Citrus Sinensis ID: 036437

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-
MSSAADQQHKLLSPKSNGAKLLFKDIEVPPRKLLLQNKKSHHHHHHHHHHQDICSGSPRSGSGSGSDSASYLFYPDQQEMNILHNKFLPFNNTDADSDPDSDPYASDHFRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILPEISSQYSSSPSSVNNNNQKISSHCCMYCHHHSVNSSPTSTLLGNMSHLSRSPSLSPPLSPVKHGLISPISRYSATTPVPADRLSKFSNSSEMSMSYKDVLNELMTSMDAISFNEVSSPMSLTPSNDVNACPWIDVSSFNVEDQQQFVLSPSTPSPSAGSIMNPFAAHHDYFSNKSFLDDDQKMINYHNHIHNNSNGSCQLASDTPDPDLGWVNELLT
cccHHHHHccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccEEEccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccHHHHHcccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccc
cccccHHHHcccccccccccHHHHccccccHHHHHcccccccccccccHHHHHcccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccEEEEEEEEEEccccccccccccccccccccHccccccccccccccccccccccccccccccHHHcccEHHcccHHHHcccccccccccccEEEEEEcccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccHHHcccccHHHHHHHHHHHHcccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHccc
mssaadqqhkllspksngakllfkdievpprklllqnkkshhhhhhhhhhqdicsgsprsgsgsgsdsasylfypdqqemnilhnkflpfnntdadsdpdsdpyasdhfrmYEFKIrrctrsrshdwtdcpfahpsekarrrdprryhysgavcseyrrgggcslgddcefAHGVfecwlhpsryrteackdgknckrkvcffahsprqlrilpeissqyssspssvnnnnqkisshccmychhhsvnssptstllgnmshlsrspslspplspvkhglispisrysattpvpadrlskfsnssemsMSYKDVLNELMTSMDAisfnevsspmsltpsndvnacpwidvssfnvedqqqfvlspstpspsagsimnpfaahhdyfsnksfldddqkmINYHnhihnnsngscqlasdtpdpdlgwvnellt
mssaadqqhkllspksngakllfKDIEVPPRKLLLQNKKSHHHHHHHHHHQDICSGSPRSGSGSGSDSASYLFYPDQQEMNILHNKFLPFNNTDADSDPDSDPYASDHFRMYEFKIRRctrsrshdwtdcpfahpsekarrrdprryHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILPEISSQYSSSPSSVNNNNQKISSHCCMYCHHHSVNSSPTSTLLGNMSHLSRSPSLSPPLSPVKHGLISPISrysattpvpadrlskfsnssemSMSYKDVLNELMTSMDAISFNEVSSPMSLTPSNDVNACPWIDVSSFNVEDQQQFVLSPSTPSPSAGSIMNPFAAHHDYFSNKSFLDDDQKMINYHNHIHNNSNGSCQLASDTPDPDLGWVNELLT
MSSAADQQHKLLSPKSNGAKLLFKDIEVPPRKLLLQNKKShhhhhhhhhhQDICsgsprsgsgsgsdsasYLFYPDQQEMNILHNKFLPFNNTdadsdpdsdpyasdHFRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILPEIssqyssspssvnnnnQKIsshccmychhhsVNSSPTSTLLGNMshlsrspslspplspVKHGLISPISRYSATTPVPADRLskfsnssemsmsYKDVLNELMTSMDAISFNEVSSPMSLTPSNDVNACPWIDVSSFNVEDQQQFVLSPSTPSPSAGSIMNPFAAHHDYFSNKSFLDDDQKMinyhnhihnnsnGSCQLASDTPDPDLGWVNELLT
**********************************************************************YLFYPDQQEMNILHNKFLPF*****************HFRMYEFKIRRCTRSRSHDWTDCPF*************RYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRIL**********************SHCCMYCHHH***********************************************************************************************VNACPWIDVSSFNV*************************AHHDYFSNKSFLDDDQKMINYHNHI***************************
*********************************************************************************************************SDHFRMYEFKIRRCTRSRSHDWTDC***H******RRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILPE**************************************************************************************************************************************************************************************************************DLGWVNELLT
**********LLSPKSNGAKLLFKDIEVPPRKLLLQ*******************************SASYLFYPDQQEMNILHNKFLPFNNTDADSDPDSDPYASDHFRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILPEISS***********NNQKISSHCCMYCHHHSVNSSPTSTLLGN****************VKHGLISPISRYSATTPVPADRLSKFSNSSEMSMSYKDVLNELMTSMDAISFNEVSSPMSLTPSNDVNACPWIDVSSFNVEDQQ************AGSIMNPFAAHHDYFSNKSFLDDDQKMINYHNHIHNNSNGSCQLASDTPDPDLGWVNELLT
************SPKSNGAKLLFKDIEVPPRKLLLQNK***************C*****************LFYPDQQEMNILHNKFLPFNNTDADSDPDSDPYASDHFRMYEFKIRRCTRSRSHDWTDCPFAHPSEK*RRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILPEI*******************************************************************************RLSKFSNSSEMSMSYKDVLNELMTSM**********************************DQQQFVLSPSTPSPSAGSIMNPFAAHHDYFSNKS******************************************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSAADQQHKLLSPKSNGAKLLFKDIEVPPRKLLLQNKKSHHHHHHHHHHQDICSGSPRSGSGSGSDSASYLFYPDQQEMNILHNKFLPFNNTDADSDPDSDPYASDHFRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILPEISSQYSSSPSSVNNNNQKISSHCCMYCHHHSVNSSPTSTLLGNMSHLSRSPSLSPPLSPVKHGLISPISRYSATTPVPADRLSKFSNSSEMSMSYKDVLNELMTSMDAISFNEVSSPMSLTPSNDVNACPWIDVSSFNVEDQQQFVLSPSTPSPSAGSIMNPFAAHHDYFSNKSFLDDDQKMINYHNHIHNNSNGSCQLASDTPDPDLGWVNELLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query431 2.2.26 [Sep-21-2011]
Q9ZWA1393 Zinc finger CCCH domain-c yes no 0.846 0.928 0.476 1e-78
Q9FKW2381 Zinc finger CCCH domain-c no no 0.689 0.779 0.446 9e-63
O82199359 Zinc finger CCCH domain-c no no 0.306 0.367 0.657 4e-53
Q9M0G2356 Zinc finger CCCH domain-c no no 0.406 0.491 0.507 7e-52
Q9FU27386 Zinc finger CCCH domain-c yes no 0.345 0.386 0.597 1e-51
Q6L4N4402 Zinc finger CCCH domain-c no no 0.278 0.298 0.719 2e-51
O82307315 Zinc finger CCCH domain-c no no 0.501 0.685 0.442 2e-49
Q9LUZ4607 Zinc finger CCCH domain-c no no 0.431 0.306 0.462 9e-45
Q2QPW2 619 Zinc finger CCCH domain-c no no 0.255 0.177 0.663 9e-45
P93755 716 Zinc finger CCCH domain-c no no 0.285 0.171 0.603 5e-44
>sp|Q9ZWA1|C3H2_ARATH Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana GN=At1g03790 PE=2 SV=1 Back     alignment and function desciption
 Score =  294 bits (752), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 200/420 (47%), Positives = 251/420 (59%), Gaps = 55/420 (13%)

