHHHHHHHHHHhcCCcchHHHHhccCCC-------CC----
Q 036356          291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------KD----  355 (462)
Q Consensus       291 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~----  355 (462)
                      .+..+.+.|++++|+.++++.+.  ....-+.|    ...+++.+..+|...|++++|..++++..+       ++    
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~--~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~  370 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIIS--SNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR  370 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHT--CSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHH--hccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence            35567788999999999988543  11222333    256889999999999999999999987652       22    


Q ss_pred             ccchHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356          356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRK  384 (462)
Q Consensus       356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~  384 (462)
                      ..+++.|...|...|++++|+.++++..+
T Consensus       371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            34788999999999999999999988665

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.92  E-value=0.34  Score=45.13  Aligned_cols=195  Identities=11%  Similarity=0.009  Sum_probs=98.7

Q ss_pred             eehhh---hccCCChhhHHHHHHhhcCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH-HHHHhhhcC---
Q 036356           57 FLDLY---HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-LISLTAVCR---  129 (462)
Q Consensus        57 ~~~~~---~~~~~~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-l~~~~~~~~---  129 (462)
                      .|..+   ....++..+|++.|-+.  .|+..|..+|.++.+.|.++.-...+...++..-+..-|+ |+-+|+|.+   
T Consensus        56 VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~  133 (624)
T 3lvg_A           56 VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA  133 (624)
T ss_dssp             CSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSS
T ss_pred             HHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHH
Confidence            44444   44445555555443322  3444555666666666666665555554443322112222 566666655   


Q ss_pred             ------CCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh---------------hhhhhhcCCCCCchHHHHHHHHHHhcC
Q 036356          130 ------YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM---------------DYYIGKSEYRNNVIVNTVLIDMYAKCG  188 (462)
Q Consensus       130 ------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~---------------~~~~~~~~~~~~~~~~~~li~~~~~~g  188 (462)
                            ..||..-...+.+-|...|.++.|.-+|..+.               ...+....-..++.||-.+-.+|...+
T Consensus       134 elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~  213 (624)
T 3lvg_A          134 ELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK  213 (624)
T ss_dssp             TTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSC
T ss_pred             HHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCch
Confidence                  34566566666666666666666666655542               000111111234556666666666655


Q ss_pred             CcccH------------------------------HHHhhccC---CCCcchHHHHHHHHHhCc-hHHHHHHHhhhc---
Q 036356          189 SVDLA------------------------------PMFFDRTL---DKDVVMRSAMIVGYGLHE-WSAFGSFDGLLS---  231 (462)
Q Consensus       189 ~~~~a------------------------------~~~~~~m~---~~~~~~~~~li~~~~~~~-~~a~~~~~~m~~---  231 (462)
                      ++..|                              +.+++.-.   +...-.++-|.-.|++-. ++.++.++-.-.   
T Consensus       214 EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~PeKlmEHlklf~sriN  293 (624)
T 3lvg_A          214 EFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN  293 (624)
T ss_dssp             TTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSSSSC
T ss_pred             HHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence            55543                              33333221   234446777777788777 666655554433   


Q ss_pred             --------CCcchHHHHHHhhcCccchhhh
Q 036356          232 --------NEENEYGTALDCSCDLEFLEQG  253 (462)
Q Consensus       232 --------~~~~~~~~ll~~~~~~~~~~~a  253 (462)
                              .....|..++-.|++-.+++.|
T Consensus       294 ipKviracE~ahLW~ElvfLY~~ydE~DnA  323 (624)
T 3lvg_A          294 IPKVLRAAEQAHLWAELVFLYDKYEEYDNA  323 (624)
T ss_dssp             CTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence                    2344455555555555555444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.86  E-value=0.014  Score=41.56  Aligned_cols=54  Identities=13%  Similarity=0.052  Sum_probs=41.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCC-Hh-HHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQ-HYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      ....+...|++++|...+++..+  ..|+ .. .|..+..+|...|++++|.+.+++.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   61 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA   61 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45566778888888888888877  4565 45 7777777888888888888888876

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.81  E-value=0.00033  Score=64.52  Aligned_cols=140  Identities=10%  Similarity=-0.041  Sum_probs=101.6

Q ss_pred             chHHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCC
Q 036356          206 VMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP  283 (462)
Q Consensus       206 ~~~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  283 (462)
                      ..|+.+.++....+  .+|++.|-+.  .|...|..++.++.+.|.+++-.+.+...++..                  .
T Consensus        55 ~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~------------------k  114 (624)
T 3lvg_A           55 AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA------------------R  114 (624)
T ss_dssp             CCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC------------------C
T ss_pred             cHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh------------------c
Confidence            45667777766666  5555554433  566677888999999999999998888776653                  3


Q ss_pred             CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC----------
Q 036356          284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD----------  353 (462)
Q Consensus       284 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------  353 (462)
                      +...=+.|+-+|++.++..+-++++.            .||..-...+.+-|...|.++.|.-+|..+..          
T Consensus       115 e~~IDteLi~ayAk~~rL~elEefl~------------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~  182 (624)
T 3lvg_A          115 ESYVETELIFALAKTNRLAELEEFIN------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVH  182 (624)
T ss_dssp             STTTTHHHHHHHHTSCSSSTTTSTTS------------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSS
T ss_pred             ccccHHHHHHHHHhhCcHHHHHHHHc------------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHH
Confidence            44455678889999999887555543            36666666778888888999888888876531          


Q ss_pred             --------------CCccchHHHHHHHHhcCChHHHHH
Q 036356          354 --------------KDVVMRSAMTVGYGLHGLGEEGWV  377 (462)
Q Consensus       354 --------------~~~~~~~~li~~~~~~~~~~~a~~  377 (462)
                                    .++.||-.+-.+|...+.+..|.-
T Consensus       183 L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqi  220 (624)
T 3lvg_A          183 LGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM  220 (624)
T ss_dssp             CSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTH
T ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHH
Confidence                          477899998889988888765543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.76  E-value=0.13  Score=52.60  Aligned_cols=101  Identities=16%  Similarity=0.028  Sum_probs=66.8

Q ss_pred             HHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHH
Q 036356          295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE  374 (462)
Q Consensus       295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  374 (462)
                      ....|++++|+++.+.           -.+...|..+.+.+.+.|+++.|.+.|.++..     |..+...|...|+.+.
T Consensus       662 ~l~~~~~~~A~~~~~~-----------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~  725 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTD-----------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEG  725 (814)
T ss_dssp             HHHHTCHHHHHHHHTT-----------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHH
T ss_pred             hhhcCCHHHHHHHHHh-----------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHH
Confidence            4556778887777654           24567888888888888888888888887755     5566666666777766


Q ss_pred             HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          375 GWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       375 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      ..++-+.....|-      ++....+|.+.|++++|++++.++
T Consensus       726 ~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          726 LVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence            6666555555332      233344455566666666666665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.46  E-value=0.069  Score=48.10  Aligned_cols=139  Identities=9%  Similarity=-0.007  Sum_probs=92.3

Q ss_pred             CCCHhHHHHHHHHHHc--CC---ChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHh---cCCcc--------hH
Q 036356          282 QPNVTLWNAMISGYAK--NG---YAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAK---CGSVD--------LA  344 (462)
Q Consensus       282 ~~~~~~~~~li~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---~g~~~--------~A  344 (462)
                      +.+...|...+.+...  .+   ...+|..+|++.+.       ..|+ ...|..+..+|.-   .+.+.        .+
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~-------lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a  263 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ-------SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE  263 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence            3567778777766442  23   35789999988432       3454 3344433333321   11111        12


Q ss_pred             HHHhccCC--CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036356          345 PMFFDRTL--DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL  421 (462)
Q Consensus       345 ~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p  421 (462)
                      .+-...+.  ..+..+|..+...+...|++++|...+++....  .|+...|..+...+.-.|++++|.+.+++. .+.|
T Consensus       264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            22111221  346677888877777889999999999999994  588888888889999999999999999887 6678


Q ss_pred             CHHHHHHH
Q 036356          422 RLSVRRAL  429 (462)
Q Consensus       422 ~~~~~~~l  429 (462)
                      ...+|...
T Consensus       342 ~~~t~~~~  349 (372)
T 3ly7_A          342 GANTLYWI  349 (372)
T ss_dssp             SHHHHHHH
T ss_pred             CcChHHHH
Confidence            87776543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.43  E-value=0.73  Score=36.55  Aligned_cols=128  Identities=11%  Similarity=-0.028  Sum_probs=94.7

Q ss_pred             HHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCCh
Q 036356          293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG  372 (462)
Q Consensus       293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~  372 (462)
                      ....+.|+++.|.++.+.     +      .+...|..|.+...+.|+++-|.+.|.+..+     +..+.-.|...|+.
T Consensus        13 ~LAL~lg~l~~A~e~a~~-----l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~   76 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKK-----L------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDV   76 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHH-----H------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCH
T ss_pred             HHHHhcCCHHHHHHHHHH-----h------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCH
Confidence            345678999999999776     2      4578999999999999999999999998865     77788888889998


Q ss_pred             HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356          373 EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIR  448 (462)
Q Consensus       373 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  448 (462)
                      +...++-+....+|      -++.-...+.-.|+++++.+++.+.+.-|....+      ....|..+.|...+.+
T Consensus        77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~  140 (177)
T 3mkq_B           77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQ  140 (177)
T ss_dssp             HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHH
Confidence            87776666655544      3566667777889999999999998654432221      1224555556555444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.15  E-value=0.067  Score=37.68  Aligned_cols=58  Identities=10%  Similarity=-0.029  Sum_probs=33.4

Q ss_pred             chHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          358 MRSAMTVGYGLHGL---GEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       358 ~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .+..+..++...++   .++|..++++..+  ..|+ ......+...+.+.|++++|+..|+++
T Consensus         8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~   69 (93)
T 3bee_A            8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLL   69 (93)
T ss_dssp             HHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34444444433332   4666666666666  5555 455556666666666666666666665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.78  E-value=0.52  Score=42.47  Aligned_cols=73  Identities=11%  Similarity=0.074  Sum_probs=60.1

Q ss_pred             CCchhHHHHHHHHHHhcCCcchHHHHhccCC--CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 036356          322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYAR  396 (462)
Q Consensus       322 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  396 (462)
                      ..+..+|..+...+...|++++|...+++..  .|+...|..+...+.-.|++++|.+.+++...  +.|...+|.-
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~  348 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW  348 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence            4567788887777777899999999999887  46655666777888899999999999999998  7888877643

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.28  E-value=0.053  Score=38.32  Aligned_cols=54  Identities=11%  Similarity=-0.013  Sum_probs=38.6

Q ss_pred             HHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee-eHHHHHHHHHhCCChhHHHHHHHHh
Q 036356           90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT-LRNAMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus        90 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      ...+.+.|++++|...+++..+...                 .+.. .|..+..++...|++++|.+.|++.
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   61 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEP-----------------VGKDEAYYLMGNAYRKLGDWQKALNNYQSA   61 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCS-----------------STHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCC-----------------CcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3445566778888888888777654                 4455 6777777777888888888888775

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=93.50  E-value=0.17  Score=36.37  Aligned_cols=64  Identities=3%  Similarity=-0.136  Sum_probs=45.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCC-----C-CCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036356          360 SAMTVGYGLHGLGEEGWVLFHHIRKHG-----I-EPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRL  423 (462)
Q Consensus       360 ~~li~~~~~~~~~~~a~~~~~~m~~~g-----~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~  423 (462)
                      -.|...+.+.++++.|...|+...+.-     . .+....+..|..++.+.|++++|...+++. .+.|+.
T Consensus         9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~   79 (104)
T 2v5f_A            9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            356677777888888888887766641     1 123567788888888888888888888887 455654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.43  E-value=0.24  Score=34.73  Aligned_cols=63  Identities=8%  Similarity=-0.047  Sum_probs=45.6

Q ss_pred             CCcchHHHHHHhhcCccc---hhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHH
Q 036356           81 NEENEYGTALDCSCDLEF---LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLF  157 (462)
Q Consensus        81 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  157 (462)
                      .|...+..+..++...++   .++|..++++..+..+                 -++.....+...+.+.|++++|+..|
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-----------------~~~rA~~~lg~~~~~~g~y~~Ai~~w   66 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-----------------YNEAALSLIANDHFISFRFQEAIDTW   66 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-----------------CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            345555566665543332   6888888888888765                 56677777778888888888888888


Q ss_pred             HHh
Q 036356          158 PKW  160 (462)
Q Consensus       158 ~~m  160 (462)
                      +.+
T Consensus        67 ~~~   69 (93)
T 3bee_A           67 VLL   69 (93)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            887

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.26  E-value=0.9  Score=46.23  Aligned_cols=133  Identities=12%  Similarity=-0.020  Sum_probs=89.0

Q ss_pred             HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHH
Q 036356          288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG  367 (462)
Q Consensus       288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~  367 (462)
                      ...++..+.+.|.+++|+++.++..+                 -.......|+++.|.++.+.+.  +...|..|...+.
T Consensus       632 ~~~~~~~l~~~~~~~~a~~~~~~~~~-----------------~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al  692 (814)
T 3mkq_A          632 LTKIARFLEGQEYYEEALNISPDQDQ-----------------KFELALKVGQLTLARDLLTDES--AEMKWRALGDASL  692 (814)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHCCCHHH-----------------HHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCChHHheecCCCcch-----------------heehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHH
Confidence            36777788888999998887754110                 1234567899999999988773  5578999999999


Q ss_pred             hcCChHHHHHHHHHHHHCC-------CCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChH
Q 036356          368 LHGLGEEGWVLFHHIRKHG-------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQW  440 (462)
Q Consensus       368 ~~~~~~~a~~~~~~m~~~g-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~  440 (462)
                      +.++++.|.+.|..+..-.       ..-+..-...+.......|+++.|..++-..+.      +...++.|...++++
T Consensus       693 ~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~------~~~a~~~~~~~~~~~  766 (814)
T 3mkq_A          693 QRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGD------IQGAKDLLIKSQRFS  766 (814)
T ss_dssp             HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------HHHHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCC------HHHHHHHHHHcCChH
Confidence            9999999999999875410       011223334455555556666666666555431      344556666666666


Q ss_pred             HHHHH
Q 036356          441 ENMLQ  445 (462)
Q Consensus       441 ~a~~~  445 (462)
                      +|+..
T Consensus       767 ~A~~l  771 (814)
T 3mkq_A          767 EAAFL  771 (814)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=92.36  E-value=0.058  Score=41.71  Aligned_cols=85  Identities=8%  Similarity=-0.108  Sum_probs=65.1

Q ss_pred             CccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCC---ChhHHHHHHHHhhhhhhhhcCCC
Q 036356           95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNG---YAEEAVKLFPKWMDYYIGKSEYR  171 (462)
Q Consensus        95 ~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~  171 (462)
                      ....+..+++-|.+..+.|.                 ++..+...+..++++.+   ++++++.+|++.     .+.. .
T Consensus        10 ~~~~l~~~~~~y~~e~~~~~-----------------~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~l-----l~~~-~   66 (152)
T 1pc2_A           10 SVEDLLKFEKKFQSEKAAGS-----------------VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEEL-----LPKG-S   66 (152)
T ss_dssp             CHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH-----HHHS-C
T ss_pred             CHHHHHHHHHHHHHHHccCC-----------------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-----HhcC-C
Confidence            34456677788887777775                 78888888889999988   677999999997     4443 2


Q ss_pred             C--CchHHHHHHHHHHhcCCcccHHHHhhccCC
Q 036356          172 N--NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD  202 (462)
Q Consensus       172 ~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  202 (462)
                      |  +...+..|.-+|.+.|++++|.+.++.+.+
T Consensus        67 p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           67 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            3  234445577788999999999999998873

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=91.63  E-value=0.93  Score=33.93  Aligned_cols=144  Identities=13%  Similarity=0.103  Sum_probs=92.9