Query: 26  IEVPPRKLLLQNKKSHHHHHHHHHHQDICSGSPRSGSGSGSDSASYLFYPDQQEMNILHN 85
           +E+PPRKLLL +K                    R  + + S+  +     D ++ N  + 
Sbjct: 15  VEIPPRKLLLSSKSFPSDSSSPRSP--------RKHNWNKSNKITSEHEEDNEDNNRENK 66

Query: 86  KFLPFNNTDADSDPDSDPYASDHFRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPR 145
           ++      D+DSD   DPYASDHFRM+EFKIRRCTRSRSHDWTDCPFAHP EKARRRDPR
Sbjct: 67  EYC----YDSDSD---DPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPR 119

Query: 146 RYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAH 205
           R+ YSG VC E+RRGG CS GDDCEFAHGVFECWLHP RYRTEACKDGK+CKRKVCFFAH
Sbjct: 120 RFQYSGEVCPEFRRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAH 179

Query: 206 SPRQLRIL-PEISSQYSSSPSSVNNNNQKISSHCCMYCHHHSVNSSPTSTLLGNMSHLSR 264
           SPRQLR+L PE  S  S+SPS    N       CC++C     +SSPTSTLLGN+SHLSR
Sbjct: 180 SPRQLRVLPPENVSGVSASPSPAAKN------PCCLFC-----SSSPTSTLLGNLSHLSR 228

Query: 265 SPSLSPPLSPVKHGLISPISRYSATTPVPADRLSKFSNSSEMSMSYKDVLNELMTSMDAI 324
           SPSLSPP+SP      +  SR            +  + ++  SM+YKDVL+EL+ S+D++
Sbjct: 229 SPSLSPPMSPANKA--AAFSRLRNRA-----ASAVSAAAAAGSMNYKDVLSELVNSLDSM 281

Query: 325 SFNE---------VSSPMSLTPSNDVNACPW----IDVSSFNVEDQQQFVLSPSTPSPSA 371
           S  E         V++P+S   +   ++C      + +         QF LSPSTPS   
Sbjct: 282 SLAEALQASSSSPVTTPVSAAAAAFASSCGLSNQRLHLQQQQPSSPLQFALSPSTPSYLT 341

Query: 372 GSIMNPFAAHHDYFSNKSFLDDDQKMINYHNHIHNNSNGSCQLASDTPDPDLGWVNELLT 431
            S    F +  D+   +  ++D   M     +  N  +GSC       DPDLGWVN+LLT
Sbjct: 342 NSPQANFFS-DDFTPRRRQMNDFTAMTAVRENT-NIEDGSCG------DPDLGWVNDLLT 393
Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FKW2|C3H61_ARATH Zinc finger CCCH domain-containing protein 61 OS=Arabidopsis thaliana GN=At5g44260 PE=2 SV=1 Back     alignment and function description
>sp|O82199|C3H20_ARATH Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1 Back     alignment and function description
>sp|Q9M0G2|C3H49_ARATH Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1 Back     alignment and function description
>sp|Q9FU27|C3H2_ORYSJ Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=Os01g0192000 PE=2 SV=1 Back     alignment and function description
>sp|Q6L4N4|C3H35_ORYSJ Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN=Os05g0195200 PE=2 SV=1 Back     alignment and function description
>sp|O82307|C3H23_ARATH Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g25900 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUZ4|C3H66_ARATH Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1 Back     alignment and function description
>sp|Q2QPW2|C3H67_ORYSJ Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2 SV=1 Back     alignment and function description
>sp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query431
224133466382 predicted protein [Populus trichocarpa] 0.837 0.945 0.544 9e-99
224092910383 predicted protein [Populus trichocarpa] 0.837 0.942 0.538 1e-91
356543849392 PREDICTED: zinc finger CCCH domain-conta 0.809 0.890 0.451 2e-84
225446424360 PREDICTED: zinc finger CCCH domain-conta 0.823 0.986 0.488 6e-84
60460512339 putative CCCH-type zinc finger transcrip 0.779 0.991 0.479 4e-80
302398715439 C3HL domain class transcription factor [ 0.902 0.886 0.446 4e-79
449438127388 PREDICTED: zinc finger CCCH domain-conta 0.714 0.793 0.504 5e-78
356546991391 PREDICTED: zinc finger CCCH domain-conta 0.809 0.892 0.424 2e-77
26449538393 unknown protein [Arabidopsis thaliana] g 0.846 0.928 0.476 6e-77
15219557393 zinc finger CCCH domain-containing prote 0.846 0.928 0.476 7e-77
>gi|224133466|ref|XP_002328049.1| predicted protein [Populus trichocarpa] gi|222837458|gb|EEE75837.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  367 bits (941), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 245/450 (54%), Positives = 293/450 (65%), Gaps = 89/450 (19%)

Query: 1   MSSAADQQHK------LLSPKSNGAKLLFKDIEVPPRKLLLQNKKSHHHHHHHHHHQDIC 54
           MS+   +QHK      LLSPK       F+D+E+ P KLL +             HQ+  
Sbjct: 1   MSTICAEQHKPYTPHQLLSPKRP-----FRDLEILPGKLLTKKT-----------HQETL 44

Query: 55  SGSPRSGSGSGSDSASYLFYPDQQEMNILHNKFLPFNNTDADS--DPDSDPYASDHFRMY 112
             SP                    E N+   +FLP+N+   +   D + DPY+SDHFRMY
Sbjct: 45  DMSP-------------------YETNL--QRFLPYNDYSNEKVLDGELDPYSSDHFRMY 83

Query: 113 EFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFA 172
           EFK+RRCTRSRSHDWTDCPFAHP EKARRRDPRR+HYSG VC E++RGG CS G++CEF+
Sbjct: 84  EFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGIVCPEFKRGG-CSRGENCEFS 142