Q ss_pred             eHHHHHHH--HHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCC-Cc---chHH
Q 036356          136 LRNAMISG--YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DV---VMRS  209 (462)
Q Consensus       136 ~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~---~~~~  209 (462)
                      +...|+.+  +.-.|.+++..++..+.     ...   .+..-||-+|--....-+-+-..++++.+-+- |.   ...-
T Consensus         7 l~kkLmeAK~~ildG~v~qGveii~k~-----~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlK   78 (172)
T 1wy6_A            7 IIRKLMDAKKFLLDGYIDEGVKIVLEI-----TKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLK   78 (172)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHH-----cCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHH
Confidence            34455655  55678888888888886     221   23445565665555566666666666655421 11   1233


Q ss_pred             HHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHH
Q 036356          210 AMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN  289 (462)
Q Consensus       210 ~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  289 (462)
                      .++.+|.+.+            .+...+...+..+...|.-+.-.+++..+....                 +|+....-
T Consensus        79 rVi~C~~~~n------------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-----------------~~~~~~l~  129 (172)
T 1wy6_A           79 SVVECGVINN------------TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-----------------EVSASILV  129 (172)
T ss_dssp             HHHHHHHHTT------------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-----------------CSCHHHHH
T ss_pred             HHHHHHHHhc------------chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-----------------CCChHHHH
Confidence            4556665554            455566677777788888888888888764432                 47777778


Q ss_pred             HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC
Q 036356          290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY  321 (462)
Q Consensus       290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  321 (462)
                      .+..+|.+.|+..+|.+++.+     .-+.|+
T Consensus       130 kia~Ay~Klg~~r~a~eLl~~-----AC~kG~  156 (172)
T 1wy6_A          130 AIANALRRVGDERDATTLLIE-----ACKKGE  156 (172)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH-----HHHTTC
T ss_pred             HHHHHHHHhcchhhHHHHHHH-----HHHhhh
Confidence            888888888888888888887     445555

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=91.39  E-value=0.56  Score=36.20  Aligned_cols=66  Identities=11%  Similarity=0.007  Sum_probs=34.8

Q ss_pred             CchhHHHHHHHHHHhcC---CcchHHHHhccCCC---C--CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036356          323 NNVIVNTVLIDMYAKCG---SVDLAPMFFDRTLD---K--DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR  390 (462)
Q Consensus       323 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  390 (462)
                      ++..+...+..++.+.+   +++++..+|+...+   |  +...+-.|.-+|.+.|++++|.+.++.+.+  +.|+
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~  103 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQ  103 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTT
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence            45555555555555555   44455555555442   1  123334445555666666666666666665  5554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=91.10  E-value=0.37  Score=34.50  Aligned_cols=70  Identities=9%  Similarity=-0.081  Sum_probs=53.0

Q ss_pred             CCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356           81 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus        81 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      .+...+..+...+.+.++++.|...|+...+.-.+ .++         +..+...++..|..++.+.|+++.|+..+++.
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~-~~~---------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a   72 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDE-GEI---------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-TCC---------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhc-cCC---------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            34556778888899999999999999998875310 000         00245567889999999999999999999985

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=90.36  E-value=0.89  Score=39.32  Aligned_cols=73  Identities=18%  Similarity=0.154  Sum_probs=55.5

Q ss_pred             hHHHHhccCCC--CC---ccchHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhc-CChHH
Q 036356          343 LAPMFFDRTLD--KD---VVMRSAMTVGYGL-----HGLGEEGWVLFHHIRKHGIEPR--HQHYARVVDLLARA-GYSNH  409 (462)
Q Consensus       343 ~A~~~~~~~~~--~~---~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~-g~~~~  409 (462)
                      .|...+++..+  |+   ...|..|...|.+     .|+.++|.+.|++..+  +.|+  ..++..+.+.++.. |+.++
T Consensus       181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            45555555543  43   4478888888888     4888999999999888  7784  67778888888884 88899


Q ss_pred             HHHHHHhC
Q 036356          410 AFKFIMNM  417 (462)
Q Consensus       410 A~~~~~~m  417 (462)
                      |.+.+++.
T Consensus       259 a~~~L~kA  266 (301)
T 3u64_A          259 FDEALDRA  266 (301)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888887

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.19  E-value=0.59  Score=42.91  Aligned_cols=73  Identities=5%  Similarity=-0.071  Sum_probs=54.6

Q ss_pred             HHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhc
Q 036356           89 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS  168 (462)
Q Consensus        89 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~  168 (462)
                      ++..+...|+.+.+...+..+....+                 -+...|..+|.++.+.|+..+|++.|+........+.
T Consensus       177 ~~~~~l~~g~~~~a~~~l~~~~~~~P-----------------~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eL  239 (388)
T 2ff4_A          177 KAEAEIACGRASAVIAELEALTFEHP-----------------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL  239 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHST-----------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            34455667788888887777776654                 5777888899999999999999988888755445667


Q ss_pred             CCCCCchHHH
Q 036356          169 EYRNNVIVNT  178 (462)
Q Consensus       169 ~~~~~~~~~~  178 (462)
                      |+.|+..+-.
T Consensus       240 G~~P~~~l~~  249 (388)
T 2ff4_A          240 GIDPGPTLRA  249 (388)
T ss_dssp             SCCCCHHHHH
T ss_pred             CCCCCHHHHH
Confidence            8888776543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=89.76  E-value=1.5  Score=37.94  Aligned_cols=94  Identities=4%  Similarity=-0.079  Sum_probs=70.4

Q ss_pred             hhhHHHHHHhh--cCCC---cchHHHHHHhhcCc-----cchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeH
Q 036356           68 EWSAFGSFDGL--LSNE---ENEYGTALDCSCDL-----EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR  137 (462)
Q Consensus        68 ~~~A~~~~~~m--~~~~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~  137 (462)
                      ...|...+++.  ..|+   -..|..+...|.+.     |+.++|.+.|++.++.++                .-+..++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP----------------~~~id~~  242 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS----------------AHDPDHH  242 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC----------------TTCSHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC----------------CCCchHH
Confidence            35566666666  6666   45788888888884     899999999999999865                3357778


Q ss_pred             HHHHHHHHhC-CChhHHHHHHHHhhhhhhhhcCCC--CCchHHHHHHH
Q 036356          138 NAMISGYAKN-GYAEEAVKLFPKWMDYYIGKSEYR--NNVIVNTVLID  182 (462)
Q Consensus       138 ~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~--~~~~~~~~li~  182 (462)
                      ......+++. |+.++|.+.+++-     ......  |+....|.+-+
T Consensus       243 v~YA~~l~~~~gd~~~a~~~L~kA-----L~a~p~~~P~~~lan~~~q  285 (301)
T 3u64_A          243 ITYADALCIPLNNRAGFDEALDRA-----LAIDPESVPHNKLLVILSQ  285 (301)
T ss_dssp             HHHHHHTTTTTTCHHHHHHHHHHH-----HHCCGGGCSSCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH-----HcCCCCCCCChhHHHHHHH
Confidence            8888888884 9999999999996     565555  66655554433

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=89.68  E-value=2.5  Score=33.51  Aligned_cols=74  Identities=14%  Similarity=0.098  Sum_probs=54.3

Q ss_pred             HHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 036356          333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFK  412 (462)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  412 (462)
                      +.....|+++.|.++.+.+  .+...|..|.......|+++-|.+.|....+         +..+.-.|...|+.+...+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k   81 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK   81 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence            3455789999998887766  4567899999999999999999999988764         3455555566677666555


Q ss_pred             HHHhC
Q 036356          413 FIMNM  417 (462)
Q Consensus       413 ~~~~m  417 (462)
                      +-+..
T Consensus        82 la~iA   86 (177)
T 3mkq_B           82 MQNIA   86 (177)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.56  E-value=1.5  Score=43.69  Aligned_cols=124  Identities=13%  Similarity=0.045  Sum_probs=77.6

Q ss_pred             HHHHHHHHHcCCC-hhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCc-chHHHHhccCC-----------CC
Q 036356          288 WNAMISGYAKNGY-AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV-DLAPMFFDRTL-----------DK  354 (462)
Q Consensus       288 ~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~-----------~~  354 (462)
                      -..++..+...++ .+.|.++|++     +.......+......++..+...++- -+|.+++.+..           ..
T Consensus       251 ~~~Ll~~~~~t~~~~~~a~~~le~-----L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~  325 (754)
T 4gns_B          251 MYSLKSFIAITPSLVDFTIDYLKG-----LTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPR  325 (754)
T ss_dssp             HHHHHHHHHTCGGGHHHHHHHHHH-----HHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHcccccHHHHHHHHHHH-----HHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccc
Confidence            3445555555666 5789999988     44443322333333344443333321 13343333221           12


Q ss_pred             Cccc-----h-HHH----HHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036356          355 DVVM-----R-SAM----TVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNMP  418 (462)
Q Consensus       355 ~~~~-----~-~~l----i~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  418 (462)
                      +...     + ..|    ..-|...|+++.|+++-++...  +.|+ ..+|..|...|...|+++.|+-.++-++
T Consensus       326 ~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          326 DADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            2110     1 112    2345568999999999999988  8887 7899999999999999999999999884

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=87.88  E-value=9.7  Score=30.89  Aligned_cols=121  Identities=13%  Similarity=0.050  Sum_probs=69.5

Q ss_pred             CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHH
Q 036356          132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM  211 (462)
Q Consensus       132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~l  211 (462)
                      ++...-...+.++.+.|+.+..-.+.+.+         -.++..+-...+.++.+.|+.+....+.+.+.+++...-...
T Consensus        62 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l---------~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a  132 (211)
T 3ltm_A           62 EDAWVRRAAADALGQIGDERAVEPLIKAL---------KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAA  132 (211)
T ss_dssp             SCHHHHHHHHHHHHHHCCGGGHHHHHHHT---------TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHH
Confidence            45555555566666666543333333222         235566666677777777776655555555556666666666


Q ss_pred             HHHHHhCc-hHHHHHHHhhhc-CCcchHHHHHHhhcCccchhhhHHHHHHHHH
Q 036356          212 IVGYGLHE-WSAFGSFDGLLS-NEENEYGTALDCSCDLEFLEQGKIVHGFMIK  262 (462)
Q Consensus       212 i~~~~~~~-~~a~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  262 (462)
                      +.++...+ .++...+.++.. ++..+-...+.++.+.+. ..+...+..+.+
T Consensus       133 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~  184 (211)
T 3ltm_A          133 AFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE  184 (211)
T ss_dssp             HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence            66666666 556665555555 666666666666666554 344444444444

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=87.76  E-value=6  Score=29.69  Aligned_cols=64  Identities=17%  Similarity=0.211  Sum_probs=35.2

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHh-C-CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcCC
Q 036356          391 HQHYARVVDLLARAGYSNHAFKFIMN-M-PIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGE  454 (462)
Q Consensus       391 ~~~~~~li~~~~~~g~~~~A~~~~~~-m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  454 (462)
                      .......++.+..+|+-++-.++..+ . ..+|++...-.+..||.+.|+..+|-+.+.+.-+.|.
T Consensus        91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           91 NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            33444455555556666666666655 2 3445555556666666666666666555555554443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=87.60  E-value=2.1  Score=32.72  Aligned_cols=109  Identities=8%  Similarity=-0.068  Sum_probs=74.1

Q ss_pred             chhHHHHHHHHHHhcCCc------chHHHHhccCC---CCC-ccchHHHHHHHH------hcCChHHHHHHHHHHHHCCC
Q 036356          324 NVIVNTVLIDMYAKCGSV------DLAPMFFDRTL---DKD-VVMRSAMTVGYG------LHGLGEEGWVLFHHIRKHGI  387 (462)
Q Consensus       324 ~~~~~~~li~~~~~~g~~------~~A~~~~~~~~---~~~-~~~~~~li~~~~------~~~~~~~a~~~~~~m~~~g~  387 (462)
                      |..+|-..+....+.|+.      ++..++|++..   .|+ ...|...|..+.      ..++.++|.++|+.+.+.+-
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK   91 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK   91 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence            567787888888888888      67777777554   122 334555554332      34788899999999977533


Q ss_pred             CCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036356          388 EPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAW  433 (462)
Q Consensus       388 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~  433 (462)
                      .- ...|....+--.++|++..|.+++... |..| +.....+.++-+
T Consensus        92 kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl  138 (161)
T 4h7y_A           92 KF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL  138 (161)
T ss_dssp             TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence            33 777777777778899999999999887 4444 344555555543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=87.53  E-value=2.4  Score=38.85  Aligned_cols=75  Identities=7%  Similarity=0.008  Sum_probs=61.5

Q ss_pred             HHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHH
Q 036356          238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG  317 (462)
Q Consensus       238 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  317 (462)
                      ..++.++...|+.+++...+..+....                 +.+...|..+|.+|.+.|+..+|++.|.+.......
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-----------------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~  237 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEH-----------------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD  237 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            445667778899999999888887764                 358889999999999999999999999886665566


Q ss_pred             hhCCCCchhHHH
Q 036356          318 KSEYRNNVIVNT  329 (462)
Q Consensus       318 ~~~~~p~~~~~~  329 (462)
                      +.|+.|+..+-.
T Consensus       238 eLG~~P~~~l~~  249 (388)
T 2ff4_A          238 DLGIDPGPTLRA  249 (388)
T ss_dssp             HHSCCCCHHHHH
T ss_pred             HhCCCCCHHHHH
Confidence            789999877644

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=85.82  E-value=12  Score=32.80  Aligned_cols=132  Identities=8%  Similarity=-0.007  Sum_probs=73.2

Q ss_pred             HHHHhhhcCCCCCeeeHHHHHHHHHhCCChh-HHHHHHHHhhhhhhhhcC-CCCCchHHHHHHHHHHhcCCcccHHHHhh
Q 036356          121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAE-EAVKLFPKWMDYYIGKSE-YRNNVIVNTVLIDMYAKCGSVDLAPMFFD  198 (462)
Q Consensus       121 l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~  198 (462)
                      +++.|.+.+.+++.....-++..+.....-+ .-.++.+.+..+.....+ ..-|......+...|.+.|++.+|+.-|-
T Consensus        79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A           79 LLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            4444444444788777777777766633221 234445554333222222 23467888899999999999999999776


Q ss_pred             ccCCCCcchHHHHHHHHHhC---c-hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHH
Q 036356          199 RTLDKDVVMRSAMIVGYGLH---E-WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK  262 (462)
Q Consensus       199 ~m~~~~~~~~~~li~~~~~~---~-~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  262 (462)
                      .-...+...+..++.-+...   + ..-..+|         .-.. +--|.-.++...|..+++...+
T Consensus       159 ~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf---------~~Ra-VL~yL~l~n~~~A~~~~~~f~~  216 (312)
T 2wpv_A          159 LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF---------FSRL-VFNYLFISNISFAHESKDIFLE  216 (312)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH---------HHHH-HHHHHHTTBHHHHHHHHHHHHH
T ss_pred             hCCCccHHHHHHHHHHHHHhcCCCCcchHHHH---------HHHH-HHHHHHhcCHHHHHHHHHHHHH
Confidence            33222455555555443332   3 1111111         1111 2223356777888887776654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.83  E-value=9.2  Score=35.66  Aligned_cols=258  Identities=10%  Similarity=-0.033  Sum_probs=142.1

Q ss_pred             CChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCC---cchHHHHHHHHH----hCc-
Q 036356          148 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD---VVMRSAMIVGYG----LHE-  219 (462)
Q Consensus       148 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~----~~~-  219 (462)
                      |+++.|++.+-.+....-..............++..|...|+++...+.+..+.+..   ......++..+.    ... 
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~  109 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS  109 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence            667778777655410000112234445667778888888888888766554433221   111222222221    111 


Q ss_pred             ---hHHHHHHHhhhc-CC---------cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHh
Q 036356          220 ---WSAFGSFDGLLS-NE---------ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT  286 (462)
Q Consensus       220 ---~~a~~~~~~m~~-~~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  286 (462)
                         +.-..+.+.... -+         ......|...+-..|++.+|..++..+...-...+...           --+.
T Consensus       110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~-----------~kve  178 (445)
T 4b4t_P          110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS-----------EKIQ  178 (445)
T ss_dssp             THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH-----------HHHH
T ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH-----------HHHH
Confidence               112222222222 11         11234566778888999999999998865322211100           0134