Query: 173 HGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILPEISSQYSSSPSSVNNNNQ 232
           HGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILPE+SS+  S  S  ++ N 
Sbjct: 143 HGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILPEVSSRNKSLASPCSSLNH 202

Query: 233 KISSHCCMYCHHHSVNSSPTSTLLGNMSHL--SRSPSLSPPLSPVKHGLI---SPISRYS 287
              SHCC+ C  HS+ SSPTSTLLG MSH+    SPSLSPPLSPVKH  +   SPISRY+
Sbjct: 203 ---SHCCVVC--HSMTSSPTSTLLG-MSHMSPPLSPSLSPPLSPVKHQSLSGFSPISRYN 256

Query: 288 ATTPVPADRLSKFSNSSEMSMSYKDVLNELMTSMDAISFNE---VSSPMSLTPSNDVNA- 343
            T       LSKF       +SYKDVL+ELM+S++A++FNE   VSSPMSL+ +++ N  
Sbjct: 257 ET-------LSKFRAG---VVSYKDVLSELMSSLEAMNFNEGASVSSPMSLSTNHNRNVN 306

Query: 344 --CPW-IDVSSFNVEDQQQFVLSPSTPSPSAGSIMNPFAAHHDYFSNKSFLDDDQKMINY 400
              PW IDV SF+ EDQ QF+LSPSTP+PS+         + D  SNK    DD+  IN 
Sbjct: 307 STTPWNIDV-SFSGEDQPQFILSPSTPTPSSKFF------NGDCSSNKGLFVDDK--IND 357

Query: 401 HNHIHNNSNGSCQLASDTPDPDLGWVNELL 430
           HN+I     G   LA  T DPDLGWVNELL
Sbjct: 358 HNNI-----GDGGLAC-TSDPDLGWVNELL 381

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224092910|ref|XP_002309749.1| predicted protein [Populus trichocarpa] gi|222852652|gb|EEE90199.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356543849|ref|XP_003540372.1| PREDICTED: zinc finger CCCH domain-containing protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|225446424|ref|XP_002274948.1| PREDICTED: zinc finger CCCH domain-containing protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|60460512|gb|AAX20386.1| putative CCCH-type zinc finger transcription factor [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|302398715|gb|ADL36652.1| C3HL domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|449438127|ref|XP_004136841.1| PREDICTED: zinc finger CCCH domain-containing protein 2-like [Cucumis sativus] gi|449478965|ref|XP_004155466.1| PREDICTED: zinc finger CCCH domain-containing protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356546991|ref|XP_003541902.1| PREDICTED: zinc finger CCCH domain-containing protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|26449538|dbj|BAC41895.1| unknown protein [Arabidopsis thaliana] gi|28950965|gb|AAO63406.1| At1g03790 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15219557|ref|NP_171875.1| zinc finger CCCH domain-containing protein 2 [Arabidopsis thaliana] gi|75268098|sp|Q9ZWA1.1|C3H2_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 2; Short=AtC3H2; AltName: Full=Protein SOMNUS; Short=SOM gi|4204308|gb|AAD10689.1| Hypothetical protein [Arabidopsis thaliana] gi|332189493|gb|AEE27614.1| zinc finger CCCH domain-containing protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query431
TAIR|locus:2158685381 TZF5 "Tandem CCCH Zinc Finger 0.248 0.280 0.859 7.6e-70
TAIR|locus:2024112393 SOM "SOMNUS" [Arabidopsis thal 0.707 0.776 0.444 1.4e-66
TAIR|locus:2052005359 OZF1 "Oxidation-related Zinc F 0.245 0.295 0.738 5.4e-54
TAIR|locus:2118209356 OZF2 "oxidation-related zinc f 0.243 0.294 0.754 1.8e-53
UNIPROTKB|Q9FU27386 LOC_Os01g09620 "Zinc finger CC 0.243 0.272 0.745 3.3e-47
TAIR|locus:2043565315 ATCTH [Arabidopsis thaliana (t 0.243 0.333 0.726 3.8e-46
TAIR|locus:2064647 716 OXS2 "OXIDATIVE STRESS 2" [Ara 0.241 0.145 0.647 2.2e-43
TAIR|locus:2178843607 AT5G58620 [Arabidopsis thalian 0.241 0.171 0.666 1.2e-40
TAIR|locus:2183339245 PEI1 [Arabidopsis thaliana (ta 0.236 0.416 0.669 3.4e-38
TAIR|locus:2182250 706 AT5G12850 [Arabidopsis thalian 0.241 0.147 0.628 7.1e-38
TAIR|locus:2158685 TZF5 "Tandem CCCH Zinc Finger protein 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 552 (199.4 bits), Expect = 7.6e-70, Sum P(4) = 7.6e-70
 Identities = 92/107 (85%), Positives = 99/107 (92%)

Query:   108 HFRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGD 167
             HFRMYEFKIRRCTRSRSHDWTDCPF+HP EKARRRDPRR+HY+G VC E+ R G CS GD
Sbjct:    60 HFRMYEFKIRRCTRSRSHDWTDCPFSHPGEKARRRDPRRFHYTGEVCPEFSRHGDCSRGD 119

Query:   168 DCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILP 214
             +C FAHGVFECWLHPSRYRTEACKDGK+CKRKVCFFAHSPRQLR+LP
Sbjct:   120 ECGFAHGVFECWLHPSRYRTEACKDGKHCKRKVCFFAHSPRQLRVLP 166
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2024112 SOM "SOMNUS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052005 OZF1 "Oxidation-related Zinc Finger 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118209 OZF2 "oxidation-related zinc finger 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FU27 LOC_Os01g09620 "Zinc finger CCCH domain-containing protein 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2043565 ATCTH [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064647 OXS2 "OXIDATIVE STRESS 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178843 AT5G58620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183339 PEI1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182250 AT5G12850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZWA1C3H2_ARATHNo assigned EC number0.47610.84680.9287yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 0.003
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information 
 Score = 34.5 bits (80), Expect = 0.003
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 149 YSGAVCSEYRRGGGCSLGDDCEFAHGV 175
           Y   +C  + R G C  GD C+FAHG 
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 431
KOG1595528 consensus CCCH-type Zn-finger protein [General fun 100.0
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 99.21
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 98.47
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 98.15
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 97.84
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 97.81
KOG1595528 consensus CCCH-type Zn-finger protein [General fun 97.47
smart0035627 ZnF_C3H1 zinc finger. 97.21
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 97.03
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 95.55
KOG1040325 consensus Polyadenylation factor I complex, subuni 94.7
KOG1040325 consensus Polyadenylation factor I complex, subuni 94.34
smart0035627 ZnF_C3H1 zinc finger. 92.51
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 92.37
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 92.11
KOG2333 614 consensus Uncharacterized conserved protein [Gener 91.32
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 90.82
KOG3702681 consensus Nuclear polyadenylated RNA binding prote 89.93
KOG4791 667 consensus Uncharacterized conserved protein [Funct 89.26
COG5252299 Uncharacterized conserved protein, contains CCCH-t 89.19
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 87.65
KOG2333 614 consensus Uncharacterized conserved protein [Gener 85.91
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 85.62
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 83.09
COG5152259 Uncharacterized conserved protein, contains RING a 82.9
KOG2185486 consensus Predicted RNA-processing protein, contai 82.49
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 82.22
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-53  Score=435.73  Aligned_cols=325  Identities=44%  Similarity=0.713  Sum_probs=213.5

Q ss_pred             CCCCCCCCCccccCCchhHHHHHHhcccCCCCCCCCCCCCCCCCCCCeeeeecccccccCCCCCCCCCCCCCCCCccccc
Q 036437           61 GSGSGSDSASYLFYPDQQEMNILHNKFLPFNNTDADSDPDSDPYASDHFRMYEFKIRRCTRSRSHDWTDCPFAHPSEKAR  140 (431)
Q Consensus        61 g~g~~~~~~~~~~yp~~~~~~a~l~~~Lp~N~~~~~~~~~~d~y~~DeFrM~~FKTr~Cpr~~cHd~t~CPFAHn~EkdR  140 (431)
                      ++|.++..      +++...+...  ..+.+..+.++.   +.|.+|+||||.|||++|+|.++|||++|||||++||+|
T Consensus       157 ~~~~~~~e------~~~~~~~~~~--~y~~Dp~~pdi~---~~ys~DeFrMy~fKir~C~R~~shDwteCPf~HpgEkAR  225 (528)
T KOG1595|consen  157 GSGLPDDE------PEVESKLDVT--EYPEDPSWPDIN---GIYSSDEFRMYSFKIRRCSRPRSHDWTECPFAHPGEKAR  225 (528)
T ss_pred             ccCccCCC------cccccccccc--cccCCCCccccc---ccccccceEEEeeeecccCCccCCCcccCCccCCCcccc
Confidence            56666655      4433333332  445555554322   799999999999999999999999999999999999999