Q ss_pred             HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc--hhHHHHHHHHHHhcCCcchHHHHhccCCC-----CCccch
Q 036356          287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KDVVMR  359 (462)
Q Consensus       287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~  359 (462)
                      .+...++.|...+++.+|..++.+.... .......|+  ...|...+..+...+++.+|.+.|.+..+     .|...+
T Consensus       179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~-~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~  257 (445)
T 4b4t_P          179 FILEQMELSILKGDYSQATVLSRKILKK-TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKW  257 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHH
Confidence            5777788999999999999998874321 112222233  35677778888889999999888776642     122222


Q ss_pred             HH----HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc--CChHHHHHHHHhC
Q 036356          360 SA----MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA--GYSNHAFKFIMNM  417 (462)
Q Consensus       360 ~~----li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m  417 (462)
                      ..    ++.+..-.+....-..++.........++...|..++.+|...  .+++.+.+.++..
T Consensus       258 ~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~  321 (445)
T 4b4t_P          258 KPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV  321 (445)
T ss_dssp             HHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence            21    1112222222222233344433333346678899999999875  4677777777654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=84.26  E-value=5.3  Score=39.87  Aligned_cols=129  Identities=8%  Similarity=-0.054  Sum_probs=79.0

Q ss_pred             HHHHHHhhcCccc-hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhH--HHHHHHHHHcCCC-hhHHHHHhhHHH
Q 036356          237 YGTALDCSCDLEF-LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL--WNAMISGYAKNGY-AEEAVKLFPKWM  312 (462)
Q Consensus       237 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~li~~~~~~~~-~~~a~~~~~~~~  312 (462)
                      ...++..+...++ ++.|..+++.+.+..                  |....  ...+|..+.+.++ --+|.+++.+.+
T Consensus       251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~------------------p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l  312 (754)
T 4gns_B          251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD------------------PIHDIYYKTAMITILDHIETKELDMITILNETL  312 (754)
T ss_dssp             HHHHHHHHHTCGGGHHHHHHHHHHHHHHC------------------GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhC------------------CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            4455566655655 588999999988864                  43322  2233333333332 234666666544


Q ss_pred             HHHHHh-hCCCCc-h----------hHHHHHHHHHHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHHHHH
Q 036356          313 DYYIGK-SEYRNN-V----------IVNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEEGWV  377 (462)
Q Consensus       313 ~~~~~~-~~~~p~-~----------~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~  377 (462)
                      ...... ....+. .          ...+.=.+.+...|+++-|..+-++..  .| +-.+|..|..+|...|+++.|+-
T Consensus       313 ~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL  392 (754)
T 4gns_B          313 DPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF  392 (754)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence            322111 111111 1          011111334567899999999998876  34 57799999999999999999999


Q ss_pred             HHHHHH
Q 036356          378 LFHHIR  383 (462)
Q Consensus       378 ~~~~m~  383 (462)
                      .++.+-
T Consensus       393 tLNScP  398 (754)
T 4gns_B          393 AINSMP  398 (754)
T ss_dssp             HHHHSC
T ss_pred             HHhcCC
Confidence            998873

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.25  E-value=36  Score=36.15  Aligned_cols=145  Identities=9%  Similarity=-0.058  Sum_probs=97.7

Q ss_pred             HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---C----------
Q 036356          288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---K----------  354 (462)
Q Consensus       288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~----------  354 (462)
                      ...++..+.+.+..+-+.++...          ..-+....-.+..+|...|++++|...|++...   .          
T Consensus       815 ~~~l~~~l~~~~~~~~~~~l~~~----------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~  884 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQLIGW----------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLRE  884 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHHHHHH----------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhh----------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcc
Confidence            34466667777777776665432          122333333456778899999999999987641   0          


Q ss_pred             -----------C--ccchHHHHHHHHhcCChHHHHHHHHHHHHCCC-C-CC--HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          355 -----------D--VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI-E-PR--HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       355 -----------~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~-p~--~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                                 +  ..=|..++..+.+.+.++.+.++-....+..- . ++  ...|..++++....|++++|...+-.+
T Consensus       885 ~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          885 FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence                       0  01256788888889999999888777666421 1 11  225788899999999999999988777


Q ss_pred             C-CCCCHHHHHHHHHHHHccCChHHH
Q 036356          418 P-IELRLSVRRALLSAWKIPMQQWEN  442 (462)
Q Consensus       418 ~-~~p~~~~~~~l~~~~~~~~~~~~a  442 (462)
                      + ..-.......|+..+|..|....-
T Consensus       965 pd~~~r~~cLr~LV~~lce~~~~~~L  990 (1139)
T 4fhn_B          965 STTPLKKSCLLDFVNQLTKQGKINQL  990 (1139)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCChhhh
Confidence            2 223455677888888888776544

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.11  E-value=44  Score=35.53  Aligned_cols=122  Identities=8%  Similarity=-0.027  Sum_probs=54.2

Q ss_pred             HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCC-Cc--hhHHHHHHHHHHhcCCcchHHHHhccCCCC--CccchHHH
Q 036356          288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR-NN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLDK--DVVMRSAM  362 (462)
Q Consensus       288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l  362 (462)
                      |..++..+-+.|.++.+.++-...+.    ..+.. ++  ...|..+++.+...|++++|...+-.+..+  -..+...|
T Consensus       902 Y~hv~~LFe~~~~~~~vi~fa~lAi~----~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~L  977 (1139)
T 4fhn_B          902 YLHLSKKLFEESAYIDALEFSLLADA----SKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDF  977 (1139)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHH----HCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH----hccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            44555555555555555555444321    11111 11  124555566666666666665555444321  12233445


Q ss_pred             HHHHHhcCCh------------HHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHhcCChHHHHHH
Q 036356          363 TVGYGLHGLG------------EEGWVLFHHIRKHG--IEPRHQHYARVVDLLARAGYSNHAFKF  413 (462)
Q Consensus       363 i~~~~~~~~~------------~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~  413 (462)
                      +..+|..|..            ++..+++..-.+..  ......-|..|-.-....|++..|-.+
T Consensus       978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~v 1042 (1139)
T 4fhn_B          978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAI 1042 (1139)
T ss_dssp             HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHH
Confidence            5544544443            34444443322211  111122344444445566666665443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=83.63  E-value=1.4  Score=32.60  Aligned_cols=83  Identities=10%  Similarity=-0.061  Sum_probs=60.7

Q ss_pred             cchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhH---HHHHHHHhhhhhhhhcCCCC-
Q 036356           97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEE---AVKLFPKWMDYYIGKSEYRN-  172 (462)
Q Consensus        97 ~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~~~~~~-  172 (462)
                      ..+..+++-|......|.                 |+..+-..+..++++..+...   ++.++++.     ...+ .| 
T Consensus        15 ~~l~~~~~~y~~e~~~~~-----------------~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l-----~~~~-~p~   71 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGS-----------------VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL-----LPKG-SKE   71 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSC-----------------CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHH-----TTTS-CHH
T ss_pred             HHHHHHHHHHHHHhccCC-----------------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-----HhcC-Ccc
Confidence            345566677776666665                 788887778889999887666   89999996     3333 22 


Q ss_pred             -CchHHHHHHHHHHhcCCcccHHHHhhccCC
Q 036356          173 -NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD  202 (462)
Q Consensus       173 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  202 (462)
                       .......|.-++.+.|++++|.+.++.+.+
T Consensus        72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence             233444577889999999999999998763

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=83.39  E-value=4.7  Score=28.33  Aligned_cols=46  Identities=13%  Similarity=0.149  Sum_probs=29.0

Q ss_pred             CCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHH
Q 036356          131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID  182 (462)
Q Consensus       131 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~  182 (462)
                      .|++.+..+.+.+|.+-+++..|+++|+-.      +....+...+|..++.
T Consensus        42 VP~P~ii~aaLrAcRRvND~alAVR~lE~i------K~K~~~~~~iY~~~lq   87 (109)
T 1v54_E           42 VPEPKIIDAALRACRRLNDFASAVRILEVV------KDKAGPHKEIYPYVIQ   87 (109)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHTTTCTTHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHhcCchhhHHHHHH
Confidence            677777777777777777777777777774      3333333445555554

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=80.72  E-value=30  Score=30.61  Aligned_cols=164  Identities=16%  Similarity=0.052  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc------hHHH---HHHHhhhc-CCcchHHHHHHhhc
Q 036356          176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE------WSAF---GSFDGLLS-NEENEYGTALDCSC  245 (462)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~------~~a~---~~~~~m~~-~~~~~~~~ll~~~~  245 (462)
                      +|.++..-|.+.+++++|++++..-.           ..+.+.+      +-+.   ++|++-.. +|......++..+.
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~GA-----------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~  105 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILASVS-----------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR  105 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHH-----------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            44456666788888888888764311           0111111      2222   22222222 56666666666665


Q ss_pred             Cccchhh-hHHHHHHH----HHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhC
Q 036356          246 DLEFLEQ-GKIVHGFM----IKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE  320 (462)
Q Consensus       246 ~~~~~~~-a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  320 (462)
                      ....-+. -..+.+.+    .+.|-.              ..-|......+...|.+.+++.+|+..|-.         |
T Consensus       106 ~~~~~~p~r~~fi~~ai~WS~~~g~~--------------~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il---------g  162 (336)
T 3lpz_A          106 LFQPGEPVRKRFVKEMIDWSKKFGDY--------------PAGDPELHHVVGTLYVEEGEFEAAEKHLVL---------G  162 (336)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHSSC--------------TTCCHHHHHHHHHHHHHTTCHHHHHHHHTT---------S
T ss_pred             hCCCCCcHHHHHHHHHHHHHhhcCCC--------------CCCCHHHHHHHHHHHHccCCHHHHHHHHHh---------c
Confidence            4443211 11222222    222211              134566667778889999999999888743         4


Q ss_pred             CCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356          321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK  384 (462)
Q Consensus       321 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  384 (462)
                      -.++...|..++.-+.+.+...++-- |          ....+--|.-.++...|..+++...+
T Consensus       163 ~~~s~~~~a~mL~ew~~~~~~~e~dl-f----------iaRaVL~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          163 TKESPEVLARMEYEWYKQDESHTAPL-Y----------CARAVLPYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             CTTHHHHHHHHHHHHHHTSCGGGHHH-H----------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhcCCccHHH-H----------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            45555677666655555444222211 1          12234445567788888877666554

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=80.62  E-value=30  Score=30.58  Aligned_cols=130  Identities=8%  Similarity=-0.023  Sum_probs=73.2

Q ss_pred             HHHHhhhcCCCCCeeeHHHHHHHHHhCCChh-HHHHHHHHhhhhhhhhcC--CCCCchHHHHHHHHHHhcCCcccHHHHh
Q 036356          121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAE-EAVKLFPKWMDYYIGKSE--YRNNVIVNTVLIDMYAKCGSVDLAPMFF  197 (462)
Q Consensus       121 l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~  197 (462)
                      +++.|.+.+.++|.....-|+..+.....-+ .-.++.+++..+... .|  ..-|......+...|.+.+++.+|+.-|
T Consensus        81 lvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A           81 LVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            4455555555888888778887777665422 234455554333333 23  3446778888999999999999999888


Q ss_pred             hccCCCCcchHHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHH
Q 036356          198 DRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK  262 (462)
Q Consensus       198 ~~m~~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  262 (462)
                      -.-.++....+..++.-+...+  .++--          +.-. .+--|.-.+++..|..+++...+
T Consensus       160 ilg~~~s~~~~a~mL~ew~~~~~~~e~dl----------fiaR-aVL~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          160 VLGTKESPEVLARMEYEWYKQDESHTAPL----------YCAR-AVLPYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             TTSCTTHHHHHHHHHHHHHHTSCGGGHHH----------HHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhcCCchHHHHHHHHHHHHHhcCCccHHH----------HHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence            4322223356655554443332  11111          1111 22233445677777776665544

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=80.50  E-value=5.3  Score=28.08  Aligned_cols=60  Identities=7%  Similarity=-0.036  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 036356          372 GEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLS  431 (462)
Q Consensus       372 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~  431 (462)
                      .=++.+-++.+....+-|+.....+.+.+|-+.+++..|.++++-.  +..+...+|..+++
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq   87 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ   87 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence            3345555666666667777777777777777777777777777666  22233334555544

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=80.23  E-value=21  Score=28.53  Aligned_cols=121  Identities=13%  Similarity=0.050  Sum_probs=68.2

Q ss_pred             CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHH
Q 036356          132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM  211 (462)
Q Consensus       132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~l  211 (462)
                      ++...-...+.++.+.|+.+..-.+.+.+         -.++..+-...+.++.+.++.+....+.+.+.+++...-...
T Consensus        57 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l---------~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a  127 (201)
T 3ltj_A           57 EDAWVRRAAADALGQIGDERAVEPLIKAL---------KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAA  127 (201)
T ss_dssp             SSHHHHHHHHHHHHHHCCGGGHHHHHHHT---------TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHH
Confidence            44444455556666666543333333322         135666666777777777776655555565656666655566


Q ss_pred             HHHHHhCc-hHHHHHHHhhhc-CCcchHHHHHHhhcCccchhhhHHHHHHHHH
Q 036356          212 IVGYGLHE-WSAFGSFDGLLS-NEENEYGTALDCSCDLEFLEQGKIVHGFMIK  262 (462)
Q Consensus       212 i~~~~~~~-~~a~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  262 (462)
                      +.++.+.+ ..+...+..+.. ++..+-...+.++.+.|. +.+...+..+.+
T Consensus       128 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~  179 (201)
T 3ltj_A          128 AFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE  179 (201)
T ss_dssp             HHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence            66666666 555555555555 665555566666665554 334444444443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=80.23  E-value=22  Score=28.72  Aligned_cols=60  Identities=13%  Similarity=0.085  Sum_probs=27.6

Q ss_pred             CchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHH
Q 036356          323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR  383 (462)
Q Consensus       323 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  383 (462)
                      ++..+-...+.++++.|+.+....+.+.+..++...-...+.++.+.+. ..+...+..+.
T Consensus       124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l  183 (211)
T 3ltm_A          124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA  183 (211)
T ss_dssp             SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence            4444444455555555554433333333334444444444555555544 33444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	462
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.84
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.82
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.38
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.31
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.03
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.79
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.77
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.75
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.71
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.66
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.55
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.54
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.48
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.43
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.42
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.41
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.37
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.26
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.02
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.02
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.02
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.01
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.94
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.94
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.88
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.87
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.81
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.76
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.65
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.59
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.56
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.34
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.34
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.34
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.32
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.29
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.17
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.07
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.02
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.98
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.97
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.91
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.75
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.63
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.54
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.49
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.36
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.33
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.23
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.1
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	95.84
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.72
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.13
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.88
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	92.21
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	89.27
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	84.03
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	82.3
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	81.06

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8.6e-19  Score=161.91  Aligned_cols=340  Identities=11%  Similarity=0.002  Sum_probs=160.5

Q ss_pred             ccCCChhhHHHHHHhh--cCC-CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHH
Q 036356           63 LWSRTEWSAFGSFDGL--LSN-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNA  139 (462)
Q Consensus        63 ~~~~~~~~A~~~~~~m--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~  139 (462)
                      .+.|++++|++.|+++  ..| +..++..+..++.+.|++++|...+++..+..+                 -+..+|..
T Consensus        10 ~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~a~~~   72 (388)
T d1w3ba_          10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-----------------LLAEAYSN   72 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CCHHHHHH
Confidence            3445666666666665  222 344555556666666666666666666665543                 34455566


Q ss_pred             HHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC---CCCcchHHHHHHHHH
Q 036356          140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMIVGYG  216 (462)
Q Consensus       140 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~  216 (462)
                      +...|.+.|++++|+..+...     ... .+.+..............+....+........   ...............
T Consensus        73 l~~~~~~~g~~~~A~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (388)
T d1w3ba_          73 LGNVYKERGQLQEAIEHYRHA-----LRL-KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK  146 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHH-----HHH-CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHhhhhccccccccccccc-----ccc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            666666666666666666654     111 12223333333333444444444433333222   111112222222222


Q ss_pred             hCc--hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHH
Q 036356          217 LHE--WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM  291 (462)
Q Consensus       217 ~~~--~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l  291 (462)
                      ..+  ..+...+.+...  |+ ...+..+...+...|+++.|...++...+..                 +.+...|..+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~l  209 (388)
T d1w3ba_         147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-----------------PNFLDAYINL  209 (388)
T ss_dssp             TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHH
T ss_pred             ccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-----------------cccHHHHHHH
Confidence            222  333333333333  22 2334444444555555555555555554432                 1233445555


Q ss_pred             HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHh
Q 036356          292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGL  368 (462)
Q Consensus       292 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~  368 (462)
                      ...+...|++++|...+.+.     ...+ ..+...+..+...+.+.|++++|...|++..+   .+..+|..+...+..
T Consensus       210 ~~~~~~~~~~~~A~~~~~~~-----~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  283 (388)
T d1w3ba_         210 GNVLKEARIFDRAVAAYLRA-----LSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE  283 (388)
T ss_dssp             HHHHHTTTCTTHHHHHHHHH-----HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH
T ss_pred             hhhhhccccHHHHHHHHHHh-----HHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            55555555555555555542     1111 12233444455555555555555555554331   223344555555555


Q ss_pred             cCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHH
Q 036356          369 HGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQ  445 (462)
Q Consensus       369 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~  445 (462)
                      .|++++|.+.++....  ..| +...+..+...+.+.|++++|++.+++. .+.| +...|..+...|...|++++|+..
T Consensus       284 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  361 (388)
T d1w3ba_         284 KGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH  361 (388)
T ss_dssp             HSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             cCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5555555555555444  222 2444555555555555555555555554 3333 233455555555555555555555


Q ss_pred             HHhhh
Q 036356          446 TIRGI  450 (462)
Q Consensus       446 ~~~~~  450 (462)
                      +.+.+
T Consensus       362 ~~~al  366 (388)
T d1w3ba_         362 YKEAI  366 (388)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9e-18  Score=154.91  Aligned_cols=335  Identities=12%  Similarity=0.067  Sum_probs=269.0

Q ss_pred             ceeehhh---hccCCChhhHHHHHHhh--cCC-CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhc
Q 036356           55 IVFLDLY---HLWSRTEWSAFGSFDGL--LSN-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC  128 (462)
Q Consensus        55 ~~~~~~~---~~~~~~~~~A~~~~~~m--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~  128 (462)
                      ...+..+   +.+.|++++|+..|++.  ..| +..+|..+..++.+.|++++|...+....+...              
T Consensus        33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------   98 (388)
T d1w3ba_          33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP--------------   98 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccc--------------
Confidence            4455555   88999999999999998  444 567899999999999999999999999998865              


Q ss_pred             CCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC--CC-Cc
Q 036356          129 RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DV  205 (462)
Q Consensus       129 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~  205 (462)
                         .+...+..........+....+.......      .....................+....+...+.+..  .| +.
T Consensus        99 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (388)
T d1w3ba_          99 ---DFIDGYINLAAALVAAGDMEGAVQAYVSA------LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA  169 (388)
T ss_dssp             ---TCHHHHHHHHHHHHHHSCSSHHHHHHHHH------HHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCH
T ss_pred             ---ccccccccccccccccccccccccccccc------cccccccccccccccccccccchhhhhHHHHHHhhccCcchh
Confidence               55555666666666677777777766663      33334445555566667777788888877776654  23 44


Q ss_pred             chHHHHHHHHHhCc--hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhc
Q 036356          206 VMRSAMIVGYGLHE--WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR  280 (462)
Q Consensus       206 ~~~~~li~~~~~~~--~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  280 (462)
                      ..+..+...+...+  ++|...+++...  |+ ...+..+...+...|++++|...+....+.+.               
T Consensus       170 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------  234 (388)
T d1w3ba_         170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP---------------  234 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT---------------
T ss_pred             HHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh---------------
Confidence            56666777777777  999999998877  54 56788888999999999999999999988753               


Q ss_pred             CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC---CCCc
Q 036356          281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDV  356 (462)
Q Consensus       281 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~  356 (462)
                        .+...+..+...+.+.|++++|...|++.+     +  ..| +...+..+...|...|++++|...++...   ..+.
T Consensus       235 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-----~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  305 (388)
T d1w3ba_         235 --NHAVVHGNLACVYYEQGLIDLAIDTYRRAI-----E--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA  305 (388)
T ss_dssp             --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----H--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred             --hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----H--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccc
Confidence              577788889999999999999999999843     2  234 46788889999999999999999998766   3456


Q ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 036356          357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLSAW  433 (462)
Q Consensus       357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~  433 (462)
                      ..+..+...+...|++++|++.+++..+  +.|+ ..++..+...|.+.|++++|.+.+++. .+.|+ ...|..+...|
T Consensus       306 ~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~  383 (388)
T d1w3ba_         306 DSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL  383 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            6788899999999999999999999988  7787 678899999999999999999999998 77775 66888898888


Q ss_pred             HccCC
Q 036356          434 KIPMQ  438 (462)
Q Consensus       434 ~~~~~  438 (462)
                      .+.||
T Consensus       384 ~~~~D  388 (388)
T d1w3ba_         384 KEMQD  388 (388)
T ss_dssp             HHTCC
T ss_pred             HHcCC
Confidence            87765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.9e-11  Score=109.23  Aligned_cols=117  Identities=14%  Similarity=0.068  Sum_probs=69.7

Q ss_pred             ccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchh
Q 036356          247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI  326 (462)
Q Consensus       247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~  326 (462)
                      .+.+.++...+....+....               ..+...+..+...+...|++++|...|++.+     ... +-+..
T Consensus       149 ~~~~~~a~~~~~~al~~~p~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-----~~~-p~~~~  207 (323)
T d1fcha_         149 DSLFLEVKELFLAAVRLDPT---------------SIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL-----SVR-PNDYL  207 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT---------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHC-TTCHH
T ss_pred             hhHHHHHHHHHHHHHHHhhc---------------ccccccchhhHHHHHHHHHHhhhhccccccc-----ccc-ccccc
Confidence            34455666666665554321               2455666667777777777777777777632     211 11345


Q ss_pred             HHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356          327 VNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRK  384 (462)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  384 (462)
                      .|..+...|.+.|++++|.+.|++..+  | +..+|..+..+|.+.|++++|.+.|++..+
T Consensus       208 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         208 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             chhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            566666666666666666666665542  2 344566666666666666666666666555

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.7e-11  Score=107.33  Aligned_cols=253  Identities=11%  Similarity=0.021  Sum_probs=169.5

Q ss_pred             hccCCChhhHHHHHHhh--cCC-CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL--LSN-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +.+.|++++|+..|+.+  ..| +..+|..+..++...|+++.|...|++..+..+                 -+...|.
T Consensus        29 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~~   91 (323)
T d1fcha_          29 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-----------------DNQTALM   91 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-----------------ccccccc
Confidence            88999999999999999  444 567899999999999999999999999998865                 4667888


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhC
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH  218 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~  218 (462)
                      .+...|...|++++|.+.+++.     ..  ..|+................               .......+..+...
T Consensus        92 ~la~~~~~~~~~~~A~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~  149 (323)
T d1fcha_          92 ALAVSFTNESLQRQACEILRDW-----LR--YTPAYAHLVTPAEEGAGGAG---------------LGPSKRILGSLLSD  149 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH-----HH--TSTTTGGGCC------------------------------CTTHHHHHH
T ss_pred             cccccccccccccccccchhhH-----HH--hccchHHHHHhhhhhhhhcc---------------cccchhhHHHHHHh
Confidence            8999999999999999999986     22  22322111100000000000               00000001111122


Q ss_pred             c--hHHHHHHHhhhc--C---CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHH
Q 036356          219 E--WSAFGSFDGLLS--N---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM  291 (462)
Q Consensus       219 ~--~~a~~~~~~m~~--~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l  291 (462)
                      +  .+|...|.+...  |   +...+..+...+...|++++|...++...+..                 +-+...|..+
T Consensus       150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~l  212 (323)
T d1fcha_         150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-----------------PNDYLLWNKL  212 (323)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-----------------cccccchhhh
Confidence            2  556666665554  3   34556667777788888888888888887764                 2356778888


Q ss_pred             HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C------------Ccc
Q 036356          292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K------------DVV  357 (462)
Q Consensus       292 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------------~~~  357 (462)
                      ...|.+.|++++|.+.|.+.+.     .. +-+...|..+..+|.+.|++++|...|++..+  |            ...
T Consensus       213 g~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~  286 (323)
T d1fcha_         213 GATLANGNQSEEAVAAYRRALE-----LQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN  286 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH-----HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred             hhcccccccchhHHHHHHHHHH-----Hh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHH
Confidence            8888888888888888887432     21 12467788888888888888888888887652  1            111


Q ss_pred             chHHHHHHHHhcCChHHHH
Q 036356          358 MRSAMTVGYGLHGLGEEGW  376 (462)
Q Consensus       358 ~~~~li~~~~~~~~~~~a~  376 (462)
                      .|..+-.++...++.+.+.
T Consensus       287 ~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         287 IWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             HHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHHHHcCCHHHHH
Confidence            3455566666667665443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=9.4e-09  Score=92.19  Aligned_cols=308  Identities=9%  Similarity=0.007  Sum_probs=202.6

Q ss_pred             HHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC----eeeHHHHHHHHHhCCChhHHHHHHHHhhhhh
Q 036356           89 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN----VTLRNAMISGYAKNGYAEEAVKLFPKWMDYY  164 (462)
Q Consensus        89 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  164 (462)
                      ....+...|++++|.+++++..+...                ..+    ...++.+...+...|++++|...|++.....
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~----------------~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   81 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELP----------------PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA   81 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCC----------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCc----------------CCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            34556788999999999999987643                111    2356777888999999999999999862100


Q ss_pred             hhhcCCCC-CchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcC----CcchHHH
Q 036356          165 IGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN----EENEYGT  239 (462)
Q Consensus       165 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~----~~~~~~~  239 (462)
                       ...+..+ ....+..+...+...|++..+...+.+...                      +......+    ....+..
T Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~----------------------~~~~~~~~~~~~~~~~~~~  138 (366)
T d1hz4a_          82 -RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ----------------------LINEQHLEQLPMHEFLVRI  138 (366)
T ss_dssp             -HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HHHHTTCTTSTHHHHHHHH
T ss_pred             -HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HhHhcccchhhHHHHHHHH
Confidence             1111111 234556677778888998888887765321                      11111000    0112344


Q ss_pred             HHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh
Q 036356          240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS  319 (462)
Q Consensus       240 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  319 (462)
                      +...+...|+++.+...+...........            .......+......+...++..++...+.+.... ....
T Consensus       139 la~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-~~~~  205 (366)
T d1hz4a_         139 RAQLLWAWARLDEAEASARSGIEVLSSYQ------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL-LGNG  205 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTTTSC------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HTTS
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHhhhhh------------hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHh
Confidence            55667778899999998888877543211            0123445556667788889999998888775431 1122


Q ss_pred             CCCC--chhHHHHHHHHHHhcCCcchHHHHhccCCCC----C---ccchHHHHHHHHhcCChHHHHHHHHHHHHC----C
Q 036356          320 EYRN--NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK----D---VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----G  386 (462)
Q Consensus       320 ~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g  386 (462)
                      +..+  ....+..+...+...|+.+.|...++...+.    +   ...+..+...+...|++++|...+++....    +
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  285 (366)
T d1hz4a_         206 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR  285 (366)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcc
Confidence            2212  1334566677788999999999999877632    1   123456788899999999999999887643    5


Q ss_pred             CCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC----CHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356          387 IEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-------PIEL----RLSVRRALLSAWKIPMQQWENMLQTIR  448 (462)
Q Consensus       387 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~  448 (462)
                      ..|+ ...+..+...|.+.|++++|.+.+++.       +...    .......++..+...+...++.....+
T Consensus       286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~a~  359 (366)
T d1hz4a_         286 LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQ  359 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            5565 567888999999999999999999876       2211    123455667777777877777654333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=2.2e-08  Score=89.71  Aligned_cols=260  Identities=8%  Similarity=-0.102  Sum_probs=165.4

Q ss_pred             hccCCChhhHHHHHHhh--cCCCc------chHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC
Q 036356           62 HLWSRTEWSAFGSFDGL--LSNEE------NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN  133 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~  133 (462)
                      +...|++++|+.++++.  ..|+.      .++..+..++...|++++|...+++..+....               .++
T Consensus        22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~---------------~~~   86 (366)
T d1hz4a_          22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ---------------HDV   86 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---------------TTC
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh---------------hcc
Confidence            77899999999999988  44432      35677788889999999999999998765430               122


Q ss_pred             ----eeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC---chHHHHHHHHHHhcCCcccHHHHhhccCC----
Q 036356          134 ----VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN---VIVNTVLIDMYAKCGSVDLAPMFFDRTLD----  202 (462)
Q Consensus       134 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~----  202 (462)
                          ..++..+...+...|++..+...+.+.... ....+....   ...+..+...+...|+++.+...++....    
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~  165 (366)
T d1hz4a_          87 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL-INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  165 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence                234566677888999999999998875210 111122221   23556677888999999999998876542    


Q ss_pred             C----CcchHHHHHHHHHhCc--hHHHHHHHhhhc-----C-----CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCC
Q 036356          203 K----DVVMRSAMIVGYGLHE--WSAFGSFDGLLS-----N-----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE  266 (462)
Q Consensus       203 ~----~~~~~~~li~~~~~~~--~~a~~~~~~m~~-----~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  266 (462)
                      .    ....+......+...+  ..+...+.+...     .     ....+......+...|+.+.|...+....+....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  245 (366)
T d1hz4a_         166 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA  245 (366)
T ss_dssp             SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT
T ss_pred             hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccc
Confidence            1    1122223333333333  445544444333     1     1223455556677788888888887766543321


Q ss_pred             cchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHH
Q 036356          267 LESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAP  345 (462)
Q Consensus       267 ~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~  345 (462)
                      .+             ......+..+...+...|++++|...+++.+.. ....+..|+ ...+..+...|.+.|++++|.
T Consensus       246 ~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  311 (366)
T d1hz4a_         246 NN-------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNEN-ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ  311 (366)
T ss_dssp             TC-------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cc-------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhcccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence            10             122344566777888889999998888875432 122344443 445666677777888888887


Q ss_pred             HHhccC
Q 036356          346 MFFDRT  351 (462)
Q Consensus       346 ~~~~~~  351 (462)
                      +.+++.
T Consensus       312 ~~l~~A  317 (366)
T d1hz4a_         312 RVLLDA  317 (366)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=1.3e-07  Score=83.16  Aligned_cols=217  Identities=10%  Similarity=0.007  Sum_probs=128.4

Q ss_pred             hhhHHHHHHhh---cCCCcchHHHHHHhhcC--------------ccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCC
Q 036356           68 EWSAFGSFDGL---LSNEENEYGTALDCSCD--------------LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY  130 (462)
Q Consensus        68 ~~~A~~~~~~m---~~~~~~~~~~ll~~~~~--------------~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~  130 (462)
                      .+++..+|+++   .+.+...|...+..+-+              .+..+.|..+|++..+...                
T Consensus        32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~----------------   95 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL----------------   95 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT----------------
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcC----------------
Confidence            34566778777   44555666555544322              2235677788888776544                


Q ss_pred             CCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHH
Q 036356          131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA  210 (462)
Q Consensus       131 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  210 (462)
                      +.+...|...+....+.|+++.|..+|+.+     ..........+|...+....+.|+++.|.++|++..+....++..
T Consensus        96 p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~-----l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~  170 (308)
T d2onda1          96 KKNMLLYFAYADYEESRMKYEKVHSIYNRL-----LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV  170 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHH
T ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHH-----HHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHH
Confidence            345566777788888889999999988886     332222224467788888888888888888887765433322222


Q ss_pred             HHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHH
Q 036356          211 MIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA  290 (462)
Q Consensus       211 li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  290 (462)
                      .+.                         ....-+...|+.+.|..+|+.+.+..                 +.+...|..
T Consensus       171 ~~~-------------------------~a~~e~~~~~~~~~a~~i~e~~l~~~-----------------p~~~~~w~~  208 (308)
T d2onda1         171 YVT-------------------------AALMEYYCSKDKSVAFKIFELGLKKY-----------------GDIPEYVLA  208 (308)
T ss_dssp             HHH-------------------------HHHHHHHTSCCHHHHHHHHHHHHHHH-----------------TTCHHHHHH
T ss_pred             HHH-------------------------HHHHHHHhccCHHHHHHHHHHHHHhh-----------------hhhHHHHHH
Confidence            111                         00111223456666777777666652                 235566777


Q ss_pred             HHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc--hhHHHHHHHHHHhcCCcchHHHHhccC
Q 036356          291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRT  351 (462)
Q Consensus       291 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~  351 (462)
                      .+..+.+.|+.++|..+|++.+    ...+..|.  ...|...+..-...|+.+.+.++++++
T Consensus       209 y~~~~~~~g~~~~aR~~fe~ai----~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~  267 (308)
T d2onda1         209 YIDYLSHLNEDNNTRVLFERVL----TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHH----HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHH----HhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7777777777777777777632    22223332  234555555545556655555555544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3.7e-07  Score=80.27  Aligned_cols=210  Identities=9%  Similarity=-0.065  Sum_probs=156.0

Q ss_pred             hccCCChhhHHHHHHhh--cCC-CcchHHHHHHhhcCcc-chhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeH
Q 036356           62 HLWSRTEWSAFGSFDGL--LSN-EENEYGTALDCSCDLE-FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR  137 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~~-~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~  137 (462)
                      +.+.+.+++|+++++++  ..| +..+|+....++...| ++++|...++...+..+                 -+..+|
T Consensus        53 ~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-----------------~~~~a~  115 (315)
T d2h6fa1          53 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-----------------KNYQVW  115 (315)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-----------------TCHHHH
T ss_pred             HHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-----------------hhhhHH
Confidence            77889999999999999  555 4567888888887766 58999999999998875                 678899


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHHHHHHH
Q 036356          138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMIVG  214 (462)
Q Consensus       138 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~  214 (462)
                      +.+...+.+.|++++|+..+++.     .+ --+.+...|..+...+.+.|++++|+..+++..+   .+...|+.+...
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~ka-----l~-~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~  189 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADI-----LN-QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV  189 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHH-----HH-HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhHHHHhhccHHHHHHHHhhh-----hh-hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHH
Confidence            99999999999999999999996     22 2344588999999999999999999999998774   355667766555


Q ss_pred             HHhCc--------hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCC
Q 036356          215 YGLHE--------WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP  283 (462)
Q Consensus       215 ~~~~~--------~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  283 (462)
                      +.+.+        ++|+..+.+..+  | +...|+.+...+... ..+++.+.++...+....               ..
T Consensus       190 l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~---------------~~  253 (315)
T d2h6fa1         190 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPS---------------HS  253 (315)
T ss_dssp             HHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTT---------------CC
T ss_pred             HHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCC---------------cC
Confidence            54433        578888888777  5 455666666655544 468888888888776432               23


Q ss_pred             CHhHHHHHHHHHHcC--CChhHHHHHhhH
Q 036356          284 NVTLWNAMISGYAKN--GYAEEAVKLFPK  310 (462)
Q Consensus       284 ~~~~~~~li~~~~~~--~~~~~a~~~~~~  310 (462)
                      +...+..+...|...  +..+.+...+.+
T Consensus       254 ~~~~~~~l~~~y~~~~~~~~~~~~~~~~k  282 (315)
T d2h6fa1         254 SPYLIAFLVDIYEDMLENQCDNKEDILNK  282 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            445556666665443  344444444443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=5.1e-07  Score=79.18  Aligned_cols=179  Identities=11%  Similarity=0.031  Sum_probs=136.1

Q ss_pred             cchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhH
Q 036356          248 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV  327 (462)
Q Consensus       248 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~  327 (462)
                      +..+++..+|+..++...                +.+...|...+..+.+.|+.++|..+|++.+     ..........
T Consensus        78 ~~~~~a~~i~~ral~~~~----------------p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l-----~~~~~~~~~~  136 (308)
T d2onda1          78 LFSDEAANIYERAISTLL----------------KKNMLLYFAYADYEESRMKYEKVHSIYNRLL-----AIEDIDPTLV  136 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTT----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----TSSSSCTHHH
T ss_pred             cchHHHHHHHHHHHHHcC----------------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHH-----HHhcCChHHH
Confidence            456778888888776533                2466778888899999999999999999843     3222223457


Q ss_pred             HHHHHHHHHhcCCcchHHHHhccCCCCCccc---hHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHH
Q 036356          328 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM---RSAMTVG-YGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLA  402 (462)
Q Consensus       328 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~  402 (462)
                      |...+..+.+.|+.+.|..+|+...+....+   |...... +...|+.+.|..+|+.+.+  ..|+ ...|..+++.+.
T Consensus       137 w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~--~~p~~~~~w~~y~~~~~  214 (308)
T d2onda1         137 YIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLS  214 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHH
Confidence            8899999999999999999999877533333   3332222 2345889999999999998  4455 778999999999


Q ss_pred             hcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356          403 RAGYSNHAFKFIMNM----PIELR--LSVRRALLSAWKIPMQQWENMLQTIRG  449 (462)
Q Consensus       403 ~~g~~~~A~~~~~~m----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~  449 (462)
                      +.|++++|..+|++.    +..|+  ...|...+.--...|+.+.+.....++
T Consensus       215 ~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~  267 (308)
T d2onda1         215 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999997    34443  458898888888889998888666555

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.6e-07  Score=79.68  Aligned_cols=188  Identities=11%  Similarity=-0.038  Sum_probs=138.7

Q ss_pred             hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC-hhHHHHHhhHHHHH
Q 036356          236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY-AEEAVKLFPKWMDY  314 (462)
Q Consensus       236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~  314 (462)
                      .|+.+-..+.+.+..++|+++++.+++..                 +-+...|+....++...|+ +++|+..+...+  
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-----------------P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al--  105 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELN-----------------AANYTVWHFRRVLLKSLQKDLHEEMNYITAII--  105 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHC-----------------CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHH--
Confidence            34555566677888999999999999875                 2466778888888888764 899999998843  


Q ss_pred             HHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 036356          315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-  390 (462)
Q Consensus       315 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-  390 (462)
                         ... +-+..+|+.+...+.+.|++++|...++++.+   .+...|..+...+...|++++|++.++++.+  +.|+ 
T Consensus       106 ---~~~-p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n  179 (315)
T d2h6fa1         106 ---EEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRN  179 (315)
T ss_dssp             ---HHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTC
T ss_pred             ---HHH-HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCcc
Confidence               222 23577888888889999999999999998873   4677888889999999999999999999998  6675 


Q ss_pred             HhHHHHHHHHHHhcCC------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356          391 HQHYARVVDLLARAGY------SNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRG  449 (462)
Q Consensus       391 ~~~~~~li~~~~~~g~------~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~  449 (462)
                      ...|+.+...+.+.+.      +++|++.+.+. ...| +...|..+...+...| ..++...+.+.
T Consensus       180 ~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~  245 (315)
T d2h6fa1         180 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQL  245 (315)
T ss_dssp             HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHH
Confidence            6677777766666665      56788777776 4445 5666766655554443 45566555444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.55  E-value=2e-07  Score=82.86  Aligned_cols=257  Identities=7%  Similarity=-0.047  Sum_probs=148.9

Q ss_pred             CChhhHHHHHHhh--cCCCcc-hHHHHH---Hhhc-------CccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCC
Q 036356           66 RTEWSAFGSFDGL--LSNEEN-EYGTAL---DCSC-------DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP  132 (462)
Q Consensus        66 ~~~~~A~~~~~~m--~~~~~~-~~~~ll---~~~~-------~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p  132 (462)
                      ...++|+++++..  ..|+.. .|+..-   ..+.       ..|++++|..+++...+..+                 .
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-----------------k  105 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-----------------K  105 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-----------------T
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-----------------C
Confidence            3457999999988  666654 343322   2222       23456788888888887764                 5


Q ss_pred             CeeeHHHHHHHHHhCC--ChhHHHHHHHHhhhhhhhhcCCCCCchHHH-HHHHHHHhcCCcccHHHHhhccCCCCcchHH
Q 036356          133 NVTLRNAMISGYAKNG--YAEEAVKLFPKWMDYYIGKSEYRNNVIVNT-VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS  209 (462)
Q Consensus       133 ~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~  209 (462)
                      +...|..+..++...+  ++++|+..+++.     ... .+++...+. .+...+...+.+++|...+++....++.   
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a-----l~~-~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~---  176 (334)
T d1dcea1         106 SYGTWHHRCWLLSRLPEPNWARELELCARF-----LEA-DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS---  176 (334)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHH-----HHH-CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC---
T ss_pred             cHHHHHHhhHHHHHhccccHHHHHHHHHHH-----Hhh-CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC---
Confidence            6667777766666655  478888888885     222 223344443 3445666677777777777776654432   


Q ss_pred             HHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHH
Q 036356          210 AMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN  289 (462)
Q Consensus       210 ~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  289 (462)
                                                                                                +...|+
T Consensus       177 --------------------------------------------------------------------------~~~a~~  182 (334)
T d1dcea1         177 --------------------------------------------------------------------------NYSSWH  182 (334)
T ss_dssp             --------------------------------------------------------------------------CHHHHH
T ss_pred             --------------------------------------------------------------------------CHHHHH
Confidence                                                                                      233344


Q ss_pred             HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHH
Q 036356          290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGY  366 (462)
Q Consensus       290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~  366 (462)
                      .+...+.+.|++++|...+...+.       ..|+   .......+...+..+.+...+....   .++...+..+...+
T Consensus       183 ~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~  252 (334)
T d1dcea1         183 YRSCLLPQLHPQPDSGPQGRLPEN-------VLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKS  252 (334)
T ss_dssp             HHHHHHHHHSCCCCSSSCCSSCHH-------HHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhHH-------hHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            444444444444444444433211       0011   0112223344455555555555432   23455566666777


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHH
Q 036356          367 GLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS-VRRALLSAWK  434 (462)
Q Consensus       367 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~  434 (462)
                      ...++.++|...+.+...  ..|+ ..+|..+...+...|++++|.+.+++. .+.|+.. -|..|...+.
T Consensus       253 ~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         253 TVLQSELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            777777888777777766  5554 566777777788888888888888877 5556433 4444444433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=5.1e-08  Score=86.92  Aligned_cols=238  Identities=6%  Similarity=-0.149  Sum_probs=151.3

Q ss_pred             cCCCCccchhhhHhHhhhCchhhhhhhcCCCCCce-eehhh-------------hccCCChhhHHHHHHhh---cCCCcc
Q 036356           22 ALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIV-FLDLY-------------HLWSRTEWSAFGSFDGL---LSNEEN   84 (462)
Q Consensus        22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~~~~A~~~~~~m---~~~~~~   84 (462)
                      .....++|..+++..++..            |+.. .|+..             +...|++.+|+.+++..   .+.+..
T Consensus        41 ~~~~~~~al~~~~~~l~~~------------P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~  108 (334)
T d1dcea1          41 AGELDESVLELTSQILGAN------------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG  108 (334)
T ss_dssp             TTCCSHHHHHHHHHHHHHC------------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             cccccHHHHHHHHHHHHHC------------CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHH
Confidence            3334578999999998775            4443 34332             44455688999999998   444566


Q ss_pred             hHHHHHHhhcCcc--chhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHH-HHHHHhCCChhHHHHHHHHhh
Q 036356           85 EYGTALDCSCDLE--FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAM-ISGYAKNGYAEEAVKLFPKWM  161 (462)
Q Consensus        85 ~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~  161 (462)
                      .|..+..++...+  ++++|...++.+.+..+                 ++...+... ...+...|.+++|+..++.. 
T Consensus       109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~-  170 (334)
T d1dcea1         109 TWHHRCWLLSRLPEPNWARELELCARFLEADE-----------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSL-  170 (334)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTT-
T ss_pred             HHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-----------------hhhhhhhhHHHHHHHhccccHHHHHHHHHH-
Confidence            7777766666555  58899999999998865                 566666544 46677889999999999986 


Q ss_pred             hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc-hHHHHHHHhhhc---CCcchH
Q 036356          162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-WSAFGSFDGLLS---NEENEY  237 (462)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~-~~a~~~~~~m~~---~~~~~~  237 (462)
                          .... +-+...|+.+..++.+.|++++|...+++..+................. .++...+.....   ++...+
T Consensus       171 ----i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~  245 (334)
T d1dcea1         171 ----ITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRC  245 (334)
T ss_dssp             ----TTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSC
T ss_pred             ----HHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHH
Confidence                2222 3457788889999999999999988877655432222222222221222 444444444433   334444


Q ss_pred             HHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHH
Q 036356          238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW  311 (462)
Q Consensus       238 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  311 (462)
                      ..+...+...++.++|...+....+...                 .+...|..+...|.+.|+.++|.+.+++.
T Consensus       246 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p-----------------~~~~~~~~l~~~~~~~~~~~eA~~~~~~a  302 (334)
T d1dcea1         246 ELSVEKSTVLQSELESCKELQELEPENK-----------------WCLLTIILLMRALDPLLYEKETLQYFSTL  302 (334)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCTTCH-----------------HHHHHHHHHHHHHCTGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhCc-----------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4455555556666666666665544321                 23455556666666677777777777663

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=1.8e-06  Score=74.77  Aligned_cols=202  Identities=10%  Similarity=-0.020  Sum_probs=127.7

Q ss_pred             HHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHH
Q 036356          180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVH  257 (462)
Q Consensus       180 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~  257 (462)
                      ..+.|...|++++|.+.|.+..+                      +..+...  .-..+|..+..+|.+.|++++|...+
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~----------------------~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~  100 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAAD----------------------YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL  100 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHH----------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            34567788888888877765331                      1111111  11235666677788888888888888


Q ss_pred             HHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHH-cCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHH
Q 036356          258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYA-KNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMY  335 (462)
Q Consensus       258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~  335 (462)
                      +...+.....+.           ......++..+...|. ..|++++|.+.+.+.+.-. ...+..+ ...++..+...|
T Consensus       101 ~~a~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~-~~~~~~~~~~~~~~~la~~~  168 (290)
T d1qqea_         101 ENAIQIFTHRGQ-----------FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY-AQDQSVALSNKCFIKCADLK  168 (290)
T ss_dssp             HHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHhhHHhhhccc-----------chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH-HhcCchhhhhhHHHHHHHHH
Confidence            876653211000           0012445666666664 4699999999998865421 2222222 245678888999


Q ss_pred             HhcCCcchHHHHhccCCC--CCc--c------chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HhHHHHHHH
Q 036356          336 AKCGSVDLAPMFFDRTLD--KDV--V------MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR------HQHYARVVD  399 (462)
Q Consensus       336 ~~~g~~~~A~~~~~~~~~--~~~--~------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~li~  399 (462)
                      .+.|++++|...|++...  ++.  .      .+...+..+...|+++.|...+++..+  +.|+      ......++.
T Consensus       169 ~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~--~~~~~~~sre~~~l~~l~~  246 (290)
T d1qqea_         169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLID  246 (290)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHH
T ss_pred             HHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCccchHHHHHHHHHHH
Confidence            999999999999987652  111  1      123455566778999999999999887  4443      234456666


Q ss_pred             HHHh--cCChHHHHHHHHhC
Q 036356          400 LLAR--AGYSNHAFKFIMNM  417 (462)
Q Consensus       400 ~~~~--~g~~~~A~~~~~~m  417 (462)
                      ++-.  .+.+++|+.-|+.+
T Consensus       247 a~~~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         247 AVNEGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             HHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHhcCHHHHHHHHHHHHHH
Confidence            6655  34588899988887

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=7.8e-07  Score=75.63  Aligned_cols=180  Identities=7%  Similarity=-0.135  Sum_probs=123.2

Q ss_pred             hccCCChhhHHHHHHhh--cC-CCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL--LS-NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      |.+.|++++|+..|++.  .. .+..+|+.+..++.+.|++++|...|++..+..+                 -+..+|.
T Consensus        47 y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~a~~  109 (259)
T d1xnfa_          47 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-----------------TYNYAHL  109 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCTHHHH
T ss_pred             HHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-----------------hhhhhHH
Confidence            89999999999999999  44 4577899999999999999999999999999865                 4567888


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHH-HHHHHHh
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA-MIVGYGL  217 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-li~~~~~  217 (462)
                      .+..++...|++++|...|+..     .+.. +.+......+..++.+.+..+.+..+.......+...++. ++..+..
T Consensus       110 ~lg~~~~~~g~~~~A~~~~~~a-----l~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (259)
T d1xnfa_         110 NRGIALYYGGRDKLAQDDLLAF-----YQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG  183 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH-----HHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHH-----Hhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHH
Confidence            8999999999999999999986     3322 2334444444445555565555544444433322222222 2222222


Q ss_pred             Cc------hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhC
Q 036356          218 HE------WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLG  264 (462)
Q Consensus       218 ~~------~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  264 (462)
                      ..      +.+...+.....  |+ ..+|..+...+...|++++|...|+..++..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         184 NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            21      222222222222  22 3466778888999999999999999988753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=5.6e-07  Score=76.54  Aligned_cols=114  Identities=7%  Similarity=-0.131  Sum_probs=89.1

Q ss_pred             CChhhHHHHHHhh-c--C---C-CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           66 RTEWSAFGSFDGL-L--S---N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        66 ~~~~~A~~~~~~m-~--~---~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      .+.+.|+.-+++. .  .   + ...+|..+..++.+.|++++|...|++..+..+                 -+..+|+
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-----------------~~~~a~~   75 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-----------------DMPEVFN   75 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------------CCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-----------------CCHHHHh
Confidence            3455566666666 1  1   1 233677778888999999999999999998865                 5778899


Q ss_pred             HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC
Q 036356          139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD  202 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  202 (462)
                      .+..++.+.|++++|++.|++.     .... +-+..++..+..+|...|++++|...|++..+
T Consensus        76 ~lg~~~~~~g~~~~A~~~~~~a-----l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  133 (259)
T d1xnfa_          76 YLGIYLTQAGNFDAAYEAFDSV-----LELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ  133 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH-----HHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhchHHHHHHHHHHhhhhhhHH-----HHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            9999999999999999999996     3322 23466788899999999999999999987653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=3.1e-06  Score=68.18  Aligned_cols=122  Identities=10%  Similarity=-0.067  Sum_probs=92.1

Q ss_pred             HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHh
Q 036356          292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGL  368 (462)
Q Consensus       292 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~  368 (462)
                      ...+...|++++|++.|.+     +    ..|+..+|..+..+|...|++++|...|++..+   .+...|..+..+|.+
T Consensus        12 g~~~~~~~d~~~Al~~~~~-----i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSA-----V----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHT-----S----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHh-----c----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence            6677888899999888876     2    346677788888888999999999999988763   356678888888888


Q ss_pred             cCChHHHHHHHHHHHHCC------------C--CCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036356          369 HGLGEEGWVLFHHIRKHG------------I--EPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR  422 (462)
Q Consensus       369 ~~~~~~a~~~~~~m~~~g------------~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~  422 (462)
                      .|++++|.+.|++.....            .  .++ ..++..+..++.+.|++++|.+.++.. ...|+
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            999999998888876521            1  111 245566777888889999998888877 55565

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=2.7e-06  Score=73.71  Aligned_cols=199  Identities=9%  Similarity=-0.045  Sum_probs=134.5

Q ss_pred             HHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHh
Q 036356          239 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGK  318 (462)
Q Consensus       239 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  318 (462)
                      .....|...+++++|...|....+.....+.           ...-..+|..+..+|.+.|++++|.+.+.+.+.-....
T Consensus        42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~-----------~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~  110 (290)
T d1qqea_          42 QAATIYRLRKELNLAGDSFLKAADYQKKAGN-----------EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR  110 (290)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC-----------CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc
Confidence            3456777888999999999887764211000           00124678889999999999999999999866532222


Q ss_pred             hCCCCchhHHHHHHHHHHh-cCCcchHHHHhccCCC-----C----CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036356          319 SEYRNNVIVNTVLIDMYAK-CGSVDLAPMFFDRTLD-----K----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE  388 (462)
Q Consensus       319 ~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  388 (462)
                      ........++..+...|.. .|++++|...+++..+     .    -..+|..+...|...|++++|.+.+++.......
T Consensus       111 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~  190 (290)
T d1qqea_         111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG  190 (290)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCcc
Confidence            2222235566667777754 6999999999987642     1    1235778899999999999999999998884211


Q ss_pred             C-----CH-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC------HHHHHHHHHHHHcc--CChHHHHHHHHh
Q 036356          389 P-----RH-QHYARVVDLLARAGYSNHAFKFIMNM-PIELR------LSVRRALLSAWKIP--MQQWENMLQTIR  448 (462)
Q Consensus       389 p-----~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~l~~~~~~~--~~~~~a~~~~~~  448 (462)
                      .     .. ..+...+..+...|+++.|.+.+++. .+.|+      ......++.++...  +.+.+|+..+.+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~  265 (290)
T d1qqea_         191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN  265 (290)
T ss_dssp             CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred             chhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            1     11 22345555677889999999999998 44443      23456677776652  446777766543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.7e-05  Score=63.68  Aligned_cols=119  Identities=12%  Similarity=-0.082  Sum_probs=100.0

Q ss_pred             HHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHH
Q 036356          332 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHA  410 (462)
Q Consensus       332 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A  410 (462)
                      ...+...|+++.|.+.|+++.+++..+|..+..+|...|++++|++.|++..+  +.|+ ...|..+..+|.+.|++++|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence            44567889999999999999889999999999999999999999999999998  7787 77899999999999999999


Q ss_pred             HHHHHhC--CCC---------------CC-HHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          411 FKFIMNM--PIE---------------LR-LSVRRALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       411 ~~~~~~m--~~~---------------p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      ++.|++.  -.+               ++ ..++..+..++...|++++|...+.+.+..
T Consensus        90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            9988875  111               11 245667888899999999999887766543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.1e-05  Score=58.85  Aligned_cols=87  Identities=15%  Similarity=0.123  Sum_probs=47.7

Q ss_pred             HHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHH
Q 036356          334 MYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNH  409 (462)
Q Consensus       334 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~  409 (462)
                      .+.+.|++++|...|++..   ..+...|..+..+|...|++++|+..+.+..+  +.|+ ...|..+..++...|++++
T Consensus        12 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHH--hccchhhHHHHHHHHHHHccCHHH
Confidence            3444555555555555443   12344455555566666666666666666665  3343 4555666666666666666


Q ss_pred             HHHHHHhC-CCCCC
Q 036356          410 AFKFIMNM-PIELR  422 (462)
Q Consensus       410 A~~~~~~m-~~~p~  422 (462)
                      |+..+++. ...|+
T Consensus        90 A~~~~~~a~~~~p~  103 (117)
T d1elwa_          90 AKRTYEEGLKHEAN  103 (117)
T ss_dssp             HHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHhCCC
Confidence            66666655 44443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=2e-05  Score=63.62  Aligned_cols=93  Identities=6%  Similarity=-0.102  Sum_probs=80.0

Q ss_pred             CchhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHH
Q 036356          323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVV  398 (462)
Q Consensus       323 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li  398 (462)
                      |+...+-.....|.+.|++++|...|++..   ..+...|..+..+|.+.|++++|+..|++..+  +.|+ ...|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHH
Confidence            666777777888999999999999998765   24667788889999999999999999999987  7787 77888999


Q ss_pred             HHHHhcCChHHHHHHHHhC
Q 036356          399 DLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       399 ~~~~~~g~~~~A~~~~~~m  417 (462)
                      .+|.+.|++++|+..+++.
T Consensus        80 ~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999886

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.7e-05  Score=61.47  Aligned_cols=84  Identities=11%  Similarity=0.076  Sum_probs=60.5

Q ss_pred             HHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCh
Q 036356          332 IDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYS  407 (462)
Q Consensus       332 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~  407 (462)
                      ...|.+.|++++|...|++..+   .+...|..+..+|...|++++|...|++..+  +.|+ ...|..+..+|...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHHHHHcCCH
Confidence            3455667777777777776552   3555677777777778888888888888777  5566 46777777788888888


Q ss_pred             HHHHHHHHhC
Q 036356          408 NHAFKFIMNM  417 (462)
Q Consensus       408 ~~A~~~~~~m  417 (462)
                      ++|.+.+++.
T Consensus        95 ~eA~~~~~~a  104 (159)
T d1a17a_          95 RAALRDYETV  104 (159)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877776

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=1.1e-05  Score=65.35  Aligned_cols=127  Identities=9%  Similarity=-0.058  Sum_probs=97.7

Q ss_pred             CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-Cccch
Q 036356          283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMR  359 (462)
Q Consensus       283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~  359 (462)
                      |++..+......|.+.|++++|+..|.+.+.     .. +-+...|..+..+|.+.|++++|...|+...+  | +..+|
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~-----~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~   75 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT-----RN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH   75 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHH
Confidence            7778888888999999999999999999543     22 33578899999999999999999999998874  4 46678


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      ..+..+|...|++++|+..|++..+  +.|+ ...+...+..+...+....+.......
T Consensus        76 ~~lg~~~~~l~~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  132 (201)
T d2c2la1          76 FFLGQCQLEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALRIAKKKRWNSIEERR  132 (201)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            9999999999999999999999887  4453 223334445555544445554444444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.4e-05  Score=56.99  Aligned_cols=81  Identities=9%  Similarity=-0.105  Sum_probs=45.3

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +...|++++|+..|++.   .+.+...|..+..++.+.|++++|...+....+.++                 .+...|.
T Consensus        13 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~~   75 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-----------------DWGKGYS   75 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhcc-----------------chhhHHH
Confidence            34455566666666555   333344555555555555666666666666555544                 4555555


Q ss_pred             HHHHHHHhCCChhHHHHHHHH
Q 036356          139 AMISGYAKNGYAEEAVKLFPK  159 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~  159 (462)
                      .+..++...|++++|+..|++
T Consensus        76 ~~g~~~~~~~~~~~A~~~~~~   96 (117)
T d1elwa_          76 RKAAALEFLNRFEEAKRTYEE   96 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHH
Confidence            555555666666666665555

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.94  E-value=0.0027  Score=54.86  Aligned_cols=282  Identities=9%  Similarity=-0.055  Sum_probs=146.0

Q ss_pred             CCceeehhh---hccCCChhhHHHHHHhhcCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcC
Q 036356           53 RTIVFLDLY---HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR  129 (462)
Q Consensus        53 ~~~~~~~~~---~~~~~~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~  129 (462)
                      ||..--..+   |.+.|.++.|..+|.     +..-|..++..+.+.++++.|.+++.   +.                 
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~-----~~~d~~rl~~~~v~l~~~~~avd~~~---k~-----------------   66 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYN-----NVSNFGRLASTLVHLGEYQAAVDGAR---KA-----------------   66 (336)
T ss_dssp             C----------------CTTTHHHHHH-----HTTCHHHHHHHHHTTTCHHHHHHHHH---HH-----------------
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHH-----hCCCHHHHHHHHHhhccHHHHHHHHH---Hc-----------------
Confidence            444433333   667888888887775     66677888888888888887766654   22                 


Q ss_pred             CCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC---CCCcc
Q 036356          130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVV  206 (462)
Q Consensus       130 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~  206 (462)
                        -+..+|..+..++.+.....-|.-+          ......+......++..|-..|.+++...+++...   ..+..
T Consensus        67 --~~~~~~k~~~~~l~~~~e~~la~i~----------~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~  134 (336)
T d1b89a_          67 --NSTRTWKEVCFACVDGKEFRLAQMC----------GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG  134 (336)
T ss_dssp             --TCHHHHHHHHHHHHHTTCHHHHHHT----------TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH
T ss_pred             --CCHHHHHHHHHHHHhCcHHHHHHHH----------HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchH
Confidence              2456777788888777665543221          22233344455667888888888888888887543   33445


Q ss_pred             hHHHHHHHHHhCc-hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCH
Q 036356          207 MRSAMIVGYGLHE-WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV  285 (462)
Q Consensus       207 ~~~~li~~~~~~~-~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  285 (462)
                      .++-++..|++.+ ++-++.++..  .+..-...++..|.+.+.++++.-                              
T Consensus       135 ~~~~L~~lyak~~~~kl~e~l~~~--s~~y~~~k~~~~c~~~~l~~elv~------------------------------  182 (336)
T d1b89a_         135 MFTELAILYSKFKPQKMREHLELF--WSRVNIPKVLRAAEQAHLWAELVF------------------------------  182 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH--STTSCHHHHHHHHHTTTCHHHHHH------------------------------
T ss_pred             HHHHHHHHHHHhChHHHHHHHHhc--cccCCHHHHHHHHHHcCChHHHHH------------------------------
Confidence            5667777777766 5544444433  233333444555555555544444                              


Q ss_pred             hHHHHHHHHHHcCCChhHHHHHhhHHHH-----H-HHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccch
Q 036356          286 TLWNAMISGYAKNGYAEEAVKLFPKWMD-----Y-YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR  359 (462)
Q Consensus       286 ~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~-~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~  359 (462)
                              .|.+.|++++|..+.-.-..     . ...-..-..|+..|-..+..|... +.+-...++..+..  ...-
T Consensus       183 --------Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~--~~d~  251 (336)
T d1b89a_         183 --------LYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-KPLLLNDLLMVLSP--RLDH  251 (336)
T ss_dssp             --------HHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-CGGGHHHHHHHHGG--GCCH
T ss_pred             --------HHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc-CHHHHHHHHHHhcc--CCCH
Confidence                    44444444444444321000     0 000000001222222223323221 11111112211111  1122


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      ..++..+-+.++......+++.....|.   ....++|.+.|...++++.-.+.++.-
T Consensus       252 ~r~V~~~~k~~~l~li~p~Le~v~~~n~---~~vn~al~~lyie~~d~~~l~~~i~~~  306 (336)
T d1b89a_         252 TRAVNYFSKVKQLPLVKPYLRSVQNHNN---KSVNESLNNLFITEEDYQALRTSIDAY  306 (336)
T ss_dssp             HHHHHHHHHTTCTTTTHHHHHHHHTTCC---HHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHcCh---HHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence            4456666667777777777777665443   357888888888888877766666554

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.88  E-value=0.0049  Score=53.11  Aligned_cols=242  Identities=11%  Similarity=0.028  Sum_probs=128.9

Q ss_pred             hccCCChhhHHHHHHhhcCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHH
Q 036356           62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMI  141 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li  141 (462)
                      +.+.+++..|.+++.+.  .+..+|..+...|.+......+     ++.....                ..+......++
T Consensus        50 ~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~----------------~~~~d~l~~~v  106 (336)
T d1b89a_          50 LVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLA-----QMCGLHI----------------VVHADELEELI  106 (336)
T ss_dssp             HHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTT----------------TTCHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHh----------------hcCHHHHHHHH
Confidence            45555666666555544  3455777777777665544332     1212222                34455567789


Q ss_pred             HHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc--
Q 036356          142 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--  219 (462)
Q Consensus       142 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~--  219 (462)
                      ..|-..|.+++...+++..     . ..-..+...++.++..|++.+ .++..+.+...  .+.....-++..|-+.+  
T Consensus       107 ~~ye~~~~~e~Li~~Le~~-----~-~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~--s~~y~~~k~~~~c~~~~l~  177 (336)
T d1b89a_         107 NYYQDRGYFEELITMLEAA-----L-GLERAHMGMFTELAILYSKFK-PQKMREHLELF--WSRVNIPKVLRAAEQAHLW  177 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----T-TSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH--STTSCHHHHHHHHHTTTCH
T ss_pred             HHHHHcCChHHHHHHHHHH-----H-cCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc--cccCCHHHHHHHHHHcCCh
Confidence            9999999999999999984     2 223556778899999999865 34444444432  23344445566666655  


Q ss_pred             hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCC
Q 036356          220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG  299 (462)
Q Consensus       220 ~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~  299 (462)
                      +++.-++.++                  |+++.|..+.   .++                  .+++......+..+.+..
T Consensus       178 ~elv~Ly~~~------------------~~~~~A~~~~---i~~------------------~~~~~~~~~f~e~~~k~~  218 (336)
T d1b89a_         178 AELVFLYDKY------------------EEYDNAIITM---MNH------------------PTDAWKEGQFKDIITKVA  218 (336)
T ss_dssp             HHHHHHHHHT------------------TCHHHHHHHH---HHS------------------TTTTCCHHHHHHHHHHCS
T ss_pred             HHHHHHHHhc------------------CCHHHHHHHH---HHc------------------chhhhhHHHHHHHHHccC
Confidence            4555555444                  4444443322   111                  122222233333333444


Q ss_pred             ChhHHHHHhhHHHHH-------HHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-CCccchHHHHHHHHhcCC
Q 036356          300 YAEEAVKLFPKWMDY-------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMTVGYGLHGL  371 (462)
Q Consensus       300 ~~~~a~~~~~~~~~~-------~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~  371 (462)
                      +++...++....++.       .+...+...|.   .-+++.+.+.+++......++...+ .+....++|...|...++
T Consensus       219 N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~---~r~V~~~~k~~~l~li~p~Le~v~~~n~~~vn~al~~lyie~~d  295 (336)
T d1b89a_         219 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDH---TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEED  295 (336)
T ss_dssp             STHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCH---HHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCH---HHHHHHHHhcCCcHHHHHHHHHHHHcChHHHHHHHHHHHhCcch
Confidence            433333333321110       00001111111   2245555566666666666655443 345577889999999988


Q ss_pred             hHHHHH
Q 036356          372 GEEGWV  377 (462)
Q Consensus       372 ~~~a~~  377 (462)
                      ++.-.+
T Consensus       296 ~~~l~~  301 (336)
T d1b89a_         296 YQALRT  301 (336)
T ss_dssp             HHHHHH
T ss_pred             hHHHHH
Confidence            755433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.87  E-value=4.6e-05  Score=54.92  Aligned_cols=88  Identities=10%  Similarity=-0.018  Sum_probs=63.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHcc
Q 036356          360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIP  436 (462)
Q Consensus       360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~  436 (462)
                      -.+...+.+.|++++|...|++..+  ..|+ ...|..+..++.+.|++++|+..+++. .+.| +...|..+...|...
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            3455667777888888888888777  5665 667777777777888888888877776 3344 466777777778888


Q ss_pred             CChHHHHHHHHhh
Q 036356          437 MQQWENMLQTIRG  449 (462)
Q Consensus       437 ~~~~~a~~~~~~~  449 (462)
                      |+.++|+..+.+-
T Consensus        98 g~~~~A~~~l~~~  110 (112)
T d1hxia_          98 HNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            8888777766653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=2.3e-05  Score=60.72  Aligned_cols=82  Identities=10%  Similarity=-0.074  Sum_probs=53.7

Q ss_pred             hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356           62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN  138 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~  138 (462)
                      +.+.|++++|+..|++.   .+.+...|..+..++...|++++|...|++.++..+                 -+..+|.
T Consensus        20 ~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-----------------~~~~a~~   82 (159)
T d1a17a_          20 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-----------------KYIKGYY   82 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred             HHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-----------------cchHHHH
Confidence            55667777777777766   333455666666666677777777777777766654                 4456666


Q ss_pred             HHHHHHHhCCChhHHHHHHHHh
Q 036356          139 AMISGYAKNGYAEEAVKLFPKW  160 (462)
Q Consensus       139 ~li~~~~~~g~~~~a~~~~~~m  160 (462)
                      .+..++...|++++|...|++.
T Consensus        83 ~~g~~~~~~g~~~eA~~~~~~a  104 (159)
T d1a17a_          83 RRAASNMALGKFRAALRDYETV  104 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Confidence            6667777777777777776664

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.76  E-value=2.2e-05  Score=56.70  Aligned_cols=84  Identities=11%  Similarity=0.045  Sum_probs=63.9

Q ss_pred             HHHHHHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCC
Q 036356          331 LIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGY  406 (462)
Q Consensus       331 li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~  406 (462)
                      +...+.+.|++++|...|++..  .| +..+|..+..++.+.|++++|+..|++..+  +.|+ ...|..+...|...|+
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHCCC
Confidence            4455667777888887777765  23 456777778888888888888888888877  6676 6777888888888888


Q ss_pred             hHHHHHHHHh
Q 036356          407 SNHAFKFIMN  416 (462)
Q Consensus       407 ~~~A~~~~~~  416 (462)
                      +++|++.+++
T Consensus       100 ~~~A~~~l~~  109 (112)
T d1hxia_         100 ANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888775

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00093  Score=51.86  Aligned_cols=121  Identities=7%  Similarity=-0.075  Sum_probs=79.2

Q ss_pred             HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHh
Q 036356          289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL  368 (462)
Q Consensus       289 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~  368 (462)
                      ......+.+.|++++|...|.+.+.  .............. .+            ..+       -..+|+.+..+|.+
T Consensus        17 ~~~G~~~~~~~~~~~Ai~~y~~al~--~~~~~~~~~~~~~~-~~------------~~~-------~~~~~~nla~~y~k   74 (170)
T d1p5qa1          17 KERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQ-KA------------QAL-------RLASHLNLAMCHLK   74 (170)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHH-HH------------HHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH--HhhhccccchHHHh-hh------------chh-------HHHHHHHHHHHHHh
Confidence            3344568888999999999988543  11111111100000 00            000       11246778888999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 036356          369 HGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLSAW  433 (462)
Q Consensus       369 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~  433 (462)
                      .|++++|+..+++..+  +.|+ ...|..+..+|...|++++|+..|++. .+.|+ ......+-...
T Consensus        75 ~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          75 LQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             hhhcccccchhhhhhh--ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999999998  6775 788888999999999999999999998 55563 44444444433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=2.8e-05  Score=56.91  Aligned_cols=25  Identities=12%  Similarity=-0.016  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          393 HYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       393 ~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      +|..+..+|.+.|++++|++.|++.
T Consensus        74 ~~~~Lg~~y~~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          74 YVFYLAVGNYRLKEYEKALKYVRGL   98 (122)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3344444444444444444444444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=7.5e-05  Score=54.58  Aligned_cols=94  Identities=10%  Similarity=-0.051  Sum_probs=76.5

Q ss_pred             HHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCCh---hHHHHHHHHhhhh
Q 036356           87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYA---EEAVKLFPKWMDY  163 (462)
Q Consensus        87 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~  163 (462)
                      ..+++.+...+++++|++.|+.....++                 .+..++..+..++.+.++.   ++|+++|++.   
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-----------------~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~---   62 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGS-----------------VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL---   62 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSC-----------------CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHH---
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCC-----------------CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHH---
Confidence            4577788888999999999999999986                 7888888899999876654   5699999996   


Q ss_pred             hhhhcCCCCC-chHHHHHHHHHHhcCCcccHHHHhhccCC
Q 036356          164 YIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD  202 (462)
Q Consensus       164 ~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  202 (462)
                        ......|+ ..++..+..+|.+.|++++|++.|++..+
T Consensus        63 --l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          63 --LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             --TTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --HhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence              44443343 34677799999999999999999998874

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00018  Score=53.11  Aligned_cols=59  Identities=14%  Similarity=0.118  Sum_probs=28.7

Q ss_pred             HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC
Q 036356          288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL  352 (462)
Q Consensus       288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~  352 (462)
                      +..+-..+.+.|++++|+..|.+.+.     .+ +.+...|..+..+|.+.|++++|...++.+.
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~-----~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKE-----LD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH-----HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            33444555556666666666655321     11 1234444445555555555555555554443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.34  E-value=0.00038  Score=54.61  Aligned_cols=98  Identities=5%  Similarity=-0.149  Sum_probs=77.0

Q ss_pred             hccCCChhhHHHHHHhh--cCCC-----------------------cchHHHHHHhhcCccchhhHHHHHHHHHHhcCCc
Q 036356           62 HLWSRTEWSAFGSFDGL--LSNE-----------------------ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL  116 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m--~~~~-----------------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~  116 (462)
                      ....|++++|.+.|...  ..+.                       ...+..+..++.+.|++++|...++++.+..+  
T Consensus        21 ~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P--   98 (179)
T d2ff4a2          21 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP--   98 (179)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC--
Confidence            67788999998888877  1111                       13467778888889999999999999998876  


Q ss_pred             chhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchH
Q 036356          117 ESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV  176 (462)
Q Consensus       117 ~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~  176 (462)
                                     -+...|..++.+|.+.|+.++|++.|++.......+.|+.|+..+
T Consensus        99 ---------------~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          99 ---------------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             ---------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             ---------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence                           688889999999999999999999999875433456788888665

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00053  Score=50.41  Aligned_cols=87  Identities=15%  Similarity=0.100  Sum_probs=56.1

Q ss_pred             HHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------HhHHHHH
Q 036356          329 TVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR--------HQHYARV  397 (462)
Q Consensus       329 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------~~~~~~l  397 (462)
                      -.+...|.+.|++++|...|++..+   .+..+|..+..+|.+.|++++|++.++++.+  +.|+        ..+|..+
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHH
Confidence            3455566677777777777776552   3455666677777777777777777777665  2222        2355666


Q ss_pred             HHHHHhcCChHHHHHHHHhC
Q 036356          398 VDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       398 i~~~~~~g~~~~A~~~~~~m  417 (462)
                      ...+...+++++|++.+++.
T Consensus        86 g~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHH
Confidence            66667777777777777664

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.32  E-value=0.0023  Score=48.54  Aligned_cols=115  Identities=10%  Similarity=0.044  Sum_probs=77.5

Q ss_pred             HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHH
Q 036356          288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG  367 (462)
Q Consensus       288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~  367 (462)
                      +..-...+.+.|++++|+..|.+.+.-. ......++........                    .....+|+.+..+|.
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~-~~~~~~~~~~~~~~~~--------------------~~~~~~~~Nla~~~~   78 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKK--------------------NIEISCNLNLATCYN   78 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHH--------------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cchhhhhhHHHHHhhh--------------------hHHHHHHhhHHHHHH
Confidence            3344456778899999999998754210 0011111111111000                    011235677888899


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 036356          368 LHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSV  425 (462)
Q Consensus       368 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~  425 (462)
                      +.|++++|++.+++..+  +.|+ ...|..+..++...|++++|+..|+.. .+.|+...
T Consensus        79 ~l~~~~~Al~~~~~al~--~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  136 (153)
T d2fbna1          79 KNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD  136 (153)
T ss_dssp             HTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             Hhcccchhhhhhhcccc--ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999888  6675 789999999999999999999999988 55665443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.29  E-value=0.007  Score=46.50  Aligned_cols=124  Identities=10%  Similarity=-0.059  Sum_probs=79.3

Q ss_pred             HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHh
Q 036356          289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL  368 (462)
Q Consensus       289 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~  368 (462)
                      .-....+.+.|++++|...|.+.+.  +......++....... .             .      -...+|+.+..+|.+
T Consensus        19 ~e~G~~~~~~~~~~~A~~~Y~~al~--~~~~~~~~~~~~~~~~-~-------------~------~~~~~~~Nla~~~~~   76 (168)
T d1kt1a1          19 KEKGTVYFKGGKYVQAVIQYGKIVS--WLEMEYGLSEKESKAS-E-------------S------FLLAAFLNLAMCYLK   76 (168)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHH-H-------------H------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH--HHHHhhccchhhhhhc-c-------------h------hHHHHHHhHHHHHHH
Confidence            3344568889999999999987553  2122221111110000 0             0      012245667788888


Q ss_pred             cCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHcc
Q 036356          369 HGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS-VRRALLSAWKIP  436 (462)
Q Consensus       369 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~~~  436 (462)
                      .|++++|+..++...+  +.|+ ...|..+..++...|++++|...|++. .+.|+.. .+..+-......
T Consensus        77 l~~~~~Ai~~~~~al~--l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          77 LREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             hhhcccchhhhhhhhh--cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999888  5565 778888888999999999999999888 5556443 444443333333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.17  E-value=0.0017  Score=50.77  Aligned_cols=116  Identities=10%  Similarity=0.063  Sum_probs=77.2

Q ss_pred             HHHHcCCChhHHHHHhhHHHHHHHHhhCC-CCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCC
Q 036356          293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL  371 (462)
Q Consensus       293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~  371 (462)
                      ......|++++|.+.|.+.+.  + ..|. -++.             ...+-+...-..+.......+..+...+...|+
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~--l-~rG~~l~~~-------------~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALR--E-WRGPVLDDL-------------RDFQFVEPFATALVEDKVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHT--T-CCSSTTGGG-------------TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHHHHHHh--h-CcccccccC-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            467788999999999988542  1 1111 1110             000001111111111223456778888999999


Q ss_pred             hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHHH
Q 036356          372 GEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM--------PIELRLSVR  426 (462)
Q Consensus       372 ~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~~~  426 (462)
                      +++|+..++.+.+  ..|. ...|..++.+|.+.|+.++|++.|+++        |+.|...+-
T Consensus        83 ~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          83 ASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             chHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            9999999999988  6775 678899999999999999999888875        788887653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.07  E-value=0.0019  Score=49.94  Aligned_cols=121  Identities=11%  Similarity=-0.019  Sum_probs=78.1

Q ss_pred             HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhc
Q 036356          290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH  369 (462)
Q Consensus       290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~  369 (462)
                      .....+.+.|++++|++.|.+.+.-.                 ............    ..+...+...|..+..+|.+.
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~~-----------------~~~~~~~~~~~~----~~~~~~~~~~~~nla~~~~~~   90 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRYV-----------------EGSRAAAEDADG----AKLQPVALSCVLNIGACKLKM   90 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH-----------------HHHHHHSCHHHH----GGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhh-----------------hhhhhhhhhHHH----HHhChhhHHHHHHHHHHHHhh
Confidence            34456778899999999998754210                 000000000000    011112344567778888889


Q ss_pred             CChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036356          370 GLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAW  433 (462)
Q Consensus       370 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~  433 (462)
                      |++++|+..+.+..+  +.|+ ...|..+..+|...|++++|++.|++. .+.| +......+....
T Consensus        91 ~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~  155 (169)
T d1ihga1          91 SDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  155 (169)
T ss_dssp             TCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999888  6676 778888889999999999999988887 4445 344455544443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.02  E-value=0.0011  Score=51.29  Aligned_cols=62  Identities=5%  Similarity=-0.066  Sum_probs=54.0

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          391 HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       391 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      ...|..+..++.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..+.+.++-
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            557778889999999999999999998 5556 5779999999999999999999999887653

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.98  E-value=0.017  Score=47.96  Aligned_cols=61  Identities=16%  Similarity=0.021  Sum_probs=39.6

Q ss_pred             eeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHh----cCCcccHHHHhhccCC
Q 036356          134 VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTLD  202 (462)
Q Consensus       134 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~  202 (462)
                      +..+..|-..+-+.|++++|++.|++-     .+.|   +...+..|-..|..    ..+...|...+.....
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kA-----a~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~   66 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKA-----CDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD   66 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence            344556666777889999999999885     4444   44455556666665    4456666666665443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.97  E-value=0.052  Score=44.76  Aligned_cols=58  Identities=14%  Similarity=-0.080  Sum_probs=34.4

Q ss_pred             chHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHh----CCChhHHHHHHHH
Q 036356           84 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAK----NGYAEEAVKLFPK  159 (462)
Q Consensus        84 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~  159 (462)
                      ..+..|...+-+.+++++|.+.|++..+.|.                   ...+..|-..|..    ..+...|...++.
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~-------------------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~   63 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLKE-------------------NSGCFNLGVLYYQGQGVEKNLKKAASFYAK   63 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHcCCCcchhHHHHHHhhcc
Confidence            3444555555566777888888777766554                   2334344444544    4566667666666


Q ss_pred             h
Q 036356          160 W  160 (462)
Q Consensus       160 m  160 (462)
                      -
T Consensus        64 a   64 (265)
T d1ouva_          64 A   64 (265)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.0026  Score=49.17  Aligned_cols=61  Identities=3%  Similarity=-0.255  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          392 QHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       392 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      .+|+-+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|+..+.+.+..
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            45677888899999999999999998 4455 7889999999999999999999999887653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.75  E-value=0.0062  Score=46.14  Aligned_cols=85  Identities=13%  Similarity=-0.075  Sum_probs=43.7

Q ss_pred             HHHhcCChHHHHHHHHHHHHC-CCCCC----------HhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC---
Q 036356          365 GYGLHGLGEEGWVLFHHIRKH-GIEPR----------HQHYARVVDLLARAGYSNHAFKFIMNM--------PIELR---  422 (462)
Q Consensus       365 ~~~~~~~~~~a~~~~~~m~~~-g~~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~---  422 (462)
                      .+...|++++|+..|++..+. .-.|+          ...|+.+..+|.+.|++++|.+.+++.        ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            344455566666555555542 00011          234555666666666666666555543        11111   


Q ss_pred             --HHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356          423 --LSVRRALLSAWKIPMQQWENMLQTIRG  449 (462)
Q Consensus       423 --~~~~~~l~~~~~~~~~~~~a~~~~~~~  449 (462)
                        ...+..+..+|...|++++|+..+.+.
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence              123455666666666666666666554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.63  E-value=0.0092  Score=44.97  Aligned_cols=61  Identities=8%  Similarity=-0.127  Sum_probs=52.5

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356          392 QHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGIDE  452 (462)
Q Consensus       392 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  452 (462)
                      .+|.-+..+|.+.|++++|++.++.. .+.| +...|..+..++...|++++|+..+.+.++-
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46677888999999999999999997 4445 6789999999999999999999998876654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.54  E-value=0.00052  Score=57.54  Aligned_cols=52  Identities=13%  Similarity=-0.071  Sum_probs=36.8

Q ss_pred             ccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcC
Q 036356           63 LWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL  114 (462)
Q Consensus        63 ~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~  114 (462)
                      .+.|++++|+..+++.   .+.|...+..+...++..|++++|.+.++...+..+
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P   61 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP   61 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            3567777777777777   444566777777777777777777777777776643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.001  Score=61.58  Aligned_cols=130  Identities=10%  Similarity=-0.106  Sum_probs=73.4

Q ss_pred             CCcccHHHHhhccCC---CCcchHHHHHHHHHhCc--hHHHHHHHhhhcC-CcchHHHHHHhhcCccchhhhHHHHHHHH
Q 036356          188 GSVDLAPMFFDRTLD---KDVVMRSAMIVGYGLHE--WSAFGSFDGLLSN-EENEYGTALDCSCDLEFLEQGKIVHGFMI  261 (462)
Q Consensus       188 g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~--~~a~~~~~~m~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  261 (462)
                      +.++.|+..+.+..+   ++...+..+...+.+.+  +.|...++....+ ....+..+...+...+++++|...|....
T Consensus       100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~  179 (497)
T d1ya0a1         100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAA  179 (497)
T ss_dssp             HHHHHHHHHHTC-------------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            444444444443322   22333333333444444  4444444443331 12456667778888999999999999998


Q ss_pred             HhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCC
Q 036356          262 KLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS  340 (462)
Q Consensus       262 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  340 (462)
                      +..                 +.+...|+.+...+...|+..+|...|.+.+     .. -.|...++..|...+.+..+
T Consensus       180 ~l~-----------------P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral-----~~-~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         180 QLV-----------------PSNGQPYNQLAILASSKGDHLTTIFYYCRSI-----AV-KFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHC-----------------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH-----SS-SBCCHHHHHHHHHHHHHHTT
T ss_pred             HHC-----------------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHH-----hC-CCCCHHHHHHHHHHHHHhhh
Confidence            874                 2456789999999999999999999998843     22 24567788888888876544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.36  E-value=0.0014  Score=54.88  Aligned_cols=112  Identities=13%  Similarity=-0.016  Sum_probs=64.1

Q ss_pred             hcCCcchHHHHhccCC--C-CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHH
Q 036356          337 KCGSVDLAPMFFDRTL--D-KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFK  412 (462)
Q Consensus       337 ~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~  412 (462)
                      +.|++++|...+++..  . .|...+..+...|+..|++++|.+.++...+  ..|+ ...+..+...+...+..+++..
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~a~~   85 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKDFAQ   85 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHHHHH
Confidence            4567777777776654  2 3556677777777777777777777777776  5666 3444444444444444444332


Q ss_pred             HHHhC--CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356          413 FIMNM--PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGI  450 (462)
Q Consensus       413 ~~~~m--~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  450 (462)
                      -....  ...| +...+......+...|+.++|...+.+..
T Consensus        86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~  126 (264)
T d1zbpa1          86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE  126 (264)
T ss_dssp             SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            22221  1122 23334444566667777777776665543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.33  E-value=0.0012  Score=49.70  Aligned_cols=110  Identities=10%  Similarity=-0.033  Sum_probs=68.7

Q ss_pred             HHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHH
Q 036356          295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE  374 (462)
Q Consensus       295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  374 (462)
                      |-+.+.+++|...|+..+     ... +.+...+..+..+|...++...+..                     ..+.+++
T Consensus         7 ~~r~~~fe~A~~~~e~al-----~~~-P~~~~~~~~~g~~l~~~~~~~~~~e---------------------~~~~~~~   59 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTY-----KSN-PLDADNLTRWGGVLLELSQFHSISD---------------------AKQMIQE   59 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHH-----HHC-TTCHHHHHHHHHHHHHHHHHSCHHH---------------------HHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHH-----hhC-CcchHHHHHHHHHHHHhhhhhhhhH---------------------HHHHHHH
Confidence            445556666777766632     111 2235555556666655555444433                     2234577


Q ss_pred             HHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCC-----------hHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 036356          375 GWVLFHHIRKHGIEPR-HQHYARVVDLLARAGY-----------SNHAFKFIMNM-PIELRLSVRRALLSAW  433 (462)
Q Consensus       375 a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~-----------~~~A~~~~~~m-~~~p~~~~~~~l~~~~  433 (462)
                      |...|++..+  +.|+ ..+|..+..+|...|+           +++|.+.|++. .+.|+...+..-+.-+
T Consensus        60 Ai~~~~kAl~--l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          60 AITKFEEALL--IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHH--hcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence            8888888887  7776 6778888887776553           57788888877 6678777666555444

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.23  E-value=0.019  Score=43.30  Aligned_cols=67  Identities=6%  Similarity=-0.096  Sum_probs=44.5

Q ss_pred             HHhhcCccchhhhHHHHHHHHHhCCC-cchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356          241 LDCSCDLEFLEQGKIVHGFMIKLGLE-LESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD  313 (462)
Q Consensus       241 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  313 (462)
                      .....+.|++++|+..|++.++..-. |+......      .......|+.+..+|.+.|++++|...+.+.+.
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~------~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~   83 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDH------AGFDAFCHAGLAEALAGLRSFDEALHSADKALH   83 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhccc------chhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence            34455779999999999999875322 00000000      000145688899999999999999999988654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.10  E-value=0.0049  Score=47.41  Aligned_cols=17  Identities=6%  Similarity=-0.079  Sum_probs=14.6

Q ss_pred             hccCCChhhHHHHHHhh
Q 036356           62 HLWSRTEWSAFGSFDGL   78 (462)
Q Consensus        62 ~~~~~~~~~A~~~~~~m   78 (462)
                      +.+.|++.+|+..|...
T Consensus        25 ~~~~~~~~~A~~~Y~~a   41 (168)
T d1kt1a1          25 YFKGGKYVQAVIQYGKI   41 (168)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHH
Confidence            67889999999998876

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0063  Score=56.14  Aligned_cols=109  Identities=9%  Similarity=-0.069  Sum_probs=49.2

Q ss_pred             hhHHHHHHHHHHhcCCcchHHHHhccCCCCC-ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHH
Q 036356          325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD-VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLA  402 (462)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~  402 (462)
                      ...+..+...+.+.|+.+.|...++...+++ ..++..+...+...|++++|...+++..+  +.|+ ...|+.|...+.
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~  197 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILAS  197 (497)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHH
Confidence            3444555555566666666665554433222 13455556666666666666666666666  5565 456666666666


Q ss_pred             hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHc
Q 036356          403 RAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKI  435 (462)
Q Consensus       403 ~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~  435 (462)
                      ..|+..+|...|.+.  -..|-...+..|...+.+
T Consensus       198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            666666666666655  223444555555555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.012  Score=40.04  Aligned_cols=62  Identities=3%  Similarity=-0.128  Sum_probs=36.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHC-----CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036356          361 AMTVGYGLHGLGEEGWVLFHHIRKH-----GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR  422 (462)
Q Consensus       361 ~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~  422 (462)
                      .+...+.+.|++++|...|++..+.     ...++ ..++..|..++.+.|++++|+..+++. .+.|+
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~   78 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence            3455566666666666666665543     11122 345666677777777777777777766 44454

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.13  E-value=0.0074  Score=45.04  Aligned_cols=98  Identities=5%  Similarity=-0.055  Sum_probs=69.3

Q ss_pred             ccCCChhhHHHHHHhh--cCC-CcchHHHHHHhhcCc----------cchhhHHHHHHHHHHhcCCcchhHHHHHhhhcC
Q 036356           63 LWSRTEWSAFGSFDGL--LSN-EENEYGTALDCSCDL----------EFLEQGKIVHGFMIKLGLELESDLLISLTAVCR  129 (462)
Q Consensus        63 ~~~~~~~~A~~~~~~m--~~~-~~~~~~~ll~~~~~~----------~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~  129 (462)
                      -+.+.+++|+..|+..  ..| +..++..+..++...          +.+++|...|++..+..+               
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P---------------   72 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP---------------   72 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT---------------
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc---------------
Confidence            3456789999999999  444 566777777777643          445789999999998875               


Q ss_pred             CCCCeeeHHHHHHHHHhCCC-----------hhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHH
Q 036356          130 YQPNVTLRNAMISGYAKNGY-----------AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY  184 (462)
Q Consensus       130 ~~p~~~~~~~li~~~~~~g~-----------~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~  184 (462)
                        .+..+|..+..+|...|+           +++|.+.|++.       ..+.|+...|..-+..+
T Consensus        73 --~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~ka-------l~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          73 --KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQA-------VDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             --TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-------HHHCTTCHHHHHHHHHH
T ss_pred             --hhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcc-------cccCCCHHHHHHHHHHH
Confidence              677788888888876543           56677777663       34567766665555444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.044  Score=37.05  Aligned_cols=31  Identities=10%  Similarity=0.194  Sum_probs=19.6

Q ss_pred             chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036356          358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR  390 (462)
Q Consensus       358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  390 (462)
                      +++.|..+|.+.|++++|.+.+++..+  +.|+
T Consensus        48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~   78 (95)
T d1tjca_          48 VLDYLSYAVYQQGDLDKALLLTKKLLE--LDPE   78 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred             HHHHHhhHHHhcCChHHHHHHHHHHHH--hCcC
Confidence            345566666666666666666666666  5565

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=92.21  E-value=0.46  Score=33.20  Aligned_cols=135  Identities=13%  Similarity=0.105  Sum_probs=88.2

Q ss_pred             HHHHH--HHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCC-C---cchHHHHH
Q 036356          139 AMISG--YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-D---VVMRSAMI  212 (462)
Q Consensus       139 ~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~---~~~~~~li  212 (462)
                      .||.+  +.-.|.+++..++..+.     ..   ..+..-||-+|--....-+-+...++++.+-+- |   ....-.++
T Consensus         5 kLmeAKk~ildG~ve~Gveii~k~-----~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv   76 (161)
T d1wy6a1           5 KLMDAKKFLLDGYIDEGVKIVLEI-----TK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVV   76 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH-----HH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHH
T ss_pred             HHHHHHHHHHhhhHHhHHHHHHHH-----cc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHH
Confidence            34544  66678888888888886     21   123455666666666666666777776655421 1   11233445


Q ss_pred             HHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHH
Q 036356          213 VGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI  292 (462)
Q Consensus       213 ~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li  292 (462)
                      .++...+            .+...+...+..+.+.|.-+.-.+++..+.+.+                 ++++...-.+.
T Consensus        77 ~C~~~~n------------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-----------------~i~~~~llkia  127 (161)
T d1wy6a1          77 ECGVINN------------TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-----------------EVSASILVAIA  127 (161)
T ss_dssp             HHHHHTT------------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-----------------CSCHHHHHHHH
T ss_pred             HHHHHhc------------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----------------CCCHHHHHHHH
Confidence            5554443            445556667777788888888888888877755                 47777777888


Q ss_pred             HHHHcCCChhHHHHHhhH
Q 036356          293 SGYAKNGYAEEAVKLFPK  310 (462)
Q Consensus       293 ~~~~~~~~~~~a~~~~~~  310 (462)
                      .+|.+.|...++-+++.+
T Consensus       128 ~A~kkig~~re~nell~~  145 (161)
T d1wy6a1         128 NALRRVGDERDATTLLIE  145 (161)
T ss_dssp             HHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhcchhhHHHHHHH
Confidence            888888888888888877

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=89.27  E-value=0.5  Score=33.76  Aligned_cols=105  Identities=12%  Similarity=-0.163  Sum_probs=69.7

Q ss_pred             CCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh-hccCCChhhHHHHHHhh-cCCCcchHHHHHHhhc----Ccc
Q 036356           24 PSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY-HLWSRTEWSAFGSFDGL-LSNEENEYGTALDCSC----DLE   97 (462)
Q Consensus        24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~m-~~~~~~~~~~ll~~~~----~~~   97 (462)
                      .|.++|...|++..+.|.             ...+..+ .....+.++|+..++.. ..-+..++..|-..+.    -..
T Consensus         7 kd~~~A~~~~~kaa~~g~-------------~~a~~~l~~~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~   73 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNE-------------MFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKK   73 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTC-------------TTHHHHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC
T ss_pred             cCHHHHHHHHHHHHHCCC-------------hhhhhhhccccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccch
Confidence            356778888888877763             3333334 44556788999999888 4445555555555443    245


Q ss_pred             chhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHh----CCChhHHHHHHHHh
Q 036356           98 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAK----NGYAEEAVKLFPKW  160 (462)
Q Consensus        98 ~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m  160 (462)
                      +.++|.++|++..+.|.                 |  .....|-..|..    ..+.++|.++|+.-
T Consensus        74 d~~~A~~~~~~aa~~g~-----------------~--~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A  121 (133)
T d1klxa_          74 DLRKAAQYYSKACGLND-----------------Q--DGCLILGYKQYAGKGVVKNEKQAVKTFEKA  121 (133)
T ss_dssp             CHHHHHHHHHHHHHTTC-----------------H--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHhhhhccCc-----------------c--hHHHHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence            78899999999988775                 3  334445444444    45788888888774

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=84.03  E-value=2.7  Score=29.57  Aligned_cols=11  Identities=18%  Similarity=0.362  Sum_probs=7.8

Q ss_pred             ChhHHHHHhhH
Q 036356          300 YAEEAVKLFPK  310 (462)
Q Consensus       300 ~~~~a~~~~~~  310 (462)
                      ++++|.++|.+
T Consensus         8 d~~~A~~~~~k   18 (133)
T d1klxa_           8 DLKKAIQYYVK   18 (133)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            56677777776

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=82.30  E-value=6  Score=27.45  Aligned_cols=56  Identities=14%  Similarity=0.074  Sum_probs=33.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356          361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM  417 (462)
Q Consensus       361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  417 (462)
                      .-+..+..+|+-+.-.++.+++.+ +-.|++...-.+..+|.+.|...++.+++.+.
T Consensus        91 lALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~A  146 (161)
T d1wy6a1          91 KALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA  146 (161)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            345555666666666666666555 34455566666666666666666666665554

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.06  E-value=3.1  Score=27.32  Aligned_cols=46  Identities=13%  Similarity=0.149  Sum_probs=29.8

Q ss_pred             CCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHH
Q 036356          131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID  182 (462)
Q Consensus       131 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~  182 (462)
                      .|++.+..+-+.+|.+-+++..|+++|+..      +....++...|.-++.
T Consensus        38 VPeP~Ii~aALrAcRRvND~alAVR~lE~v------K~K~~~~k~~y~yilq   83 (105)
T d1v54e_          38 VPEPKIIDAALRACRRLNDFASAVRILEVV------KDKAGPHKEIYPYVIQ   83 (105)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHTTTCTTHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHhcCcHHHHHHHHH
Confidence            677777777777777777777777777774      2333333445554443