Q ss_pred             cCCCCCCCccccccccccCCCCCCCCCCCCCCcCccccccCccccccccCcCCCCCCCCCCCcCCCccccCCCccccCCC
Q 036437          141 RRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILPEISSQY  220 (431)
Q Consensus       141 RRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELryHP~~YKTk~Ck~~~nC~r~~C~FAHgeeELR~~p~~~~~~  220 (431)
                      ||+|++|+|+.++||.|++| .|++||.|+||||++|+|+||.+|||++||++++|+|.+|+|||.++|||.++..   +
T Consensus       226 RRDPRkyhYs~tpCPefrkG-~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg~~C~RrvCfFAH~~eqLR~l~~s---~  301 (528)
T KOG1595|consen  226 RRDPRKYHYSSTPCPEFRKG-SCERGDSCEYAHGVFECWLHPARYRTRKCKDGGYCPRRVCFFAHSPEQLRPLPPS---T  301 (528)
T ss_pred             cCCcccccccCccCcccccC-CCCCCCccccccceehhhcCHHHhccccccCCCCCccceEeeecChHHhcccCCC---C
Confidence            99999999999999999998 9999999999999999999999999999999999999999999999999999852   3


Q ss_pred             CCCCCCCCcchhhhccccccccccccccCCCCccccCCCCCCCCCCCCCCCCCCccCCCCCCccccCC-------CCCCC
Q 036437          221 SSSPSSVNNNNQKISSHCCMYCHHHSVNSSPTSTLLGNMSHLSRSPSLSPPLSPVKHGLISPISRYSA-------TTPVP  293 (431)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ssptstl~~~~~~~~~~ps~sPp~sp~~~~~~~~~~r~~~-------~~~~~  293 (431)
                      ++..++++.                ...+||+...+. +.+.++++ .+||+||...+..+|+...+-       .++|.
T Consensus       302 ~s~~~~sp~----------------~s~~sp~~~~~~-~~~~s~~~-~~~p~sp~~~~~~~~~~~~~s~~~~~~~~~~p~  363 (528)
T KOG1595|consen  302 GSDRPSSPS----------------SSSASPMMASLR-SLPFSPSP-GSPPLSPSANGVSSPIASGGSRSLNSNSPSSPA  363 (528)
T ss_pred             CCCCCCCcc----------------cccCCCCccccc-cCCCCCCC-CCCCCCccccccccccccccccccCCCCCCCcc
Confidence            333333210                001133333332 12333322 566677766554333222110       01111


Q ss_pred             c-----cccccccc----CccccccHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCC--CCc---eecccC-cc--cc
Q 036437          294 A-----DRLSKFSN----SSEMSMSYKDVLNELMTSMDAISFNEVSSPMSLTPSNDVNA--CPW---IDVSSF-NV--ED  356 (431)
Q Consensus       294 ~-----~~~~~~~~----~~~~~~~y~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~-~~--~~  356 (431)
                      +     .+|.....    ...+.|.|. +|+|+.++......+++.++.+..+..-+.+  ..|   ++.+.- ..  +.
T Consensus       364 ~~~~~~Srl~s~~~a~~i~~~~~~~~~-~l~~~f~s~~sssl~~~~~~~~~~~tsP~~~~~~~~~~~~e~s~~~~~~~~~  442 (528)
T KOG1595|consen  364 APLRSFSRLSSSLSAADISMSSPMNLG-NLSELFSSPDSSSLNPQLQVLSSAPTSPVFTDTASFGSSVESSPAMEGRSQV  442 (528)
T ss_pred             ccccccccccccccccccccccccccc-cchhhhcCccccccchhhhhcccCCcCCcCCcccccccccccchhhhccccc
Confidence            1     11100000    112333344 7899999999998888755443322222222  234   333211 11  11


Q ss_pred             cc----ceeecCC-CCCC-------CCCCCCCCCccCCCccCCCCccchhHHhhhh----ccccccCCCCceeccCCCCC
Q 036437          357 QQ----QFVLSPS-TPSP-------SAGSIMNPFAAHHDYFSNKSFLDDDQKMINY----HNHIHNNSNGSCQLASDTPD  420 (431)
Q Consensus       357 ~~----qf~~s~s-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  420 (431)
                      +.    ++.|.++ |++-       +..++++.     ||.++.|.+.|...++..    ....+. +.+++      .+
T Consensus       443 ~~~r~l~~~l~~~~~~s~~~~~~~~~~~~~~~~-----d~g~~~g~~~d~~~~~~~l~~~r~~~s~-~~~~~------~~  510 (528)
T KOG1595|consen  443 MSSRELRASLKRSSTLSDKPAMNSSGQFSFNNS-----DWGPRAGELLDWGVQSDLLNKLRESTSF-ELGSA------GE  510 (528)
T ss_pred             ccchhhhhhhcccccccccccccCccccccccC-----CcCcccCcccchhhhHHHHhhcccCccc-ccCCC------CC
Confidence            11    7888884 4553       22348888     999999999888755443    333323 33433      49


Q ss_pred             CCcchhhhhcC
Q 036437          421 PDLGWVNELLT  431 (431)
Q Consensus       421 ~dl~wvn~ll~  431 (431)
                      ||++|||.||+
T Consensus       511 pd~swv~~ll~  521 (528)
T KOG1595|consen  511 PDVSWVQSLLK  521 (528)
T ss_pred             cCcchhhhhcc
Confidence            99999999985

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 1e-13
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 3e-08
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 6e-08
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 4e-05
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 6e-07
2rhk_C72 Cleavage and polyadenylation specificity factor su 2e-04
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 4e-04
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 9e-04
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70 Back     alignment and structure
 Score = 64.7 bits (157), Expect = 1e-13
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 153 VCSEYRRGGGCSLGD-DCEFAHGVFECWLHPSRYRTEACKDGKN--CKRKVCFFAHSPRQ 209
           VC EY+RG  C+ G+ DC FAH      +  +      C D     C R+ C + H P  
Sbjct: 8   VCREYQRGN-CNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAH 66

Query: 210 LR 211
           L+
Sbjct: 67  LQ 68
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Length = 83 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Length = 80 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query431
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 99.32
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 99.07
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 98.86
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 98.59
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 98.41
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 98.34
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 98.34
2rhk_C72 Cleavage and polyadenylation specificity factor su 98.31
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 97.95
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 97.94
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 97.75
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 97.74
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 97.52
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 97.33
2rhk_C72 Cleavage and polyadenylation specificity factor su 97.14
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 96.71
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 96.4
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 94.75
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 95.33
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 91.38
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 82.31
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 81.63
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
Probab=99.32  E-value=5.5e-13  Score=103.94  Aligned_cols=62  Identities=37%  Similarity=0.862  Sum_probs=30.2

Q ss_pred             CCccccccccccCCCCCCCCCCCCCCcCcccccc---CccccccccCcCC---CCCCC-CCCCcCCCccc
Q 036437          147 YHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWL---HPSRYRTEACKDG---KNCKR-KVCFFAHSPRQ  209 (431)
Q Consensus       147 ~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELry---HP~~YKTk~Ck~~---~nC~r-~~C~FAHgeeE  209 (431)
                      .+|++++|+.|.+.+.|++|++|.|+|+..|++.   || .|||++|+.|   +.|++ ..|.|+|+..|
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~-~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccc-cccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            3689999999975559999999999999999985   44 7999999865   58998 68999999876
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 431
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 0.001
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 0.002
d1rgoa234 g.66.1.1 (A:187-220) Butyrate response factor 2 (T 0.002
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 154 CSEYRRGGGCSLGDDCEFAHGVFE 177
           C  +   G C  G+ C+FAHG  E
Sbjct: 9   CRPFEESGTCKYGEKCQFAHGFHE 32
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query431
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 98.8
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.79
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.59
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 98.52
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.51
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.25
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 94.54
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 87.58
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=1e-09  Score=77.40  Aligned_cols=34  Identities=35%  Similarity=0.797  Sum_probs=30.8

Q ss_pred             CCccccccccccCCCCCCCCCCCCCCcCcccccc
Q 036437          147 YHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWL  180 (431)
Q Consensus       147 ~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELry  180 (431)
                      .+|||++|+.|.+++.|++|++|.||||..||+-
T Consensus         5 ~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   38 (40)
T d1m9oa_           5 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ   38 (40)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG
T ss_pred             CccccccChhhhcCCcCCCCCCCCCCCCHHHhcC
Confidence            4699999999998779999999999999999973
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure