Citrus Sinensis ID: 036461
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 369 | 2.2.26 [Sep-21-2011] | |||||||
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.975 | 0.598 | 0.379 | 1e-75 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.975 | 0.586 | 0.385 | 6e-75 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.975 | 0.565 | 0.396 | 7e-75 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.975 | 0.572 | 0.393 | 2e-74 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.975 | 0.567 | 0.390 | 2e-73 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.972 | 0.557 | 0.389 | 1e-72 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.975 | 0.571 | 0.374 | 2e-72 | |
| Q9CAM8 | 629 | Pentatricopeptide repeat- | no | no | 0.967 | 0.567 | 0.390 | 3e-72 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.975 | 0.571 | 0.379 | 3e-72 | |
| Q9SH26 | 577 | Pentatricopeptide repeat- | no | no | 0.975 | 0.623 | 0.379 | 4e-72 |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 283 bits (725), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 219/366 (59%), Gaps = 6/366 (1%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA L ++ GC+P+V TYN+++NG+CR+G T +AL+L +M N K +
Sbjct: 176 EAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN------VKADVF 229
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
TY+TIID LC++G +D A LF +M+ + I +VVTYNSL+ G C A WN+ L +M
Sbjct: 230 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM 289
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+ + + PNV++FNV+++ K GK+ EA+ L + MI G+ PN YNTLMDG+C+ R+
Sbjct: 290 VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ A + M C ++ +++ LI GYC K ++ + ++ + +G+ + V Y+ L
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSIL 409
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
G + +++ A +LF EM HGV D Y +DGLC NG + +A+E+F L+ K
Sbjct: 410 VQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 469
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
+L I Y +I+G+CK G+++ AW LF SLP + +V+TY +MI LC G + +A
Sbjct: 470 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 529
Query: 362 LFLDME 367
L ME
Sbjct: 530 LLRKME 535
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (718), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 219/366 (59%), Gaps = 6/366 (1%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA AL ++ V GC+P++ TY +INGLC+ G +ALNL +M G E + V
Sbjct: 188 EAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE------ADVV 241
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
Y+T+ID LCK VD A LF +M ++ I P+V TY+SLI C W++A L +M
Sbjct: 242 IYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM 301
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVV+FN +++ K GK+ EA +L + MIQ + PN YN+L++GFC+ R+
Sbjct: 302 LERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRL 361
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ A+++F M S C +V +Y+ LING+CK K++ + L+ +M +G+ + V Y TL
Sbjct: 362 DEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTL 421
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
G F+ + A +F +M GV + Y T +DGLCKNG + +A+ +F L+ K
Sbjct: 422 IHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKM 481
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
E DI YN + +G+CK+G+++ W+LF SL + DV+ YN MI C G ++A
Sbjct: 482 EPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYT 541
Query: 362 LFLDME 367
LF+ M+
Sbjct: 542 LFIKMK 547
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (718), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 215/366 (58%), Gaps = 6/366 (1%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA L K+ +GC+PN TY ++N +C++G T +A+ L +M N K + V
Sbjct: 211 EAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN------IKLDAV 264
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
Y+ IIDGLCK G +D A LF +M+ + I N++TYN LI GFC A W++ L +M
Sbjct: 265 KYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDM 324
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+ + + PNVV+F+V+++ K GK+ EA L + MI G+ P+ Y +L+DGFC +
Sbjct: 325 IKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHL 384
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
++A ++ M S GC N+ +++ILINGYCK I+ L L+ +M +G+ D V YNTL
Sbjct: 385 DKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTL 444
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
G E+ ++ A +LF EM V + Y+ +DGLC NG +A+E+F + K
Sbjct: 445 IQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKM 504
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
ELDI YN +I G+C + ++ AW+LF SLP + V TYNIMI LC G + +A
Sbjct: 505 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAEL 564
Query: 362 LFLDME 367
LF ME
Sbjct: 565 LFRKME 570
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 280 bits (715), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 221/366 (60%), Gaps = 6/366 (1%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA AL ++ GC+P++FTY T++NGLC+ G +AL+L ++M G E VV
Sbjct: 203 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVV------ 256
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
YTTIID LC V+ A LF +M ++ I PNVVTYNSLI C W++A L +M
Sbjct: 257 IYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 316
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVV+F+ +++ K GK+ EA +L + MI+ + P+ F Y++L++GFC+ R+
Sbjct: 317 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 376
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ A+ +F M S C NV +Y+ LI G+CK K +E + L+ EM +G+ + V YNTL
Sbjct: 377 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 436
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
GLF+ + A K+F +M GV D Y +DGLCK G + +A+ +F L+ K
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
E DI YN +I+G+CK+G+++ W+LF SL + +V+ Y MI C G ++A
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 362 LFLDME 367
LF +M+
Sbjct: 557 LFREMK 562
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/366 (39%), Positives = 218/366 (59%), Gaps = 6/366 (1%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA AL ++ GC+PN+ TY ++NGLC+ G T +ALNL +M E VV
Sbjct: 208 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVV------ 261
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
+ TIID LCK VD A LF +M+ + I PNVVTY+SLI C W++A L +M
Sbjct: 262 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 321
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PN+V+FN +++ K GK EA +L + MI+ + P+ F YN+L++GFC+ R+
Sbjct: 322 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRL 381
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
++A+++F M S C +V +Y+ LI G+CK+K +E L+ EM +G+ D V Y TL
Sbjct: 382 DKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 441
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
GLF + A K+F +M GV D Y +DGLC NG + +A+E+F ++ +
Sbjct: 442 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 501
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
+LDI Y +I+G+CK+G++ W+LF SL + +VVTYN MI LC+ + +A
Sbjct: 502 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA 561
Query: 362 LFLDME 367
L M+
Sbjct: 562 LLKKMK 567
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (699), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 215/365 (58%), Gaps = 6/365 (1%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
+A L ++ G +PN TY ++N +C++G T +A+ L +M N K + V
Sbjct: 211 DAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERN------IKLDAV 264
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
Y+ IIDGLCK+G +D A LF +M+ + +++TYN+LI GFC A W++ L +M
Sbjct: 265 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDM 324
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+ + + PNVV+F+V+++ K GK+ EA +LL+ M+Q G+ PN YN+L+DGFC R+
Sbjct: 325 IKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRL 384
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
A ++ M S GC ++ +++ILINGYCK I+ L L+ EM +G+ + V YNTL
Sbjct: 385 EEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTL 444
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
G + ++E A KLF EM V D +Y+ +DGLC NG + +A+E+F + K
Sbjct: 445 VQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKM 504
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
ELDI Y +I G+C + ++ AW+LF SLP + D YNIMI LC + KA
Sbjct: 505 ELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADI 564
Query: 362 LFLDM 366
LF M
Sbjct: 565 LFRKM 569
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 219/366 (59%), Gaps = 6/366 (1%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA AL ++ GC+P++ TY ++NGLC+ G T +A NL +M G E P +
Sbjct: 204 EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE------PGVL 257
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
Y TIIDGLCK +D A LF +M+ + I PNVVTY+SLI C W++A L +M
Sbjct: 258 IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM 317
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + P+V +F+ +++ K GK+ EA +L + M++ + P+ Y++L++GFC+ R+
Sbjct: 318 IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRL 377
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ A+++F M S C +V +Y+ LI G+CK K +E + ++ EM +G+ + V YN L
Sbjct: 378 DEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 437
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
GLF+ + A ++F EM GV + Y T +DGLCKNG + +A+ +F L+ K
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
E I YN +I+G+CK+G+++ W+LF +L + DVV YN MI C G ++A
Sbjct: 498 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADA 557
Query: 362 LFLDME 367
LF +M+
Sbjct: 558 LFKEMK 563
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 272 bits (696), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 143/366 (39%), Positives = 218/366 (59%), Gaps = 9/366 (2%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA AL ++ GC+P++ TY T++NGLC+ G +ALNL +M K N V
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAAR------IKANVV 259
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
+ TIID LCK V+ A +LF +M+ + I PNVVTYNSLI+ C W++A L M
Sbjct: 260 IFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNM 319
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVV+FN +++ K GK+ EA +L E MIQ + P+ YN L++GFC+ R+
Sbjct: 320 LEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRL 379
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ A+++F M S C N+ +Y+ LING+CK K +E + L+ EM +G+ + V Y T+
Sbjct: 380 DEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTI 439
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
G F+ + A +F +M + V D Y + GLC G + A+ +F+ L+ +
Sbjct: 440 IQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEM 499
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
EL+I YN +I+G+CK+G++ AW+LF SL + DVVTYN MI LC+ + +A D
Sbjct: 500 ELNIFIYNTMIEGMCKAGKVGEAWDLFCSLS---IKPDVVTYNTMISGLCSKRLLQEADD 556
Query: 362 LFLDME 367
LF M+
Sbjct: 557 LFRKMK 562
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 272 bits (695), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 217/366 (59%), Gaps = 6/366 (1%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA AL ++ V GC+P++ TY ++NGLC+ G +AL+L ++M G E P V
Sbjct: 204 EAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIE------PGVV 257
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
Y TIID LC V+ A LF +M ++ I PNVVTYNSLI C W++A L +M
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVV+F+ +++ K GK+ EA +L + MI+ + P+ F Y++L++GFC+ R+
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ A+ +F M S C NV +Y+ LI G+CK K ++ + L+ EM +G+ + V Y TL
Sbjct: 378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
G F+ + + A +F +M GV D Y +DGLC NG + A+ +F L+ K
Sbjct: 438 IHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKM 497
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
E DI YN +I+G+CK+G+++ W+LF SL + +VVTY M+ C G ++A
Sbjct: 498 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADA 557
Query: 362 LFLDME 367
LF +M+
Sbjct: 558 LFREMK 563
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (694), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 215/366 (58%), Gaps = 6/366 (1%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA AL ++ GC+PN+ TY ++NGLC+ G +A NL +M E N V
Sbjct: 208 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE------ANVV 261
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
Y+T+ID LCK D A LF +M+++ + PNV+TY+SLI C W++A L +M
Sbjct: 262 IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDM 321
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVV+FN +++ K GK+ EA +L + MI+ + P+ F Y++L++GFC+ R+
Sbjct: 322 IERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 381
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ A+ +F M S C NV +Y+ LING+CK K I+ + L+ EM +G+ + V Y TL
Sbjct: 382 DEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTL 441
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
G F+ + A +F +M GV + Y T +DGLCKNG + +A+ +F L+ K
Sbjct: 442 IHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 501
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
E I YN +I+G+CK+G+++ W+LF SL + DV+ YN MI C G ++A
Sbjct: 502 EPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADA 561
Query: 362 LFLDME 367
LF M
Sbjct: 562 LFRKMR 567
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 369 | ||||||
| 359479583 | 627 | PREDICTED: pentatricopeptide repeat-cont | 0.964 | 0.567 | 0.532 | 1e-110 | |
| 449529622 | 618 | PREDICTED: pentatricopeptide repeat-cont | 0.975 | 0.582 | 0.519 | 1e-108 | |
| 449520323 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.967 | 0.590 | 0.519 | 1e-107 | |
| 449520325 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.978 | 0.596 | 0.495 | 1e-104 | |
| 449462477 | 597 | PREDICTED: pentatricopeptide repeat-cont | 0.970 | 0.599 | 0.505 | 1e-101 | |
| 255559961 | 628 | pentatricopeptide repeat-containing prot | 0.970 | 0.570 | 0.479 | 3e-97 | |
| 449491568 | 412 | PREDICTED: pentatricopeptide repeat-cont | 0.886 | 0.793 | 0.481 | 3e-86 | |
| 449462479 | 580 | PREDICTED: pentatricopeptide repeat-cont | 0.978 | 0.622 | 0.443 | 2e-85 | |
| 449444222 | 588 | PREDICTED: pentatricopeptide repeat-cont | 0.934 | 0.586 | 0.459 | 7e-83 | |
| 224130786 | 599 | predicted protein [Populus trichocarpa] | 0.975 | 0.601 | 0.428 | 1e-80 |
| >gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera] gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/368 (53%), Positives = 257/368 (69%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA L K+ G PNV TY TL+NGLC TG+T++A+ L EEM NGNG FGV KPN V
Sbjct: 180 EATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLV 239
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
Y TIID LCK+G +DK KELFL+MK I+P+VV Y+S+IHG C+ W AK LF EM
Sbjct: 240 CYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEM 299
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+D+GV PNVV+FNV+++ LCK GKM+EA+ LL+LMIQ G P+ F YNTL+DGFCL GR+
Sbjct: 300 VDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRI 359
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ A +LFVSMES G + + SY++LINGYCK+ + A LY EM+ K I P V+ YNTL
Sbjct: 360 DDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTL 419
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
GLF +V A+ LF EM+ H + ++ Y +DGLCKN ++ EA+ELF L +
Sbjct: 420 LTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDF 479
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
+ I+ +NCLIDGLCK+ +++IA ELF L L +V+TY +MIH LC G+++ A+D
Sbjct: 480 QPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKD 539
Query: 362 LFLDMEAK 369
LFL ME K
Sbjct: 540 LFLGMEEK 547
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/366 (51%), Positives = 262/366 (71%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA LF++++ GC PN TY TLI GLC+TG+ +AL L +EM N ++GV CKP +
Sbjct: 179 EATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVI 238
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
TY+ IIDGLCK G D+AKELF +MK + + P+V++Y++LIHGFC A W+++K LF EM
Sbjct: 239 TYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEM 298
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+DQGVQP++V+F+V+++ LCK GK+ EA +LLE+MIQ G+ PN YN+L+DGFC+ G +
Sbjct: 299 VDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDL 358
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
N A ELF+SM S G + + SY+ LINGYCK +++ A++LY+EML G P+V Y TL
Sbjct: 359 NSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTL 418
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
GLF+ +V A KLF M+ +GV+A++ Y F+DGLCKN + EA+ELF L+ +
Sbjct: 419 LKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNF 478
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
+L+I Y+CLIDGLCK+G+L+ AWELF L + L DVVTYNIMIH C G++D A
Sbjct: 479 KLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANI 538
Query: 362 LFLDME 367
LF ME
Sbjct: 539 LFEKME 544
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/366 (51%), Positives = 254/366 (69%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
+AA LF +++ GC PN TY TL+ GLCRTG+ +AL L +EM N + +G+ KP +
Sbjct: 184 KAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVI 243
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
+Y+ IID LCK+ D+A++LF +MK + + P V++Y SLIHGFC W EAK LF EM
Sbjct: 244 SYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEM 303
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
++QGVQPNVV+FNV+++ LCK GK+ EA LLE+MIQ G+ PN YN+L++GFCL G +
Sbjct: 304 VNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDL 363
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
N A ELFVSM S GC+ +V Y++LINGYCK ++E A+ LY+ ML G +PDV Y L
Sbjct: 364 NSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGAL 423
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
GLF+ +V A KLF M+ +G+ D + Y F++GLCKNG + EA+ELF L+
Sbjct: 424 LTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNI 483
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
+LDI +NCLIDGLCK+G+L+ AWELF LP+ L DVVTYNIMIH C G++ KA
Sbjct: 484 KLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANI 543
Query: 362 LFLDME 367
LF ME
Sbjct: 544 LFQKME 549
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/367 (49%), Positives = 259/367 (70%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA LF++++ GC P+V TY TLI GLC TG+ +AL L +EM N + + CKPN +
Sbjct: 157 EATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVI 216
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
TY I+DGLCK G D+AK+LF +MK + + P++++YNSLIHGFC A W E+K L EM
Sbjct: 217 TYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEM 276
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+DQG+QP++V+FNV+++ LCK GK+ EA +LL +MI+ G+ P+ YN+L++GFC+ G +
Sbjct: 277 LDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDL 336
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
N A ELFVSM S GC+ +V SY++LINGY K ++E A+ LY+EML G +P+V+ Y++L
Sbjct: 337 NSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSL 396
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
G+F +V+ A KLF M+ HG+A +++ Y F+DGLCKN + EA++LF L+ +
Sbjct: 397 LKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNF 456
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
+L+I NCLIDGLCK+G+L+ AWELF L +VVTY IMIH C +G++DKA
Sbjct: 457 KLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANV 516
Query: 362 LFLDMEA 368
L MEA
Sbjct: 517 LIQKMEA 523
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/366 (50%), Positives = 250/366 (68%), Gaps = 8/366 (2%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
+AA LF +++ GC PN TY TL+ GLCRTG+ +AL L +EM N + +G+ KP +
Sbjct: 184 KAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVI 243
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
+Y+ IID LCK+ D+A++LF +MK + + P V++Y SL+ W EAK LF EM
Sbjct: 244 SYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM--------WEEAKRLFNEM 295
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
++QGVQPNVV+FNV+++ LCK GK+ EA LLE+MIQ G+ PN YN+L++GFCL G +
Sbjct: 296 VNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDL 355
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
N A ELFVSM S GC+ +V Y++LINGYCK ++E A+ LY+ ML G +PDV Y L
Sbjct: 356 NSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGAL 415
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
GLF+ +V A KLF M+ +G+ D + Y F++GLCKNG + EA+ELF L+
Sbjct: 416 LTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNI 475
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
+LDI +NCLIDGLCK+G+L+ AWELF LP+ L DVVTYNIMIH C G++ KA
Sbjct: 476 KLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANI 535
Query: 362 LFLDME 367
LF ME
Sbjct: 536 LFQKME 541
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 178/371 (47%), Positives = 251/371 (67%), Gaps = 13/371 (3%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA +F + VF C P+ T LI+GLCRTG+T AL L E M NGN +FG+ CKP V
Sbjct: 195 EAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVV 254
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
+Y+ IID LCK+G V++AKE F++MK++ I PNVVTY SL+HG C A++W EAK LFIEM
Sbjct: 255 SYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEM 314
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+D G+ P+VV+F+V++ LCK GK+ EAS L +LM+Q V P+ YN L++G+CL G V
Sbjct: 315 VDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMV 374
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ +++F+SM + C+H+ SYSIL+ YCK+ E+ GA+ LY EM+ +GI+P V+ Y+
Sbjct: 375 DEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYS-- 432
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYR---TFIDGLCKNGYIVEAVELFRTLRI 298
+V A KLF E+Q + D+ +Y ++DGLCKNG + EA+++F L
Sbjct: 433 --------KVGDARKLFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLEN 484
Query: 299 LKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDK 358
K+ ++ +N LI+G+C+S +L+IAWELF L L DVVTY IMI+ LC G+ K
Sbjct: 485 CKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQK 544
Query: 359 ARDLFLDMEAK 369
A DLFL+ME K
Sbjct: 545 AYDLFLEMEEK 555
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 231/351 (65%), Gaps = 24/351 (6%)
Query: 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFV 76
P++ TYNTLI GLCR H I +V IIDGLCK G
Sbjct: 43 PDIVTYNTLIKGLCRV-HRI-----------------------SVATCIIIDGLCKVGHE 78
Query: 77 DKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI 136
D+AKE+F +MK + + PNV++Y+SL+HGFC A E+K LF EM+DQGVQPN+V FNV+
Sbjct: 79 DEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVL 138
Query: 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGC 196
++ LCK GK+ EA +LLE+ IQ G+ + YN+L+DGFC G ++ A +LF+SM S GC
Sbjct: 139 IDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGC 198
Query: 197 KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFK 256
+HN SY+ILINGYCK ++E A++LY+EM G +P+V Y+TL GL + +V A K
Sbjct: 199 EHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANK 258
Query: 257 LFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLC 316
LF M+ G++ D+ Y F+DGLCKNG + EA+ELF L+ ++LD +Y+ LIDGLC
Sbjct: 259 LFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLC 318
Query: 317 KSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367
K+G+++IAWE F+ L + L +VVT NIMIH C ++DKA LF ME
Sbjct: 319 KAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKME 369
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 170/383 (44%), Positives = 240/383 (62%), Gaps = 22/383 (5%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
E A F + G PN+ TYNTLI GLC A LF M + C P+ V
Sbjct: 122 EGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQK------LGCTPDVV 175
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDE------NINPNVVTYNSLIHGFCYANDWNEAK 115
TY T+I GLC G ++ A +L +M ++ N PNV+TYN ++ G C +EAK
Sbjct: 176 TYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAK 235
Query: 116 CLFIEM----------MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNA 165
LF EM +DQG+QP++V+FNV+++ LCK GK+ EA +LL +MI+ G+ P+
Sbjct: 236 QLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDL 295
Query: 166 FVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSE 225
YN+L++GFC+ G +N A ELFVSM S GC+ +V SY++LINGY K ++E A+ LY+E
Sbjct: 296 VTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNE 355
Query: 226 MLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285
ML G +P+V+ Y++L G+F +V+ A KLF M+ HG+A +++ Y F+DGLCKN
Sbjct: 356 MLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDC 415
Query: 286 IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNI 345
+ EA++LF L+ ++L+I NCLIDGLCK+G+L+ AWELF L +VVTY I
Sbjct: 416 LFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTI 475
Query: 346 MIHALCADGKMDKARDLFLDMEA 368
MIH C +G++DKA L MEA
Sbjct: 476 MIHGFCREGQVDKANVLIQKMEA 498
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 164/357 (45%), Positives = 225/357 (63%), Gaps = 12/357 (3%)
Query: 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFV 76
P+V T+ TLI GLC I A LF M + C PN VTY T+I GLC G +
Sbjct: 159 PDVVTFTTLIKGLCVEHRIIEATKLFMRMQK------LGCTPNVVTYGTLIKGLCALGNI 212
Query: 77 DKAKELFLKMKDE------NINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV 130
+ A + +M ++ N PNV++Y+ +I G C +W EA CLF EM+DQGVQPNV
Sbjct: 213 NIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNV 272
Query: 131 VSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVS 190
V+F+V+++ LCK G++ +A +LLE+MIQIG+ PN F Y +L+ GFCL G +N A+ELFVS
Sbjct: 273 VTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVS 332
Query: 191 MESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ 250
M S G + +V SY++LINGYCK ++E A+ L++EML G+ PDV L LF +
Sbjct: 333 MPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGK 392
Query: 251 VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNC 310
V+ A +LF ++ + + D F+DGLCKNGYI EA++LF L +LDI + C
Sbjct: 393 VDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGC 452
Query: 311 LIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367
LIDGLCK+G+L+ AWELF L + D + Y+ MIH C G++DKA LF ME
Sbjct: 453 LIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKME 509
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa] gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 228/366 (62%), Gaps = 6/366 (1%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA LF ++ G +P+V +Y+T+INGLC++G+T +AL L +M CKPN V
Sbjct: 180 EAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKG------CKPNLV 233
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
YTTIID LCK+ V+ A +L +M D I P+VVTY++++HGFC NEA LF EM
Sbjct: 234 AYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEM 293
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+ + V PN V+F ++++ LCK G + EA + E M + G PNA+ YN LMDG+CL ++
Sbjct: 294 VGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQM 353
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ A+++ M GC V SY+ILINGYCK + ++ A SL EM K + PD V Y+TL
Sbjct: 354 DEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTL 413
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
GL ++ + + A LF EM G+ D Y T +DGLCK+G++ EA++L ++++ K
Sbjct: 414 MQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKI 473
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
E DI YN LI+G+ +G+L++A ELF L + + TY IMI L +G D+A +
Sbjct: 474 EPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYE 533
Query: 362 LFLDME 367
LF ME
Sbjct: 534 LFRKME 539
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 369 | ||||||
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.972 | 0.563 | 0.400 | 1.3e-70 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.972 | 0.584 | 0.392 | 1.6e-70 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.972 | 0.570 | 0.397 | 7e-70 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.972 | 0.566 | 0.395 | 1e-68 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.970 | 0.555 | 0.393 | 1e-68 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.970 | 0.620 | 0.385 | 1.7e-68 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.967 | 0.567 | 0.390 | 2.1e-68 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.972 | 0.569 | 0.378 | 2.1e-68 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.972 | 0.569 | 0.384 | 4.4e-68 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.972 | 0.579 | 0.378 | 6.5e-67 |
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 147/367 (40%), Positives = 217/367 (59%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA L K+ +GC+PN TY ++N +C++G T +A+ L +M N K + V
Sbjct: 211 EAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN------IKLDAV 264
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
Y+ IIDGLCK G +D A LF +M+ + I N++TYN LI GFC A W++ L +M
Sbjct: 265 KYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDM 324
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+ + + PNVV+F+V+++ K GK+ EA L + MI G+ P+ Y +L+DGFC +
Sbjct: 325 IKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHL 384
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
++A ++ M S GC N+ +++ILINGYCK I+ L L+ +M +G+ D V YNTL
Sbjct: 385 DKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTL 444
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
G E+ ++ A +LF EM V + Y+ +DGLC NG +A+E+F + K
Sbjct: 445 IQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKM 504
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLP-RGVLIADVVTYNIMIHALCADGKMDKAR 360
ELDI YN +I G+C + ++ AW+LF SLP +GV V TYNIMI LC G + +A
Sbjct: 505 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK-PGVKTYNIMIGGLCKKGPLSEAE 563
Query: 361 DLFLDME 367
LF ME
Sbjct: 564 LLFRKME 570
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 144/367 (39%), Positives = 221/367 (60%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA AL ++ V GC+P++ TY +INGLC+ G +ALNL +M G E VV
Sbjct: 188 EAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI----- 242
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
Y+T+ID LCK VD A LF +M ++ I P+V TY+SLI C W++A L +M
Sbjct: 243 -YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM 301
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVV+FN +++ K GK+ EA +L + MIQ + PN YN+L++GFC+ R+
Sbjct: 302 LERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRL 361
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ A+++F M S C +V +Y+ LING+CK K++ + L+ +M +G+ + V Y TL
Sbjct: 362 DEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTL 421
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
G F+ + A +F +M GV + Y T +DGLCKNG + +A+ +F L+ K
Sbjct: 422 IHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKM 481
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLP-RGVLIADVVTYNIMIHALCADGKMDKAR 360
E DI YN + +G+CK+G+++ W+LF SL +GV DV+ YN MI C G ++A
Sbjct: 482 EPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVK-PDVIAYNTMISGFCKKGLKEEAY 540
Query: 361 DLFLDME 367
LF+ M+
Sbjct: 541 TLFIKMK 547
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 146/367 (39%), Positives = 223/367 (60%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA AL ++ GC+P++FTY T++NGLC+ G +AL+L ++M G E VV
Sbjct: 203 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI----- 257
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
YTTIID LC V+ A LF +M ++ I PNVVTYNSLI C W++A L +M
Sbjct: 258 -YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 316
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVV+F+ +++ K GK+ EA +L + MI+ + P+ F Y++L++GFC+ R+
Sbjct: 317 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 376
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ A+ +F M S C NV +Y+ LI G+CK K +E + L+ EM +G+ + V YNTL
Sbjct: 377 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 436
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
GLF+ + A K+F +M GV D Y +DGLCK G + +A+ +F L+ K
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLP-RGVLIADVVTYNIMIHALCADGKMDKAR 360
E DI YN +I+G+CK+G+++ W+LF SL +GV +V+ Y MI C G ++A
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK-PNVIIYTTMISGFCRKGLKEEAD 555
Query: 361 DLFLDME 367
LF +M+
Sbjct: 556 ALFREMK 562
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 145/367 (39%), Positives = 220/367 (59%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA AL ++ GC+PN+ TY ++NGLC+ G T +ALNL +M E VV
Sbjct: 208 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI----- 262
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
+ TIID LCK VD A LF +M+ + I PNVVTY+SLI C W++A L +M
Sbjct: 263 -FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 321
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PN+V+FN +++ K GK EA +L + MI+ + P+ F YN+L++GFC+ R+
Sbjct: 322 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRL 381
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
++A+++F M S C +V +Y+ LI G+CK+K +E L+ EM +G+ D V Y TL
Sbjct: 382 DKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 441
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
GLF + A K+F +M GV D Y +DGLC NG + +A+E+F ++ +
Sbjct: 442 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 501
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLP-RGVLIADVVTYNIMIHALCADGKMDKAR 360
+LDI Y +I+G+CK+G++ W+LF SL +GV +VVTYN MI LC+ + +A
Sbjct: 502 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVK-PNVVTYNTMISGLCSKRLLQEAY 560
Query: 361 DLFLDME 367
L M+
Sbjct: 561 ALLKKMK 567
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 144/366 (39%), Positives = 218/366 (59%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
+A L ++ G +PN TY ++N +C++G T +A+ L +M N K + V
Sbjct: 211 DAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERN------IKLDAV 264
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
Y+ IIDGLCK+G +D A LF +M+ + +++TYN+LI GFC A W++ L +M
Sbjct: 265 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDM 324
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+ + + PNVV+F+V+++ K GK+ EA +LL+ M+Q G+ PN YN+L+DGFC R+
Sbjct: 325 IKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRL 384
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
A ++ M S GC ++ +++ILINGYCK I+ L L+ EM +G+ + V YNTL
Sbjct: 385 EEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTL 444
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
G + ++E A KLF EM V D +Y+ +DGLC NG + +A+E+F + K
Sbjct: 445 VQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKM 504
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLP-RGVLIADVVTYNIMIHALCADGKMDKAR 360
ELDI Y +I G+C + ++ AW+LF SLP +GV + D YNIMI LC + KA
Sbjct: 505 ELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKL-DARAYNIMISELCRKDSLSKAD 563
Query: 361 DLFLDM 366
LF M
Sbjct: 564 ILFRKM 569
|
|
| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 141/366 (38%), Positives = 217/366 (59%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA AL ++ GC+PN+ TY ++NGLC+ G +A NL +M E N V
Sbjct: 208 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE------ANVV 261
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
Y+T+ID LCK D A LF +M+++ + PNV+TY+SLI C W++A L +M
Sbjct: 262 IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDM 321
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVV+FN +++ K GK+ EA +L + MI+ + P+ F Y++L++GFC+ R+
Sbjct: 322 IERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 381
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ A+ +F M S C NV +Y+ LING+CK K I+ + L+ EM +G+ + V Y TL
Sbjct: 382 DEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTL 441
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
G F+ + A +F +M GV + Y T +DGLCKNG + +A+ +F L+ K
Sbjct: 442 IHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 501
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLP-RGVLIADVVTYNIMIHALCADGKMDKAR 360
E I YN +I+G+CK+G+++ W+LF SL +GV DV+ YN MI C G ++A
Sbjct: 502 EPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK-PDVIIYNTMISGFCRKGLKEEAD 560
Query: 361 DLFLDM 366
LF M
Sbjct: 561 ALFRKM 566
|
|
| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 143/366 (39%), Positives = 218/366 (59%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA AL ++ GC+P++ TY T++NGLC+ G +ALNL +M K N V
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAAR------IKANVV 259
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
+ TIID LCK V+ A +LF +M+ + I PNVVTYNSLI+ C W++A L M
Sbjct: 260 IFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNM 319
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVV+FN +++ K GK+ EA +L E MIQ + P+ YN L++GFC+ R+
Sbjct: 320 LEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRL 379
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ A+++F M S C N+ +Y+ LING+CK K +E + L+ EM +G+ + V Y T+
Sbjct: 380 DEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTI 439
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
G F+ + A +F +M + V D Y + GLC G + A+ +F+ L+ +
Sbjct: 440 IQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEM 499
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
EL+I YN +I+G+CK+G++ AW+LF SL + DVVTYN MI LC+ + +A D
Sbjct: 500 ELNIFIYNTMIEGMCKAGKVGEAWDLFCSLS---IKPDVVTYNTMISGLCSKRLLQEADD 556
Query: 362 LFLDME 367
LF M+
Sbjct: 557 LFRKMK 562
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 139/367 (37%), Positives = 221/367 (60%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA AL ++ GC+P++ TY ++NGLC+ G T +A NL +M G E P +
Sbjct: 204 EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE------PGVL 257
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
Y TIIDGLCK +D A LF +M+ + I PNVVTY+SLI C W++A L +M
Sbjct: 258 IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM 317
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + P+V +F+ +++ K GK+ EA +L + M++ + P+ Y++L++GFC+ R+
Sbjct: 318 IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRL 377
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ A+++F M S C +V +Y+ LI G+CK K +E + ++ EM +G+ + V YN L
Sbjct: 378 DEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 437
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
GLF+ + A ++F EM GV + Y T +DGLCKNG + +A+ +F L+ K
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLP-RGVLIADVVTYNIMIHALCADGKMDKAR 360
E I YN +I+G+CK+G+++ W+LF +L +GV DVV YN MI C G ++A
Sbjct: 498 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK-PDVVAYNTMISGFCRKGSKEEAD 556
Query: 361 DLFLDME 367
LF +M+
Sbjct: 557 ALFKEMK 563
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 141/367 (38%), Positives = 219/367 (59%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA AL ++ V GC+P++ TY ++NGLC+ G +AL+L ++M G E P V
Sbjct: 204 EAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIE------PGVV 257
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
Y TIID LC V+ A LF +M ++ I PNVVTYNSLI C W++A L +M
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVV+F+ +++ K GK+ EA +L + MI+ + P+ F Y++L++GFC+ R+
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ A+ +F M S C NV +Y+ LI G+CK K ++ + L+ EM +G+ + V Y TL
Sbjct: 378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
G F+ + + A +F +M GV D Y +DGLC NG + A+ +F L+ K
Sbjct: 438 IHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKM 497
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLP-RGVLIADVVTYNIMIHALCADGKMDKAR 360
E DI YN +I+G+CK+G+++ W+LF SL +GV +VVTY M+ C G ++A
Sbjct: 498 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK-PNVVTYTTMMSGFCRKGLKEEAD 556
Query: 361 DLFLDME 367
LF +M+
Sbjct: 557 ALFREMK 563
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 139/367 (37%), Positives = 218/367 (59%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA L ++ +G +P+ TY ++N LC++G++ +AL+LF +M N K + V
Sbjct: 193 EALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERN------IKASVV 246
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
Y+ +ID LCK+G D A LF +M+ + I +VVTY+SLI G C W++ + EM
Sbjct: 247 QYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM 306
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+ + + P+VV+F+ +++ K GK+ EA L MI G+ P+ YN+L+DGFC +
Sbjct: 307 IGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCL 366
Query: 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241
+ A ++F M S GC+ ++ +YSILIN YCK K ++ + L+ E+ SKG+ P+ + YNTL
Sbjct: 367 HEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTL 426
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
+G + ++ A +LF EM GV Y +DGLC NG + +A+E+F ++ +
Sbjct: 427 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRM 486
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLP-RGVLIADVVTYNIMIHALCADGKMDKAR 360
L I YN +I G+C + ++ AW LF SL +GV DVVTYN+MI LC G + +A
Sbjct: 487 TLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVK-PDVVTYNVMIGGLCKKGSLSEAD 545
Query: 361 DLFLDME 367
LF M+
Sbjct: 546 MLFRKMK 552
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 369 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-31 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-30 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-17 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-17 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-31
Identities = 86/316 (27%), Positives = 153/316 (48%), Gaps = 6/316 (1%)
Query: 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKC 116
K + YTT+I K G VD E+F +M + + NV T+ +LI G A +A
Sbjct: 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528
Query: 117 LFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIG--VRPNAFVYNTLMDG 174
+ M + V+P+ V FN +++ ++G +D A +L M + P+ LM
Sbjct: 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588
Query: 175 FCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 234
G+V+RA+E++ + K Y+I +N + + + ALS+Y +M KG+KPD
Sbjct: 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
Query: 235 VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN-GYIVEAVELF 293
V ++ L +++AF++ + ++ G+ T +Y + + G C N +A+EL+
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM-GACSNAKNWKKALELY 707
Query: 294 RTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCAD 353
++ +K + N LI LC+ +L A E+ + R L + +TY+I++ A
Sbjct: 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767
Query: 354 GKMDKARDLFLDMEAK 369
D DL +AK
Sbjct: 768 DDADVGLDLL--SQAK 781
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 1e-30
Identities = 77/319 (24%), Positives = 147/319 (46%), Gaps = 19/319 (5%)
Query: 6 LFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV----CKPNTV 61
+F ++ G E NV T+ LI+G R G ++A G +G++ KP+ V
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAG----------QVAKAFGAYGIMRSKNVKPDRV 543
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDEN--INPNVVTYNSLIHGFCYANDWNEAKCLFI 119
+ +I + G VD+A ++ +MK E I+P+ +T +L+ A + AK ++
Sbjct: 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY- 602
Query: 120 EMMDQ-GVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT 178
+M+ + ++ + + +N + G D A + + M + GV+P+ ++ L+D
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
Query: 179 GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIY 238
G +++A E+ G K SYS L+ K + AL LY ++ S ++P V
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722
Query: 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRI 298
N L L E +Q+ +A ++ EM+R G+ +T Y + + ++L +
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782
Query: 299 LKYELDIRAYNCLIDGLCK 317
+ ++ C+ GLC
Sbjct: 783 DGIKPNLVMCRCIT-GLCL 800
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 81.3 bits (202), Expect = 1e-19
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 58 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 106
P+ VTY T+IDG CK+G V++A +LF +MK I PNV TY+ LI G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 4e-19
Identities = 58/248 (23%), Positives = 117/248 (47%), Gaps = 10/248 (4%)
Query: 128 PNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEEL 187
P + +FN++M+ + +D A R+L L+ + G++ + +Y TL+ +G+V+ E+
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 188 FVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE 247
F M + G + NV ++ LI+G + ++ A Y M SK +KPD V++N L +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 248 IHQVERAFKLFDEM--QRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDI 305
V+RAF + EM + H + D + G + A E+++ + E +I
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH----EYNI 610
Query: 306 RA----YNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361
+ Y ++ + G A ++ + + + D V ++ ++ G +DKA +
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 362 LFLDMEAK 369
+ D +
Sbjct: 671 ILQDARKQ 678
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 1e-17
Identities = 79/324 (24%), Positives = 141/324 (43%), Gaps = 56/324 (17%)
Query: 11 RVFGCEP--NVFTYNTLINGLCRTGHTIVALNLFEEM------------------ANGNG 50
R+F P N+ ++ T+I GL G+ A LF EM + G G
Sbjct: 179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238
Query: 51 -------------EFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97
+ GVV +T +ID K G ++ A+ +F M ++ V
Sbjct: 239 SARAGQQLHCCVLKTGVV--GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT----TVA 292
Query: 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMI 157
+NS++ G+ EA CL+ EM D GV + +F++++ + ++ A + +I
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 158 QIGVRPNAFVYNT-LMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEI 216
+ G P V NT L+D + GR+ A +F M + N+ S++ LI GY +
Sbjct: 353 RTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRG 407
Query: 217 EGALSLYSEMLSKGIKPDVVIYNTL-----FIGLFEIHQVERAFKLFDEMQR-HGVAADT 270
A+ ++ M+++G+ P+ V + + + GL E+ +++F M H +
Sbjct: 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL-----SEQGWEIFQSMSENHRIKPRA 462
Query: 271 WAYRTFIDGLCKNGYIVEAVELFR 294
Y I+ L + G + EA + R
Sbjct: 463 MHYACMIELLGREGLLDEAYAMIR 486
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 5e-17
Identities = 56/239 (23%), Positives = 111/239 (46%), Gaps = 11/239 (4%)
Query: 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIE 120
V +I+ K +DKA E+F + +++ V+++ S+I G N EA +F
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHNIPEKD----VISWTSIIAGLRLNNRCFEA-LIFFR 479
Query: 121 MMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180
M ++PN V+ ++ + G + + +++ G+ + F+ N L+D + GR
Sbjct: 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
Query: 181 VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNT 240
+N A F S + +V S++IL+ GY + + A+ L++ M+ G+ PD V + +
Sbjct: 540 MNYAWNQFNS-----HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594
Query: 241 LFIGLFEIHQVERAFKLFDEMQ-RHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRI 298
L V + + F M+ ++ + + Y +D L + G + EA + I
Sbjct: 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI 653
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-16
Identities = 95/462 (20%), Positives = 170/462 (36%), Gaps = 129/462 (27%)
Query: 11 RVFG--CEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTI-- 66
VFG E ++F++N L+ G + G+ AL L+ M +P+ T+ +
Sbjct: 142 YVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM------LWAGVRPDVYTFPCVLR 195
Query: 67 --------------------------IDGL-------CKEGFVDKAKELFLKMKDENINP 93
+D + K G V A+ +F +M +
Sbjct: 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC-- 253
Query: 94 NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLL 153
+++N++I G+ + E LF M + V P++++ +++ G +
Sbjct: 254 --ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311
Query: 154 ELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKN 213
+++ G + V N+L+ + G AE++F ME K + S++ +I+GY KN
Sbjct: 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TK-DAVSWTAMISGYEKN 367
Query: 214 KEIEGALSLYSEMLSKGIKPD-----------------------------------VVIY 238
+ AL Y+ M + PD VV+
Sbjct: 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427
Query: 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRI 298
N L + +++A ++F + V +W + I GL N EA+ FR + +
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEKDVI--SWT--SIIAGLRLNNRCFEALIFFRQMLL 483
Query: 299 ---------------------LKYELDIRAY-------------NCLIDGLCKSGRLKIA 324
L +I A+ N L+D + GR+ A
Sbjct: 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543
Query: 325 WELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366
W F S + DVV++NI++ A GK A +LF M
Sbjct: 544 WNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRM 580
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.4 bits (179), Expect = 2e-16
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 93 PNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK 142
P+VVTYN+LI G+C EA LF EM +G++PNV +++++++ LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 3e-16
Identities = 70/296 (23%), Positives = 130/296 (43%), Gaps = 14/296 (4%)
Query: 72 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVV 131
K G + A+ LF +M + N+ ++ ++I G A ++ EA LF EM + G
Sbjct: 170 KCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225
Query: 132 SFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSM 191
+F V++ G +L +++ GV + FV L+D + G + A +F M
Sbjct: 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285
Query: 192 ESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF-EIHQ 250
+ +++ ++ GY + E AL LY EM G+ D ++ + I +F +
Sbjct: 286 P----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM-IRIFSRLAL 340
Query: 251 VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNC 310
+E A + + R G D A +D K G + +A +F + ++ ++N
Sbjct: 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNA 396
Query: 311 LIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366
LI G GR A E+F + + + VT+ ++ A G ++ ++F M
Sbjct: 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 4e-16
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 163 PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK 212
P+ YNTL+DG+C G+V A +LF M+ G K NV++YSILI+G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.1 bits (173), Expect = 9e-16
Identities = 20/49 (40%), Positives = 35/49 (71%)
Query: 128 PNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFC 176
P+VV++N +++ CK GK++EA +L M + G++PN + Y+ L+DG C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.1 bits (173), Expect = 1e-15
Identities = 28/56 (50%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK 72
P+V TYNTLI+G C+ G AL LF EM KPN TY+ +IDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG------IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 1e-15
Identities = 79/351 (22%), Positives = 147/351 (41%), Gaps = 56/351 (15%)
Query: 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVD 77
+V N+LI G A +F M K + V++T +I G K G D
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME---------TK-DAVSWTAMISGYEKNGLPD 371
Query: 78 KAKELFLKMKDENINPNVVTYNS-------------------------LIHGFCYAND-- 110
KA E + M+ +N++P+ +T S LI AN
Sbjct: 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431
Query: 111 --WNEAKCL--FIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAF 166
+++ KC+ +E+ + +V+S+ I+ L N + EA M+ + ++PN+
Sbjct: 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSV 490
Query: 167 VYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226
+ G + +E+ + G + F + L++ Y + + A + ++
Sbjct: 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550
Query: 227 LSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLC---KN 283
+ DVV +N L G + A +LF+ M GV D TFI LC ++
Sbjct: 551 -----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE---VTFISLLCACSRS 602
Query: 284 GYIVEAVELFRTLRILKYEL--DIRAYNCLIDGLCKSGRLKIAWELFRSLP 332
G + + +E F ++ KY + +++ Y C++D L ++G+L A+ +P
Sbjct: 603 GMVTQGLEYFHSMEE-KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 5e-15
Identities = 75/332 (22%), Positives = 135/332 (40%), Gaps = 19/332 (5%)
Query: 38 ALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97
AL LFE + F + TY +++ + K ++ ++ P+
Sbjct: 106 ALELFE-ILEAGCPFTL----PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMI 157
N ++ +A+ LF EM ++ N+ S+ I+ L G EA L M
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 158 QIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217
+ G + ++ G ++L + G + F LI+ Y K +IE
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276
Query: 218 GALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH-QVERAFKLFDEMQRHGVAADTWAYRTF 276
A ++ M K V +N++ G + +H E A L+ EM+ GV+ D + +
Sbjct: 277 DARCVFDGMPEK----TTVAWNSMLAG-YALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331
Query: 277 IDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVL 336
I + + A + L + LDI A L+D K GR++ A +F +PR
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--- 388
Query: 337 IADVVTYNIMIHALCADGKMDKARDLFLDMEA 368
+++++N +I G+ KA ++F M A
Sbjct: 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIA 419
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 21/216 (9%)
Query: 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKC 116
K TV+Y++++ KA EL+ +K + P V T N+LI C N +A
Sbjct: 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740
Query: 117 LFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFC 176
+ EM G+ PN +++++++ + D LL + G++PN + + G C
Sbjct: 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
Query: 177 LTGRVNRA---EELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP 233
L R +A E VS +S +NK AL +Y E +S G P
Sbjct: 800 LR-RFEKACALGEPVVSFDSG-------------RPQIENKWTSWALMVYRETISAGTLP 845
Query: 234 DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAAD 269
+ + + + L H +L + + G++AD
Sbjct: 846 TMEVLSQVLGCLQLPHDATLRNRLIENL---GISAD 878
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 3e-14
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 233 PDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK 282
PDVV YNTL G + +VE A KLF+EM++ G+ + + Y IDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 3e-14
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 199 NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGL 245
+V +Y+ LI+GYCK ++E AL L++EM +GIKP+V Y+ L GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 4e-14
Identities = 78/359 (21%), Positives = 153/359 (42%), Gaps = 21/359 (5%)
Query: 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVT 62
A++ + G EP+ + N ++ + G I A LF+EM N +
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----------AS 191
Query: 63 YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMM 122
+ TII GL G +A LF +M ++ + T+ ++ + L ++
Sbjct: 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251
Query: 123 DQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182
GV + +++ K G +++A + + M + +N+++ G+ L G
Sbjct: 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSE 307
Query: 183 RAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 242
A L+ M G + F++SI+I + + +E A ++ ++ G D+V NT
Sbjct: 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA-NTAL 366
Query: 243 IGLF-EIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301
+ L+ + ++E A +FD M R + ++ I G +G +AVE+F +
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIAD-VVTYNIMIHALCADGKMDKA 359
+ + ++ SG + WE+F+S+ I + Y MI L +G +D+A
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-13
Identities = 73/311 (23%), Positives = 119/311 (38%), Gaps = 53/311 (17%)
Query: 99 NSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEA-----SRLL 153
NS + C +A L M + V + ++ V + LC+ + E SR L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAY-VALFRLCEWKRAVEEGSRVCSRAL 113
Query: 154 ELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKN 213
+GVR + N ++ F G + A +F M + ++FS+++L+ GY K
Sbjct: 114 SSHPSLGVR----LGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKA 165
Query: 214 KEIEGALSLYSEMLSKGIKPDVVIY----------------------------------- 238
+ AL LY ML G++PDV +
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225
Query: 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRI 298
N L + V A +FD M R D ++ I G +NG +E +ELF T+R
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRE 281
Query: 299 LKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDK 358
L + D+ +I G ++ E+ + + DV N +I + G +
Sbjct: 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341
Query: 359 ARDLFLDMEAK 369
A +F ME K
Sbjct: 342 AEKVFSRMETK 352
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 2e-12
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 304 DIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALC 351
D+ YN LIDG CK G+++ A +LF + + + +V TY+I+I LC
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 41/184 (22%), Positives = 86/184 (46%), Gaps = 11/184 (5%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 61
EA L+ ++R G + FT++ +I R L ++ G G + V
Sbjct: 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA----LLEHAKQAHAGLIRTGF--PLDIV 361
Query: 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
T ++D K G ++ A+ +F +M +N+ +++N+LI G+ +A +F M
Sbjct: 362 ANTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERM 417
Query: 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI-GVRPNAFVYNTLMDGFCLTGR 180
+ +GV PN V+F +++ +G ++ + + M + ++P A Y +++ G
Sbjct: 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477
Query: 181 VNRA 184
++ A
Sbjct: 478 LDEA 481
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 76/360 (21%), Positives = 133/360 (36%), Gaps = 90/360 (25%)
Query: 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELC 141
+F KM + + + ++N L+ G+ A ++EA CL+ M+ GV+P+V +F ++ C
Sbjct: 143 VFGKMPERD----LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT-C 197
Query: 142 KNGKMDEA-SRLLEL-MIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN 199
G D A R + +++ G + V N L+ + G V A +F M C
Sbjct: 198 -GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC--- 253
Query: 200 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP-------------------------- 233
S++ +I+GY +N E L L+ M + P
Sbjct: 254 -ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312
Query: 234 ---------DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG 284
DV + N+L + A K+F M+ D ++ I G KNG
Sbjct: 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNG 368
Query: 285 YIVEAVELFRTLR---------------------------ILKYELDIRA--------YN 309
+A+E + + + +EL R N
Sbjct: 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428
Query: 310 CLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEAK 369
LI+ K + A E+F ++P DV+++ +I L + + +A F M
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.8 bits (136), Expect = 8e-11
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 56 CKPNTVTYTTIIDGLCKEGFVDKAKELFLKMK 87
KP+ VTY T+IDGLC+ G VD+A EL +M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.0 bits (134), Expect = 2e-10
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 13 FGCEPNVFTYNTLINGLCRTGHTIVALNLFEEM 45
G +P+V TYNTLI+GLCR G A+ L +EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 6e-09
Identities = 64/310 (20%), Positives = 120/310 (38%), Gaps = 9/310 (2%)
Query: 61 VTYTTIIDGLCKEGFVDKAKELFLKMK-DENINPNVVTYNSLIHGFCYANDWNEAKCLFI 119
V+ + I+ L G +A ELF ++ TY++L+ K ++
Sbjct: 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYW 147
Query: 120 EMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTG 179
+ G +P+ N ++ K G + +A RL + M + N + T++ G G
Sbjct: 148 HVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAG 203
Query: 180 RVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYN 239
A LF M G ++ +++ L+ +L G+ D +
Sbjct: 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263
Query: 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299
L + +E A +FD M T A+ + + G +GY EA+ L+ +R
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319
Query: 300 KYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKA 359
+D ++ +I + L+ A + L R D+V ++ G+M+ A
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379
Query: 360 RDLFLDMEAK 369
R++F M K
Sbjct: 380 RNVFDRMPRK 389
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVT 62
A L+ ++ P V T N LI LC AL + EM G+ PNT+T
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR----LGL--CPNTIT 756
Query: 63 YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 106
Y+ ++ ++ D +L + K++ I PN+V + G C
Sbjct: 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 2e-08
Identities = 14/33 (42%), Positives = 27/33 (81%)
Query: 124 QGVQPNVVSFNVIMNELCKNGKMDEASRLLELM 156
+G++P+VV++N +++ LC+ G++DEA LL+ M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 2e-08
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 160 GVRPNAFVYNTLMDGFCLTGRVNRAEELFVSME 192
G++P+ YNTL+DG C GRV+ A EL ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-08
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 201 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV 235
+Y+ LI+G CK +E AL L+ EM +GI+PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 7e-08
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 339 DVVTYNIMIHALCADGKMDKARDLFLDMEAK 369
DVVTYN +I C GK+++A LF +M+ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKR 32
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 1e-07
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 339 DVVTYNIMIHALCADGKMDKARDLFLDME 367
DVVTYN +I LC G++D+A +L +ME
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 2e-07
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 194 MGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226
G K +V +Y+ LI+G C+ ++ A+ L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 3e-07
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 90 NINPNVVTYNSLIHGFCYANDWNEAKCLFIEM 121
+ P+VVTYN+LI G C A +EA L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 4e-07
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95
VTY T+IDGLCK G V++A ELF +MK+ I P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 8e-07
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV 130
VTYN+LI G C A EA LF EM ++G++P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 8e-07
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENI 91
VTY ++I G CK G +++A ELF +MK++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-06
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 201 FSYSILINGYCKNKEIEGALSLYSEMLSKGI 231
+Y+ LI+GYCK ++E AL L+ EM KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCR 31
EA LF +++ G +PNV+TY+ LI+GLC+
Sbjct: 21 EALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 15 CEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG 74
E +V ++N L+ G G +A+ LF M E GV P+ VT+ +++ + G
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMV----ESGV--NPDEVTFISLLCACSRSG 603
Query: 75 FVDKAKELFLKMKDE-NINPNVVTYNSLIHGFCYANDWNEAKCLFIEMM 122
V + E F M+++ +I PN+ Y ++ A EA FI M
Sbjct: 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY-NFINKM 651
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 2e-05
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 229 KGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQ 262
KG+KPDVV YNTL GL +V+ A +L DEM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 166 FVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNV 200
YNTL+DG C GRV A ELF M+ G + +V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 3e-05
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 341 VTYNIMIHALCADGKMDKARDLFLDMEAK 369
VTYN +I C GK+++A +LF +M+ K
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 3e-05
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 200 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP 233
+ +Y+ L+ K + + AL++ EM + G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 4e-05
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 301 YELDIRAYNCLIDGLCKSGRLKIAWELFR 329
+ D+ YN LIDGLC++GR+ A EL
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 5e-05
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGV 126
VTYNSLI G+C A EA LF EM ++GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 6e-05
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 341 VTYNIMIHALCADGKMDKARDLFLDMEAK 369
VTYN +I LC G++++A +LF +M+ +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKER 29
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 1e-04
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 265 GVAADTWAYRTFIDGLCKNGYIVEAVELFR 294
G+ D Y T IDGLC+ G + EAVEL
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 1e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 166 FVYNTLMDGFCLTGRVNRAEELFVSMESMGC 196
YN+L+ G+C G++ A ELF M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 2e-04
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 131 VSFNVIMNELCKNGKMDEASRLLELMIQIGV 161
V++N +++ CK GK++EA L + M + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 3e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 20 FTYNTLINGLCRTGHTIVALNLFEEM 45
TYN+LI+G C+ G AL LF+EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 38/177 (21%)
Query: 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVD 77
N+ ++N LI G G A+ +FE M GV PN VT+ ++ G +
Sbjct: 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAE----GVA--PNHVTFLAVLSACRYSGLSE 443
Query: 78 KAKELFLKM-KDENINPNVVTYNSLIHGFCYANDWNEA-----KCLFIEMMDQ------- 124
+ E+F M ++ I P + Y +I +EA + F ++
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTA 503
Query: 125 ------------------GVQPNVV-SFNVIMNELCKNGKMDEASRLLELMIQIGVR 162
G+ P + ++ V++N +G+ EA++++E + + G+
Sbjct: 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560
|
Length = 697 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 7e-04
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 95 VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQP 128
+ TYN+L+ A D + A + EM G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 9e-04
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 131 VSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNA 165
V++N +++ LCK G+++EA L + M + G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 9e-04
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 130 VVSFNVIMNELCKNGKMDEASRLLELMIQIGVRP 163
+ ++N ++ L K G D A +LE M G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.001
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 236 VIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT 270
V YNTL GL + +VE A +LF EM+ G+ D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 20 FTYNTLINGLCRTGHTIVALNLFEEM 45
TYNTLI+GLC+ G AL LF+EM
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM 26
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 369 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.96 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.95 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.95 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.85 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.83 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.82 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.82 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.82 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.81 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.81 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.81 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.8 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.77 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.77 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.76 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.76 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.76 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.75 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.75 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.73 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.71 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.69 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.66 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.65 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.65 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.65 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.62 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.6 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.6 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.58 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.57 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.55 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.53 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.52 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.51 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.5 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.5 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.5 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.49 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.48 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.48 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.47 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.46 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.45 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.45 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.45 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.45 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.42 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.4 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.39 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.34 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.31 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.3 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.3 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.27 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.27 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.26 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.25 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.24 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.21 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.2 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.19 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.18 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.17 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.14 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.12 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.11 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.11 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.1 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.07 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.06 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.06 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.06 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.05 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.03 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.01 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.96 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.96 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.95 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.94 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.93 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.9 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.9 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.9 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.9 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.89 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.89 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.88 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.87 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.86 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.86 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.84 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.8 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.79 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.74 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.71 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.69 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.69 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.68 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.67 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.66 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.62 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.57 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.54 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.43 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.4 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.39 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.38 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.37 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.34 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.29 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.26 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.25 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.25 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.25 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.24 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.24 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.24 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.22 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.22 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.22 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.22 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.21 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.21 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.2 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.2 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.18 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.18 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.16 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.13 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.12 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.09 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.09 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.07 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.07 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.07 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.06 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.05 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.03 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.01 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.0 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.99 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.98 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.98 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.97 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.97 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.97 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.95 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.94 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.94 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.93 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.9 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.9 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.85 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.84 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.84 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.82 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.8 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.76 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.73 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.72 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.72 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.7 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.66 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.63 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.63 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.63 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.61 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.58 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.58 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.54 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.52 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.52 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.52 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.51 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.51 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.48 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.42 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.41 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.33 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.29 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.28 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.28 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.24 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.2 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.2 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.14 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.14 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.12 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.1 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.1 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.05 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.01 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.01 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.85 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.85 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.78 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.77 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.74 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.71 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.69 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.68 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.66 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.64 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.58 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.57 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.51 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.51 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.5 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.48 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.48 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.47 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.46 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.45 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.41 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.39 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.38 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.37 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.29 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.29 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.2 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.19 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 96.12 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.1 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.97 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.93 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.81 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.79 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.79 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.78 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.65 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.64 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.62 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.55 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.48 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.38 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.37 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.34 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.32 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.2 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.16 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.07 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.04 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.0 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 94.96 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.95 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.88 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.81 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.73 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.67 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.64 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.63 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 94.39 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.31 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.25 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.1 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.93 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 93.9 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.83 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.75 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.7 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.69 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.69 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.59 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 93.57 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.55 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.4 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.29 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.18 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.16 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.13 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.13 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.12 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.06 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.02 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 92.97 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.91 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.86 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.76 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.75 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.68 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 92.54 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.44 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 92.29 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.13 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.09 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.0 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.9 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.57 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.21 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.18 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.04 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.54 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 90.08 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.72 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.63 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 89.49 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 89.48 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.24 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.17 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.79 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 88.6 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.56 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.55 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 88.54 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 88.47 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 88.45 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.38 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.36 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.04 | |
| cd08819 | 88 | CARD_MDA5_2 Caspase activation and recruitment dom | 87.23 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 87.22 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.06 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 86.95 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.82 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 86.68 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 86.35 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 86.08 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.43 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 85.16 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 84.99 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.92 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 84.45 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 84.15 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 84.09 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 83.84 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 83.33 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.88 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 82.36 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 81.64 | |
| PF14689 | 62 | SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do | 81.6 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 81.33 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 81.12 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.01 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 80.95 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.78 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 80.57 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 80.24 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-61 Score=432.52 Aligned_cols=346 Identities=25% Similarity=0.405 Sum_probs=339.0
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
||..+|+.++.+|++.|+++.|.++|+.|.+.+ +.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 788999999999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH--cCCCccHHHHHHHHHH
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQ--IGVRPNAFVYNTLMDG 174 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~ 174 (369)
+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 5789999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHH
Q 036461 175 FCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERA 254 (369)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (369)
|++.|++++|.++|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 255 FKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...++.||..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 335 VLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 335 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
|+.||..+|+.++.+|.+.|++++|.+++++|.+
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999976
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=425.23 Aligned_cols=363 Identities=18% Similarity=0.304 Sum_probs=349.3
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.+ +.||..+|+.+|.+|++.|++++|.
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------v~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------VEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 4689999999999999999999999999999999999999999999988 7899999999999999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMD--QGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQ 158 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (369)
++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999976 57899999999999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhH
Q 036461 159 IGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIY 238 (369)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (369)
.|++|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 036461 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKS 318 (369)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (369)
+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh----c-------------------CchHHHHHHHHHhhcC
Q 036461 319 GRLKIAWELFRSLPRGVLIADVVTYNIMIHALCA----D-------------------GKMDKARDLFLDMEAK 369 (369)
Q Consensus 319 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~ 369 (369)
|+++.|.+++++|.+.|+.||..+|+.++..|.+ . +..++|+.+|++|.++
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999876542 1 2246789999999863
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=390.38 Aligned_cols=348 Identities=22% Similarity=0.334 Sum_probs=228.9
Q ss_pred hHHHHHHHHHHcC-CCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 2 EAAALFMKLRVFG-CEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 2 ~A~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
+|+++|+.|...+ +.||..+|+.++.+|.+.++++.|.+++..|.+.+ +.||..+|+.++..|++.|+++.|.
T Consensus 105 ~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g------~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG------FEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCcchHHHHHHHHHHhcCCCHHHHH
Confidence 5777888887654 56777888888888888888888888888887777 6777777888888888888888888
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|..++.++...|..+.+.+++..+.+.|
T Consensus 179 ~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g 254 (697)
T PLN03081 179 RLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254 (697)
T ss_pred HHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Confidence 88877753 57777888888888878888888888877777777777766666666666666666666666666666
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHH
Q 036461 161 VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNT 240 (369)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (369)
..||..+++.++.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.
T Consensus 255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ 330 (697)
T PLN03081 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330 (697)
T ss_pred CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 66666666666666666666666666666554 24555666666666666666666666666666666666666666
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGR 320 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (369)
++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCC
Confidence 666666666666666666666665555555555555555555555555555555554 3455555555555555555
Q ss_pred HHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 321 LKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
.++|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|++|.
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-54 Score=384.31 Aligned_cols=348 Identities=20% Similarity=0.324 Sum_probs=212.5
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
.|.+++..|.+.|+.||..+|+.++..|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|++
T Consensus 141 ~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~~~~t~n~li~~~~~~g~~~~A~~ 210 (697)
T PLN03081 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----------RNLASWGTIIGGLVDAGNYREAFA 210 (697)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----------CCeeeHHHHHHHHHHCcCHHHHHH
Confidence 5788999999999999999999999999999999999999998853 788999999999999999999999
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-------------------------------
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV------------------------------- 130 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------------------- 130 (369)
+|++|.+.|..|+..+|+.++.+|++.|..+.+.+++..+.+.|..||.
T Consensus 211 lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~ 290 (697)
T PLN03081 211 LFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT 290 (697)
T ss_pred HHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCCh
Confidence 9999988887777766655555555544444444444444444444444
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 036461 131 VSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGY 210 (369)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (369)
.+|+.++.+|.+.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|++++..+++.++.+|
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHH
Q 036461 211 CKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAV 290 (369)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 290 (369)
++.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.
T Consensus 371 ~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 371 SKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred HHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHH
Confidence 555555555555554432 3444555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 291 ELFRTLRI-LKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 291 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
++|+.|.+ .++.|+..+|+.++.+|++.|++++|.++++++. +.|+..+|+.++.+|...|+++.|..+++++
T Consensus 447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 55555543 3445555555555555555555555555554442 3445555555555555555555555555444
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=390.29 Aligned_cols=280 Identities=20% Similarity=0.319 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
+|+++|++|.+.|+.||..+|+.++.+|+..+++..+.+++..+.+.+ +.||..+++.|+.+|++.|+++.|.+
T Consensus 170 ~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~n~Li~~y~k~g~~~~A~~ 243 (857)
T PLN03077 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG------FELDVDVVNALITMYVKCGDVVSARL 243 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC------CCcccchHhHHHHHHhcCCCHHHHHH
Confidence 577777777777777777777666666666665555555555555555 45566666666666666666666666
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGV 161 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (369)
+|++|.. ||..+|+.++.+|++.|++++|+.+|++|...|+.||..||+.++.+|.+.|+.+.+.+++..+.+.|.
T Consensus 244 lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 244 VFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 6666643 355666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (369)
.||..+|+.++.+|++.|++++|.++|+.|. .||..+|+.++.+|.+.|++++|+++|++|.+.|+.||..||+.+
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 6666666666666666666666666666554 245555566666666666666666666655555555555555555
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 036461 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRT 295 (369)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (369)
+.+|.+.|+++.+.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|++
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 555555555555555555555555444444444444444444444444444433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-53 Score=386.99 Aligned_cols=352 Identities=19% Similarity=0.313 Sum_probs=299.8
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..+.+.+ +.||..+|+.|+.+|++.|++++|.
T Consensus 270 ~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~ 343 (857)
T PLN03077 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG------FAVDVSVCNSLIQMYLSLGSWGEAE 343 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC------CccchHHHHHHHHHHHhcCCHHHHH
Confidence 3688889999888889999999999999999999999999999988888 7889999999999999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
++|++|.. ||..+|+.++.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.+.++++.+.+.|
T Consensus 344 ~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 344 KVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred HHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 99998864 58888999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHH
Q 036461 161 VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNT 240 (369)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (369)
..|+..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|+.+|++|.. ++.||..||+.
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~ 494 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIA 494 (857)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHH
Confidence 999999999999999999999999999988863 5677888888888888888888888888875 47788887777
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCC------------------------------CcCHHHHHHHHHHHHhCCCHHHHH
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGV------------------------------AADTWAYRTFIDGLCKNGYIVEAV 290 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~a~ 290 (369)
++.+|.+.|+.+.+.+++..+.+.|+ .+|..+|+.++.+|++.|+.++|.
T Consensus 495 lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~ 574 (857)
T PLN03077 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAV 574 (857)
T ss_pred HHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHH
Confidence 77666666666666555555554443 456777888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcc-cCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 291 ELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLP-RGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|++|. +.|+.|+..+|+.++.+|.+.|++++|.+++++|.
T Consensus 575 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 575 ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 888888888888888888888888888888888888888888 67888888888888888888888888888888873
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.5e-28 Score=225.80 Aligned_cols=348 Identities=13% Similarity=0.049 Sum_probs=211.1
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHH
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 82 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 82 (369)
|+.+|+++.+.+ +.+...+..++..+.+.|++++|+.+++.+.... +.+...|..++.++...|++++|+..
T Consensus 552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-------PDSPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333344433332 2333344444444444444444444444444332 33344455555555555555555555
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 036461 83 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVR 162 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (369)
|+++.+.. +.+...+..+..++.+.|++++|...++++.+.. +.+..++..++..+...|++++|..+++.+.+.+ +
T Consensus 624 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 624 FKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 55554432 2234444455555555555555555555554432 2234445555555555555555555555555443 3
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 036461 163 PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 242 (369)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (369)
.+...+..+...+...|++++|.+.++.+...+ |+..++..+..++.+.|++++|...+.++.+..+ .+...+..+.
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la 777 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALA 777 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 344555555566666666666666666665543 3334555566666666666666666666666532 3556666677
Q ss_pred HHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 036461 243 IGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (369)
..+...|++++|..+|+++.+.. +.++..+..++..+...|+ .+|+..++++.... +.++..+..++..+...|+++
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 77777777777777777777654 3466677777777777777 66777777777654 445667777888888999999
Q ss_pred HHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 323 IAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
+|...|+++.+.+.. +..++..++.++.+.|++++|++++++|.+
T Consensus 855 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 855 RALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 999999999887544 888899999999999999999999998864
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-27 Score=219.53 Aligned_cols=349 Identities=15% Similarity=0.104 Sum_probs=224.0
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
+|++.|+++.+.+ +.+..++..+...+.+.|++++|...++++...+ +.+...+..++..+...|++++|..
T Consensus 517 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 517 DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-------PQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------ccchhHHHHHHHHHHHCCCHHHHHH
Confidence 3445555554443 3344455555555555555555555555555443 3344555555666666666666666
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGV 161 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (369)
+++.+.+. .+.+...|..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|..+++.+.+..
T Consensus 589 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 589 ILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 66665543 23455566666666666666666666666665543 2244455566666666666666666666666543
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (369)
+.+..++..++..+...|++++|.++++.+.... +.+...+..+...+...|++++|...|+++...+ |+..++..+
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l 742 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKL 742 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHH
Confidence 3345566666666666666666666666666554 4455566666677777777777777777777653 333556667
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 036461 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRL 321 (369)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 321 (369)
+.++...|++++|...+..+.+.. +.+...+..+...|...|++++|...|+++.+.. +++..+++.++..+...|+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-
Confidence 777777777777777777776653 4466677777777777888888888888777665 5567777777777777777
Q ss_pred HHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 322 KIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
++|+..++++.... +-++.++..+..++.+.|++++|.++|+++.+
T Consensus 820 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 820 PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66777777776642 22556677777888888888888888888764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-25 Score=186.31 Aligned_cols=306 Identities=14% Similarity=0.095 Sum_probs=243.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC---HHhHH
Q 036461 23 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN---VVTYN 99 (369)
Q Consensus 23 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 99 (369)
......+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+.
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 334455678899999999999999876 45677889999999999999999999999887532221 24677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCcc----HHHHHHHHHHH
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPN----AFVYNTLMDGF 175 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~ 175 (369)
.++..|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 88889999999999999999998753 44677888899999999999999999999887653322 22345677778
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHH
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF 255 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (369)
.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|..+++++...+......++..++.+|...|++++|.
T Consensus 191 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 191 LARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 88999999999999988764 44566777888889999999999999999987644333456788888999999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHhcc
Q 036461 256 KLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCK---SGRLKIAWELFRSLP 332 (369)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 332 (369)
..++.+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.
T Consensus 270 ~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 270 EFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 999998875 356666688888899999999999999988876 5777788877777664 558889999999888
Q ss_pred cCCcccCHH
Q 036461 333 RGVLIADVV 341 (369)
Q Consensus 333 ~~~~~~~~~ 341 (369)
+.++.|++.
T Consensus 346 ~~~~~~~p~ 354 (389)
T PRK11788 346 GEQLKRKPR 354 (389)
T ss_pred HHHHhCCCC
Confidence 776666654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-23 Score=183.16 Aligned_cols=353 Identities=15% Similarity=0.034 Sum_probs=277.5
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|+..|++.++. .|++..|..+..++.+.|++++|+..++...+.+ |.+...|..+..++...|++++|+
T Consensus 144 ~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 144 NKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------PDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3689999998875 5788899999999999999999999999999876 556889999999999999999998
Q ss_pred HHHHHhHhCCC-----------------------------CCCHHhHHHH------------------------------
Q 036461 81 ELFLKMKDENI-----------------------------NPNVVTYNSL------------------------------ 101 (369)
Q Consensus 81 ~~~~~~~~~~~-----------------------------~~~~~~~~~l------------------------------ 101 (369)
..|..+...+. +++...+..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 76654432110 0010000000
Q ss_pred HHHH------HhcCCHHHHHHHHHHHHhcC-C-CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 036461 102 IHGF------CYANDWNEAKCLFIEMMDQG-V-QPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMD 173 (369)
Q Consensus 102 ~~~~------~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (369)
+... ...+++++|...|++....+ . +.....+..+...+...|++++|+..++..++.. +.....|..+..
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~ 373 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRAS 373 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 0000 11257889999999998764 1 2244567888888899999999999999999874 335678888999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHH
Q 036461 174 GFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVER 253 (369)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (369)
++...|++++|...|+.+.... +.+..++..+...+...|++++|...|++.++..+. +...+..+...+.+.|++++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998875 566888999999999999999999999999987533 56677888899999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHcCCCHHHHHHH
Q 036461 254 AFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIR------AYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~ 327 (369)
|+..++...+.. +.+...+..+...+...|++++|+..|++........+.. .++..+..+...|++++|..+
T Consensus 452 A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 452 SMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999998763 4467889999999999999999999999998764221111 122222334457999999999
Q ss_pred HHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 328 FRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
+++..... +.+...+..+..++.+.|++++|+++|++..
T Consensus 531 ~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 531 CEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99988764 2345678899999999999999999998864
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-24 Score=179.26 Aligned_cols=301 Identities=14% Similarity=0.087 Sum_probs=249.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---hhhHHHHH
Q 036461 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPN---VVSFNVIM 137 (369)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 137 (369)
.........+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 333444556678899999999999999873 44677899999999999999999999999987532221 24677889
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCch----HHHHHHHHHHHhhc
Q 036461 138 NELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN----VFSYSILINGYCKN 213 (369)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 213 (369)
..+...|++++|..+|+.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998864 45678899999999999999999999999987642221 22456677788899
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 214 KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
|++++|...++++.+... .+...+..+...+...|++++|..+++++.+.+......++..++.+|...|++++|...+
T Consensus 194 ~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 194 GDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998643 2456778888999999999999999999987643333466788999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh---cCchHHHHHHHHHhhc
Q 036461 294 RTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCA---DGKMDKARDLFLDMEA 368 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~ 368 (369)
+++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.++++|.+
T Consensus 273 ~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 273 RRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 999876 466667788999999999999999999999875 6888888888877764 5689999999998875
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-23 Score=181.09 Aligned_cols=332 Identities=14% Similarity=0.059 Sum_probs=274.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
-...++..+.+.|++++|..+++...... +.+...+..++.+....|+++.|+..++++.... |.+...+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~ 115 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLL 115 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 35567788899999999999999999876 5567788888888889999999999999998863 447788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (369)
+...+...|++++|...++++.... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|+
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSR 192 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCC
Confidence 9999999999999999999998863 335678888999999999999999999988776433 33344333 34788999
Q ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHH----HHH
Q 036461 181 VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVER----AFK 256 (369)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~ 256 (369)
+++|...++.+......++...+..+...+...|++++|...++++...++. +...+..+...+...|++++ |..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 9999999999877643344445556677888999999999999999987543 67778889999999999985 899
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCc
Q 036461 257 LFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVL 336 (369)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 336 (369)
.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+..++...|++++|...|+++...
T Consensus 272 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~-- 347 (656)
T PRK15174 272 HWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE-- 347 (656)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 999998864 3467788999999999999999999999999875 556778888999999999999999999999875
Q ss_pred ccCH-HHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 337 IADV-VTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 337 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
.|+. ..+..+..++...|++++|++.|++..+
T Consensus 348 ~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 348 KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3443 3344457788999999999999998754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-22 Score=178.35 Aligned_cols=319 Identities=12% Similarity=0.038 Sum_probs=266.0
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|+.+++...... +-+..++..++.++...|++++|+..|+++.... |.+...+..+...+...|++++|+
T Consensus 59 ~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-------P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 59 DVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-------VCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred chhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHH
Confidence 46888888888874 5667778888888889999999999999999987 567888999999999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
..++++... .+.+...+..+..++...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+..
T Consensus 131 ~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 131 DLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999886 2446788889999999999999999999988766433 33344333 45788999999999999988775
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHH----HHHHHHHHHhCCCCCcHH
Q 036461 161 VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEG----ALSLYSEMLSKGIKPDVV 236 (369)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~ 236 (369)
..++......+..++...|++++|+..++++.... +.+...+..+...+...|++++ |...++++.+..+. +..
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~ 285 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVR 285 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHH
Confidence 44445555666788899999999999999999875 5677888889999999999986 89999999987543 677
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLC 316 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (369)
.+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.... +.+...+..+..++.
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~ 363 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALL 363 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 88999999999999999999999999864 3456778888999999999999999999998764 333344555677899
Q ss_pred cCCCHHHHHHHHHhcccC
Q 036461 317 KSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 317 ~~g~~~~a~~~~~~~~~~ 334 (369)
..|++++|...|+++.+.
T Consensus 364 ~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 364 QAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 999999999999998775
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-21 Score=185.37 Aligned_cols=355 Identities=12% Similarity=0.064 Sum_probs=229.8
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhH------------HHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY------------TTIID 68 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------------~~l~~ 68 (369)
++|+..|++.++.. |.+..++..+..++.+.|++++|+..|++..+..+. .++...| .....
T Consensus 286 ~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-----~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 286 GKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-----SSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ccchhHHHHHHHhhhHHHHHHHHH
Confidence 47899999999875 568889999999999999999999999999986621 1111112 22345
Q ss_pred HHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH-----------
Q 036461 69 GLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIM----------- 137 (369)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------- 137 (369)
.+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|+++.+... .+...+..+.
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHH
Confidence 6778999999999999998863 44677888899999999999999999999987632 2333333332
Q ss_pred -------------------------------HHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHH
Q 036461 138 -------------------------------NELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEE 186 (369)
Q Consensus 138 -------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (369)
..+...|++++|++.|++..+.. +.+...+..+...+.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 23445677777777777777664 3355666677777788888888888
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC------------------------------------
Q 036461 187 LFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG------------------------------------ 230 (369)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------------------ 230 (369)
.++++.... +.+...+..+...+...++.++|+..++.+....
T Consensus 517 ~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 887776543 3333333333333344444444444444322110
Q ss_pred ---CCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 036461 231 ---IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRA 307 (369)
Q Consensus 231 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 307 (369)
.+.+...+..+...+...|++++|+..++.+.+.. +.+...+..++..+...|++++|+..++.+.... +.+...
T Consensus 596 l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~ 673 (1157)
T PRK11447 596 LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNT 673 (1157)
T ss_pred HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHH
Confidence 12233344555666666666777777766666653 3355666666666666777777777776665442 334455
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcccCCcc--c---CHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 308 YNCLIDGLCKSGRLKIAWELFRSLPRGVLI--A---DVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 308 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
+..+..++...|++++|.++++++...... | +...+..+...+...|++++|++.|++..
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555666666677777777777666553211 1 12344455666666777777777666543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-22 Score=166.45 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
++|..+...+...|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~-------p~fida~inla~al~~~~~~~~a~~~~~~alq 178 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELK-------PKFIDAYINLAAALVTQGDLELAVQCFFEALQ 178 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcC-------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh
Confidence 344444444444455555555554444433 22344444444444444444444444444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-20 Score=169.56 Aligned_cols=355 Identities=12% Similarity=0.007 Sum_probs=266.4
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|+++|.+..... +.+...+..+...+.+.|++++|..+|+++.... |.+...+..++.++...|++++|+
T Consensus 32 ~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 32 AEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-------PQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 36788888887643 5566678999999999999999999999988876 566778888888999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHH-------
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLL------- 153 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------- 153 (369)
..++++.+. .+.+.. +..+..++...|+.++|+..++++.+..+. +...+..+..++...+..+.|+..+
T Consensus 104 ~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p 180 (765)
T PRK10049 104 VKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTP 180 (765)
T ss_pred HHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCH
Confidence 999999876 344666 888888999999999999999999886432 4555555666666556655444333
Q ss_pred ---------------------------------------HHHHHc-CCCccHH-HH----HHHHHHHHhcCChHHHHHHH
Q 036461 154 ---------------------------------------ELMIQI-GVRPNAF-VY----NTLMDGFCLTGRVNRAEELF 188 (369)
Q Consensus 154 ---------------------------------------~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~ 188 (369)
+.+.+. ...|+.. .+ ...+..+...|++++|+..|
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~ 260 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333322 1112111 11 11133456779999999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC---cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC
Q 036461 189 VSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP---DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG 265 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (369)
+.+.+.+.+........+..+|...|++++|+..|+++.+..... .......+..++...|++++|..+++.+.+..
T Consensus 261 ~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 261 QRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred HHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 999877522111222335778999999999999999988754221 13456667778899999999999999988753
Q ss_pred C-----------CcC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 036461 266 V-----------AAD---TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSL 331 (369)
Q Consensus 266 ~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 331 (369)
. .|+ ...+..+...+...|++++|+..++++.... |.+...+..++..+...|++++|+..++++
T Consensus 341 P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a 419 (765)
T PRK10049 341 PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKA 419 (765)
T ss_pred CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1 123 2345667788899999999999999998775 667889999999999999999999999999
Q ss_pred ccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 332 PRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 332 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
.... +.+...+..++..+...|++++|..+++++.+
T Consensus 420 l~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 420 EVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8863 23466777888889999999999999998875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-20 Score=166.64 Aligned_cols=334 Identities=15% Similarity=0.038 Sum_probs=261.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.+......+.+.|++++|+..|++..... |++..|..+..+|.+.|++++|++.++...+.. +.+...|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--------p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~ 199 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--------PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNR 199 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 35567788999999999999999999854 778899999999999999999999999999863 446788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-----------------------------CCChhhHHHHHHH------------
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQGV-----------------------------QPNVVSFNVIMNE------------ 139 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~~------------ 139 (369)
+..+|...|++++|+..|..+...+. +++...+..+...
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 99999999999999876654432110 0111111111000
Q ss_pred ------------------H------HhCCChhHHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036461 140 ------------------L------CKNGKMDEASRLLELMIQIG--VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMES 193 (369)
Q Consensus 140 ------------------~------~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (369)
. ...+++++|.+.|+...+.+ .+.....+..+...+...|++++|+..+++...
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 11256888999999988764 233456788888899999999999999999988
Q ss_pred cCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHH
Q 036461 194 MGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAY 273 (369)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (369)
.. +.....|..+...+...|++++|...|+++.+..+. +..++..+...+...|++++|...|+..++.. +.+...+
T Consensus 360 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~ 436 (615)
T TIGR00990 360 LD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSH 436 (615)
T ss_pred cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHH
Confidence 74 445678888999999999999999999999887533 67788999999999999999999999999874 3467778
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCH-----H-HHHHHH
Q 036461 274 RTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADV-----V-TYNIMI 347 (369)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~-~~~~l~ 347 (369)
..+..++.+.|++++|+..+++..... +.+...++.+...+...|++++|...|++........+. . .+...+
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 888999999999999999999998764 557889999999999999999999999998775322111 1 122222
Q ss_pred HHHHhcCchHHHHHHHHHhh
Q 036461 348 HALCADGKMDKARDLFLDME 367 (369)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~m~ 367 (369)
..+...|++++|.+++++..
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 33445799999999998864
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-22 Score=163.41 Aligned_cols=349 Identities=15% Similarity=0.092 Sum_probs=289.4
Q ss_pred ChHHHHHHHHHHcCCCcCHh-HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc-hhhHHHHHHHHHhcCChHH
Q 036461 1 MEAAALFMKLRVFGCEPNVF-TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYTTIIDGLCKEGFVDK 78 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 78 (369)
++|+..++.+++. .|+-. +|..+..++...|+.+.|.+.|....+.+ |+ .-....+...+-..|+.++
T Consensus 133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--------P~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--------PDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--------cchhhhhcchhHHHHhhcccch
Confidence 3688889998875 67776 79999999999999999999999999865 54 3444556666667899999
Q ss_pred HHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 036461 79 AKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQ 158 (369)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (369)
|...|.+.++.. +-=...|..|...+..+|+.-.|++.|++.....+. -...|..+...|...+.++.|...|.+...
T Consensus 203 a~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 203 AKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred hHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 999999988752 224567889999999999999999999999876422 356788899999999999999999998887
Q ss_pred cCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhH
Q 036461 159 IGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIY 238 (369)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (369)
.. +.....+..+...|...|..+-|+..+++..+.. +.-+..|+.+..++-..|++.+|.+.|.+.+..... .....
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam 357 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAM 357 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHH
Confidence 64 3456778888888999999999999999998875 556788999999999999999999999999987433 55678
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 036461 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKS 318 (369)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (369)
+.|...+...|.++.|..+|....+-. +--....+.+...|-+.|++++|+..|++.++.. +.-...++.+...|-..
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHh
Confidence 899999999999999999999988742 2235578889999999999999999999998764 33457889999999999
Q ss_pred CCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 319 GRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 319 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
|+.+.|.+.+.+++..+.. =...++.|...|..+|+..+|++-+++..
T Consensus 436 g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred hhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 9999999999999885322 35688899999999999999999988754
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-20 Score=178.61 Aligned_cols=316 Identities=11% Similarity=0.035 Sum_probs=214.5
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|++.|++.++.. |.+..++..+..++...|++++|++.|+++.+.. +.+...+..+...+. .++.++|+
T Consensus 368 ~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-------p~~~~a~~~L~~l~~-~~~~~~A~ 438 (1157)
T PRK11447 368 AQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-------PGNTNAVRGLANLYR-QQSPEKAL 438 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH-hcCHHHHH
Confidence 36888999998875 5677788889999999999999999999999876 344555555555543 23455555
Q ss_pred HHHHHhHhCCCC--------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHH
Q 036461 81 ELFLKMKDENIN--------PNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRL 152 (369)
Q Consensus 81 ~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (369)
.+++.+...... .....+..+...+...|++++|+..|++.++..+ -+...+..+...+...|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555443221000 0011233344445555555555555555554421 1334444455555555555555555
Q ss_pred HHHHHHcCCCccHHHHH--------------------------------------------HHHHHHHhcCChHHHHHHH
Q 036461 153 LELMIQIGVRPNAFVYN--------------------------------------------TLMDGFCLTGRVNRAEELF 188 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~~--------------------------------------------~l~~~~~~~~~~~~a~~~~ 188 (369)
++.+.+.. +.+...+. .+...+...|+.++|..++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 55554432 11222222 2234455566666666665
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCc
Q 036461 189 VSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA 268 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 268 (369)
+. .+.+...+..+...+.+.|++++|+..|+++.+..+. +...+..++..+...|++++|...++.+.+.. +.
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~ 669 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-ND 669 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CC
Confidence 51 2456667778889999999999999999999997543 67888999999999999999999999888753 33
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 269 DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE--L---DIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
+......+..++...|++++|.++++.+...... | +...+..+...+...|++++|...|++....
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667777888999999999999999999875322 1 2246666788899999999999999998753
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-18 Score=156.83 Aligned_cols=350 Identities=11% Similarity=0.021 Sum_probs=258.9
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHH
Q 036461 4 AALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 83 (369)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 83 (369)
+..++. .+.+ +.++....-.+.+....|+.++|++++.+..... +.+...+..+..++...|++++|.++|
T Consensus 2 ~~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-------~~~a~~~~~lA~~~~~~g~~~~A~~~~ 72 (765)
T PRK10049 2 LSWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-------QLPARGYAAVAVAYRNLKQWQNSLTLW 72 (765)
T ss_pred chhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455666 3333 5667777778888999999999999999998744 455667999999999999999999999
Q ss_pred HHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc
Q 036461 84 LKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRP 163 (369)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (369)
++..+. -|.+...+..++.++...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.
T Consensus 73 ~~al~~-~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~ 148 (765)
T PRK10049 73 QKALSL-EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQ 148 (765)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 999876 34567788889999999999999999999998873 33555 8888899999999999999999999875 33
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHH----------------------------------------------HHHhc-CC
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELFV----------------------------------------------SMESM-GC 196 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~----------------------------------------------~~~~~-~~ 196 (369)
+...+..+..++...+..++|+..++ .+.+. ..
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~ 228 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD 228 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc
Confidence 55565666667766666665554444 33221 00
Q ss_pred CchH-HHH----HHHHHHHhhcCChHHHHHHHHHHHhCCCC-CcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCc--
Q 036461 197 KHNV-FSY----SILINGYCKNKEIEGALSLYSEMLSKGIK-PDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA-- 268 (369)
Q Consensus 197 ~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 268 (369)
.|+. ..+ ...+..+...|++++|+..|+.+.+.+.+ |+. ....+..++...|++++|...++.+.+.....
T Consensus 229 ~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~ 307 (765)
T PRK10049 229 NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIAD 307 (765)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC
Confidence 1111 111 11123445678899999999998887532 332 22235678888999999999999887643211
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 269 -DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY-----------ELD---IRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 269 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
.......+..++...|++++|...++.+..... .|+ ...+..++..+...|++++|+..++++..
T Consensus 308 ~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 308 LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 134566677778899999999999998886531 122 23456677788899999999999999887
Q ss_pred CCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 334 GVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 334 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
.. +.+...+..++..+...|++++|++.+++..+
T Consensus 388 ~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 388 NA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred hC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 63 44677888889999999999999999988654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-17 Score=149.46 Aligned_cols=194 Identities=11% Similarity=0.070 Sum_probs=132.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC-----CCcHHhHHHHHHHHH
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI-----KPDVVIYNTLFIGLF 246 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~ 246 (369)
+-++...|++.++++.++.+...+.+....+-..+..+|...+.+++|..+++.+..... .++......|..++.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 335556677777777777777666554556667777888888888888888888766431 223333466777788
Q ss_pred hcccHHHHHHHHHHHHHcCC-----------CcC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036461 247 EIHQVERAFKLFDEMQRHGV-----------AAD---TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLI 312 (369)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 312 (369)
..+++++|..+++.+.+... .|+ ......++..+...|++.+|.+.++.+.... |-|......+.
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A 457 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALA 457 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 88888888888888776311 122 1233445666777888888888888887665 66777888888
Q ss_pred HHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 313 DGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 313 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
..+...|.+.+|...++...... +-+..+....+.++...|++++|..+.+++.
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 88888888888888886665542 2245566677777778888888877776554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-16 Score=143.90 Aligned_cols=347 Identities=12% Similarity=0.022 Sum_probs=254.0
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC---hHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF---VDK 78 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~ 78 (369)
+|.+.+..|.+.. +-+......+.-...+.|+.++|.++|+........ ...+......++..|.+.+. ..+
T Consensus 360 ~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 360 EALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD----ARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc----cccCHHHHHHHHHHHHhCCcccchHH
Confidence 4556666676652 457778888888889999999999999998873211 12344455577888877765 333
Q ss_pred HHHH----------------------HHHhHhC-C-CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh
Q 036461 79 AKEL----------------------FLKMKDE-N-INP--NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVS 132 (369)
Q Consensus 79 a~~~----------------------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (369)
+..+ ++..... + .++ +...|..+..++.. +++++|...+.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 3333 1111111 1 234 66777888877776 7888899988887765 355444
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK 212 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (369)
...+...+...|++++|...++.+... +|+...+..+..++.+.|++++|...+++..+.. +.....+..+......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence 444555567899999999999987664 3444556677788889999999999999998765 3344444444445556
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHH
Q 036461 213 NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVEL 292 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (369)
.|++++|...+++..+.. |+...+..+..++.+.|++++|...+++..+.. +.+...+..+..++...|++++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 699999999999998864 467788888999999999999999999998874 44677888888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccC-HHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 293 FRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIAD-VVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
++++.+.. |.+...+..+..++...|++++|...|++..+. .|+ ..+.........+..+++.|.+-+++
T Consensus 666 l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 666 LERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99998875 567888899999999999999999999999875 343 34555566666777777777776654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-16 Score=135.50 Aligned_cols=356 Identities=16% Similarity=0.118 Sum_probs=233.6
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|.+++.++++.. |.+..+|.+|...|-+.|+.+++...+-.+...+ |.|...|..+.....+.|++++|.
T Consensus 156 eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-------p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 156 EEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-------PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHhcccHHHHH
Confidence 36777777777775 6677778888888888888888777766666655 556677777777777788888888
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh----HHHHHHHHHhCCChhHHHHHHHHH
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVS----FNVIMNELCKNGKMDEASRLLELM 156 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~ 156 (369)
-.|.++++.. |++...+-.-...|-+.|+...|...|.++....++.|..- -..++..+...++.+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888877763 44555555666777777888888888877776643222222 223345556666667777777766
Q ss_pred HHcC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---------------------------CCchHHHHHHHHH
Q 036461 157 IQIG-VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG---------------------------CKHNVFSYSILIN 208 (369)
Q Consensus 157 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~ 208 (369)
...+ -..+...++.++..+.+...++.+........... ..++..+ ..++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 6521 12344556677777777777777777766655411 1122222 12233
Q ss_pred HHhhcCChHHHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCH
Q 036461 209 GYCKNKEIEGALSLYSEMLSKG--IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI 286 (369)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 286 (369)
++.+....+....+........ +.-+...|.-+..++...|.+.+|..++..+......-+...|-.+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3444444444444555555544 33345567777888888888888888888887765445566778888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC--------CcccCHHHHHHHHHHHHhcCchHH
Q 036461 287 VEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG--------VLIADVVTYNIMIHALCADGKMDK 358 (369)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~ 358 (369)
++|.+.|+.++... |.+..+--.|...+.+.|+.++|.+++..+... +..|+..........+.+.|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 88888888887765 556667777777788888888888888875432 234455555566667777788777
Q ss_pred HHHHHHHhh
Q 036461 359 ARDLFLDME 367 (369)
Q Consensus 359 A~~~~~~m~ 367 (369)
-+...-.|.
T Consensus 545 fi~t~~~Lv 553 (895)
T KOG2076|consen 545 FINTASTLV 553 (895)
T ss_pred HHHHHHHHH
Confidence 655554443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.5e-16 Score=140.53 Aligned_cols=321 Identities=13% Similarity=0.013 Sum_probs=246.4
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC--CCCCCHHhHHHHHHHHHhc
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE--NINPNVVTYNSLIHGFCYA 108 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 108 (369)
..+...++...+..+.+.. +-+......+.....+.|+.++|.++|+..... +..++......++..|.+.
T Consensus 354 ~~~~~~~~~~~~~~~y~~~-------~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 426 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQE-------PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESH 426 (987)
T ss_pred ccCchhHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC
Confidence 3466777777777777764 456777777778888999999999999998762 1223444555778888777
Q ss_pred CC---HHHHHHH----------------------HHHHHhc-CC-CC--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 109 ND---WNEAKCL----------------------FIEMMDQ-GV-QP--NVVSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 109 ~~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
+. ..++..+ ++..... +. ++ +...|..+..++.. ++..+|...+......
T Consensus 427 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~ 505 (987)
T PRK09782 427 PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR 505 (987)
T ss_pred CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh
Confidence 65 3333333 1122111 11 33 56677777777776 8899999988888776
Q ss_pred CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHH
Q 036461 160 GVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYN 239 (369)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (369)
. |+......+...+...|++++|...++++... +|+...+..+..++.+.|+.++|...+++..+.++. +...+.
T Consensus 506 ~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~ 580 (987)
T PRK09782 506 Q--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYW 580 (987)
T ss_pred C--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHH
Confidence 3 55544444556667899999999999998765 455555667788899999999999999999987522 333444
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 036461 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSG 319 (369)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (369)
.+.......|++++|...+++..+.. |+...+..+..++.+.|++++|...+++..... |.+...++.+..++...|
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 44445556699999999999999864 578889999999999999999999999999886 667888999999999999
Q ss_pred CHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 320 RLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
++++|+..+++..+.. +-+...+..+..++...|++++|+..|++..+
T Consensus 658 ~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 658 DIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999998863 33678899999999999999999999998754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-15 Score=137.00 Aligned_cols=352 Identities=11% Similarity=0.021 Sum_probs=251.6
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
+|+..|++..+.. |.++.....++..+...|+.++|+..+++..... +........++..+...|++++|++
T Consensus 52 ~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-------n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 52 PVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-------NISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-------CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6888899998863 3332233388888889999999999999988422 2334444445678888999999999
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGV 161 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (369)
+|+++.+.. |.++..+..++..+...++.++|+..++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 124 ly~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~- 199 (822)
T PRK14574 124 LWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA- 199 (822)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-
Confidence 999998874 346777778888999999999999999999876 4555555445445545666666999999999885
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHH------------------------------------------------h
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSME------------------------------------------------S 193 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------------------------------------~ 193 (369)
+.+...+..+..++.+.|-...|.++..+-. .
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 4466676777777776666555555443221 1
Q ss_pred c-C-CCchHH----HHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC--
Q 036461 194 M-G-CKHNVF----SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG-- 265 (369)
Q Consensus 194 ~-~-~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 265 (369)
. + .++... +..-.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|..++..+....
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 0 0 011111 1122344566778888899999988887755445577788889999999999999999886643
Q ss_pred ---CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHHcCCCHHHHHHHH
Q 036461 266 ---VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY-----------ELDI---RAYNCLIDGLCKSGRLKIAWELF 328 (369)
Q Consensus 266 ---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~a~~~~ 328 (369)
.+++......|..++...+++++|..+++.+.+... .||. .....++..+...|+..+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 122344456788888999999999999998886311 1221 23344567788889999999999
Q ss_pred HhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 329 RSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
+++.... +-|......+...+...|.+.+|.+.++..
T Consensus 440 e~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 440 EDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9987753 448888888889999999999999988654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-15 Score=120.96 Aligned_cols=295 Identities=17% Similarity=0.255 Sum_probs=201.5
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcC--Chh-HHHHHHHHHHcCCCCCCc-------------ccccchhhHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTG--HTI-VALNLFEEMANGNGEFGV-------------VCKPNTVTYTT 65 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--~~~-~A~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 65 (369)
++.-+|+.|+..|++.++..-..|++.-+-.+ ++. .-++.|-.|...+...+. ..|.+..++..
T Consensus 133 Ds~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s~ 212 (625)
T KOG4422|consen 133 DSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVSI 212 (625)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHHH
Confidence 57779999999999999998888777544332 222 223344444444432222 13556789999
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC
Q 036461 66 IIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGK 145 (369)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (369)
+|.++++--..+.|.++|++......+.+..+||.+|.+-.-.. -.+++.+|.+..+.||..|+|.++++..+.|+
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~ 288 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGK 288 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcc
Confidence 99999999999999999999988878889999999987654332 27889999999999999999999999999998
Q ss_pred hhH----HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHH-HHHHHHHHHh----cCC----CchHHHHHHHHHHHhh
Q 036461 146 MDE----ASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNR-AEELFVSMES----MGC----KHNVFSYSILINGYCK 212 (369)
Q Consensus 146 ~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~ 212 (369)
++. |.+++.+|.+.|+.|...+|..+|..+.+-++..+ +..++.++.. ..+ +.+...|...+..|.+
T Consensus 289 F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~ 368 (625)
T KOG4422|consen 289 FEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSS 368 (625)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHH
Confidence 764 56788899999999999999999999888888644 4444444432 211 2344456666677777
Q ss_pred cCChHHHHHHHHHHHhCC----CCCc---HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 213 NKEIEGALSLYSEMLSKG----IKPD---VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
..+.+-|..+..-+.... +.|+ ..-|..+....++....+....+|+.|+-.-.-|+..+...++++..-.|.
T Consensus 369 l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~ 448 (625)
T KOG4422|consen 369 LRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANR 448 (625)
T ss_pred hhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCc
Confidence 777777766655444321 1222 122344445555555566666666666554445555565666666655666
Q ss_pred HHHHHHHHHHHHHcC
Q 036461 286 IVEAVELFRTLRILK 300 (369)
Q Consensus 286 ~~~a~~~~~~~~~~~ 300 (369)
++-..++|..++..|
T Consensus 449 ~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 449 LEVIPRIWKDSKEYG 463 (625)
T ss_pred chhHHHHHHHHHHhh
Confidence 665555555554443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.5e-16 Score=121.65 Aligned_cols=341 Identities=16% Similarity=0.225 Sum_probs=258.9
Q ss_pred CCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036461 15 CEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN 94 (369)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (369)
.|.++.++..+|.++++--..+.|.+++++..... .+.+..+||.+|.+-.-.. ..++..+|....+.||
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK------GKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPN 272 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh------heeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCc
Confidence 36788899999999999999999999999988877 6889999999998765332 3788999999889999
Q ss_pred HHhHHHHHHHHHhcCCHHHH----HHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhH-HHHHHHHHHHc----C----C
Q 036461 95 VVTYNSLIHGFCYANDWNEA----KCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDE-ASRLLELMIQI----G----V 161 (369)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~----~ 161 (369)
..|+|.++.+..+.|+++.| .+++.+|.+.|+.|+..+|..++..+.+.++..+ +..++.++... . .
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 99999999999999987764 5677888999999999999999999998887644 55555555432 1 1
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCch---HHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG----CKHN---VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 234 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (369)
+.+...|...+..|.+..+.+-|.++..-+.... +.++ ..-|..+....++....+.....|+.|+.+-+-|+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 2345567778889999999999998877665331 2233 23356677777888889999999999999888889
Q ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC-C--------HHH-----HHHHH-------
Q 036461 235 VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG-Y--------IVE-----AVELF------- 293 (369)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~--------~~~-----a~~~~------- 293 (369)
..+...++++....+.++-.-++|.+++..|...+......++..+++.. . +.. |..++
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~ 512 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP 512 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999988775555555555555555443 1 111 11111
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCC----cccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 294 RTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGV----LIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
.++. .........+.++-.+.+.|+.++|.++|..+.+++ ..|......-++..-.+.++...|+.+++-|.
T Consensus 513 ~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 513 IRQR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1122 224566778888888999999999999999885543 22333444456667778889999988887653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-16 Score=132.98 Aligned_cols=335 Identities=16% Similarity=0.124 Sum_probs=262.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
........+.-.|+.++|..++.++++.+ |.+...|..|..+|-..|+.+++...+-.+... .|-|...|..
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ 212 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD-------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKR 212 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHH
Confidence 33444445556699999999999999987 678999999999999999999999988766654 3447799999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHH----HHHHHHHHHH
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAF----VYNTLMDGFC 176 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~ 176 (369)
+.....+.|.+++|.-.|.+.++.. +++...+-.-+..|-+.|+...|...|.++.....+.+.. .-...++.+.
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999884 4466666677888999999999999999999875433322 2334566777
Q ss_pred hcCChHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc---------------------
Q 036461 177 LTGRVNRAEELFVSMESMG-CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD--------------------- 234 (369)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------------- 234 (369)
..++-+.|.+.++.....+ -..+...++.++..+.+...++.+.............+|
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 8888899999998887632 234556678888999999999999988887776222221
Q ss_pred ------HHhHHHHHHHHHhcccHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Q 036461 235 ------VVIYNTLFIGLFEIHQVERAFKLFDEMQRHG--VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIR 306 (369)
Q Consensus 235 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 306 (369)
... -.++.++......+....+.....+.. +.-+...|..+..+|.+.|.+.+|+.++..+.....-.+..
T Consensus 372 ~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 111 134444555666666666666666665 33456789999999999999999999999999775455678
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 307 AYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 307 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
+|..++.+|...|.+++|.+.|+.++... +.+...--+|...+.+.|+.++|.+.++.|
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 99999999999999999999999998862 224556667888899999999999999875
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-16 Score=130.53 Aligned_cols=281 Identities=14% Similarity=0.055 Sum_probs=220.8
Q ss_pred cCChHHHHHHHHHhHhCCCCCCHHhHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH--HHHHHHHhCCChhHH
Q 036461 73 EGFVDKAKELFLKMKDENINPNVVTYN-SLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFN--VIMNELCKNGKMDEA 149 (369)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 149 (369)
.|+++.|.+.+....+.. +++..+. ....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999999888876642 2333333 3345558899999999999999875 44543332 346788899999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchH-------HHHHHHHHHHhhcCChHHHHHH
Q 036461 150 SRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNV-------FSYSILINGYCKNKEIEGALSL 222 (369)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 222 (369)
...++.+.+.. +-++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999886 457888899999999999999999999999987644322 1233334444445566666777
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 036461 223 YSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE 302 (369)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 302 (369)
++.+.+. .+.++.....+...+...|+.++|..++++..+. +|++.... +.+....++.+++....+...+.. |
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhC-C
Confidence 7766543 3447778889999999999999999999999884 45654332 333345699999999999998775 6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 303 LDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 303 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
.|+..+..+...|.+.|++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++-
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67788899999999999999999999999985 789999999999999999999999999875
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-16 Score=131.39 Aligned_cols=290 Identities=12% Similarity=0.039 Sum_probs=215.9
Q ss_pred HhcCChHHHHHHHHHhHhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHH
Q 036461 71 CKEGFVDKAKELFLKMKDENINPN-VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEA 149 (369)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 149 (369)
...|+++.|.+.+.+..+. .|+ ...+-....+..+.|+++.|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4579999999999988775 344 3444555688888999999999999987653222222334457888999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHH---hhcCChHHHHHHHHHH
Q 036461 150 SRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGY---CKNKEIEGALSLYSEM 226 (369)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~ 226 (369)
...++.+.+.. |-+..+...+...+...|++++|.+.+..+.+.+..++......-..++ ...+..+++...+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999986 4477888899999999999999999999999886433332211111222 3333333344455555
Q ss_pred HhCCC---CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 227 LSKGI---KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWA---YRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 227 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
.+..+ +.+...+..+...+...|+.++|...+++..+.. |+... ...........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 54422 1377888889999999999999999999999864 33321 1112222344578899999998888764
Q ss_pred CCCCH--HHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 301 YELDI--RAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 301 ~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
+.|+ ....++.+.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5566 6778999999999999999999995444334789998999999999999999999999875
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-19 Score=143.34 Aligned_cols=261 Identities=18% Similarity=0.159 Sum_probs=82.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC
Q 036461 65 TIIDGLCKEGFVDKAKELFLKMKDEN-INPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKN 143 (369)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (369)
.+...+.+.|++++|++++++..... .+.+...|..+...+...++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666667777777777775543332 1234444555555666667777777777777665422 44455555555 566
Q ss_pred CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhhcCChHHHHHH
Q 036461 144 GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG-CKHNVFSYSILINGYCKNKEIEGALSL 222 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (369)
+++++|.+++....+.. +++..+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 67777777666555432 344555566666667777777777776655322 234555666666666667777777777
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 036461 223 YSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE 302 (369)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 302 (369)
+++.++..+. |......++..+...|+.+++..++....+.. +.|+..+..+..++...|+.++|...+++..... +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 7776665322 45556666666666666666666666655542 3344455666666666677777777776666554 4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 303 LDIRAYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 303 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
.|+.....++.++...|+.++|..+.+++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 466666666666666777776666665554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-15 Score=128.76 Aligned_cols=283 Identities=14% Similarity=0.085 Sum_probs=222.4
Q ss_pred cCChhHHHHHHHHHHcCCCCCCcccccchhhHHH-HHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHH--HHHHHHHhc
Q 036461 32 TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTT-IIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN--SLIHGFCYA 108 (369)
Q Consensus 32 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~ 108 (369)
.|+++.|.+.+....+.. +++..+.. ......+.|+++.|.+.+.++.+. .|+..... .....+...
T Consensus 97 eGd~~~A~k~l~~~~~~~--------~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--------EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--------cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHC
Confidence 599999998888866643 23333333 355558899999999999999875 45554333 346788999
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccH-------HHHHHHHHHHHhcCCh
Q 036461 109 NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNA-------FVYNTLMDGFCLTGRV 181 (369)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~ 181 (369)
|+++.|...++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.
T Consensus 167 g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 167 NENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999875 336778889999999999999999999999988654322 1333344444455566
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHH
Q 036461 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 261 (369)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (369)
+...++++.+...- +.++.....+...+...|+.++|...+++..+. .|+.... ++.+....++++++.+..+..
T Consensus 246 ~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 246 EGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 77777777775442 567888889999999999999999999999885 4454322 333444569999999999999
Q ss_pred HHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 262 QRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
.+.. +-|+..+..+...|.+.+++++|...|+.+.+. .|+...+..+...+.+.|+.++|..++++...
T Consensus 321 lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8874 457778889999999999999999999999976 68999999999999999999999999998754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-19 Score=143.19 Aligned_cols=262 Identities=15% Similarity=0.072 Sum_probs=115.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQG-VQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT 178 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (369)
.+...+.+.|++++|++++++..... .+.+...|..+...+...++++.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 56888899999999999997665543 2335556666777778889999999999999987633 66677777777 789
Q ss_pred CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcccHHHHHHH
Q 036461 179 GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG-IKPDVVIYNTLFIGLFEIHQVERAFKL 257 (369)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 257 (369)
+++++|.+++....+. .+++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887655 3566778888899999999999999999987643 345777888999999999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcc
Q 036461 258 FDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLI 337 (369)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 337 (369)
+++..+.. |.|......++..+...|+.+++..+++...... +.++..+..+..+|...|++++|+..|++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 99999874 3367888899999999999999999999888765 6677888999999999999999999999998753 3
Q ss_pred cCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 338 ADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
.|+.+...+..++...|+.++|.++.++..+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4888889999999999999999999887654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-15 Score=129.26 Aligned_cols=298 Identities=12% Similarity=0.080 Sum_probs=218.0
Q ss_pred HHHHHHH--HhcCChhHHHHHHHHHHcCCCCCCcccccch-hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH--Hh
Q 036461 23 NTLINGL--CRTGHTIVALNLFEEMANGNGEFGVVCKPNT-VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV--VT 97 (369)
Q Consensus 23 ~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 97 (369)
..+.+++ ...|+++.|.+.+.+..+.. |++ ..+.....+....|+++.|.+.+.+..+.. |+. ..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~--------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~ 155 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHA--------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILV 155 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHH
Confidence 3344433 45799999999999887754 443 444556788888999999999999987653 343 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH--
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF-- 175 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 175 (369)
.......+...|+++.|...++.+.+..+ -+...+..+...+...|+++++.+.+..+.+.+..+..........++
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIG 234 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 44457888899999999999999998853 366788899999999999999999999999987543332211111221
Q ss_pred -HhcCChHHHHHHHHHHHhcC---CCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhH-HHHHHHHHhccc
Q 036461 176 -CLTGRVNRAEELFVSMESMG---CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIY-NTLFIGLFEIHQ 250 (369)
Q Consensus 176 -~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 250 (369)
...+..+++.+.+..+.... .+.++..+..+...+...|+.++|...+++..+..+......+ ..........++
T Consensus 235 ~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 235 LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC
Confidence 22333333344554444332 1237788889999999999999999999999997443221111 112222234577
Q ss_pred HHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 036461 251 VERAFKLFDEMQRHGVAADT--WAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELF 328 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 328 (369)
.+.+.+.++...+.. +-|+ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|
T Consensus 315 ~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 315 NEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred hHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888999998888753 3355 6777899999999999999999996544444789888999999999999999999999
Q ss_pred Hhcc
Q 036461 329 RSLP 332 (369)
Q Consensus 329 ~~~~ 332 (369)
++..
T Consensus 394 ~~~l 397 (409)
T TIGR00540 394 QDSL 397 (409)
T ss_pred HHHH
Confidence 9854
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.5e-16 Score=123.05 Aligned_cols=350 Identities=15% Similarity=0.138 Sum_probs=180.1
Q ss_pred hHHHHHHHHHHcCCCcC------HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC
Q 036461 2 EAAALFMKLRVFGCEPN------VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF 75 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 75 (369)
+|+++|+-.+.. .|+ ....+.+.-.+.+.|+++.|+..|+...... ||..+-..|+-++...|+
T Consensus 255 kaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--------pn~~a~~nl~i~~f~i~d 324 (840)
T KOG2003|consen 255 KAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--------PNFIAALNLIICAFAIGD 324 (840)
T ss_pred HHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--------ccHHhhhhhhhhheecCc
Confidence 456666555443 222 2244555556778899999999999888754 777766666767777888
Q ss_pred hHHHHHHHHHhHhCCCCCCH------------HhHHH-----HHHHHHhcC--CHHHHHHHHHHHHhcCCCCChh-----
Q 036461 76 VDKAKELFLKMKDENINPNV------------VTYNS-----LIHGFCYAN--DWNEAKCLFIEMMDQGVQPNVV----- 131 (369)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~------------~~~~~-----l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~----- 131 (369)
.++..+.|.+|+.-...+|. ...+. .+.-.-+.+ +-++++-.-.+++.--+.|+-.
T Consensus 325 ~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dw 404 (840)
T KOG2003|consen 325 AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDW 404 (840)
T ss_pred HHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHH
Confidence 99999999988764322221 11111 111111111 1111111111111111111100
Q ss_pred --------hH--------HHHHHHHHhCCChhHHHHHHHHHHHcCCCc--------------------------------
Q 036461 132 --------SF--------NVIMNELCKNGKMDEASRLLELMIQIGVRP-------------------------------- 163 (369)
Q Consensus 132 --------~~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------- 163 (369)
.+ ..-...+.+.|+++.|.+++.-+.+..-+.
T Consensus 405 cle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln 484 (840)
T KOG2003|consen 405 CLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN 484 (840)
T ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc
Confidence 00 011224555666666665555444332111
Q ss_pred ----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHH
Q 036461 164 ----NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYN 239 (369)
Q Consensus 164 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (369)
+......-.+.....|++++|.+.+++.......-....| .+.-.+-..|+.++|++.|-++..- ...+..+..
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~ 562 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLV 562 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHH
Confidence 1111111111223345666666666666544311111122 2223344556666666666555432 112444555
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 036461 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSG 319 (369)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (369)
.+...|....++..|++++.+.... ++.|+..+..+...|-+.|+-..|.+.+-.--. -++-+..+...|..-|....
T Consensus 563 qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhH
Confidence 5566666666666666666555543 445566666666666666666666665443322 12445666666666666666
Q ss_pred CHHHHHHHHHhcccCCcccCHHHHHHHHHHH-HhcCchHHHHHHHHHhh
Q 036461 320 RLKIAWELFRSLPRGVLIADVVTYNIMIHAL-CADGKMDKARDLFLDME 367 (369)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~ 367 (369)
-++.++..|++..- +.|+..-|..++..| .+.|++++|.+++++..
T Consensus 641 f~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 641 FSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred HHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 66666666666543 356666666655433 44666666666666543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-15 Score=131.78 Aligned_cols=333 Identities=15% Similarity=0.113 Sum_probs=191.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC----ChHHHHHHHHHhHhCCCCCCHHh
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG----FVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
+.-+...+.+.|+++.+...|+.+.+.. |.+..+...|...|...+ ..+.|..++.+.... .+.|...
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a 416 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEA 416 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHH
Confidence 3344455555555555555555555543 334445555555554443 334444454444443 2335555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc---CCCc------c
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMM----DQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI---GVRP------N 164 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~------~ 164 (369)
|..+...+....-+.. +..|..+. ..+..+.+...|.+.......|++..|...|...... ...+ +
T Consensus 417 ~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~ 495 (1018)
T KOG2002|consen 417 WLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN 495 (1018)
T ss_pred HHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence 5555555544433332 44444332 2333455666677777777777777777777666544 1111 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC-CC-----------
Q 036461 165 AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG-IK----------- 232 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~----------- 232 (369)
..+-..+....-..++++.|.+.|..+.+.. |.-+..|..++......+...+|...+.++...+ ..
T Consensus 496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 2222334445555566666666666665542 2223333333322233344445555555444321 11
Q ss_pred -----------------------CcHHhHHHHHHHHHh------------cccHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 036461 233 -----------------------PDVVIYNTLFIGLFE------------IHQVERAFKLFDEMQRHGVAADTWAYRTFI 277 (369)
Q Consensus 233 -----------------------~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 277 (369)
+|..+...|...|.. .+..++|+++|..+++.. +.|...-+.+.
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIg 653 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIG 653 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchh
Confidence 233333334443321 234677888888887764 45777777888
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCC-cccCHHHHHHHHHHHHhcCch
Q 036461 278 DGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGV-LIADVVTYNIMIHALCADGKM 356 (369)
Q Consensus 278 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 356 (369)
.+++..|++.+|..+|.+..+.. .....+|-.++.+|..+|++..|++.|+...+.- ...++.+...|.+++.+.|++
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 88888888888888888888764 3456788888888888888888888888776532 334677888888888888888
Q ss_pred HHHHHHHHHh
Q 036461 357 DKARDLFLDM 366 (369)
Q Consensus 357 ~~A~~~~~~m 366 (369)
.+|.+.+...
T Consensus 733 ~eak~~ll~a 742 (1018)
T KOG2002|consen 733 QEAKEALLKA 742 (1018)
T ss_pred HHHHHHHHHH
Confidence 8888876554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-14 Score=114.15 Aligned_cols=335 Identities=12% Similarity=0.067 Sum_probs=226.3
Q ss_pred CCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHH---------------------------
Q 036461 15 CEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTII--------------------------- 67 (369)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------------------------- 67 (369)
...|...+....-.+.+.|....|++.|.......+ -.-.+|..|.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-------~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-------WFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFF 232 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-------cchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHH
Confidence 345555555555567778888899998888776542 2222222222
Q ss_pred --HHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhC
Q 036461 68 --DGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ--PNVVSFNVIMNELCKN 143 (369)
Q Consensus 68 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 143 (369)
.++....+.+++++-.+.....|.+-+...-+....+.....++++|+.+|+++.+..+- -|..+|+.++-.-..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~- 311 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND- 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh-
Confidence 233333455566666666666666555544444555556667777777777777765211 134455444332211
Q ss_pred CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHH
Q 036461 144 GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLY 223 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (369)
+. +..-+-+.....+ +-.+.|+..+.+-|.-.++.++|...|++..+.+ +....+|+.+..-|....+...|+.-+
T Consensus 312 -~s-kLs~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 312 -KS-KLSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred -hH-HHHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 11 1111111111111 2344566677778888888999999999998886 566778888888899999999999999
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 036461 224 SEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYEL 303 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 303 (369)
+.+++-++. |...|-.|.++|...+.+.=|+-.|++..... +.|+..|..++.+|.+.++.++|+..|.+....+ ..
T Consensus 388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 999987544 88888999999999999999999999888863 4578899999999999999999999999988876 55
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHhcccC----C-ccc-CHHHHHHHHHHHHhcCchHHHHHHHH
Q 036461 304 DIRAYNCLIDGLCKSGRLKIAWELFRSLPRG----V-LIA-DVVTYNIMIHALCADGKMDKARDLFL 364 (369)
Q Consensus 304 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 364 (369)
+...+..|+..|-+.++.++|...|++.++. | +.| ......-|..-+.+.+++++|..+..
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 7788899999999999999998888776541 2 222 12233335566777888888766443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-15 Score=127.43 Aligned_cols=284 Identities=17% Similarity=0.134 Sum_probs=187.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhC---CCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDE---NINPNV------VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV 130 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 130 (369)
+...|.+...+...|+++.|...|...... ...++. .+-..+..+.-..++.+.|.+.|..+.... +.-.
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YI 530 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYI 530 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhH
Confidence 445555555555555555555555554432 011111 122223344444455555555555555441 1122
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Q 036461 131 VSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG-CKHNVFSYSILING 209 (369)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 209 (369)
..|..++......+...+|...+....... ..++..+..+...+.+...+..|.+-|..+.+.. ..+|..+...|...
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 233333322233455666666666666543 3456666667777777777777777766665432 13566666677776
Q ss_pred Hhh------------cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 036461 210 YCK------------NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFI 277 (369)
Q Consensus 210 ~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 277 (369)
|.+ .+..++|+.+|.++++..+. |...-+.+...++..|++..|..+|..+.+... -...+|..+.
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNla 687 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLA 687 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHH
Confidence 653 24578899999999987544 777788899999999999999999999998743 3556889999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHH
Q 036461 278 DGLCKNGYIVEAVELFRTLRIL-KYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMI 347 (369)
Q Consensus 278 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 347 (369)
.+|...|++..|+++|+...+. ....++.+...|.+++...|.+.+|.+.+.......+.-....||..+
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 9999999999999999987654 445688899999999999999999999998888764443445555444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-14 Score=111.14 Aligned_cols=285 Identities=15% Similarity=0.153 Sum_probs=226.1
Q ss_pred cCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh------hHHHHHHHHHhCCCh
Q 036461 73 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVV------SFNVIMNELCKNGKM 146 (369)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~ 146 (369)
.++.++|.++|-+|.+.. +.+..+..+|.+.|-+.|..+.|+++.+.+..+ ||.. ....+..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 478999999999999852 335666778999999999999999999999875 3332 334466778889999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCch----HHHHHHHHHHHhhcCChHHHHHH
Q 036461 147 DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN----VFSYSILINGYCKNKEIEGALSL 222 (369)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~ 222 (369)
+.|..+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+. ...|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998865 33566788899999999999999999999988764433 23467777778888999999999
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 036461 223 YSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE 302 (369)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 302 (369)
+.+..+.+.+ ....--.+.......|+++.|.+.++.+.+.+...-+.+...+..+|...|+.++...++..+.+. .
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~ 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--N 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--c
Confidence 9999987544 455556778889999999999999999999876666788899999999999999999999999876 4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh---cCchHHHHHHHHHhh
Q 036461 303 LDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCA---DGKMDKARDLFLDME 367 (369)
Q Consensus 303 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~ 367 (369)
+....-..+........-.+.|...+.+-+.. .|+...+..++..... .|+..+.+-.+++|.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 55555556655555555566666666555544 6899999999987643 466777777777775
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-14 Score=110.54 Aligned_cols=290 Identities=16% Similarity=0.150 Sum_probs=229.2
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC---HHhHHHHHHHHHh
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN---VVTYNSLIHGFCY 107 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 107 (369)
-.++.++|+++|-.|.+.+ +.+..+-.+|...|.+.|..++|+++.+.+.++.--+. ......|..-|..
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 4568999999999999976 56678889999999999999999999999987621111 2234557788899
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCChHH
Q 036461 108 ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPN----AFVYNTLMDGFCLTGRVNR 183 (369)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 183 (369)
.|-++.|+.+|..+.+.+ ..-......++..|-...+|++|+++-+++.+.+..+. ...|.-+...+....+.++
T Consensus 120 aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred hhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999999998864 33566788899999999999999999999998875543 3346667777778899999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 036461 184 AEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 184 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (369)
|..++.+..+.+ +..+.+-..+.......|+++.|.+.++.+.+.++.--..+...|..+|...|+.++....+.++.+
T Consensus 199 A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 199 ARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999998875 5556666678889999999999999999999987666667888999999999999999999999988
Q ss_pred cCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHhccc
Q 036461 264 HGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCK---SGRLKIAWELFRSLPR 333 (369)
Q Consensus 264 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 333 (369)
... .......+.+.-....-.+.|...+.+-... +|+...+..++..-.. .|+..+....+++|+.
T Consensus 278 ~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 278 TNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 643 4444445555444555566676666655544 7999999999986543 3456667777777764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-13 Score=110.75 Aligned_cols=350 Identities=12% Similarity=0.112 Sum_probs=257.9
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
-|+++|++..+. .|+..+|++.|..-.+.+.++.|..++++..- +.|++..|.....--.+.|+...|..
T Consensus 159 gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--------~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 159 GARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--------VHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--------ecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 377888888875 78999999999999999999999999998887 46888889888888888899999999
Q ss_pred HHHHhHhC-C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhCCChhHHHHH-----
Q 036461 82 LFLKMKDE-N-INPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPN--VVSFNVIMNELCKNGKMDEASRL----- 152 (369)
Q Consensus 82 ~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~----- 152 (369)
+|+...+. | -..+...+.+....-.++..++.|.-+|+-.++. ++.+ ...|..+...=-+-|+.......
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 99888764 1 1112334555555555677888888888888775 2222 23344444433345654443333
Q ss_pred ---HHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchH-------HHHHHH---HHHHhhcCChHHH
Q 036461 153 ---LELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNV-------FSYSIL---INGYCKNKEIEGA 219 (369)
Q Consensus 153 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l---~~~~~~~~~~~~a 219 (369)
|+...+.+ +.|-.+|-..++.-...|+.+...++++++...- +|-. .+|.-+ +-.-....+++.+
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34444443 5577888888888888899999999999998763 4421 112111 1112346789999
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHH----HhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 036461 220 LSLYSEMLSKGIKPDVVIYNTLFIGL----FEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRT 295 (369)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (369)
.++|+..++. ++....||..+-..| .+..+...|.+++...+. ..|...++...+..-.+.++++.+..+|++
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999998884 444556666554444 367788999999988765 467888999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCC-cccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 296 LRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGV-LIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
.+..+ |-+-.+|...+..-...|+.+.|..+|.-+++.. .......|...|..-...|.++.|..+++++.+
T Consensus 463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 99886 6677888888888888999999999999888753 223455788888888899999999999998875
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-15 Score=126.61 Aligned_cols=289 Identities=15% Similarity=0.103 Sum_probs=220.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCC--CCCCHHhHHHHHHHHHhcCC
Q 036461 33 GHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN--INPNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 33 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 110 (369)
-+..+|+..|+++.... ..+......+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+.-+-+.
T Consensus 333 y~~~~A~~~~~klp~h~-------~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~-- 403 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-------YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE-- 403 (638)
T ss_pred HHHHHHHHHHHhhHHhc-------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--
Confidence 35678999999866543 4445677788899999999999999999987641 112567777776544221
Q ss_pred HHHHHHHH-HHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 036461 111 WNEAKCLF-IEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFV 189 (369)
Q Consensus 111 ~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (369)
-++..+ +.++.. -+-.+.+|..+..+|.-.++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+
T Consensus 404 --v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 404 --VALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred --HHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHH
Confidence 223333 333333 24467899999999999999999999999998874 2367888888888888999999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcC
Q 036461 190 SMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAAD 269 (369)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 269 (369)
...... +.+-.+|-.+...|.+.++++.|.-.|+++.+-++. +.+....+...+.+.|+.++|+.+++++...+. -|
T Consensus 480 ~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn 556 (638)
T KOG1126|consen 480 KALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KN 556 (638)
T ss_pred hhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CC
Confidence 888653 344556666788899999999999999999887544 666777788888899999999999999887653 35
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCccc
Q 036461 270 TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIA 338 (369)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 338 (369)
+...-..+..+...+++++|+..++++++.- +.+..++..++..|.+.|+.+.|+.-|.-+.+...++
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 5555566777788899999999999998764 5567788888899999999999998888887764433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-16 Score=128.22 Aligned_cols=283 Identities=13% Similarity=0.052 Sum_probs=224.3
Q ss_pred CChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhCCChhHHHH
Q 036461 74 GFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ--PNVVSFNVIMNELCKNGKMDEASR 151 (369)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 151 (369)
-+..+|+..|.++... +.-+..+...+..+|...+++++|.++|+.+.+...- -+...|...+..+-+ .-+--.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHH
Confidence 3678999999996665 4445577778899999999999999999999875210 144566666554432 112122
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 036461 152 LLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 231 (369)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (369)
+-+.+.+. .+..+.+|.++.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 22333433 25578999999999999999999999999999875 44788999888888999999999999999987633
Q ss_pred CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036461 232 KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCL 311 (369)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 311 (369)
. +...|-.+...|.+.++++.|+-.|+.+.+.+ +.+......++..+.+.|+.++|+++++++...+ +.|+..-..-
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 3 44566678889999999999999999999865 3467777888899999999999999999999877 5566666667
Q ss_pred HHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 312 IDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 312 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
+..+...+++++|+..++++.+. ++-+...+..+...|.+.|+.+.|+.-|--+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 77888899999999999999886 3336678888999999999999998776433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-14 Score=114.45 Aligned_cols=221 Identities=16% Similarity=0.121 Sum_probs=175.2
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHH
Q 036461 140 LCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGA 219 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (369)
+.-.|+...+..-|+..+..... +...|..+..+|....+.++....|....+.+ +.++.+|..-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 34467888888888888877533 33337777888999999999999999998886 66778888888888888999999
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 220 LSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
..-|++.++..+. +...|..+..+..+.+.++++...|++.++. .+..++.|+...+.+...++++.|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999986433 5566777777778899999999999999887 5667899999999999999999999999999876
Q ss_pred CCC-------CCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 300 KYE-------LDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 300 ~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
... +.+.+...++.. .-.+++..|..++++..+.+.+ ....+..|...-.+.|+.++|+++|++-
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 321 112222223222 2348999999999999986433 4558889999999999999999999874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-13 Score=109.04 Aligned_cols=284 Identities=11% Similarity=0.060 Sum_probs=230.1
Q ss_pred cCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHH
Q 036461 73 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRL 152 (369)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (369)
.|+|.+|++...+..+.+.. ....|..-.++.-+.|+.+.+-.++.+..+....++........+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 69999999999998877543 45556666778888999999999999998864455666777788889999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchH-------HHHHHHHHHHhhcCChHHHHHHHHH
Q 036461 153 LELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNV-------FSYSILINGYCKNKEIEGALSLYSE 225 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (369)
++.+.+.+ +.++.......++|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...+++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99999886 457788899999999999999999999999988865544 3566666666666666665566666
Q ss_pred HHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 036461 226 MLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDI 305 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 305 (369)
.... .+.++..-..++.-+.+.|+.++|.++..+..+++..|+ . ...-.+.+.++.+.-.+..+...... +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 6554 444677778888899999999999999999998865554 2 22224557788888777777776554 5677
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 306 RAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 306 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++-
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 89999999999999999999999988875 789999999999999999999999988764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.8e-14 Score=109.17 Aligned_cols=293 Identities=13% Similarity=0.091 Sum_probs=235.0
Q ss_pred HHHHHHh--cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHH
Q 036461 25 LINGLCR--TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLI 102 (369)
Q Consensus 25 l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (369)
+.+++.+ .|+|.+|.++..+..+.+ +.....|..-+++.-..|+.+.+-.++.++.+..-.++.....+..
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~-------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltra 160 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHG-------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRA 160 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcC-------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 4444433 599999999999977765 2335566777788888999999999999998864456677778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccH-------HHHHHHHHHH
Q 036461 103 HGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNA-------FVYNTLMDGF 175 (369)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~ 175 (369)
+.....|+++.|..-++++...+.. +........++|.+.|++.....++..+.+.+.-.+. .+|..+++-.
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988644 6778899999999999999999999999998865443 3566666666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHH
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF 255 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (369)
...+..+.-...++..... ...++..-..++.-+.+.|+.++|.++..+..+++..|. -.....+.+.++...-+
T Consensus 240 ~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~ 314 (400)
T COG3071 240 RDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLI 314 (400)
T ss_pred hccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHH
Confidence 6666666666677766544 255677777888899999999999999999999877665 22233456778888888
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 256 KLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
+..+.-.+. .+.++..+.++...|.+.+.|.+|...|+...+. .|+...|+.+..++.+.|++..|.+..++...
T Consensus 315 k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 315 KAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 877776654 2446689999999999999999999999988766 79999999999999999999999999988754
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.8e-14 Score=112.07 Aligned_cols=346 Identities=16% Similarity=0.130 Sum_probs=236.9
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcc--cc----cchhhHHHHH-----HH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV--CK----PNTVTYTTII-----DG 69 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~----~~~~~~~~l~-----~~ 69 (369)
++|+.-|+.+.+. .|+..+-..|+-++...|+-+...+.|.++....++.+.. ++ |+....+.-+ .-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 4788899998886 5788776677777888899999999999998755322110 11 2222222211 11
Q ss_pred HHhcC--ChHHHHHHHHHhHhCCCCCCHH-----h--------H--------HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036461 70 LCKEG--FVDKAKELFLKMKDENINPNVV-----T--------Y--------NSLIHGFCYANDWNEAKCLFIEMMDQGV 126 (369)
Q Consensus 70 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~-----~--------~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (369)
.-+.+ +.++++-.--+++..=+.|+-. + + ..-.-.+.+.|+++.|+++++-+.+...
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 11111 1222222222222211222210 0 0 0112356777888888877776654321
Q ss_pred CCCh-------------------------------hhHHH-----HHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHH
Q 036461 127 QPNV-------------------------------VSFNV-----IMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNT 170 (369)
Q Consensus 127 ~~~~-------------------------------~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (369)
+... .-|+. -.......|++++|.+.|.+.+.....- ......
T Consensus 451 k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ealfn 529 (840)
T KOG2003|consen 451 KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEALFN 529 (840)
T ss_pred hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHHHHH
Confidence 1100 01111 0111223678999999999988764332 233333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc
Q 036461 171 LMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ 250 (369)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (369)
+.-.+-..|+.++|+++|-++...- ..+..+...+...|-...+..+|++++.+.... ++.|+...+.|...|-+.|+
T Consensus 530 iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 530 IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccc
Confidence 4556788999999999998886542 456777888889999999999999999988876 55688899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHH
Q 036461 251 VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDG-LCKSGRLKIAWELFR 329 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~ 329 (369)
-..|++++-+-.+. ++.+.++...+...|....-+++++..|++..-. .|+..-|..++.. +.+.|++..|..+|+
T Consensus 608 ksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 608 KSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred hhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999988766555 5678899999999999999999999999998754 7999999887754 567899999999999
Q ss_pred hcccCCcccCHHHHHHHHHHHHhcCc
Q 036461 330 SLPRGVLIADVVTYNIMIHALCADGK 355 (369)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 355 (369)
+..+. ++-|......|++.+...|-
T Consensus 685 ~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 685 DIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHh-CccchHHHHHHHHHhccccc
Confidence 99876 55588888888888876664
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-13 Score=109.89 Aligned_cols=294 Identities=12% Similarity=0.053 Sum_probs=228.4
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCC--CCCHHhHHHHHHH
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI--NPNVVTYNSLIHG 104 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 104 (369)
.++....+.+++++-.+.....+ ++.+...-+....+.....++++|+.+|+++.+... -.|..+|..++..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~g------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVG------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 34555567788888888888877 455555566666677788999999999999988621 1256777776644
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHH
Q 036461 105 FCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 184 (369)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (369)
- ..+ ..+..+.+-...--+-.+.|...+.+-|.-.++.++|...|++.++.+ +.....|+.+..-|...++...|
T Consensus 309 ~--~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 309 K--NDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred H--hhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 3 222 122222222211123345678888899999999999999999999987 44678899999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 185 EELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
.+.++++.+.+ |.|-..|-.+.++|.-.+.+.-|+-+|++...-.+ .|...|.+|..+|.+.++.++|++.|.+....
T Consensus 384 i~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999986 78899999999999999999999999999998754 38899999999999999999999999999987
Q ss_pred CCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----C-CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 265 GVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL----K-YEL-DIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
|- .+...+..+...|.+.++.++|...|++-++. | ..| ...+...|...+.+.+++++|..........
T Consensus 462 ~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 462 GD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 63 36688999999999999999999999887652 2 122 2334444667788888998887766665543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-12 Score=105.28 Aligned_cols=350 Identities=11% Similarity=0.077 Sum_probs=259.4
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
+|+.+|++.+.-+ ..+...|...+..-.++..+..|..+++++...- |.-...|.-.+..--..|++..|.+
T Consensus 91 RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-------PRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 91 RARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-------PRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-------chHHHHHHHHHHHHHHhcccHHHHH
Confidence 6888999998876 5788889999999999999999999999998854 3445677777777778899999999
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc-C
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI-G 160 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 160 (369)
+|++-.+. .|+...|++.+..-.+.+.++.|..+|++..-. .|+..+|......=.+.|....+..+|+.+.+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99998874 789999999999999999999999999998864 589999998888888899999999999887754 1
Q ss_pred C-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------------------------------------------CC
Q 036461 161 V-RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM-------------------------------------------GC 196 (369)
Q Consensus 161 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------------------------~~ 196 (369)
- ..+...+.+....-.++..++.|.-+|+-...+ .-
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 0 112223333333333344444444444333221 01
Q ss_pred CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcH-H-hHHHHH--------HHHHhcccHHHHHHHHHHHHHcCC
Q 036461 197 KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV-V-IYNTLF--------IGLFEIHQVERAFKLFDEMQRHGV 266 (369)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~~~ 266 (369)
+.|-.+|-..+..-...|+.+...++|++.+.. ++|-. . .|...+ -.-....+.+.+.++++..++. +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 345556666777777788899999999988876 34421 1 121111 1113467888899999888874 3
Q ss_pred CcCHHHHHH----HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHH
Q 036461 267 AADTWAYRT----FIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVT 342 (369)
Q Consensus 267 ~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 342 (369)
+-...|+.. ....-.++.++..|.+++..++ |..|...+|...|..-.+.+++|....+|++.++.++. +..+
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~ 473 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYA 473 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHH
Confidence 333444443 3344457888999999998877 55889999999999999999999999999999987533 6778
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 343 YNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
|......-...|+.+.|..+|+-...
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 88888888889999999999875543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-12 Score=109.01 Aligned_cols=332 Identities=12% Similarity=0.011 Sum_probs=178.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
+|..-...|.+.+.++-|..+|..+.+-. +.+...|......--..|..+....+++++... .+-....|..
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf-------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM 589 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF-------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLM 589 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc-------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHH
Confidence 55555556666666666666666555543 334455555555545555555555555555543 3333444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (369)
....+-..|+...|..++....+.... +...|...+..-.....++.|..+|.+.... .|+..+|.--+...--.++
T Consensus 590 ~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhh
Confidence 444455555555555555555554222 4445555555555555555555555555443 2344444444444444455
Q ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHH
Q 036461 181 VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDE 260 (369)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (369)
.++|.+++++..+.- +.-...|..+.+.+-+.++.+.|...|..-.+. .+-....|..|...--+.|++-+|..++++
T Consensus 667 ~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 667 VEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 555555555554431 223334445555555555555555555444433 111233344444444444455555555555
Q ss_pred HHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----------------------------CCCCCHHHHHHH
Q 036461 261 MQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL-----------------------------KYELDIRAYNCL 311 (369)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------------------------~~~~~~~~~~~l 311 (369)
..-.+ +-+...|...++.-.+.|+.+.|..+..++++. .+..|+.+...+
T Consensus 745 arlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllai 823 (913)
T KOG0495|consen 745 ARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAI 823 (913)
T ss_pred HHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHH
Confidence 44433 224445555555555555555555444443321 124466666777
Q ss_pred HHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 312 IDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 312 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
...+....+++.|.+.|.+.++.+ +....+|..+...+.+.|.-++-.+++.+..
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 777777788888888888888764 2255678888888888887777777766543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-12 Score=106.52 Aligned_cols=301 Identities=13% Similarity=0.055 Sum_probs=219.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNE 139 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (369)
..+|+.-...|.+.+.++-|..+|...++. .+.+...|......--..|..+.-..+|++.... .+-....|......
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 345666667777777777777777777765 3446666776666666677888888888888776 33355566666777
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHH
Q 036461 140 LCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGA 219 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (369)
+-..|+...|..++..+.+... .+...|..-+.......+++.|..+|.+.... .++..+|..-+...--.++.++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 7778888888888888888753 36778888888888888899999988888775 46677776666666667888899
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 220 LSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
.+++++.++. ++.-...|..+.+.+-+.++.+.|...|..-.+. ++-....|..+...-.+.|++-.|..++++..-.
T Consensus 671 ~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 671 LRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 9988888875 2223457778888888888888888888776654 3445667777777777888899999999988876
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC----C-------------------------cccCHHHHHHHHHHH
Q 036461 300 KYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG----V-------------------------LIADVVTYNIMIHAL 350 (369)
Q Consensus 300 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-------------------------~~~~~~~~~~l~~~~ 350 (369)
+ |.+...|...|+.-.+.|..+.|..+..++++. | ..-|+.+...+...|
T Consensus 749 N-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lf 827 (913)
T KOG0495|consen 749 N-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLF 827 (913)
T ss_pred C-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHH
Confidence 5 667888888888888899888887666554432 1 112444555566667
Q ss_pred HhcCchHHHHHHHHHhhc
Q 036461 351 CADGKMDKARDLFLDMEA 368 (369)
Q Consensus 351 ~~~g~~~~A~~~~~~m~~ 368 (369)
....++++|+++|++..+
T Consensus 828 w~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 777778888888877543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-13 Score=119.37 Aligned_cols=214 Identities=14% Similarity=0.063 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHh---------cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCR---------TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK 72 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 72 (369)
+|++.|++..+.. |.+...|..+..++.. .+++++|...++++.+.+ |.+...+..+..++..
T Consensus 279 ~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 279 QALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHH
Confidence 5777777777764 4445566555554432 234677777777777766 4566777777777777
Q ss_pred cCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHH
Q 036461 73 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRL 152 (369)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (369)
.|++++|...|+++.+.+ |.+...+..+..++...|++++|...+++..+..+. +...+..++..+...|++++|...
T Consensus 351 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHH
Confidence 777788887777777653 335666777777777777777787777777765422 222233344445556777777777
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 153 LELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
++++.+...+.++..+..+..++...|+.++|...+.++.... +.+....+.+...|...| +.|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 7776654322244455666667777777777777777765442 223334445555555555 356665555554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-14 Score=108.43 Aligned_cols=230 Identities=13% Similarity=0.049 Sum_probs=179.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT 178 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (369)
+.+..+|.+.|.+.+|.+.++..... .|-+.||..+.++|.+..++..|+.++.+-.+. .+-++.....+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 46778888888888888888887765 456778888888888888888888888887765 233444445567778888
Q ss_pred CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHH
Q 036461 179 GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLF 258 (369)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (369)
++.++|.++++...+.. +.++.....+...|.-.++++.|+.+|+++++.|+. ++..|+.+..+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88888888888887765 566777777777788888888888888888888876 7788888888888888888888888
Q ss_pred HHHHHcCCCcC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 259 DEMQRHGVAAD--TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 259 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.+....--.|+ ...|-.+.......||+..|.+.|+-....+ +.+...++.|.-.-.+.|+.+.|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88776433333 4567777777788888888888888887665 556778888888888888888888888877654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.8e-13 Score=115.72 Aligned_cols=234 Identities=16% Similarity=0.073 Sum_probs=153.3
Q ss_pred cCHhHHHHHHHHHHh-----cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh---------cCChHHHHHH
Q 036461 17 PNVFTYNTLINGLCR-----TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK---------EGFVDKAKEL 82 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~ 82 (369)
.+..+|...+++... .+++++|+..|++..+.+ |.+...|..+..++.. .+++++|...
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~ 326 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEH 326 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHH
Confidence 455666666665422 234678999999999876 4456677777665542 2347788888
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 036461 83 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVR 162 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (369)
++++.+.+ |.+...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...++.+.+.+..
T Consensus 327 ~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 327 AIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 88887763 3367777777777888888888888888887764 334566777777888888888888888888776532
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 036461 163 PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 242 (369)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (369)
+...+..++..+...|++++|...++++.....+.++..+..+..++...|+.++|...+.++..... .+....+.+.
T Consensus 405 -~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~ 482 (553)
T PRK12370 405 -RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLY 482 (553)
T ss_pred -ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHH
Confidence 23333334445666777888888887776553233445566667777778888888888777655421 1233344444
Q ss_pred HHHHhcccHHHHHHHHHHHHH
Q 036461 243 IGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~ 263 (369)
..+...| +.+...++.+.+
T Consensus 483 ~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 483 AEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHhccH--HHHHHHHHHHHH
Confidence 5555555 366665555544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.3e-13 Score=105.06 Aligned_cols=199 Identities=15% Similarity=0.068 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 036461 165 AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIG 244 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (369)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555666666666666666666665543 334555556666666666666666666666655322 34455556666
Q ss_pred HHhcccHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 036461 245 LFEIHQVERAFKLFDEMQRHGV-AADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKI 323 (369)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 323 (369)
+...|++++|...+........ +.....+..+..++...|++++|...+++..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6666777777777666655321 1233455556666777777777777777776654 3345666677777777777777
Q ss_pred HHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 324 AWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 324 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
|...+++..+. .+.+...+..+...+...|+.++|..+++.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777776654 23355566666677777777777777766654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.9e-13 Score=103.50 Aligned_cols=201 Identities=15% Similarity=0.084 Sum_probs=129.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
....+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34566666667777777777777777666542 3345566666667777777777777777766653 224455566666
Q ss_pred HHHhCCChhHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGV-RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (369)
.+...|++++|...++...+... +.....+..+..++...|++++|...+.+..... +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 66777777777777777665421 1233455556667777777777777777776653 334556666777777777777
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 036461 218 GALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (369)
+|...+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777777665 233455555666666777777777777666554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-12 Score=104.61 Aligned_cols=286 Identities=14% Similarity=0.040 Sum_probs=200.9
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
..++.....-.+.+...+++.+..++++.+.+.+ |++...+..-|.++...|+..+-..+=.++.+. .|..+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-------pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a 312 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-------PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKA 312 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-------CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCC
Confidence 3455556666667777788888888888888776 667777777777888888877777777777765 45567
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF 175 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (369)
.+|-.+.-.|.-.|+..+|.+.|.+....... -...|..+...+.-.|..++|+..|..+-+.= +-....+--+.--|
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEY 390 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHH
Confidence 78888887777778888888888877654322 34467777778888888888888887766541 11111222344456
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC--CCC----CcHHhHHHHHHHHHhcc
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK--GIK----PDVVIYNTLFIGLFEIH 249 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~~ 249 (369)
.+.++.+.|.+.|.+..... |.|+...+-+.-.....+.+.+|..+|+..+.. ... .-..+++.|..+|.+.+
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 77788888888888887764 667777777777777778888888888777632 011 12345677778888888
Q ss_pred cHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036461 250 QVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGL 315 (369)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (369)
.+++|+..++..+... +.+..++..+.-.|...|+++.|.+.|.+..-. .|+..+-..++..+
T Consensus 470 ~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 8888888888877763 457778888888888888888888888877754 56655555554433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.6e-12 Score=102.38 Aligned_cols=257 Identities=13% Similarity=0.086 Sum_probs=106.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChH
Q 036461 103 HGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182 (369)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (369)
.-+...+++.+..++.+.+.+.. ++....+..-+.++...|+..+-..+=..+.+.- |..+.+|.++.-.|...|+.+
T Consensus 252 d~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcH
Confidence 33444444455555444444431 3333334444444444444444444444444331 233444444444444445555
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHH
Q 036461 183 RAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQ 262 (369)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (369)
+|.++|.+....+ +.-...|-.+...+.-.|..++|+..+..+-+. ++-...-+--+.--|.+.++.+.|.+.|.+..
T Consensus 330 eARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 330 EARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5555554444332 122233444444444444444444444444332 00011111122233444444444444444444
Q ss_pred HcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCc
Q 036461 263 RHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK------YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVL 336 (369)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 336 (369)
.. .|.|+..++.+.-.....+.+.+|..+|+..+..- ...-..+++.|+.+|.+.+++++|+..+++.+...
T Consensus 408 ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~- 485 (611)
T KOG1173|consen 408 AI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS- 485 (611)
T ss_pred hc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-
Confidence 33 12233344444444444444444444444433110 00112234444444444444444444444444331
Q ss_pred ccCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 337 IADVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 337 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
+-+..++.++.-.|...|+++.|++.|++
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 22444444444444444444444444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-13 Score=103.47 Aligned_cols=230 Identities=14% Similarity=0.100 Sum_probs=125.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC
Q 036461 64 TTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKN 143 (369)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (369)
+.+..+|.+.|.+.+|.+.++..... .|-+.||..|-.+|.+..++..|+.++.+-.+. .+.+......+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 44555666666666666666555543 345555555556666666666666666555543 222333333445555555
Q ss_pred CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHH
Q 036461 144 GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLY 223 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (369)
++.++|.++|+...+.. +.++.....+...|.-.++++-|+.+++++.+.| ..++..|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 66666666666555543 2344444444555555566666666666666655 344555555555555566666666666
Q ss_pred HHHHhCCCCCc--HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 224 SEMLSKGIKPD--VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 224 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
.+....--.|+ ...|-.+.......||+..|.+.|+-.+.++ +.+...++.+.-.-.+.|++++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 55554322222 2344455555555666666666666555543 234555666666566666666666666655543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-11 Score=102.01 Aligned_cols=296 Identities=17% Similarity=0.087 Sum_probs=209.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 036461 63 YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK 142 (369)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (369)
..-....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.++ .+..-|..+..+..-
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhh
Confidence 333455678889999999999886654 554566677888999999999999999999999853 244455555555422
Q ss_pred C-----CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCh
Q 036461 143 N-----GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV-NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (369)
Q Consensus 143 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (369)
. .+.+....+|+.+...- |.......+.-.+..-..+ ..+..++......|+|+ +|+.+-..|......
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 2 25677788888887653 3333333332222222222 34556667777777543 455555556555555
Q ss_pred HHHHHHHHHHHhC----C----------CCCcH--HhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 036461 217 EGALSLYSEMLSK----G----------IKPDV--VIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGL 280 (369)
Q Consensus 217 ~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 280 (369)
.-...++...... + -+|+. .++..+.+.|...|++++|+.+++..+++. +..+..|..-...+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Karil 238 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 5555555555432 1 12333 345667888889999999999999999974 33478899999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHH------HH--HHHHHHHHh
Q 036461 281 CKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVV------TY--NIMIHALCA 352 (369)
Q Consensus 281 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~ 352 (369)
-..|++.+|...++.+...+ .-|...-+..+..+.+.|+.++|..++....+.+..|-.. .| .-...+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887 5577777778888999999999999999998776433221 22 345578999
Q ss_pred cCchHHHHHHHHHhh
Q 036461 353 DGKMDKARDLFLDME 367 (369)
Q Consensus 353 ~g~~~~A~~~~~~m~ 367 (369)
.|++..|++.|..+.
T Consensus 318 ~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 318 QGDYGLALKRFHAVL 332 (517)
T ss_pred HhhHHHHHHHHHHHH
Confidence 999999998887654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-12 Score=111.77 Aligned_cols=254 Identities=17% Similarity=0.205 Sum_probs=169.8
Q ss_pred HHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHH
Q 036461 5 ALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 84 (369)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (369)
.++-.+...|+.|+.++|..+|.-|+..|+.+.|- +|.-|.-.. .+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks------Lpv~e~vf~~lv~sh~~And~Enpk---- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS------LPVREGVFRGLVASHKEANDAENPK---- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc------ccccchhHHHHHhcccccccccCCC----
Confidence 56788899999999999999999999999999998 999998877 6777888999988888888877765
Q ss_pred HhHhCCCCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHh----cCCCCChhhHH--------------HHHHHHHhC
Q 036461 85 KMKDENINPNVVTYNSLIHGFCYANDWNE---AKCLFIEMMD----QGVQPNVVSFN--------------VIMNELCKN 143 (369)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~~~~~~~~--------------~l~~~~~~~ 143 (369)
.|.+.+|..|..+|...|+... +.+.+..+.. .|+.....-+- ..+......
T Consensus 80 -------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~e 152 (1088)
T KOG4318|consen 80 -------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLE 152 (1088)
T ss_pred -------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHH
Confidence 5788899999999999988654 3332222221 22211111111 111122223
Q ss_pred CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHH
Q 036461 144 GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTG-RVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSL 222 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (369)
|-++.+++++..+-...-. .+..+ .++-+.... .+++-..+...... .+++.+|..++.+..-.|+.+.|..+
T Consensus 153 glwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHH
Confidence 3333333333322111000 11111 133222222 23333333333332 57888888888888888999999999
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 223 YSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
+.+|.+.|++.+..-|..|+.+ .++...+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999998888888777777655 77788888888888888888998888888777777554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-10 Score=94.03 Aligned_cols=333 Identities=15% Similarity=0.104 Sum_probs=223.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc-hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-HHhH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN-VVTY 98 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 98 (369)
.+.....-|.++|++++|++.|.+.+.. .|+ +..|.....+|...|+|+++.+--.+..+. .|+ +..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--------~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl 186 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--------CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKAL 186 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--------CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHH
Confidence 3455667788999999999999999985 477 888999999999999999999988888774 333 3455
Q ss_pred HHHHHHHHhcCCHHHHHH----------------------HHHHH--------Hh-cC--CCCChhhHHHHHHHHHh---
Q 036461 99 NSLIHGFCYANDWNEAKC----------------------LFIEM--------MD-QG--VQPNVVSFNVIMNELCK--- 142 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~----------------------~~~~~--------~~-~~--~~~~~~~~~~l~~~~~~--- 142 (369)
..-..++-..|++.+|+. ++++. .. .+ +-|+..........+..
T Consensus 187 ~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 187 LRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 555666666777666543 11111 01 11 12333333333322211
Q ss_pred -----CCC-----hhHHHHHHH------------HHHHc------CCCcc---------HHHHHHHHHHHHhcCChHHHH
Q 036461 143 -----NGK-----MDEASRLLE------------LMIQI------GVRPN---------AFVYNTLMDGFCLTGRVNRAE 185 (369)
Q Consensus 143 -----~~~-----~~~a~~~~~------------~~~~~------~~~~~---------~~~~~~l~~~~~~~~~~~~a~ 185 (369)
.++ ..++.+.+. .+.+. ....+ ..+.......+.-.|+.-.|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 000 111222111 11110 01111 222222233445678888999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC
Q 036461 186 ELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG 265 (369)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (369)
.-|+..+... +.+...|-.+..+|....+.++.+..|.+..+.++. ++.+|..=.+.+.-.+++++|..=|+..+..+
T Consensus 347 ~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 347 EDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999998875 333334777888899999999999999999987654 67788888888888999999999999988764
Q ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcc-----cC-
Q 036461 266 VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLI-----AD- 339 (369)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~- 339 (369)
+.+...+..+..+..+.+.++++...|++.++. +|..+.+|+.....+...++++.|.+.|+..++.... .+
T Consensus 425 -pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 425 -PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 234555666666667889999999999999864 4667889999999999999999999999988764211 11
Q ss_pred -HHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 340 -VVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 340 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
+.+...++..- -.+++..|.+++++..+
T Consensus 503 ~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 503 APLVHKALLVLQ-WKEDINQAENLLRKAIE 531 (606)
T ss_pred hhhhhhhHhhhc-hhhhHHHHHHHHHHHHc
Confidence 22222222222 34889999999887654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-10 Score=99.10 Aligned_cols=298 Identities=16% Similarity=0.131 Sum_probs=209.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHH
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN 99 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (369)
++.......+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |.|...|.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~-------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~ 76 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ-------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYR 76 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHH
Confidence 44455667788999999999999886654 34556777888999999999999999999999985 33555555
Q ss_pred HHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCh-hHHHHHHHHHHHcCCCccHHHHHHHHH
Q 036461 100 SLIHGFCYA-----NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKM-DEASRLLELMIQIGVRPNAFVYNTLMD 173 (369)
Q Consensus 100 ~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (369)
.+..+..-. .+.+....+|+++...- |.......+.-.+.....+ ..+..++..+...|+|+ +|..+-.
T Consensus 77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~ 151 (517)
T PF12569_consen 77 GLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKP 151 (517)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHH
Confidence 666555222 35777888999887653 3333333332222222223 34556667777888653 4555555
Q ss_pred HHHhcCChHHHHHHHHHHHhc----C----------CCchH--HHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHh
Q 036461 174 GFCLTGRVNRAEELFVSMESM----G----------CKHNV--FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVI 237 (369)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (369)
.|......+-..+++...... + -+|+. .++..+.+.|...|++++|+.++++.++..+. .+..
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~el 230 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVEL 230 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHH
Confidence 555555555555555554321 1 13333 34466788888999999999999999997433 4678
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH------HH--H
Q 036461 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIR------AY--N 309 (369)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~ 309 (369)
|..-.+.+-..|++.+|...++.....+. -|...-+..+..+.++|++++|..++....+.+..|-.. .| .
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 88889999999999999999999998753 477777788888999999999999999887665433221 12 3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcc
Q 036461 310 CLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 310 ~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
..+.+|.+.|++..|++-|..+.
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 45678899999988887666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-10 Score=91.55 Aligned_cols=303 Identities=15% Similarity=0.066 Sum_probs=223.5
Q ss_pred ccchhhHHHHHHHHHh--cCChHHHHHHHHHhHhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhH
Q 036461 57 KPNTVTYTTIIDGLCK--EGFVDKAKELFLKMKDE-NINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSF 133 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (369)
+|+.......+.+++. .++...|...+-.+... -.+.|+.....+..++...|+..+|+..|++....+ +-+....
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~M 269 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAM 269 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhH
Confidence 4444444445555444 34445555555444332 356678888999999999999999999999987653 1133334
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc
Q 036461 134 NVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKN 213 (369)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (369)
....-.+.+.|+.+....+...+.... .-+...|..-+......++++.|+.+-++.++.+ +.+...+..-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 444555678899998888888887653 2244445555566677889999999999988775 55667777777888899
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHH-HHH-HhCCCHHHHHH
Q 036461 214 KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFI-DGL-CKNGYIVEAVE 291 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~a~~ 291 (369)
+++++|.-.|+...... +-+...|..|+.+|...|.+.+|...-+...+. .+.+..++..+. ..+ ....--++|..
T Consensus 348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 99999999999988763 237789999999999999999998888776654 344666666553 223 33445688999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 292 LFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
+++...... |.-....+.+...|...|+.+.++.++++.... .||....+.|.+.+...+.+++|++.|....
T Consensus 426 f~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 426 FAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999887663 334567788888999999999999999998874 6899999999999999999999998886543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-11 Score=102.09 Aligned_cols=241 Identities=20% Similarity=0.135 Sum_probs=162.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCChh-hHHHHHHHHHhCCChhHHHHHHHHHHHc-----
Q 036461 92 NPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ-----GV-QPNVV-SFNVIMNELCKNGKMDEASRLLELMIQI----- 159 (369)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 159 (369)
|.-..+...+...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|+.+...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333455666888899999999999998887654 21 22222 2334667788888999988888888754
Q ss_pred C--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----C-CCchH-HHHHHHHHHHhhcCChHHHHHHHHHHHhC-
Q 036461 160 G--VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM-----G-CKHNV-FSYSILINGYCKNKEIEGALSLYSEMLSK- 229 (369)
Q Consensus 160 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 229 (369)
| .+.-..+++.|..+|.+.|++++|...++++... + ..+.+ ..++.+...+...+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 1222456677778888899988888888776432 1 11222 23566677778888888888888776542
Q ss_pred --CCCCc----HHhHHHHHHHHHhcccHHHHHHHHHHHHHc----C---CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036461 230 --GIKPD----VVIYNTLFIGLFEIHQVERAFKLFDEMQRH----G---VAADTWAYRTFIDGLCKNGYIVEAVELFRTL 296 (369)
Q Consensus 230 --~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (369)
-+.++ ..+++.|...|...|++++|..+++.++.. + ..-....++.+...|.+.+++++|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 11222 356788888888888888888888876642 1 1122345677777888888888888877765
Q ss_pred HHc----C--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 297 RIL----K--YELDIRAYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 297 ~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
... | .+....+|..|+..|...|+++.|.++.+.+.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 432 2 12234677888888888888888888877665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-09 Score=90.36 Aligned_cols=170 Identities=9% Similarity=-0.022 Sum_probs=106.2
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
..+.++|+.+.-.+....++++|++.|..+...+ +.|...|.-+.-.-++.++++........+.+. .+...
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~r 143 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQR 143 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhH
Confidence 4566778888777777888888888888888766 566777777777777777777777776666654 23345
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCChhhHHHHH------HHHHhCCChhHHHHHHHHHHHcCCCccHHHH
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQG-VQPNVVSFNVIM------NELCKNGKMDEASRLLELMIQIGVRPNAFVY 168 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (369)
..|..++.++.-.|+...|..+++...+.. ..|+...+.... ......|..+.|.+.+...... +......-
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~ 222 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHh
Confidence 566777777777788888888888776653 234444443322 2233455555555555443322 11111122
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc
Q 036461 169 NTLMDGFCLTGRVNRAEELFVSMESM 194 (369)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (369)
..-...+.+.++.++|..++..+...
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 23345556667777777777776665
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.9e-10 Score=94.07 Aligned_cols=349 Identities=13% Similarity=0.027 Sum_probs=205.9
Q ss_pred HHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHh
Q 036461 7 FMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKM 86 (369)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (369)
+.+++...+..++..|..+.-++...|++..+.+.|++....- -.....|..+...+...|.-..|..+++..
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------~~~~e~w~~~als~saag~~s~Av~ll~~~ 383 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------FGEHERWYQLALSYSAAGSDSKAVNLLRES 383 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhhHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 3444444456677788888888888888888888888766532 223455666666666666655666655554
Q ss_pred HhCCC-CCCHHhHHHHHHHHHh-cCCHH--------------------------------------------------HH
Q 036461 87 KDENI-NPNVVTYNSLIHGFCY-ANDWN--------------------------------------------------EA 114 (369)
Q Consensus 87 ~~~~~-~~~~~~~~~l~~~~~~-~~~~~--------------------------------------------------~a 114 (369)
..... ++++..+...-..|.+ .+..+ ++
T Consensus 384 ~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks 463 (799)
T KOG4162|consen 384 LKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS 463 (799)
T ss_pred cccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence 33211 1122222222222221 22333 34
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036461 115 KCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM 194 (369)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (369)
++.+++..+.+.. |..+...+.--|+..++.+.|.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+.....
T Consensus 464 lqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 464 LQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 4444444443221 223333333445556666677777666666644556666666666666667777777766655432
Q ss_pred CCC-------------------chHHHHHHHHHHHhh-----------------------cCChHHHHHHHHHHH-----
Q 036461 195 GCK-------------------HNVFSYSILINGYCK-----------------------NKEIEGALSLYSEML----- 227 (369)
Q Consensus 195 ~~~-------------------~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~----- 227 (369)
-.. ....+...++..+-. .++..++.+....+.
T Consensus 543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 100 001111111111110 001111111111110
Q ss_pred ---hCC-----------CCCc------HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHH
Q 036461 228 ---SKG-----------IKPD------VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIV 287 (369)
Q Consensus 228 ---~~~-----------~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 287 (369)
..+ ..|+ ...|......+.+.+..+++...+.+.... .+.....|......+...|+++
T Consensus 623 ~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 623 QLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhH
Confidence 000 0011 112233445566677777887777777665 3456677777788888999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH--HHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 288 EAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWE--LFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
+|.+.|......+ |.++....++...+.+.|+..-|.. ++..+.+.+. .+...|..+...+.+.|+.++|.+.|.-
T Consensus 702 EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 702 EAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 9999999998776 6678889999999999999888877 9999998753 3889999999999999999999998875
Q ss_pred h
Q 036461 366 M 366 (369)
Q Consensus 366 m 366 (369)
.
T Consensus 780 a 780 (799)
T KOG4162|consen 780 A 780 (799)
T ss_pred H
Confidence 4
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-10 Score=94.09 Aligned_cols=225 Identities=13% Similarity=0.000 Sum_probs=149.9
Q ss_pred HHHhcCChhHHHHHHHHHHcCCCCCCccccc--chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHH
Q 036461 28 GLCRTGHTIVALNLFEEMANGNGEFGVVCKP--NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF 105 (369)
Q Consensus 28 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (369)
.....+..+.++.-+.++....+ ..| ....|..+...+...|++++|...|++..+.. +.+...|+.+...+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~ 108 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYL 108 (296)
T ss_pred ccCCchHHHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34444677788888888876541 112 24567788888888899999999888888763 44678888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHH
Q 036461 106 CYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAE 185 (369)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (369)
...|++++|...|++..+..+. +..++..+..++...|++++|.+.++...+.. |+..........+...++.++|.
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~ 185 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAK 185 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHH
Confidence 9999999999999888876422 45677778888888899999999998888764 33222222223344567888888
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHh---CCC--C-CcHHhHHHHHHHHHhcccHHHHHHHHH
Q 036461 186 ELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS---KGI--K-PDVVIYNTLFIGLFEIHQVERAFKLFD 259 (369)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (369)
..+.+..... +++...+ .+. ....|+...+ ..+..+.+ ..+ . .....|..+...+...|++++|...|+
T Consensus 186 ~~l~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 186 ENLKQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred HHHHHHHhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8887655332 2332222 222 2234444333 23333332 111 1 134578888888889999999999999
Q ss_pred HHHHcCC
Q 036461 260 EMQRHGV 266 (369)
Q Consensus 260 ~~~~~~~ 266 (369)
+..+.++
T Consensus 261 ~Al~~~~ 267 (296)
T PRK11189 261 LALANNV 267 (296)
T ss_pred HHHHhCC
Confidence 8887653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-09 Score=88.31 Aligned_cols=353 Identities=12% Similarity=0.089 Sum_probs=197.9
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChH---HH
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVD---KA 79 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a 79 (369)
+++++++.++ .++..-+-.|..++..+++++|.+.+......+...+.-.+.+...|..+-...++..+.- ..
T Consensus 157 s~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv 232 (835)
T KOG2047|consen 157 SIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV 232 (835)
T ss_pred HHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH
Confidence 5666776664 3556678888999999999999999988876553322222333444444444333322111 11
Q ss_pred HHHHHHhHhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------------------------------
Q 036461 80 KELFLKMKDENINPN--VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGV------------------------------- 126 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------- 126 (369)
..+++.+... -+| ...|.+|...|.+.|.+++|..+|++.+..-.
T Consensus 233 daiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~ 310 (835)
T KOG2047|consen 233 DAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEES 310 (835)
T ss_pred HHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 2222222221 111 12344445555555555555544444433210
Q ss_pred -----------------------------------CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc------cH
Q 036461 127 -----------------------------------QPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRP------NA 165 (369)
Q Consensus 127 -----------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~ 165 (369)
+.+...|..-.. ...|+..+...+|.++.+. +.| -.
T Consensus 311 ~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 311 GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPG 387 (835)
T ss_pred cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChh
Confidence 001111111111 1234445555555555443 111 13
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCch---HHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC-----------
Q 036461 166 FVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN---VFSYSILINGYCKNKEIEGALSLYSEMLSKGI----------- 231 (369)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------- 231 (369)
..|..+.+.|-..|+.+.|..+|++..+...+.- ..+|..-...-.++.+++.|+++.+.....--
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4567777888888888888888888876543322 34566666666777888888888777654211
Q ss_pred CC------cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 036461 232 KP------DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDI 305 (369)
Q Consensus 232 ~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 305 (369)
++ +...|...+...-..|-++....+++++.+..+. ++.........+....-++++.++|++-+..=..|+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 11 2233444555555667788888888888876553 4445445555556677788888888876654333443
Q ss_pred -HHHHHHHHHHHc---CCCHHHHHHHHHhcccCCcccCHH--HHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 306 -RAYNCLIDGLCK---SGRLKIAWELFRSLPRGVLIADVV--TYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 306 -~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
..|+..+..+.+ ...++.|..+|++.++ +.+|... .|......--+.|-...|+.++++.
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 466666655443 3458889999999888 4555443 2222222333458888888888764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.3e-11 Score=99.01 Aligned_cols=239 Identities=19% Similarity=0.177 Sum_probs=178.4
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHc-----C-CCccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc-----C-
Q 036461 129 NVVSFNVIMNELCKNGKMDEASRLLELMIQI-----G-VRPNAF-VYNTLMDGFCLTGRVNRAEELFVSMESM-----G- 195 (369)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~- 195 (369)
-..+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++++|..+|+++.+. |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677899999999999999999988775 2 123333 3345778899999999999999988643 2
Q ss_pred -CCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC-----CC-CCcH-HhHHHHHHHHHhcccHHHHHHHHHHHHHc---
Q 036461 196 -CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK-----GI-KPDV-VIYNTLFIGLFEIHQVERAFKLFDEMQRH--- 264 (369)
Q Consensus 196 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 264 (369)
.+.-..+++.|..+|.+.|++++|..+++...+- +. .|.. ..++.+...+...+++++|..++....+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1223456788888999999999999888877642 11 2222 24566777888899999999999876542
Q ss_pred CCCcC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 265 GVAAD----TWAYRTFIDGLCKNGYIVEAVELFRTLRILK-------YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 265 ~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
-+.++ ..++..+...|...|++++|..+++.++... ..-....++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 11222 4578899999999999999999999987531 112345778899999999999999888877543
Q ss_pred ----CCc-ccC-HHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 334 ----GVL-IAD-VVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 334 ----~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
.|. .|+ ..+|..|..+|.+.|++++|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 121 223 4688999999999999999999987654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-09 Score=87.31 Aligned_cols=292 Identities=15% Similarity=0.051 Sum_probs=217.1
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYA 108 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (369)
.+-.++...|...+-.+..... ++.|+.....+..++...|+.++|+..|++....+ +-+..........+.+.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~-----lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~e 279 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTT-----LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQE 279 (564)
T ss_pred HHHhcccchhhhHHHHHHhhcc-----CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhc
Confidence 3344555666555544443331 46788899999999999999999999999987642 11333333445556778
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 036461 109 NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELF 188 (369)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (369)
|+.+....+...+.... ..+...|..-+.......+++.|+.+-++.++.+ +.+...+..-...+...|+.++|.-.|
T Consensus 280 g~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 280 GGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred cCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHH
Confidence 89998888888876542 2345556666666777889999999999988875 335666766678888999999999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHH-HHHH-hcccHHHHHHHHHHHHHcCC
Q 036461 189 VSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF-IGLF-EIHQVERAFKLFDEMQRHGV 266 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~ 266 (369)
+...... |.+..+|..++.+|...|.+.+|..+-...... ...+..+...+. ..+. ....-++|.++++...+.
T Consensus 358 R~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~-- 433 (564)
T KOG1174|consen 358 RTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI-- 433 (564)
T ss_pred HHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--
Confidence 9988774 578899999999999999999998887776654 223455554442 2222 233457888888887764
Q ss_pred CcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 267 AAD-TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 267 ~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.|+ ......+...+...|..+.++.++++.... .||....+.|.+.+...+.+++|...|....+.
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344 456777888889999999999999988765 688889999999999999999999999888775
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-10 Score=83.63 Aligned_cols=197 Identities=14% Similarity=0.023 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 036461 63 YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK 142 (369)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (369)
...|.-.|...|+...|..-+++.++.. |.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....++.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3344444455555555555555554432 2233444444455555555555555555544432 1234444444444555
Q ss_pred CCChhHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHH
Q 036461 143 NGKMDEASRLLELMIQIG-VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALS 221 (369)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 221 (369)
.|++++|...|+...... ......+|..+.-+..+.|+.+.|...|++..... +....+...+.......|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 555555555555444431 11123344444444455555555555555554443 2333344444445555555555555
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 036461 222 LYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (369)
+++.....+. ++..+....++.-...|+.+.+-++=..+.+
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555544433 4444444444444445555544444444433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-10 Score=87.18 Aligned_cols=296 Identities=14% Similarity=0.137 Sum_probs=205.2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
..-+.+.+..+.+..++..|++++..-.++. +.+......|..+|....++..|-..|+++... .|...-|
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qY 80 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQY 80 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHH
Confidence 3346778888889999999999999988876 457888999999999999999999999999774 4454444
Q ss_pred HH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 036461 99 NS-LIHGFCYANDWNEAKCLFIEMMDQGVQPNVV--SFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF 175 (369)
Q Consensus 99 ~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (369)
.. -...+.+.+.+.+|+++...|... ++.. +...-.......+++..+..++++.-..| +..+.+...-..
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCll 154 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchhee
Confidence 32 356677888999999999888653 2222 22222334456788888888888765433 445555556666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC-------------cHH------
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP-------------DVV------ 236 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~------ 236 (369)
.+.|+++.|.+-|....+.+.-.....|+..+ +..+.++++.|+++..+++++|++. |..
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 78899999999999988766445566676555 5566789999999999998876432 111
Q ss_pred --hHHHHHH-------HHHhcccHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Q 036461 237 --IYNTLFI-------GLFEIHQVERAFKLFDEMQR-HGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIR 306 (369)
Q Consensus 237 --~~~~l~~-------~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 306 (369)
.-+.++. .+.+.++++.|.+.+-.|.- .....|+.++..+.-.- ..+++.+..+-+.-+.... |-...
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~E 311 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPE 311 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChH
Confidence 1122332 34567888888887777642 12234555555443222 2445666666666666654 45678
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 307 AYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 307 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
+|..++-.||+..-++.|-.++.+-.
T Consensus 312 TFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 88888899999888888888876543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-10 Score=91.92 Aligned_cols=232 Identities=9% Similarity=0.030 Sum_probs=164.5
Q ss_pred CChHHHHHHHHHhHhCC-CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHH
Q 036461 74 GFVDKAKELFLKMKDEN-INP--NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEAS 150 (369)
Q Consensus 74 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (369)
+..+.++.-+.+++... ..| ....|..+...+...|++++|...|++.++.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 46777788888887542 122 24568888889999999999999999999875 336789999999999999999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 036461 151 RLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (369)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (369)
..|+...+.. +.+..++..+..++...|++++|.+.|+...+.. +.+. ........+...++.++|...+.+.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDP-YRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999999875 3357788889999999999999999999998874 2233 22222233455778999999997766542
Q ss_pred CCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc---CC---CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 036461 231 IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH---GV---AADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELD 304 (369)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 304 (369)
.|+...+ .+. ....|+...+ ..+..+.+. .+ +.....|..+...+...|++++|...|+++...+ +++
T Consensus 196 -~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 196 -DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred -CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 2332222 222 2334554443 244444321 11 1234689999999999999999999999999876 344
Q ss_pred HHHH-HHHHHHH
Q 036461 305 IRAY-NCLIDGL 315 (369)
Q Consensus 305 ~~~~-~~l~~~~ 315 (369)
..-+ ..++...
T Consensus 270 ~~e~~~~~~e~~ 281 (296)
T PRK11189 270 FVEHRYALLELA 281 (296)
T ss_pred HHHHHHHHHHHH
Confidence 4433 3344433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-09 Score=83.68 Aligned_cols=348 Identities=14% Similarity=0.088 Sum_probs=181.0
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHH
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 82 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 82 (369)
|+.+++--...+-+....+-.-+..++.+.|++++|+..+..+...+ .++...+..|..++.-.|.+.+|..+
T Consensus 41 AislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 41 AISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-------DAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-------CCCcccchhHHHHHHHHHHHHHHHHH
Confidence 44555544433322222222334566778899999999999888765 57777888888887778888888877
Q ss_pred HHHhHhCCCC-----------CCH--------------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH-
Q 036461 83 FLKMKDENIN-----------PNV--------------VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI- 136 (369)
Q Consensus 83 ~~~~~~~~~~-----------~~~--------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l- 136 (369)
-.+..+.... .|. .--.+|.......-.+.+|+.++.+....+ |.-...+..
T Consensus 114 ~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ 191 (557)
T KOG3785|consen 114 AEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYM 191 (557)
T ss_pred HhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHH
Confidence 6655432100 000 001122222222334677888887777652 344444443
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH--------------HhcC-------
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSM--------------ESMG------- 195 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------~~~~------- 195 (369)
.-+|.+..-++-+.+++.-.++. .+.++...+.......+.=+-..|..-.+.+ .+++
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrng 270 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNG 270 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCC
Confidence 34555666666666666665553 2223333333222222211111111111111 1110
Q ss_pred -----CCc-----hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhH---------------------------
Q 036461 196 -----CKH-----NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIY--------------------------- 238 (369)
Q Consensus 196 -----~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------------------- 238 (369)
+-| -+.+-..++-.|.+.+++.+|..+.+++... .|.....
T Consensus 271 EgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffql 348 (557)
T KOG3785|consen 271 EGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQL 348 (557)
T ss_pred ccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Confidence 000 1122234445566677777777666554321 1211111
Q ss_pred --------------HHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 036461 239 --------------NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELD 304 (369)
Q Consensus 239 --------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 304 (369)
..+..++.-..+++.++..++.+...-. .|....-.+.++++..|++.+|.++|-++....++.+
T Consensus 349 VG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~-NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~ 427 (557)
T KOG3785|consen 349 VGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT-NDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNK 427 (557)
T ss_pred hcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh
Confidence 1223333344455666666655555422 2333333566777778888888888877665443433
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHH-HHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 305 IRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVV-TYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 305 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
..-...|.++|.+.+.++.|+.++-++... .+.. ....+...|.+.+.+=-|-+.|+.+
T Consensus 428 ~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 428 ILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 344455667788888888888777666542 1222 3334445677777776666666654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-10 Score=83.61 Aligned_cols=199 Identities=13% Similarity=-0.007 Sum_probs=148.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYC 211 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (369)
+..-+.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 44556667888888888888888888875 4466777788888888888888888888887775 556777788888888
Q ss_pred hcCChHHHHHHHHHHHhCCC-CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHH
Q 036461 212 KNKEIEGALSLYSEMLSKGI-KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAV 290 (369)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 290 (369)
..|.+++|...|++....-. .-...+|..+..+..+.|+++.|...+++.++... -.+.....+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 88888888888888877522 22345677777777888888888888888877642 34556677777778888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 291 ELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.+++.....+ .++..++...|+.-...|+.+.+-+.=.++.+.
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8888877666 477777777777777788877777766666553
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-09 Score=89.20 Aligned_cols=305 Identities=12% Similarity=0.003 Sum_probs=192.2
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCC-CCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI-NPNV-VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI 136 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (369)
....+..+...+...|+.+.+.+.+........ .++. .........+...|++++|..++++..+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 356677777888888888888777777654311 1122 222233455677899999999999998763 324434432
Q ss_pred HHHHH----hCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh
Q 036461 137 MNELC----KNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK 212 (369)
Q Consensus 137 ~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (369)
...+. ..+....+.+.+.... ...+........+...+...|++++|...+++..... +.+...+..+..++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 22222 2345555555555411 1222234455566778899999999999999999876 5567788889999999
Q ss_pred cCChHHHHHHHHHHHhCCCC-CcH--HhHHHHHHHHHhcccHHHHHHHHHHHHHcCC-CcCHHHH-H--HHHHHHHhCCC
Q 036461 213 NKEIEGALSLYSEMLSKGIK-PDV--VIYNTLFIGLFEIHQVERAFKLFDEMQRHGV-AADTWAY-R--TFIDGLCKNGY 285 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~ 285 (369)
.|++++|...+++....... |+. ..|..+...+...|++++|..++++...... .+..... . .++..+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 99999999999998876332 222 3455788889999999999999999864322 1111111 1 33333444554
Q ss_pred HHHHHHH--H-HHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcc--------cCHHHHHHHHHHHHhc
Q 036461 286 IVEAVEL--F-RTLRILK-YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLI--------ADVVTYNIMIHALCAD 353 (369)
Q Consensus 286 ~~~a~~~--~-~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~ 353 (369)
...+.+. + ....... ...........+.++...|+.+.|...++.+...... ...........++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333332 1 1111110 0111122235677788999999999999887653211 0122233344456789
Q ss_pred CchHHHHHHHHHhh
Q 036461 354 GKMDKARDLFLDME 367 (369)
Q Consensus 354 g~~~~A~~~~~~m~ 367 (369)
|++++|.+.+.+..
T Consensus 321 g~~~~A~~~L~~al 334 (355)
T cd05804 321 GNYATALELLGPVR 334 (355)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999988754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-11 Score=106.28 Aligned_cols=253 Identities=15% Similarity=0.199 Sum_probs=156.8
Q ss_pred HHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036461 41 LFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIE 120 (369)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 120 (369)
++-.+...| +.||..+|..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++......++.+.+.
T Consensus 12 fla~~e~~g------i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----- 79 (1088)
T KOG4318|consen 12 FLALHEISG------ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----- 79 (1088)
T ss_pred HHHHHHHhc------CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----
Confidence 444555556 6888899999999999999998887 8888877777778888888888888888877766
Q ss_pred HHhcCCCCChhhHHHHHHHHHhCCChhH---HHHHHHHHH----HcCCCccHHHH--------------HHHHHHHHhcC
Q 036461 121 MMDQGVQPNVVSFNVIMNELCKNGKMDE---ASRLLELMI----QIGVRPNAFVY--------------NTLMDGFCLTG 179 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~--------------~~l~~~~~~~~ 179 (369)
.|...+|..+..+|...||... +.+.+..+. ..|+......+ ...+......|
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eg 153 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEG 153 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHH
Confidence 5778889999999999988655 222111111 11211111111 11222233344
Q ss_pred ChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc-CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHH
Q 036461 180 RVNRAEELFVSMESMGCKHNVFSYSILINGYCKN-KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLF 258 (369)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (369)
-++.+++++..+...... .+... +++-+... ..+++-..+.....+ .|+..+|.+++.+-...|+.+.|..++
T Consensus 154 lwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 455555555444322100 11111 12222222 223333333333322 467777777777777777777777777
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 036461 259 DEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGR 320 (369)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (369)
.+|.+.|.+.+..-|-.++-+ .++...+..+++-|...|+.|+..|+...+-.+...|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777777777776666665544 67777777777777777777777777777666666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.42 E-value=8e-09 Score=86.78 Aligned_cols=306 Identities=13% Similarity=0.060 Sum_probs=193.4
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc-hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.+..|..+...+...|+.+.+...+....+.... .++ ..........+...|++++|.+.+++..+. .|.+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~ 78 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDD-YPRDLL 78 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHH
Confidence 4556777778888889999988888887765510 112 222333455667789999999999998876 344554
Q ss_pred hHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHH
Q 036461 97 TYNSLIHGFC----YANDWNEAKCLFIEMMDQGVQPN-VVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTL 171 (369)
Q Consensus 97 ~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (369)
.+.. ...+. ..+....+.+.+.... ...|+ ......+...+...|++++|...++...+.. +.+...+..+
T Consensus 79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~l 154 (355)
T cd05804 79 ALKL-HLGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAV 154 (355)
T ss_pred HHHH-hHHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 5442 22222 2455555555555421 12232 3344456678889999999999999999976 4467778889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCC-CchH--HHHHHHHHHHhhcCChHHHHHHHHHHHhCCC-CCcHHhH-H--HHHHH
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGC-KHNV--FSYSILINGYCKNKEIEGALSLYSEMLSKGI-KPDVVIY-N--TLFIG 244 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~ 244 (369)
..++...|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++..
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR 234 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH
Confidence 9999999999999999999876531 1222 3455678889999999999999999865432 1122111 1 22223
Q ss_pred HHhcccHHHHHHH--H-HHHHHcCC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---C-----CHHHHHHHH
Q 036461 245 LFEIHQVERAFKL--F-DEMQRHGV-AADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE---L-----DIRAYNCLI 312 (369)
Q Consensus 245 ~~~~~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~-----~~~~~~~l~ 312 (369)
+...|..+.+..+ + ........ ............++...|+.+.|..+++.+...... - .........
T Consensus 235 ~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A 314 (355)
T cd05804 235 LELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEA 314 (355)
T ss_pred HHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHH
Confidence 3333432222222 1 11111100 111122235667788899999999999998754322 0 122223333
Q ss_pred HHHHcCCCHHHHHHHHHhccc
Q 036461 313 DGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 313 ~~~~~~g~~~~a~~~~~~~~~ 333 (369)
.++...|++++|.+.+.....
T Consensus 315 ~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 315 LYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 456789999999999988765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-08 Score=83.52 Aligned_cols=222 Identities=14% Similarity=0.044 Sum_probs=159.4
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHH
Q 036461 4 AALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 83 (369)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 83 (369)
++..+.+.+ +.+-..++.....-.+...|+.++|..........+ ..+...|..+.-.+....++++|++.|
T Consensus 27 LK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-------~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 27 LKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-------LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-------cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 344455555 345556666666666777888899988888888766 456788888888888888999999999
Q ss_pred HHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC-CC
Q 036461 84 LKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIG-VR 162 (369)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 162 (369)
..+...+ +.|...|.-+.-.-++.++++.....-.++.+.. +.....|..++.++.-.|+...|..+++...+.. ..
T Consensus 99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9988764 4477888877777788888888888777777652 2245567778888888899999999999888764 24
Q ss_pred ccHHHHHHH------HHHHHhcCChHHHHHHHHHHHhcCCCchHH-HHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcH
Q 036461 163 PNAFVYNTL------MDGFCLTGRVNRAEELFVSMESMGCKHNVF-SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV 235 (369)
Q Consensus 163 ~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 235 (369)
|+...+... .....+.|..+.|.+.+...... ..|.. .-..-...+.+.+++++|..++..++.. .||.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn 252 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDN 252 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cchh
Confidence 555554332 23456678888888887766543 12222 2334566778889999999999999887 3555
Q ss_pred HhHH
Q 036461 236 VIYN 239 (369)
Q Consensus 236 ~~~~ 239 (369)
..|.
T Consensus 253 ~~Yy 256 (700)
T KOG1156|consen 253 LDYY 256 (700)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-08 Score=83.45 Aligned_cols=182 Identities=15% Similarity=0.101 Sum_probs=111.2
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|++.-.++...+ |.+..++.+=+-++.+.+++++|+.+.+.-... ..+...+..-+.+..+.+..++|+
T Consensus 29 e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--------~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 29 EEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--------LVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred HHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--------hhcchhhHHHHHHHHHcccHHHHH
Confidence 36777788888765 667778888888888999999988665543221 111112233455666778888888
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------------------------CChhhH
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ---------------------------PNVVSF 133 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~~~ 133 (369)
..++-... .+..+...-...+.+.+++++|..+|+.+.+.+.+ ....+|
T Consensus 100 k~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 100 KTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY 175 (652)
T ss_pred HHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence 87772221 13345566667778888888888888887544211 012234
Q ss_pred HHHHH---HHHhCCChhHHHHHHHHHHHcC-------------CCccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036461 134 NVIMN---ELCKNGKMDEASRLLELMIQIG-------------VRPNAF-VYNTLMDGFCLTGRVNRAEELFVSMESMG 195 (369)
Q Consensus 134 ~~l~~---~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (369)
..+.+ .+...|++.+|+++++...+.+ +..... .-..+...+-..|+..+|..++..+.+..
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 33332 4556788888888888773221 000111 11234445667788888888888877664
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-12 Score=73.39 Aligned_cols=49 Identities=49% Similarity=0.931 Sum_probs=29.6
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 036461 58 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 106 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (369)
||..+|+.++.+|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666666666666666666665554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-08 Score=77.20 Aligned_cols=305 Identities=11% Similarity=0.065 Sum_probs=223.3
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.++.-..-+...+...|++..|+.-|....+.+ |.+-.++..-...|...|+...|+.=+.++++. +||-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~ 106 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFM 106 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-------chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHH
Confidence 344555667788889999999999999998865 344555666677888899999999999988874 56543
Q ss_pred hH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--Chhh------------HHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 036461 97 TY-NSLIHGFCYANDWNEAKCLFIEMMDQGVQP--NVVS------------FNVIMNELCKNGKMDEASRLLELMIQIGV 161 (369)
Q Consensus 97 ~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (369)
.- ..-...+.++|.+++|..-|+..++....- .... ....+..+...|+...|+.....+++..
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~- 185 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ- 185 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-
Confidence 32 223456788999999999999998764211 1111 2223445667889999999999998874
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHh----
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVI---- 237 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---- 237 (369)
+-+...+..-..+|...|++..|+.-++...+.. ..+...+-.+-..+...|+.+.++...++.++. .||...
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~ 262 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF 262 (504)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH
Confidence 4477788888899999999999999888887765 455666667777888899999999998888875 455432
Q ss_pred HHHH---------HHHHHhcccHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 036461 238 YNTL---------FIGLFEIHQVERAFKLFDEMQRHGVAAD---TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDI 305 (369)
Q Consensus 238 ~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 305 (369)
|..| +......++|.++....+...+...... ...+..+-.++...|++.+|++...++++.. +.|.
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv 341 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHH
Confidence 2211 1223445677777777777776543211 2234556667778899999999999998765 5568
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 036461 306 RAYNCLIDGLCKSGRLKIAWELFRSLPRGV 335 (369)
Q Consensus 306 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 335 (369)
.++..-..+|.-...++.|+.-|+.+.+.+
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888888899998899999999998887653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.6e-12 Score=72.10 Aligned_cols=49 Identities=47% Similarity=0.976 Sum_probs=34.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 036461 93 PNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELC 141 (369)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (369)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666777777777777777777777777777777777777777766664
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-10 Score=90.56 Aligned_cols=251 Identities=13% Similarity=0.051 Sum_probs=162.8
Q ss_pred HHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChh
Q 036461 68 DGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMD 147 (369)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (369)
+-+.-.|++..++.-.+ ......+.+......+.+++...|+++.++ .++... ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchH
Confidence 44556788888886666 333322223444556778888888877544 333333 3566666666655554445555
Q ss_pred HHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 148 EASRLLELMIQIGVR-PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 148 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
.+..-++........ .+.........++...|++++|++++... .+.......+.++.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555544433322 23333333445667789999998887653 34566677888899999999999999998
Q ss_pred HhCCCCCcHHhHHHHHHHHHh----cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 036461 227 LSKGIKPDVVIYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE 302 (369)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 302 (369)
.+.+ +..+...+..++.. .+.+.+|..+|+++.+. .++++.+.+.+..+....|++++|..++.+....+ +
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 8753 33444455555443 23588999999997665 56788888889999999999999999999987665 5
Q ss_pred CCHHHHHHHHHHHHcCCCH-HHHHHHHHhcccC
Q 036461 303 LDIRAYNCLIDGLCKSGRL-KIAWELFRSLPRG 334 (369)
Q Consensus 303 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 334 (369)
.++.++..++.+....|+. +.+.+.+.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5777888888888888887 6677888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.3e-10 Score=89.66 Aligned_cols=249 Identities=13% Similarity=0.058 Sum_probs=168.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChH
Q 036461 103 HGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182 (369)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (369)
+-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34445788888887666 322222223445566788899999877544 4443333 666666666666555445566
Q ss_pred HHHHHHHHHHhcCCC-chHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHH
Q 036461 183 RAEELFVSMESMGCK-HNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 261 (369)
Q Consensus 183 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (369)
.+..-++........ .+..........+...|++++|+++++.. .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666555433322 34444444456677889999999988653 35667778889999999999999999999
Q ss_pred HHcCCCcCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcc
Q 036461 262 QRHGVAADTWAYRTFIDGLCK----NGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLI 337 (369)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 337 (369)
.+. ..| .+...+..++.. ...+.+|..+|+++.+. .++++.+.+.++.++...|++++|.+++.+....+.
T Consensus 158 ~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~- 232 (290)
T PF04733_consen 158 QQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP- 232 (290)
T ss_dssp HCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-
T ss_pred Hhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-
Confidence 875 334 344555554432 34699999999998764 468899999999999999999999999999887653
Q ss_pred cCHHHHHHHHHHHHhcCch-HHHHHHHHHhh
Q 036461 338 ADVVTYNIMIHALCADGKM-DKARDLFLDME 367 (369)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~ 367 (369)
-++.+...++.+....|+. +.+.+++.++.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 3677888889888898988 66777777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-07 Score=77.51 Aligned_cols=336 Identities=11% Similarity=0.111 Sum_probs=190.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.|...+..+.++|++......|++.+..-+ +.....+|...+.-....+-++-+..+|++.++- ++..-+.
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLp-----vtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~ee 174 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALP-----VTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREE 174 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCc-----hHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHH
Confidence 455555556666666666666666555431 2223445555555555555555555555555542 2223444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc----------------------------------------CC--CCC--hhhHHHH
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQ----------------------------------------GV--QPN--VVSFNVI 136 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~----------------------------------------~~--~~~--~~~~~~l 136 (369)
.+..++..+++++|.+.+...... |+ -+| ...|..|
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence 445555555555555444443221 11 112 1247778
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----------------CC------hHHHHHHHHHHHhc
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT----------------GR------VNRAEELFVSMESM 194 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~------~~~a~~~~~~~~~~ 194 (369)
..-|.+.|.++.|..+|++..+.- .+..-|..+.++|+.- ++ ++-....|+.+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 888999999999999998887753 2333343333333211 11 11222222222211
Q ss_pred C-------------------------------------------CCc------hHHHHHHHHHHHhhcCChHHHHHHHHH
Q 036461 195 G-------------------------------------------CKH------NVFSYSILINGYCKNKEIEGALSLYSE 225 (369)
Q Consensus 195 ~-------------------------------------------~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (369)
. +.| -...|..+...|-..|+.+.|..+|++
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 0 000 112355666667777778888888877
Q ss_pred HHhCCCCCc---HHhHHHHHHHHHhcccHHHHHHHHHHHHHcC-----------CCc------CHHHHHHHHHHHHhCCC
Q 036461 226 MLSKGIKPD---VVIYNTLFIGLFEIHQVERAFKLFDEMQRHG-----------VAA------DTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 226 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~l~~~~~~~g~ 285 (369)
......+-- ..+|..-...-.+..+++.|++++++....- .++ +...|..++..-...|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 776533211 2334444445556677777887777664321 011 22345555555566788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCH-HHHHHHHHHHHh---cCchHHHHH
Q 036461 286 IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADV-VTYNIMIHALCA---DGKMDKARD 361 (369)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~ 361 (369)
++....+|+++.+..+ .++......+..+-.+.-++++.++|++-+..-..|+. ..|+..+..+.+ .-+.+.|+.
T Consensus 493 festk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 8888888888887764 34555555555566777789999999988776444554 478877776654 356888999
Q ss_pred HHHHhhc
Q 036461 362 LFLDMEA 368 (369)
Q Consensus 362 ~~~~m~~ 368 (369)
+|++..+
T Consensus 572 LFEqaL~ 578 (835)
T KOG2047|consen 572 LFEQALD 578 (835)
T ss_pred HHHHHHh
Confidence 9988654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-07 Score=77.02 Aligned_cols=198 Identities=13% Similarity=0.000 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHH
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN 99 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (369)
....+=+..+...|++++|.+...++...+ |.+...+..-+.++.+.+++++|+.+.+.-... ..+...+-
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~f 83 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFF 83 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhH
Confidence 344455677888999999999999999875 566778888888999999999999666543221 11111112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc----------------
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRP---------------- 163 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------- 163 (369)
.-+.+..+.+..++|+..++-.. +.+..+...-...+.+.|++++|..+|+.+.+.+.+.
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 23456668999999999998322 1234477777889999999999999999986543110
Q ss_pred -----------cHHHHHH---HHHHHHhcCChHHHHHHHHHHHhcC-------CCc------hH-HHHHHHHHHHhhcCC
Q 036461 164 -----------NAFVYNT---LMDGFCLTGRVNRAEELFVSMESMG-------CKH------NV-FSYSILINGYCKNKE 215 (369)
Q Consensus 164 -----------~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~------~~-~~~~~l~~~~~~~~~ 215 (369)
...+|.. ..-.+...|++.+|+++++...+.+ -.. .. .+-..+.-++-..|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 0112322 2335567899999999999883221 001 11 112334555677899
Q ss_pred hHHHHHHHHHHHhCC
Q 036461 216 IEGALSLYSEMLSKG 230 (369)
Q Consensus 216 ~~~a~~~~~~~~~~~ 230 (369)
.++|..++...++.+
T Consensus 240 t~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN 254 (652)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999999988764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-07 Score=78.74 Aligned_cols=96 Identities=16% Similarity=0.087 Sum_probs=77.7
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
+.|+..|-+-+... |+|-..|..-..++...|++++|++=-.+..+.. |.-+..|.....++.-.|++++|+
T Consensus 19 ~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-------p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-------PDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred HHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-------CchhhHHHHhHHHHHhcccHHHHH
Confidence 36888888888876 6688889999999999999999988888777755 334788999999999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHH
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGF 105 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (369)
..|.+-++.. +.|...+..+..++
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9999988762 34666666666665
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8e-08 Score=75.48 Aligned_cols=322 Identities=13% Similarity=0.078 Sum_probs=178.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHH
Q 036461 26 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF 105 (369)
Q Consensus 26 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (369)
++-+....++..|+.+++--...+. .....+-.-+..++.+.|++++|+..|..+.+. -.++...+..|..++
T Consensus 29 Ledfls~rDytGAislLefk~~~~~------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCK 101 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHH
Confidence 5567778899999999998776541 112233334567888999999999999998875 456777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC------------------------------ChhHHHHHHHH
Q 036461 106 CYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG------------------------------KMDEASRLLEL 155 (369)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------~~~~a~~~~~~ 155 (369)
.-.|.+.+|..+-.+..+ ++-.-..++....+.+ .+.+|+.+|..
T Consensus 102 FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 778888888877665432 1112222222223333 44555666655
Q ss_pred HHHcCCCccHHHHHH-HHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCC--
Q 036461 156 MIQIGVRPNAFVYNT-LMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK-- 232 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 232 (369)
.+..+ |+-...+. +.-+|.+..-++-+.++++...+.- +.+..+.+..+....+.=+-..|..-.+.+.+.+-.
T Consensus 177 vL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 177 VLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred HHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 55432 33333332 2334555556666666666655442 344444554444444433333333334444332110
Q ss_pred C-----------------------------cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC
Q 036461 233 P-----------------------------DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (369)
Q Consensus 233 ~-----------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (369)
| -+..-..|+..|.+.++..+|..+.+++.- .++.-|-.-.-.....
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAAL 329 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHh
Confidence 0 011112344556777888888877665532 1222221111112222
Q ss_pred CC-------HHHHHHHHHHHHHcC-----------------------------------CCCCHHHHHHHHHHHHcCCCH
Q 036461 284 GY-------IVEAVELFRTLRILK-----------------------------------YELDIRAYNCLIDGLCKSGRL 321 (369)
Q Consensus 284 g~-------~~~a~~~~~~~~~~~-----------------------------------~~~~~~~~~~l~~~~~~~g~~ 321 (369)
|+ ..-|.+.|+-.-..+ +..|......+.++++..|.+
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny 409 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNY 409 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcCh
Confidence 21 222333333221111 011111123467788889999
Q ss_pred HHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 322 KIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
.+|.++|-++....++.+......|.++|.+.++++-|..++-++
T Consensus 410 ~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 410 VEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 999999988877655534444455668999999999998887654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-09 Score=90.55 Aligned_cols=219 Identities=16% Similarity=0.097 Sum_probs=174.4
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChH
Q 036461 138 NELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (369)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (369)
.-+.+.|++.+|.-.|+...+.. |-+...|..|.......++-..|+..+.++.+.. +.+..+...|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34667899999999999999876 4578899999999999999999999999999886 677888899999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHH-----------HHHHhcccHHHHHHHHHHH-HHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 218 GALSLYSEMLSKGIKPDVVIYNTLF-----------IGLFEIHQVERAFKLFDEM-QRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
.|...++..+...++ |..+. ..+..........++|-++ ...+..+|+.+...|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999998765321 00000 1112222333444455444 344545788899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCH-HHHHHHHHHHHhcCchHHHHHHHH
Q 036461 286 IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADV-VTYNIMIHALCADGKMDKARDLFL 364 (369)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 364 (369)
+++|...|+.++... |.|...||.|...+....+.++|+..|+++++. .|+. .+...|.-+|...|.|++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999999876 668889999999999999999999999999885 5654 466778889999999999998876
Q ss_pred Hh
Q 036461 365 DM 366 (369)
Q Consensus 365 ~m 366 (369)
..
T Consensus 523 ~A 524 (579)
T KOG1125|consen 523 EA 524 (579)
T ss_pred HH
Confidence 54
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-07 Score=88.31 Aligned_cols=307 Identities=10% Similarity=-0.016 Sum_probs=191.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCC--C----CCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDEN--I----NPN--VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV--- 130 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 130 (369)
........+...|+++++...+......- . .+. ......+...+...|++++|...+++....-...+.
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR 490 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence 33445556667889999988888775421 0 111 112223345566789999999999887763111121
Q ss_pred -hhHHHHHHHHHhCCChhHHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCC--c
Q 036461 131 -VSFNVIMNELCKNGKMDEASRLLELMIQI----GV-RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM----GCK--H 198 (369)
Q Consensus 131 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~ 198 (369)
...+.+...+...|++++|...+++.... |. .........+...+...|+++.|...+++.... +.. +
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 23445566677889999999888887643 11 111234455667788899999999988876542 211 1
Q ss_pred -hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC--CCC--cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC--CCcCHH
Q 036461 199 -NVFSYSILINGYCKNKEIEGALSLYSEMLSKG--IKP--DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG--VAADTW 271 (369)
Q Consensus 199 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 271 (369)
....+..+...+...|++++|...+.+..... ..+ ....+..+.......|+++.|...+....... ......
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 22334455666777899999998888876531 111 23344456667778899999998888775421 111111
Q ss_pred H----HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHhcccC----Cccc-C
Q 036461 272 A----YRTFIDGLCKNGYIVEAVELFRTLRILKYELD---IRAYNCLIDGLCKSGRLKIAWELFRSLPRG----VLIA-D 339 (369)
Q Consensus 272 ~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~ 339 (369)
. ....+..+...|+.+.|...+........... ...+..+..++...|++++|...++++... +..+ .
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 1 01122444567889998888776553211111 111345677888999999999999887652 2222 2
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 340 VVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 340 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
..+...+..++.+.|+.++|...+.+..+
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24566777888999999999999887653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-09 Score=86.80 Aligned_cols=225 Identities=14% Similarity=0.110 Sum_probs=160.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHH
Q 036461 25 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHG 104 (369)
Q Consensus 25 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (369)
....+.+.|++.+|.-.|+...+.+ |-+...|..|.......++-..|+..+++..+.. +-|......|.-.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVS 362 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVS 362 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 3445678888999999999988887 6678899999988888888889999998888863 3367778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH---------HHHHhCCChhHHHHHHHH-HHHcCCCccHHHHHHHHHH
Q 036461 105 FCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIM---------NELCKNGKMDEASRLLEL-MIQIGVRPNAFVYNTLMDG 174 (369)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~ 174 (369)
|...|.-..|.+.++..+...++ . .|.... ..+.....+....++|-+ ....+..+|+.+...|.-.
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~--y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPK--Y-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCcc--c-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 88888888899998888764211 0 000000 011111122333444433 3444444677777788888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcH-HhHHHHHHHHHhcccHHH
Q 036461 175 FCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV-VIYNTLFIGLFEIHQVER 253 (369)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 253 (369)
|.-.|++++|...|+.++... |.|...||.|...+....+.++|+..|.+.++. .|+. .+...|..+|...|.+++
T Consensus 440 y~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHH
Confidence 888888888888888888775 667778888888888888888888888888875 4443 355567777888888888
Q ss_pred HHHHHHHHHH
Q 036461 254 AFKLFDEMQR 263 (369)
Q Consensus 254 a~~~~~~~~~ 263 (369)
|...|-.++.
T Consensus 517 A~~hlL~AL~ 526 (579)
T KOG1125|consen 517 AVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHH
Confidence 8887766543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.1e-08 Score=77.78 Aligned_cols=214 Identities=13% Similarity=0.035 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC-ChHHHHHHHHHhHhCCCCCCHHhHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG-FVDKAKELFLKMKDENINPNVVTYN 99 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (369)
++..+-..+...++.++|+.+.+++++.+ |.+..+|+....++...| ++++++..++++...+ +.+..+|+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~ 110 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWH 110 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhH
Confidence 45566666777788889999999988876 455667777777777777 5788888888888764 33666777
Q ss_pred HHHHHHHhcCCH--HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 036461 100 SLIHGFCYANDW--NEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCL 177 (369)
Q Consensus 100 ~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (369)
....++.+.+.. ++++.+++++++...+ +..+|.....++...|+++++++.++++++.+.. +..+|+.....+.+
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~ 188 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHh
Confidence 666556666653 6678888888776533 7778888888888888888888888888887643 66666666555544
Q ss_pred c---CCh----HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc----CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 036461 178 T---GRV----NRAEELFVSMESMGCKHNVFSYSILINGYCKN----KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF 246 (369)
Q Consensus 178 ~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (369)
. |.. ++.+.+..++.... +.+...|+.+...+... +...+|...+.+....++. +......|+..|.
T Consensus 189 ~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~ 266 (320)
T PLN02789 189 SPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC 266 (320)
T ss_pred ccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence 4 222 35566665655554 55666776666666552 2344566666665554322 4445555555554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.9e-07 Score=70.45 Aligned_cols=285 Identities=11% Similarity=0.028 Sum_probs=210.1
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchh-hHHHHHHHHHhcCChHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV-TYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~ 80 (369)
+|+.-|...++.+ |.+-.++..-...|...|+...|+.=+.+..+. +||.. .-..-...+.++|.+++|.
T Consensus 56 DALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------KpDF~~ARiQRg~vllK~Gele~A~ 126 (504)
T KOG0624|consen 56 DALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--------KPDFMAARIQRGVVLLKQGELEQAE 126 (504)
T ss_pred HHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--------CccHHHHHHHhchhhhhcccHHHHH
Confidence 3555555555432 233334444556888999999999999999884 57643 3344566788999999999
Q ss_pred HHHHHhHhCCCCCC--HHh------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCh
Q 036461 81 ELFLKMKDENINPN--VVT------------YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKM 146 (369)
Q Consensus 81 ~~~~~~~~~~~~~~--~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (369)
.=|+.+++.....+ ... ....+..+...|+...|+..+..+++. .+.+...+..-..+|...|++
T Consensus 127 ~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~ 205 (504)
T KOG0624|consen 127 ADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEP 205 (504)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcH
Confidence 99999988632111 111 123344566789999999999999986 456888899999999999999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHH-HH---HH---H------HHHHhhc
Q 036461 147 DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVF-SY---SI---L------INGYCKN 213 (369)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~---~~---l------~~~~~~~ 213 (369)
..|+.-++...+... .+..++.-+-..+...|+.+.++...++..+.+ |+-. .| -. + +......
T Consensus 206 k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~ 282 (504)
T KOG0624|consen 206 KKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEE 282 (504)
T ss_pred HHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999888877753 356666677888899999999999999998774 4322 22 11 1 2234457
Q ss_pred CChHHHHHHHHHHHhCCCCCcHH---hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHH
Q 036461 214 KEIEGALSLYSEMLSKGIKPDVV---IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAV 290 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 290 (369)
+++.++++..+...+..+..... .+..+-.++...+++.+|++...++++.. +.|..++..-..+|.-...++.|+
T Consensus 283 ~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI 361 (504)
T KOG0624|consen 283 KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAI 361 (504)
T ss_pred hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHH
Confidence 78888888888888875442232 34456677788899999999999998853 335888888899999999999999
Q ss_pred HHHHHHHHcC
Q 036461 291 ELFRTLRILK 300 (369)
Q Consensus 291 ~~~~~~~~~~ 300 (369)
.-|+.+.+.+
T Consensus 362 ~dye~A~e~n 371 (504)
T KOG0624|consen 362 HDYEKALELN 371 (504)
T ss_pred HHHHHHHhcC
Confidence 9999998775
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.8e-08 Score=83.23 Aligned_cols=312 Identities=14% Similarity=-0.012 Sum_probs=173.8
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
++++.+++..+.+ +-|+.+...+.--|+-.++.+.|.+...+..+.+ ...+...|..|.-++...+++..|+.
T Consensus 462 kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~------~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 462 KSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALN------RGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 4677777777776 4555555666666777788888888888887764 24567778888888888888888888
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc--
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI-- 159 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 159 (369)
+.+..... .+.|......-++.-..-++.++++.....+... .+ +..... ..++-....+....+.-.
T Consensus 535 vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~-we-~~~~~q-------~~~~~g~~~~lk~~l~la~~ 604 (799)
T KOG4162|consen 535 VVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL-WE-AEYGVQ-------QTLDEGKLLRLKAGLHLALS 604 (799)
T ss_pred HHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH-HH-hhhhHh-------hhhhhhhhhhhhcccccCcc
Confidence 88777654 1112222222223333356666666655554431 00 000000 000001111111111000
Q ss_pred CCCccHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc
Q 036461 160 GVRPNAFVYNTLMDGFCL---TGRVNRAEELFVSMESMGCK--HNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 234 (369)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (369)
.......++..+...... .-..+..+..+......... .....|......+.+.++.++|...+.+..... +..
T Consensus 605 q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~ 683 (799)
T KOG4162|consen 605 QPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLS 683 (799)
T ss_pred cccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhh
Confidence 011112222222222111 11111111111111100000 012235556666777777777777777766653 335
Q ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHcCCCCCHHHHHHHH
Q 036461 235 VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVE--LFRTLRILKYELDIRAYNCLI 312 (369)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~ 312 (369)
...|......+...|..++|.+.|......+ |-++.....+..++.+.|+..-|.. ++..+.+.+ +.+...|..+.
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG 761 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLG 761 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 5566666677777788888888887777653 2356677777778888877666666 777777776 66778888888
Q ss_pred HHHHcCCCHHHHHHHHHhccc
Q 036461 313 DGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 313 ~~~~~~g~~~~a~~~~~~~~~ 333 (369)
..+.+.|+.++|.+.|....+
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHccchHHHHHHHHHHHh
Confidence 888888888888887776654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-08 Score=75.98 Aligned_cols=293 Identities=15% Similarity=0.116 Sum_probs=206.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH-HHHH
Q 036461 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNV-IMNE 139 (369)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~ 139 (369)
.-+.+.+.-+.+..++++|++++..-.++. +.+......|..+|....++..|-..++++-.. .|...-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 346777777888899999999998887763 337778888999999999999999999999775 455555543 3567
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCccHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChH
Q 036461 140 LCKNGKMDEASRLLELMIQIGVRPNAF--VYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (369)
+.+.+.+..|+++...|.+. ++.. ....-.......+++..+..++++....+ +..+.+.......+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 78899999999999988653 2222 22222223456788889999988877543 4455556666678899999
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCc-------------CHH--------HHHHH
Q 036461 218 GALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA-------------DTW--------AYRTF 276 (369)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~--------~~~~l 276 (369)
.|.+-|+...+-+.--....|+..+ +..+.++++.|++...+++++|++. |.. .-..+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 9999999999864443456676554 4556789999999999988876432 211 11222
Q ss_pred H-------HHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHH
Q 036461 277 I-------DGLCKNGYIVEAVELFRTLRIL-KYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIH 348 (369)
Q Consensus 277 ~-------~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 348 (369)
+ ..+.+.|+++.|.+.+-.|... ....|+.+...+.-.-. .+++.+..+-+.-+...++ ....||..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHH
Confidence 2 3345778999998888777522 22457777766654322 3555555555555555543 45789999999
Q ss_pred HHHhcCchHHHHHHHHH
Q 036461 349 ALCADGKMDKARDLFLD 365 (369)
Q Consensus 349 ~~~~~g~~~~A~~~~~~ 365 (369)
.|++..-++-|-.++-+
T Consensus 319 lyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhhhHHHhHHHHHHhh
Confidence 99999888888777643
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-07 Score=75.87 Aligned_cols=214 Identities=12% Similarity=0.033 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG-KMDEASRLLELMIQIGVRPNAFVYNTLMDGFC 176 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (369)
+..+-..+...+..++|+.+..++++..+ -+..+|+....++...| ++++++..++.+.+.+ +.+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 33344445555666677777766666532 23445554444555555 4566666666666654 234445554444444
Q ss_pred hcCCh--HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc---ccH
Q 036461 177 LTGRV--NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEI---HQV 251 (369)
Q Consensus 177 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 251 (369)
+.|+. +++..+++.+.+.+ +.+..+|+....++...|+++++++.+.++++.++. +...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 45542 45566665665554 445556666666666666666666666666665443 444444444333332 111
Q ss_pred ----HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 036461 252 ----ERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN----GYIVEAVELFRTLRILKYELDIRAYNCLIDGLCK 317 (369)
Q Consensus 252 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (369)
++.......++... +-|...|+.+...+... +...+|..++.+....+ +.+...+..|+..|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 23444444444432 22444454444444442 22334555555544432 3344455555555543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-06 Score=83.12 Aligned_cols=301 Identities=13% Similarity=0.024 Sum_probs=189.6
Q ss_pred HHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCC--hhhHHHHHH
Q 036461 67 IDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGV------QPN--VVSFNVIMN 138 (369)
Q Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~ 138 (369)
.......|+++.+..+++.+.......++.........+...|+++++..++......-. .+. ......+..
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 344555678887777776653221111233334455566778999999999988754311 111 112223344
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---Cc--hHHHHHHHHHH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPN----AFVYNTLMDGFCLTGRVNRAEELFVSMESMGC---KH--NVFSYSILING 209 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~ 209 (369)
.+...|++++|...++...+.-...+ ....+.+...+...|++++|...+.+...... .+ ...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 56678999999999998876321112 13445566777889999999999988764310 11 12345566777
Q ss_pred HhhcCChHHHHHHHHHHHhC----CCC--C-cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC--CCc--CHHHHHHHHH
Q 036461 210 YCKNKEIEGALSLYSEMLSK----GIK--P-DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG--VAA--DTWAYRTFID 278 (369)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 278 (369)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88999999999998887653 211 1 12334455666777899999999998875421 112 2334445666
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHHcCCCHHHHHHHHHhcccCCcccC---HHHHHHHHHH
Q 036461 279 GLCKNGYIVEAVELFRTLRILKYEL-DIRAY-----NCLIDGLCKSGRLKIAWELFRSLPRGVLIAD---VVTYNIMIHA 349 (369)
Q Consensus 279 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 349 (369)
.+...|++++|...++.+....... ....+ ...+..+...|+.+.|...+........... ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7888999999999998886431111 11111 1122445568999999999877654321111 1124567778
Q ss_pred HHhcCchHHHHHHHHHhh
Q 036461 350 LCADGKMDKARDLFLDME 367 (369)
Q Consensus 350 ~~~~g~~~~A~~~~~~m~ 367 (369)
+...|++++|...+++..
T Consensus 701 ~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 701 QILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 899999999999988764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-08 Score=86.51 Aligned_cols=239 Identities=17% Similarity=0.113 Sum_probs=189.1
Q ss_pred CCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036461 15 CEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN 94 (369)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (369)
.+|-...-..+...+...|-...|+.+|+++ ..|..++.+|...|+..+|..+..+..+. +|+
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl---------------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d 456 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL---------------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPD 456 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCc
Confidence 4455556677888999999999999999974 45788899999999999999999888774 689
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 036461 95 VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDG 174 (369)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (369)
+..|..++.......-+++|.++.+..... .-..+.....+.+++.++.+.++.-.+.+ +....+|..+..+
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ 528 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCA 528 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHH
Confidence 999999988887777788898888776432 22223333445789999999999988875 4577889999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHH
Q 036461 175 FCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERA 254 (369)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (369)
..+.++++.|.+.|....... +.+...|+.+-.+|.+.++-.+|...+.+..+.+ .-+...|-..+....+.|.++.|
T Consensus 529 ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHH
Confidence 999999999999999998875 6677899999999999999999999999999976 33566677777778899999999
Q ss_pred HHHHHHHHHcC-CCcCHHHHHHHHHHH
Q 036461 255 FKLFDEMQRHG-VAADTWAYRTFIDGL 280 (369)
Q Consensus 255 ~~~~~~~~~~~-~~~~~~~~~~l~~~~ 280 (369)
++.+.++.... ...|..+...++...
T Consensus 607 ~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 607 IKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 99999876521 112444444444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-06 Score=70.89 Aligned_cols=150 Identities=14% Similarity=0.082 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 036461 216 IEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA-DTWAYRTFIDGLCKNGYIVEAVELFR 294 (369)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 294 (369)
.+.....+.++...-..--..+|..++....+....+.|..+|.++.+.+..+ +.....+++..++ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44445555555543222123356677777778888999999999998876666 5556667776555 788899999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccC--HHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 295 TLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIAD--VVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
--.+.- ..++......+.-+.+.++-..|..+|++....++.|+ ..+|..++.--..-|+...++++-+++.
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 766542 34555556778888889999999999999988755554 4689999988888899999888877654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-07 Score=86.46 Aligned_cols=230 Identities=14% Similarity=0.086 Sum_probs=173.6
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc-CCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHH
Q 036461 127 QPNVVSFNVIMNELCKNGKMDEASRLLELMIQI-GVR---PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFS 202 (369)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (369)
+-+...|...|......++.++|.++.++++.. ++. --...|.++++.-...|.-+...++|+++.+.. .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 335567888888888889999999999888753 111 123467777777777888888889999988763 34566
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHH
Q 036461 203 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVA-ADTWAYRTFIDGLC 281 (369)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 281 (369)
|..|...|.+.+..++|.++++.|.++ +.-....|...+..+.+..+-+.|..++.++++.=.. -........++.-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 888888999999999999999999886 2246678888888888888889999999888875211 13445666677777
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCH--HHHHHHHHHHHhcCchHHH
Q 036461 282 KNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADV--VTYNIMIHALCADGKMDKA 359 (369)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A 359 (369)
+.|+.+.+..+|+...... |--...|+.+++.-.++|+.+.+..+|+++...++.|.. ..|...+..--..|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 8899999999999888654 557788999999999999999999999999888777654 3555555555555665443
Q ss_pred H
Q 036461 360 R 360 (369)
Q Consensus 360 ~ 360 (369)
.
T Consensus 1691 E 1691 (1710)
T KOG1070|consen 1691 E 1691 (1710)
T ss_pred H
Confidence 3
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-07 Score=85.00 Aligned_cols=210 Identities=11% Similarity=0.049 Sum_probs=94.0
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.+...|...|..+...++.+.|.+++++++..-...- -..-...|.+++..-..-|.-+...++|+++.+. -..-.
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE--eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE--EEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch--hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 3334555555555555555555555555544320000 0001123444444444444445555555555443 11123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-ccHHHHHHHHHHH
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVR-PNAFVYNTLMDGF 175 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 175 (369)
.|..|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.++++.-.+ -......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 3444555555555555555555555443 1223444555555555555555555555554443110 0112222233333
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCC
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK 232 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (369)
.+.|+.+++..+|+-..... |-....|+..+..-.++|+.+.+..+|+++...++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 44555555555555544432 333444555555555555555555555555554433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-08 Score=87.01 Aligned_cols=214 Identities=13% Similarity=0.088 Sum_probs=136.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK 212 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (369)
-..+...+...|-...|..++++.. .|..++.+|...|+..+|..+..+..+. +|++..|..+......
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3445566666777777777776543 3455667777777777777777776663 6777777777766666
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHH
Q 036461 213 NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVEL 292 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (369)
..-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 66666777666654432 11112222233567777777776655543 23455666666666777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 293 FRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
|....... |.+...||.+..+|.+.|+-.+|...+++..+.+ .-+...|...+.....-|.+++|++.+.++.
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 77766554 4456677777777777777777777777777655 3345566666666777777777777776664
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.8e-08 Score=76.35 Aligned_cols=185 Identities=11% Similarity=-0.050 Sum_probs=121.1
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccch---hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT---VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN 94 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (369)
.+..+..+...+.+.|+++.|+..|+++.... |.++ .++..+..++...|++++|+..++++.+.... +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~ 103 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-------PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-H 103 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-C
Confidence 45567777778888888888888888887765 2222 46677788888888888888888888764211 2
Q ss_pred H---HhHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc
Q 036461 95 V---VTYNSLIHGFCYA--------NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRP 163 (369)
Q Consensus 95 ~---~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (369)
. .++..+..++... |++++|.+.++.+....+. +...+..+..... .. ...
T Consensus 104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~------- 165 (235)
T TIGR03302 104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRL------- 165 (235)
T ss_pred CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHH-------
Confidence 2 2344455555543 6677888888887765321 2222221111100 00 000
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELFVSMESMG--CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
......+...+.+.|++++|...++.+.... .+.....+..+..++...|++++|..+++.+...
T Consensus 166 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 -AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0111245667889999999999999987663 1234567888999999999999999998888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-07 Score=83.01 Aligned_cols=171 Identities=13% Similarity=0.132 Sum_probs=117.5
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
+.+..+|..|+..+...+++++|+++.+...+.. |.....|..+...+.+.++..++.-+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-------P~~i~~yy~~G~l~~q~~~~~~~~lv------------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-------KKSISALYISGILSLSRRPLNDSNLL------------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CcceehHHHHHHHHHhhcchhhhhhh-------------
Confidence 3456688889998889999999999998777754 33455566666667777765554444
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF 175 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (369)
.++.......++.....++..+... .-+...+..++.+|-+.|+.+++..+|+++++.. +-|+.+.+.+...|
T Consensus 88 ----~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ 160 (906)
T PRK14720 88 ----NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSY 160 (906)
T ss_pred ----hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 2333333444554444445555543 2344577788888888899999999999988887 55788888888888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
... +.++|.+++.++... +...+++..+..+|.++...
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 888 888888888877643 44444556666666666554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-06 Score=75.38 Aligned_cols=311 Identities=14% Similarity=0.114 Sum_probs=182.1
Q ss_pred HHHHHHHHcCCC--cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHH
Q 036461 5 ALFMKLRVFGCE--PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 82 (369)
Q Consensus 5 ~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 82 (369)
++.+...+.+++ -|++.....+.++...+-+.+-+++++++.-.+.. +..+...-+.|+-...+ -+..+..++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~----Fse~~nLQnLLiLtAik-ad~trVm~Y 1042 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV----FSENRNLQNLLILTAIK-ADRTRVMEY 1042 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc----cccchhhhhhHHHHHhh-cChHHHHHH
Confidence 455555555433 35566666777787888888888888887755432 12334444555544443 345556666
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 036461 83 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVR 162 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (369)
.+++...+.+ + +...+...+-+++|..+|++.- .+......++. ..+..+.|.++-++..
T Consensus 1043 I~rLdnyDa~-~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n----- 1102 (1666)
T KOG0985|consen 1043 INRLDNYDAP-D------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN----- 1102 (1666)
T ss_pred HHHhccCCch-h------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-----
Confidence 6666554221 2 2344555666777777777653 23344444443 2344555555444432
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 036461 163 PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 242 (369)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (369)
.+..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++-.+++....++.-.|... +.|+
T Consensus 1103 -~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 -EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELI 1173 (1666)
T ss_pred -ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHH
Confidence 4556777888888888888877766442 356677888888888888888888877777665444433 4677
Q ss_pred HHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 036461 243 IGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (369)
-+|++.++..+.+.++ ..|+......+..-|...|.++.|.-+|... ..|..|...+...|++.
T Consensus 1174 ~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred HHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHH
Confidence 7777777766655543 2366666666666677777776666655432 23444445555555555
Q ss_pred HHHHHHHhcc------------------------cCCcccCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 323 IAWELFRSLP------------------------RGVLIADVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 323 ~a~~~~~~~~------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
.|...-+++. ..++.....-..-++..|...|-+++-+.+++.
T Consensus 1238 ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1238 GAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 5544433332 112222333445566666666777776666653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-06 Score=72.55 Aligned_cols=327 Identities=16% Similarity=0.088 Sum_probs=221.3
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-HHhHHHHHHHH
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN-VVTYNSLIHGF 105 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 105 (369)
.+.+..|+++.|+..|-..+..+ |+|...|..-..+|.+.|++++|++=-.+-.+. .|+ +.-|.....++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAAL 80 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHH
Confidence 45678899999999999999987 678999999999999999999998876666654 444 56789999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC---C--------------C-----------------------
Q 036461 106 CYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKN---G--------------K----------------------- 145 (369)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~--------------~----------------------- 145 (369)
.-.|++++|+.-|.+-++.. +.+...+..+..++... + +
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 99999999999999887753 22444444444443111 0 0
Q ss_pred --------hhHHHHHHHHHHH--------c-------CCCc----------------------cHHHHHHHHHHHHhcCC
Q 036461 146 --------MDEASRLLELMIQ--------I-------GVRP----------------------NAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 146 --------~~~a~~~~~~~~~--------~-------~~~~----------------------~~~~~~~l~~~~~~~~~ 180 (369)
.....+..-.+.. . +..| -..-...++++..+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 0000000000000 0 0011 01123456667777777
Q ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHH-------HHHHHHHhcccHHH
Q 036461 181 VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYN-------TLFIGLFEIHQVER 253 (369)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~ 253 (369)
+..|++.+....... .+..-++....+|...|.+..+...-....+.|.. ...-|+ .+..++.+.++++.
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 888888888777664 45555667777788888887777777766665432 222222 23345666778888
Q ss_pred HHHHHHHHHHcCCCcCHHH-------------------------HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036461 254 AFKLFDEMQRHGVAADTWA-------------------------YRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAY 308 (369)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 308 (369)
++..+.+.+.....|+... ...-...+.+.|++..|+..|.+++... |.|...|
T Consensus 317 ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lY 395 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLY 395 (539)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHH
Confidence 8888877665433333211 1112445677899999999999998877 7788899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 309 NCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 309 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
....-+|.+.|.+..|+.-.+..++.+ ++....|..=..++....+|++|++.|.+-.+
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998888877762 23445666666677778889999988887554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-07 Score=70.85 Aligned_cols=165 Identities=12% Similarity=0.051 Sum_probs=135.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 243 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (369)
|... ..+-..+...|+-+....+........ +.+.......+....+.|++..|...+++..... ++|..+|+.+..
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 667778888899888888888765443 5566677778889999999999999999998864 558899999999
Q ss_pred HHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 036461 244 GLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKI 323 (369)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 323 (369)
+|.+.|+++.|..-|.+..+.. +-++..++.+...+.-.|+++.|..++......+ +-|..+-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 9999999999999999988863 3356678888888999999999999999888764 4578888889999999999999
Q ss_pred HHHHHHhccc
Q 036461 324 AWELFRSLPR 333 (369)
Q Consensus 324 a~~~~~~~~~ 333 (369)
|..+..+-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9988766554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-07 Score=74.89 Aligned_cols=185 Identities=16% Similarity=0.047 Sum_probs=125.5
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCch---HHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcH--Hh
Q 036461 163 PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN---VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV--VI 237 (369)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 237 (369)
.....+..++..+...|++++|...++++.... +.+ ..++..+..++...|++++|...++++.+..+.... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 456677788888999999999999999987764 222 246677888899999999999999999886432121 13
Q ss_pred HHHHHHHHHhc--------ccHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036461 238 YNTLFIGLFEI--------HQVERAFKLFDEMQRHGVAADT-WAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAY 308 (369)
Q Consensus 238 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 308 (369)
+..+..++... |+++.|...++.+.+.. |+. .....+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 44555555544 67888888888887753 332 22221111100 000 00 0112
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcccCCc--ccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 309 NCLIDGLCKSGRLKIAWELFRSLPRGVL--IADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 309 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
..+...+.+.|++++|...++++.+... +.....+..+..++.+.|++++|..+++.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2456678889999999999998876522 12356788899999999999999998888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-07 Score=68.90 Aligned_cols=164 Identities=14% Similarity=0.068 Sum_probs=132.4
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 036461 129 NVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILIN 208 (369)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 208 (369)
|... ..+...+...|+-+....+........ +.+.......+....+.|++..|...+++..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 667777888888888888777755432 4466666778889999999999999999998876 888999999999
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHH
Q 036461 209 GYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE 288 (369)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 288 (369)
+|.+.|+.+.|..-|.+..+..+. ++..++.+...+.-.|+.+.|..++......+ .-|...-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 999999999999999999887433 66678888888888999999999999888764 3367777888888889999999
Q ss_pred HHHHHHHHH
Q 036461 289 AVELFRTLR 297 (369)
Q Consensus 289 a~~~~~~~~ 297 (369)
|..+...-.
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 988776544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.3e-07 Score=68.10 Aligned_cols=118 Identities=13% Similarity=0.152 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH-HhcCC--hHHHH
Q 036461 109 NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF-CLTGR--VNRAE 185 (369)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~ 185 (369)
++.+++...+++..... +.+...|..+...|...|++++|...|+...+.. +.+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 33344444444444332 2244444444444444444444444444444443 22333444444332 33333 24444
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 186 ELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
+++++..+.+ +.+..++..+...+...|++++|+..|+++.+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4444444443 333444444444444444444444444444443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.9e-06 Score=75.12 Aligned_cols=264 Identities=12% Similarity=0.141 Sum_probs=180.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNE 139 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (369)
+..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.|++-.+++...++..-.|... ..++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 567888888888888888888776432 267778888888888888888888888777766565554 467778
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHH
Q 036461 140 LCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGA 219 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (369)
|++.++..+..+++. -|+......+.+-|...|.++.|.-++.. +..|..+...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 888888777655442 36777777788888888888888777654 34477777888888888888
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 220 LSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
.+.-++.. +..||..+..+|...+.+.-|. |-..++.....-+..++..|...|-+++.+.+++.....
T Consensus 1240 VD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1240 VDAARKAN------STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHhhhcc------chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 77655432 5678888888887766655442 333334456667788899999999999999999877644
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC-Ccc------cCHHHHHHHHHHHHhcCchHHHH
Q 036461 300 KYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG-VLI------ADVVTYNIMIHALCADGKMDKAR 360 (369)
Q Consensus 300 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~A~ 360 (369)
. +.....|..|.-.|.+- ++++..+.++-.-.. +++ -....|+-+...|.+-..|+.|.
T Consensus 1309 E-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1309 E-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred h-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3 33455677777666654 334433333322111 111 12446777777777766666654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.4e-08 Score=72.14 Aligned_cols=128 Identities=10% Similarity=0.116 Sum_probs=101.9
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHH-HHhcC
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHG-FCYAN 109 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 109 (369)
..++.++++..++...+.+ |.|...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|
T Consensus 51 ~~~~~~~~i~~l~~~L~~~-------P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g 122 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRAN-------PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAG 122 (198)
T ss_pred CchhHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC
Confidence 3677788888888888876 6788899999999999999999999999988864 4477788888776 46667
Q ss_pred C--HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHH
Q 036461 110 D--WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVY 168 (369)
Q Consensus 110 ~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (369)
+ .++|..++++..+.+.. +..++..+...+...|++++|...|+.+.+.. +|+..-+
T Consensus 123 ~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 123 QHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred CCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 6 58999999999887533 67788888888899999999999999988875 3444333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.3e-08 Score=68.27 Aligned_cols=95 Identities=6% Similarity=-0.156 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHH
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL 101 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (369)
+..+...+...|++++|...|+.+...+ |.+...|..+..++...|++++|+..|+...... +.+...+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~l 98 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-------PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 4445555666666666666666666554 4455666666666666666666666666666542 3355556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 036461 102 IHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..++...|++++|...|+..+..
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666666554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.7e-06 Score=73.06 Aligned_cols=163 Identities=13% Similarity=0.048 Sum_probs=104.0
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcc---cccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV---CKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN 94 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (369)
+..+|..+.+.|.+..+.+-|.-.+-.|....+..... -.|+ ..-..........|.+++|+.+|++-++.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 56789999999999888887766655554322100000 0111 23333444456778999999999887763
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH----------cC----
Q 036461 95 VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQ----------IG---- 160 (369)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~---- 160 (369)
..|=..|-..|.|++|.++-+.--.. . =..||.....-+-..++.+.|++.|++... ..
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 33445667789999999887643221 1 234666667777777888888887765321 11
Q ss_pred -----CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036461 161 -----VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMES 193 (369)
Q Consensus 161 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (369)
-..|...|......+...|+.+.|+.++.....
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 123556677777777788888888888877654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-07 Score=66.10 Aligned_cols=95 Identities=12% Similarity=-0.061 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 036461 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCK 317 (369)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (369)
+..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...|+++.... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555566666666666666666553 3355566666666666666666666666666554 4556666666666666
Q ss_pred CCCHHHHHHHHHhcccC
Q 036461 318 SGRLKIAWELFRSLPRG 334 (369)
Q Consensus 318 ~g~~~~a~~~~~~~~~~ 334 (369)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-06 Score=78.09 Aligned_cols=235 Identities=11% Similarity=0.093 Sum_probs=162.1
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 036461 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI 136 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (369)
+.+...+..|+..+...+++++|.++.+...+. .|-....|..+...+.+.++..++..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE-HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 456788999999999999999999999977765 222444555555577777775555444 23
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCh
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (369)
+.......++..+..++..+...+ -+...+..+..+|-+.|+.++|..+++++.+.. +.++.+.+.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 333334444544444555555543 355578889999999999999999999999987 77899999999999999 99
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHHHHH-----HhcccHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhCCCHHHHH
Q 036461 217 EGALSLYSEMLSKGIKPDVVIYNTLFIGL-----FEIHQVERAFKLFDEMQRH-GVAADTWAYRTFIDGLCKNGYIVEAV 290 (369)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 290 (369)
++|..++.+.+..-+ +..-|+.+...+ ....+.+.-..+.+.+... +..--..++..+-..|-..++++++.
T Consensus 166 ~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 166 EKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred HHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999887521 111222222211 1223344444455554433 22333455666677888888999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036461 291 ELFRTLRILKYELDIRAYNCLIDGLC 316 (369)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (369)
.+++.+.+.. +.|......++.+|.
T Consensus 244 ~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 9999999876 557777778887776
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.7e-06 Score=63.74 Aligned_cols=258 Identities=12% Similarity=0.035 Sum_probs=172.6
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 036461 58 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIM 137 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (369)
|+...|+ ++-+.-.|++..++..-....... .+...-..+.++|...|++.....- +... -.|....+..+.
T Consensus 8 ~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a 79 (299)
T KOG3081|consen 8 PEDELFN--IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLA 79 (299)
T ss_pred cchhHHH--HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHH
Confidence 3334444 445556788988887666554432 3444444566778778876544433 2222 234444555555
Q ss_pred HHHHhCCChhHHH-HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCh
Q 036461 138 NELCKNGKMDEAS-RLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (369)
Q Consensus 138 ~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (369)
......++.+..+ .+.+.+.......+......-...|...|++++|.+...... +......=+..+.+..+.
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~ 153 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRF 153 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHH
Confidence 5444455544443 444555554444444444455567889999999999887632 333444445667778889
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHH
Q 036461 217 EGALSLYSEMLSKGIKPDVVIYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVEL 292 (369)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (369)
+-|...+++|.+- .+..|.+.|..++.+ .+....|.-+|+++-+. .+|++.+.+....++...|++++|..+
T Consensus 154 d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 154 DLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 9999999999884 266777777777764 35688999999999875 468888999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH-HHHHHHhcccC
Q 036461 293 FRTLRILKYELDIRAYNCLIDGLCKSGRLKI-AWELFRSLPRG 334 (369)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 334 (369)
++.+.... ..++.++..++.+-...|...+ ..+.+.++...
T Consensus 230 L~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 230 LEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 99999876 5577888777777777776544 45666666654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.6e-06 Score=63.22 Aligned_cols=137 Identities=19% Similarity=0.206 Sum_probs=62.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh----
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK---- 212 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 212 (369)
+..|...|++++|++...... +......=...+.+..+++-|.+.+++|.+. .+..+.+.+.+++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 334555555555555544311 1222222233444555555555555555543 233334434333332
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC
Q 036461 213 NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG 284 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (369)
.+.+..|.-+|+++.++ .+|+..+.+....++...+++++|..+++..+.... .++.++..++.+-...|
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLG 255 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhC
Confidence 23455555555555543 344555555555555555555555555555554432 23444443333333333
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-06 Score=75.86 Aligned_cols=164 Identities=11% Similarity=0.055 Sum_probs=110.7
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCC-CCCCHHh
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN-INPNVVT 97 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 97 (369)
..+|..|...|+...+...|.+.|+++-+.+ +.+...+......|+...+++.|..+.-..-+.. ...-...
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-------atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n 564 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-------ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN 564 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh
Confidence 3478888888888888888888888888876 5677888888888888888888888743332221 0001122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccH-HHHHHHHHHHH
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNA-FVYNTLMDGFC 176 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 176 (369)
|....-.|...++...|...|+......+ -|...|..++.+|.+.|++..|.++|.++.... |+. ..-....-..+
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMEC 641 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHH
Confidence 33455566677788888888887776643 367778888888888888888888888777653 322 11112223345
Q ss_pred hcCChHHHHHHHHHHH
Q 036461 177 LTGRVNRAEELFVSME 192 (369)
Q Consensus 177 ~~~~~~~a~~~~~~~~ 192 (369)
..|.+.+|...+..+.
T Consensus 642 d~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLII 657 (1238)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 5677777777766654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-09 Score=53.89 Aligned_cols=33 Identities=42% Similarity=0.709 Sum_probs=25.5
Q ss_pred CcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 335 VLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 335 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
|+.||..+|++++.+|++.|+.++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777888888888888888888888877773
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.6e-06 Score=75.15 Aligned_cols=147 Identities=14% Similarity=0.057 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
+|.+.|++..+.+ ..+..++......+++..+++.|..+.-...+..+ ...-...|....-.|...++...|..
T Consensus 510 RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~-----a~~~k~nW~~rG~yyLea~n~h~aV~ 583 (1238)
T KOG1127|consen 510 RAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP-----AFACKENWVQRGPYYLEAHNLHGAVC 583 (1238)
T ss_pred HHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch-----HHHHHhhhhhccccccCccchhhHHH
Confidence 5788888888876 56788999999999999999999998555444331 01112334456667778889999999
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH--HHHHHhCCChhHHHHHHHHHHH
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI--MNELCKNGKMDEASRLLELMIQ 158 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~ 158 (369)
-|+...+.. |-|...|..++.+|...|++..|.++|.+.... .|+. .|... ....+..|.+.++...+.....
T Consensus 584 ~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 584 EFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999988764 347889999999999999999999999988765 3332 33322 2334567888888888877654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.7e-09 Score=53.93 Aligned_cols=34 Identities=56% Similarity=1.058 Sum_probs=32.0
Q ss_pred cCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036461 13 FGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMA 46 (369)
Q Consensus 13 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 46 (369)
.|++||..+|+.+|.++++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999873
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-07 Score=65.84 Aligned_cols=110 Identities=12% Similarity=0.012 Sum_probs=75.8
Q ss_pred HHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHH
Q 036461 6 LFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLK 85 (369)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (369)
.|+...+.. |.+......+...+.+.|++++|...|+.+...+ +.+...+..+..++...|++++|...++.
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-------PYNSRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555543 3344556666677777777777777777777655 45667777777777777777777777777
Q ss_pred hHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 86 MKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
....+ +.+...+..+..++...|++++|...|+...+.
T Consensus 77 ~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 77 AAALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 76653 445666666777777777777777777777665
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.6e-07 Score=78.99 Aligned_cols=144 Identities=8% Similarity=0.040 Sum_probs=121.1
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 036461 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI 136 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (369)
+.++..+..|..+..+.|.+++|..+++.+.+. .|.+......++..+.+.+++++|...+++.....+ -+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 566889999999999999999999999999986 344667788899999999999999999999998753 367778888
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHH
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYS 204 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 204 (369)
..++...|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+.. .+....|+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~ 226 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLT 226 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHH
Confidence 889999999999999999999843 4468889999999999999999999999997664 33334433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=7e-06 Score=73.64 Aligned_cols=215 Identities=10% Similarity=0.007 Sum_probs=140.3
Q ss_pred hhhHHHHHHHHHhcCChHHHH-HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAK-ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
+.....+=.+...-|..++|- ++..++.+ ++..........+++.-+...... ...+...+..|..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~ 94 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVAR 94 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHH
Confidence 344444444555556655553 33333221 233333333333333333333332 3446778888888
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (369)
...+.|.+++|..+++.+.+.. +-+......+...+.+.+++++|...+++..... +.+......+..++.+.|++++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHH
Confidence 8888888888888888888874 3356677778888888888888888888888775 5666777788888888888888
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036461 219 ALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (369)
|..+|+++...+. -+..++..+..++...|+.++|...|+...+.. .+....|+.++ +++..-..+++++.
T Consensus 173 A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~ 243 (694)
T PRK15179 173 ADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcC
Confidence 8888888887432 246778888888888888888888888887652 23444444333 23344445555554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.3e-06 Score=61.16 Aligned_cols=189 Identities=14% Similarity=0.072 Sum_probs=126.4
Q ss_pred cCCHHHHHHHHHHHHhc---C-CCCChh-hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChH
Q 036461 108 ANDWNEAKCLFIEMMDQ---G-VQPNVV-SFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182 (369)
Q Consensus 108 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (369)
..+.++..+++..++.. | ..++.. .|..++-+....|+.+.|..+++.+.+.- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 45778888887777542 3 334443 34455666677788888888888877652 333333333333455678888
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHH
Q 036461 183 RAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQ 262 (369)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (369)
+|+++++.+.+.+ |.|..++-.-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888888776 556666666666666677777888777777776 45588888888888888888888888888877
Q ss_pred HcCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcC
Q 036461 263 RHGVAADTWAYRTFIDGLCKNG---YIVEAVELFRTLRILK 300 (369)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 300 (369)
-.. |.++..+..+...+.-.| +.+.+...|.+..+..
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 653 334555555555544433 5667777888777653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.9e-06 Score=71.40 Aligned_cols=315 Identities=16% Similarity=0.063 Sum_probs=179.3
Q ss_pred CHhHHHHHHH--HHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-C----
Q 036461 18 NVFTYNTLIN--GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-N---- 90 (369)
Q Consensus 18 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~---- 90 (369)
|..+-..++. .|...|+.+.|.+-.+.+.. ...|..+...|.+..+.+-|.-.+-.|... |
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAl 792 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARAL 792 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHH
Confidence 5555555553 46677999998887776543 468999999999988888777766665432 1
Q ss_pred ----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHH
Q 036461 91 ----INPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAF 166 (369)
Q Consensus 91 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (369)
-.|+ .+=..........|.+++|..+|++... |..+=..|...|.+++|.++-+.-.+... ..
T Consensus 793 R~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~ 859 (1416)
T KOG3617|consen 793 RRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RN 859 (1416)
T ss_pred HHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hh
Confidence 1111 2222334445678999999999998764 33455667788999999988775444322 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc----------C---------CCchHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 036461 167 VYNTLMDGFCLTGRVNRAEELFVSMESM----------G---------CKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (369)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (369)
||.....-+...++.+.|++.|++...+ . -..|...|......+-..|+.+.|+.+|....
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 5666667777788899998888764211 1 01244556666666677888888888888765
Q ss_pred hC----------C----------CCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC--CC--cCHHHHHHHHHHHHhC
Q 036461 228 SK----------G----------IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG--VA--ADTWAYRTFIDGLCKN 283 (369)
Q Consensus 228 ~~----------~----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~ 283 (369)
.. | -.-|......|.+.|-..|++.+|...|.+..... +. .....-..+...+...
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 42 0 01133344455666666666666666665543210 00 0000000111111111
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHh--------ccc--CCcccCHHHHHHHHHHHH
Q 036461 284 --GYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRS--------LPR--GVLIADVVTYNIMIHALC 351 (369)
Q Consensus 284 --g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~ 351 (369)
.+.-.|-++|++.- ..+...+..|-+.|.+.+|+++--+ ++. .....|+...+.-...+.
T Consensus 1020 ~~~d~v~aArYyEe~g--------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELG--------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE 1091 (1416)
T ss_pred CchhHHHHHHHHHHcc--------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 11222222332211 0112233445566666666554211 111 122346777777777788
Q ss_pred hcCchHHHHHHHHH
Q 036461 352 ADGKMDKARDLFLD 365 (369)
Q Consensus 352 ~~g~~~~A~~~~~~ 365 (369)
...++++|..++-.
T Consensus 1092 ~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCL 1105 (1416)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888777654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.7e-05 Score=63.30 Aligned_cols=115 Identities=14% Similarity=0.188 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHH
Q 036461 251 VERAFKLFDEMQRH-GVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYEL-DIRAYNCLIDGLCKSGRLKIAWELF 328 (369)
Q Consensus 251 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 328 (369)
.+.....++++... ...| .-+|..++..-.+..-+..|..+|.++.+.+..+ ++.+.++++.-+| +++...|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 44445555555442 2223 3356677777778888999999999999876666 6777788888777 58899999999
Q ss_pred HhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 329 RSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
+--.+. ...++..-...+..+.+.|+-..|+.+|++...
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 986664 233555556777888888988888888888754
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.5e-06 Score=70.45 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=61.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccH
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQV 251 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (369)
+.+......|.+|+.+++.+.... ....-|..+...|...|+++.|.++|.+.- .++-.+..|.+.|.+
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 444555666777777777666542 233345666667777777777777665432 133445566777777
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 252 ERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
+.|.++-.+... .......|..-..-+-+.|++.+|.++|
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 777666554432 2223334444444455556555555554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.9e-05 Score=57.43 Aligned_cols=193 Identities=13% Similarity=0.098 Sum_probs=126.2
Q ss_pred cCChhHHHHHHHHHHcCCCCCCcccccch-hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 036461 32 TGHTIVALNLFEEMANGNGEFGVVCKPNT-VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 32 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (369)
..+.++.++++..+....+.. . ..++. ..+..++-+....|+.+.|...++.+.+. .|-+..+-..-...+-..|+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~-~-~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSG-A-LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhc-c-cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhc
Confidence 356677777777666543211 0 12333 23455666667778888888888887765 33333333333334455688
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036461 111 WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVS 190 (369)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (369)
+++|+++++.+++.+ +.|..++..-+...-..|+..+|++-+....+. +..|...|.-+...|...|++++|.-++++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 888888888888775 346666666666666777777887777777765 456788888888888888888888888888
Q ss_pred HHhcCCCchHHHHHHHHHHHhhc---CChHHHHHHHHHHHhCC
Q 036461 191 MESMGCKHNVFSYSILINGYCKN---KEIEGALSLYSEMLSKG 230 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 230 (369)
+.-.. |.++..+..+...+.-. .+.+.+.++|.+.++..
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 87654 45555555565555433 35666777777777753
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-06 Score=61.28 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=71.1
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 036461 58 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIM 137 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (369)
.+......+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|...+++....+ +.+...+..+.
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 345556667777777788888888887776653 3466777777777777778888887777776653 33556666677
Q ss_pred HHHHhCCChhHHHHHHHHHHHcC
Q 036461 138 NELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
.++...|++++|...++...+..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc
Confidence 77777777777777777777653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-05 Score=65.16 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=113.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc
Q 036461 171 LMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ 250 (369)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (369)
....+...|+++.|+..++.+.... |.|+..+......+.+.++..+|.+.++++....+. .....-.+..++.+.|+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~ 389 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCC
Confidence 3445667889999999999988764 566777777888899999999999999999987332 25566678888999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 036461 251 VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRS 330 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 330 (369)
+.+|+.++++..... +.|+..|..+.++|...|+..++.....+ .+...|+++.|...+..
T Consensus 390 ~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 390 PQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMR 450 (484)
T ss_pred hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHH
Confidence 999999999888764 56888999999999999988887765544 34557888888888877
Q ss_pred cccC
Q 036461 331 LPRG 334 (369)
Q Consensus 331 ~~~~ 334 (369)
..+.
T Consensus 451 A~~~ 454 (484)
T COG4783 451 ASQQ 454 (484)
T ss_pred HHHh
Confidence 7664
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.4e-05 Score=61.91 Aligned_cols=123 Identities=16% Similarity=0.101 Sum_probs=73.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCh
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (369)
...+...|+++.|+..++.++... +-|+.........+.+.|+.++|.+.++++.... +......-.+..++.+.|++
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCCh
Confidence 334455666666666666666542 3355555555666666666666666666666553 22244455566666666666
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHH
Q 036461 217 EGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQ 262 (369)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (369)
.+|+.+++....... .|+..|..|.++|...|+..++.....+..
T Consensus 391 ~eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 391 QEAIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 666666666665532 366666666666666666666665555444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.4e-06 Score=59.96 Aligned_cols=126 Identities=14% Similarity=0.136 Sum_probs=84.1
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHH
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAAD---TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELD--IRAYNCL 311 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l 311 (369)
.|..++..+ ..++...+...++.+.+... .+ ......+...+...|++++|...|+.+......++ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 36777777777777776532 22 22334455677788888888888888887642222 2244556
Q ss_pred HHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 312 IDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 312 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
...+...|++++|+..++..... ...+..+.....++.+.|++++|+..|++-
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77788888888888888775443 234556777888888888888888888753
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.9e-05 Score=66.24 Aligned_cols=301 Identities=18% Similarity=0.125 Sum_probs=163.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHH
Q 036461 23 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLI 102 (369)
Q Consensus 23 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (369)
...|..|....+|++|+.+-+.. + .|.-...-...++.+...|+-++|-++- .+ +-.. ..-+
T Consensus 561 e~aigmy~~lhkwde~i~lae~~---~------~p~~eklk~sy~q~l~dt~qd~ka~elk----~s----dgd~-laai 622 (1636)
T KOG3616|consen 561 EEAIGMYQELHKWDEAIALAEAK---G------HPALEKLKRSYLQALMDTGQDEKAAELK----ES----DGDG-LAAI 622 (1636)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhc---C------ChHHHHHHHHHHHHHHhcCchhhhhhhc----cc----cCcc-HHHH
Confidence 44566777778888888775532 2 1222333444555666666666665431 11 1111 2345
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-------------CCChhHHHHHHHHHHH---------cC
Q 036461 103 HGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK-------------NGKMDEASRLLELMIQ---------IG 160 (369)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~---------~~ 160 (369)
+.|.+.|.+..|.+....-.. +..|......+..++.+ ..++++|.+.|+.--. ..
T Consensus 623 qlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfa 700 (1636)
T KOG3616|consen 623 QLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA 700 (1636)
T ss_pred HHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh
Confidence 666777766666554321111 11233333333333333 3333333333322110 01
Q ss_pred CCccHHHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHH
Q 036461 161 VRPNAFVY-NTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYN 239 (369)
Q Consensus 161 ~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (369)
.+..+.+. .....-+...|+++.|+..|-+.. .....+.+......+.+|+.+++.+...+. -..-|.
T Consensus 701 fp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~ 769 (1636)
T KOG3616|consen 701 FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYG 769 (1636)
T ss_pred CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccch
Confidence 11111111 122334445556666655543322 123345666778899999999998887643 344577
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 036461 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSG 319 (369)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (369)
.+...|...|+++.|.++|-+. ..++..+..|.+.|+|+.|.++-.+.. +.......|-.-..-+-++|
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhc
Confidence 8889999999999999998543 245667888999999999999887665 22334445555445555666
Q ss_pred CHHHHHHHHHhccc----------CC-----------cccC--HHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 320 RLKIAWELFRSLPR----------GV-----------LIAD--VVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 320 ~~~~a~~~~~~~~~----------~~-----------~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
++.+|.++|-.+.. .| ..|+ ..|...+..-+...|+.+.|.+.|-+
T Consensus 839 kf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 839 KFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred chhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 66555554432211 00 1112 23445556666677777777766544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.5e-06 Score=70.73 Aligned_cols=125 Identities=14% Similarity=0.157 Sum_probs=79.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 036461 203 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK 282 (369)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (369)
...++..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++.+.++.. +.+...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445555555667777777777777653 33 33345666666666667777777666542 3355566666666677
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 283 NGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 283 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
.++++.|+.+.+++.... |.+..+|..|+.+|...|+++.|+..+..+.-
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 777777777777777654 44555777777777777777777777766654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.5e-06 Score=59.10 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC--HHhH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN--VVTY 98 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 98 (369)
.|..++..+ ..++...+...++.+....+. .+........+...+...|++++|...|+.+......|+ ....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~----s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPS----SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 344444444 356666666666666655410 001123333445555666666666666666665431111 1223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHH
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLEL 155 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 155 (369)
..+...+...|++++|+..++..... ......+.....++...|+.++|...|+.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34555566666666666666543222 22333444555566666666666666554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.3e-06 Score=67.43 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 036461 166 FVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGL 245 (369)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (369)
.....++..+...++++.|+.+++++.+.. |+ ....++..+...++..+|.+++++.+.... -+...+......+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 344566777778899999999999999874 44 445578888888999999999999997643 3667777778889
Q ss_pred HhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036461 246 FEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
.+.++++.|..+.+++.+.. +-+..+|..|..+|...|+++.|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999999863 44667999999999999999999998887654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=56.10 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHH
Q 036461 283 NGYIVEAVELFRTLRILKYE-LDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361 (369)
Q Consensus 283 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 361 (369)
.|+++.|+.+++++...... ++...+..++.+|.+.|++++|..++++ .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57888899999888876421 2455666688889999999999999988 33221 233455566888899999999998
Q ss_pred HHHH
Q 036461 362 LFLD 365 (369)
Q Consensus 362 ~~~~ 365 (369)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.6e-06 Score=53.68 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
++..+...+...|++++|+..++.+.+.. +.+...+..+..++...+++++|.+.++...... +.+..++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHH
Confidence 35556667777788888888888777654 3344667777777777777888888777776653 334456667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
+...+...|+++.|...+......
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcc
Confidence 777777777777777777776543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0015 Score=58.52 Aligned_cols=225 Identities=12% Similarity=0.080 Sum_probs=144.1
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhH-HHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY-TTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY 107 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (369)
....+++..|+.-..++.+.. ||.... ..-.-.+.+.|+.++|..+++.....+.. |..+...+-.+|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--------Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--------PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRD 89 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHH
Confidence 345678889999999888865 443222 22233456789999999888877665444 78888888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-------
Q 036461 108 ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGR------- 180 (369)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 180 (369)
.++.++|..+|++.... -|+......+..+|.+.+++.+-.+.--++.+. .+.+...+=.++......-.
T Consensus 90 ~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCccccc
Confidence 99999999999998875 466777777888888888877666555555543 23334333334443333211
Q ss_pred ---hHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhhcCChHHHHHHH-HHHHhCCCCCcHHhHHHHHHHHHhcccHHHHH
Q 036461 181 ---VNRAEELFVSMESMGCKH-NVFSYSILINGYCKNKEIEGALSLY-SEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF 255 (369)
Q Consensus 181 ---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (369)
..-|.+.++.+...+.+. +..-.......+...|++++|++++ ....+.-..-+...-+.-+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 234555666665543111 1111222233455678888888888 33444333334444455666777788888888
Q ss_pred HHHHHHHHcC
Q 036461 256 KLFDEMQRHG 265 (369)
Q Consensus 256 ~~~~~~~~~~ 265 (369)
++..++...+
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 8888888765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-05 Score=56.64 Aligned_cols=95 Identities=12% Similarity=-0.022 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELC 141 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (369)
....+...+...|++++|..+|+-+.... +-+..-|..|..++-..|++++|+..|.......+ -++..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 33344444444445555555444444331 11333444444444444455555555444444432 23444444444444
Q ss_pred hCCChhHHHHHHHHHHH
Q 036461 142 KNGKMDEASRLLELMIQ 158 (369)
Q Consensus 142 ~~~~~~~a~~~~~~~~~ 158 (369)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44555555444444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.6e-05 Score=56.13 Aligned_cols=98 Identities=12% Similarity=-0.002 Sum_probs=79.7
Q ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036461 235 VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDG 314 (369)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (369)
....-.+...+...|++++|.++|+.+...+ +.+..-|..+..++-..|++++|+..|......+ +.++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3444455666778899999999999888764 3466777888888889999999999999998887 6788888888999
Q ss_pred HHcCCCHHHHHHHHHhcccC
Q 036461 315 LCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 315 ~~~~g~~~~a~~~~~~~~~~ 334 (369)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999887764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.4e-05 Score=53.33 Aligned_cols=101 Identities=12% Similarity=0.052 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCC--CCCHHh
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI--NPNVVT 97 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 97 (369)
.++..+...+.+.|++++|...|+.+....+. .+.....+..+..++.+.|+++.|...|+.+..... +.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK----STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 34566667777777777777777777765410 011134566677777777777777777777765321 112445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
+..+..++.+.|++++|...++++...
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 666666777777777777777777665
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.4e-05 Score=52.57 Aligned_cols=90 Identities=19% Similarity=0.192 Sum_probs=40.3
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGR 320 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (369)
+...+...|++++|...+..+.+.. +.+...+..+...+...|++++|...++...... +.+..++..++..+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3444444555555555555544432 1222334444444444455555555554444432 2233344444444444444
Q ss_pred HHHHHHHHHhcc
Q 036461 321 LKIAWELFRSLP 332 (369)
Q Consensus 321 ~~~a~~~~~~~~ 332 (369)
++.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0015 Score=53.32 Aligned_cols=265 Identities=14% Similarity=0.004 Sum_probs=156.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIH 103 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (369)
.....+.+..++..|+..+..+.+.. +.+...|..-+..+...+++++|+--.+.-.+... -....+...-+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~ 125 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQ 125 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhheecCC-Cccccccchhh
Confidence 33445666677778888888777765 44566666666666667777776665554433210 01112222223
Q ss_pred HHHhcCCHHHHHHHH---------------HHHHhcC-CCCChhhHHHH-HHHHHhCCChhHHHHHHHHHHHcCCCccHH
Q 036461 104 GFCYANDWNEAKCLF---------------IEMMDQG-VQPNVVSFNVI-MNELCKNGKMDEASRLLELMIQIGVRPNAF 166 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~---------------~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (369)
++...++..+|...+ +...... -+|...++..+ ..++...|+.++|...--..++.. ..+..
T Consensus 126 c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~ 204 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAE 204 (486)
T ss_pred hhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhH
Confidence 333333333333222 2222111 12333344333 345667788888888887777764 22333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHH-------------HHHHHHHHhhcCChHHHHHHHHHHHhC---C
Q 036461 167 VYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFS-------------YSILINGYCKNKEIEGALSLYSEMLSK---G 230 (369)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 230 (369)
....-..++...++.+.+...|.+....+ |+-.. +..-..-..+.|.+..|.+.|.+.+.. +
T Consensus 205 al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 205 ALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred HHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 33333345556778888888888887664 33221 222233456788999999999998875 3
Q ss_pred CCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 231 IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
..|+...|.....+..+.|+..+|+.-.+...+.+. .-...+..-..++...++|++|.+-++...+..
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566677777788889999999988888776421 112233344456777889999999998887654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.25 E-value=3e-05 Score=64.79 Aligned_cols=122 Identities=10% Similarity=0.114 Sum_probs=73.6
Q ss_pred CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC--CCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHH
Q 036461 197 KHNVFSYSILINGYCKNKEIEGALSLYSEMLSK--GIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYR 274 (369)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (369)
+.+......++..+....+.+.+..++.+.... ....-..|..++++.|...|..+.++.++..=...|+=||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555566666666666666666666666654 121223344566666667776777777666666666666777777
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 036461 275 TFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKS 318 (369)
Q Consensus 275 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (369)
.++..+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777776666666555445555554444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0001 Score=50.91 Aligned_cols=26 Identities=12% Similarity=-0.077 Sum_probs=11.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036461 273 YRTFIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
+..+..++...|+.++|...++++..
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 33333444444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00022 Score=57.62 Aligned_cols=164 Identities=15% Similarity=0.125 Sum_probs=74.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHh----cCCCch--H
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQI----GVRP-NAFVYNTLMDGFCLTGRVNRAEELFVSMES----MGCKHN--V 200 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~ 200 (369)
.|......|...+++++|...|....+. +-+. -...|.....+|.+ .++++|...+++... .| .++ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G-~~~~aA 114 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG-RFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence 4555566666677777777777665432 1111 12233333333333 366666666665532 22 222 2
Q ss_pred HHHHHHHHHHhhc-CChHHHHHHHHHHHhC----CCCCc--HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCC-----c
Q 036461 201 FSYSILINGYCKN-KEIEGALSLYSEMLSK----GIKPD--VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVA-----A 268 (369)
Q Consensus 201 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~ 268 (369)
..+..+...|... |++++|+..|++..+. + .+. ...+..+...+.+.|++++|..+|+++...... .
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 2344555555555 5666666666655442 1 111 123344455555566666666666555443211 1
Q ss_pred CHH-HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036461 269 DTW-AYRTFIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 269 ~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
+.. .+...+-++...||...|...+++...
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111 122223344445556666665555543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.7e-05 Score=64.29 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=59.2
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
+.+......++..+....+.+.+..++-+....... ...-+.+..++++.|.+.|..+.++.++..=...|+-||.
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~----~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNC----SYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccc----ccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 344444444455544445555555555554443210 0111233445555555555555555555555555555555
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK 142 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (369)
.+++.|+..+.+.|++..|.++...|..++...+..|+...+.+|.+
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555555555555444444444444444443333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.9e-06 Score=43.93 Aligned_cols=32 Identities=47% Similarity=0.897 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPN 129 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (369)
|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0034 Score=56.36 Aligned_cols=100 Identities=20% Similarity=0.259 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHH--HHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLIN--GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKA 79 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 79 (369)
+|++-..++.+. .|+... ..++. .+.+.|+.++|..+++...... +.|..+...+-.+|...++.++|
T Consensus 27 kal~~~~kllkk--~Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-------~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 27 KALAKLGKLLKK--HPNALY-AKVLKALSLFRLGKGDEALKLLEALYGLK-------GTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHHHHHHHHHH--CCCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCC-------CCchHHHHHHHHHHHHHhhhhHH
Confidence 456666666654 344432 22333 3457788888887777666554 33667777777777778888888
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 036461 80 KELFLKMKDENINPNVVTYNSLIHGFCYANDWNE 113 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (369)
..+|+..... -|+......+..+|.+.+++.+
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 8888877664 3455555556666666655544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.22 E-value=6e-05 Score=60.55 Aligned_cols=131 Identities=11% Similarity=0.125 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh-cCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK-EGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
.+|..+++...+.+..+.|..+|.++.+.. ..+..+|...+..-.. .++.+.|..+|+...+. .+.+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHH
Confidence 467777777777777888888888877543 3344555555544333 45666678888777665 45567777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV---VSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
...+..+...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+..+.+++.+.
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777777777654 22222 25666666666666666666666666554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00013 Score=58.74 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh-cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 036461 201 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE-IHQVERAFKLFDEMQRHGVAADTWAYRTFIDG 279 (369)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (369)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...+..-.. .++.+.|..+|+...+. .+.+...+...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666777777777777777776432 2233444444443222 45566677777776665 44566666677777
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 280 LCKNGYIVEAVELFRTLRILKYELDI---RAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
+...|+.+.|..+|++.... ++++. ..|...+..=.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777644 22222 36666666666777777777777666653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.9e-06 Score=43.90 Aligned_cols=34 Identities=56% Similarity=0.966 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.2e-06 Score=53.65 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 036461 249 HQVERAFKLFDEMQRHGVA-ADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 327 (369)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. .+.+ +.+......++.++.+.|++++|+..
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4455555555555543221 1222333345555555555555555554 2111 11223333344555555555555555
Q ss_pred HH
Q 036461 328 FR 329 (369)
Q Consensus 328 ~~ 329 (369)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.4e-06 Score=43.30 Aligned_cols=32 Identities=34% Similarity=0.605 Sum_probs=16.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINP 93 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 93 (369)
+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555544443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.7e-05 Score=62.18 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=79.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIH 103 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (369)
.-...+...|+++.|++.|+++.+.+ +.+...|..+..++...|++++|+..++++.... +.+...|..+..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~ 78 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-------PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGT 78 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34566778899999999999999876 5667888889999999999999999999998863 346778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q 036461 104 GFCYANDWNEAKCLFIEMMDQG 125 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~ 125 (369)
+|...|++++|...|++.+...
T Consensus 79 ~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 79 ACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999988763
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00064 Score=54.94 Aligned_cols=166 Identities=19% Similarity=0.223 Sum_probs=89.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCcc--
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQ----GVQP-NVVSFNVIMNELCKNGKMDEASRLLELMIQI----GVRPN-- 164 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-- 164 (369)
..|......|...+++++|...|.+.... +-+. -...|.....+|.+. ++++|...++...+. | .++
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~a 113 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence 45666666777777777777777766332 1111 112333444444333 777777777666542 3 222
Q ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHHHHhc----CCCc--hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-----
Q 036461 165 AFVYNTLMDGFCLT-GRVNRAEELFVSMESM----GCKH--NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK----- 232 (369)
Q Consensus 165 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 232 (369)
...+..+...|... |++++|++.|.+.... + .+ -..++..+...+.+.|++++|..+|+++......
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 33555666667666 7777777777776432 2 11 1234556666777777777777777777664221
Q ss_pred CcHH-hHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 233 PDVV-IYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 233 ~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
.+.. .+...+.++...||+..|...+++....
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1111 2223344555667777777777776643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0016 Score=51.08 Aligned_cols=63 Identities=10% Similarity=0.015 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH---HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY---NSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..+-.....+...|++++|.+.|+++.... |-+.... -.++.++.+.+++++|...+++.++.
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334344555556677777777777776642 2122222 34556666777777777777777665
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0015 Score=51.21 Aligned_cols=183 Identities=13% Similarity=0.028 Sum_probs=100.8
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchh---hHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV---TYTTIIDGLCKEGFVDKAKELFLKMKDENINPN 94 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (369)
++..+......+.+.|++++|+..|+.+....+ -+.. ....++.++.+.++++.|...+++..+....-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-------~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 444455566777889999999999999999762 2222 335678889999999999999999987522211
Q ss_pred HHhHHHHHHHHHh--cC---------------C---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHH
Q 036461 95 VVTYNSLIHGFCY--AN---------------D---WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLE 154 (369)
Q Consensus 95 ~~~~~~l~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 154 (369)
...+...+.+.+. .+ + ..+|+..|+++++. -|+. .-..+|...+.
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~ 168 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLV 168 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHH
Confidence 2222222322221 11 1 12344444444443 1222 11223333222
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 155 LMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG--CKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
.+... -...-..+...|.+.|.+..|..-++.+.+.- .+........+..+|...|..++|..+...+
T Consensus 169 ~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 169 FLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 22211 00111134555666777777766666665541 1223444555666666666666666655544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.9e-06 Score=43.07 Aligned_cols=33 Identities=45% Similarity=0.602 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQP 128 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (369)
.+|+.++.+|++.|+++.|..+|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.3e-05 Score=61.72 Aligned_cols=92 Identities=11% Similarity=0.012 Sum_probs=65.8
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCH
Q 036461 207 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI 286 (369)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 286 (369)
...+...|+++.|+..|.++++.... +...|..+..++...|++++|+..++++++.. +.+...+..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 44556677888888888877776443 55667777777777788888888777777753 33566677777777777888
Q ss_pred HHHHHHHHHHHHcC
Q 036461 287 VEAVELFRTLRILK 300 (369)
Q Consensus 287 ~~a~~~~~~~~~~~ 300 (369)
++|...|++.....
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888887777654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00042 Score=60.53 Aligned_cols=139 Identities=10% Similarity=-0.034 Sum_probs=85.0
Q ss_pred cCCCcCHhHHHHHHHHHHhcC-----ChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC--------ChHHH
Q 036461 13 FGCEPNVFTYNTLINGLCRTG-----HTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG--------FVDKA 79 (369)
Q Consensus 13 ~g~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a 79 (369)
.+.+.+..+|...+++..... +...|+.+|+++.+.+ |.+...+..+..++.... +...+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-------P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a 403 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-------PDFTYAQAEKALADIVRHSQQPLDEKQLAAL 403 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 345778899999998865433 3668999999999977 334556665544443221 12233
Q ss_pred HHHHHHhHhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 036461 80 KELFLKMKDE-NINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQ 158 (369)
Q Consensus 80 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (369)
.+...+.... ..+.+...|..+...+...|++++|...+++.+..+ |+...|..+...+...|+.++|...+++...
T Consensus 404 ~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 404 STELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3333332221 123344556655555555677777777777776653 4566666667777777777777777776666
Q ss_pred cC
Q 036461 159 IG 160 (369)
Q Consensus 159 ~~ 160 (369)
.+
T Consensus 482 L~ 483 (517)
T PRK10153 482 LR 483 (517)
T ss_pred cC
Confidence 53
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00031 Score=52.09 Aligned_cols=84 Identities=17% Similarity=0.072 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc--HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 036461 202 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPD--VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDG 279 (369)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (369)
.+..+...+...|++++|...|++..+....+. ...+..+...+...|++++|...+.+..+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445555556666666666666666655432221 2345555566666666666666666655542 2234444455555
Q ss_pred HHhCCCH
Q 036461 280 LCKNGYI 286 (369)
Q Consensus 280 ~~~~g~~ 286 (369)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 5555543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00018 Score=53.18 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036461 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINP--NVVTYNSLIHGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (369)
..|..++..+...|++++|+..|++.......+ ...++..+..++...|++++|+..+++...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444555555555555555554321111 123444455555555555555555555544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0015 Score=53.26 Aligned_cols=266 Identities=12% Similarity=0.001 Sum_probs=166.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 036461 63 YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK 142 (369)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (369)
.......+.+..++..|+..+...++.. +.+...|..-+..+...+++++|.--.+.-++.... ........-+++..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhh
Confidence 3344455677788999999999998874 336667777777777888888887777665543211 12233334444444
Q ss_pred CCChhHHHHHHHHH---------------HHcCC-CccHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHH
Q 036461 143 NGKMDEASRLLELM---------------IQIGV-RPNAFVYNTL-MDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSI 205 (369)
Q Consensus 143 ~~~~~~a~~~~~~~---------------~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (369)
.++..+|.+.++.- ..... +|...++..+ ..++.-.|+.+.|.+.--.+.+.. ..+....-.
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~v 208 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYV 208 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHh
Confidence 44444444433311 11111 2333344333 245667899999998888887764 333333333
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHH-------------HHHHHHhcccHHHHHHHHHHHHHc---CCCcC
Q 036461 206 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNT-------------LFIGLFEIHQVERAFKLFDEMQRH---GVAAD 269 (369)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 269 (369)
-..++...++.+.+...|++.+..+ |+...-.. =..-..+.|.+..|.+.+.+.+.. +..++
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred cccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 3344556788999999999988864 33322111 122345778899999999988764 34455
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 270 TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
...|.....+..+.|+..+|+.--+.....+ +.-...+..-..++...+++++|.+-|++..+.
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6667777777888999999999888888653 112233344445667778889998888887664
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0005 Score=50.98 Aligned_cols=91 Identities=18% Similarity=0.090 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 036461 165 AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKH--NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 242 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (369)
...+..+...+...|++++|...|++..+....+ ....+..+..++.+.|++++|...+.+..+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 4456677777888888888888888887653222 2456777888888888888888888888876332 455566667
Q ss_pred HHHHhcccHHHHHH
Q 036461 243 IGLFEIHQVERAFK 256 (369)
Q Consensus 243 ~~~~~~~~~~~a~~ 256 (369)
..+...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 77777666555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.4e-05 Score=47.10 Aligned_cols=61 Identities=26% Similarity=0.185 Sum_probs=42.5
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHH
Q 036461 281 CKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYN 344 (369)
Q Consensus 281 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 344 (369)
...|++++|...|+.+.... |.+..++..++.+|.+.|++++|..+++++... .|+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence 45677888888888877665 457777777788888888888888888887765 44533333
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00016 Score=47.45 Aligned_cols=78 Identities=15% Similarity=0.345 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhCCC-CCCHHhHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCChhhHH
Q 036461 64 TTIIDGLCKEGFVDKAKELFLKMKDENI-NPNVVTYNSLIHGFCYAN--------DWNEAKCLFIEMMDQGVQPNVVSFN 134 (369)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (369)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555666778888888888887777 778888887777666542 2334455666666666666666666
Q ss_pred HHHHHHH
Q 036461 135 VIMNELC 141 (369)
Q Consensus 135 ~l~~~~~ 141 (369)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 6665544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00025 Score=52.36 Aligned_cols=61 Identities=16% Similarity=0.066 Sum_probs=27.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCC--cHHhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 036461 203 YSILINGYCKNKEIEGALSLYSEMLSKGIKP--DVVIYNTLFIGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (369)
+..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444455555555555444332111 112344444445555555555555544443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.9e-05 Score=48.25 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=39.2
Q ss_pred HhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 30 CRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 30 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
.+.|++++|+++|+++.... |.+...+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677888888888877765 456777777888888888888888888777765
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00044 Score=54.11 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=67.1
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG---YIVEAVELFRTLRILKYELDIRAYNC 310 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (369)
|...|..|...|...|+.+.|...|.+..+.. ++++..+..+..++..+. ...++..+++++...+ +.|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 66677777777777777777777777776652 345666666665554332 3556777777777665 556667777
Q ss_pred HHHHHHcCCCHHHHHHHHHhcccC
Q 036461 311 LIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 311 l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 777777777777777777777765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0025 Score=46.16 Aligned_cols=157 Identities=17% Similarity=0.089 Sum_probs=112.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccH
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQV 251 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (369)
..+..+.=+++...+-..+-.. ..|++..--.+..+..+.|+..+|...|++...--+..|......+.++....+++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 63 LMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 3344444444444433333332 25777777788888999999999999999988765566777888888888889999
Q ss_pred HHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 036461 252 ERAFKLFDEMQRHGVA-ADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRS 330 (369)
Q Consensus 252 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 330 (369)
..|...++.+.+.... -++.....+.+.+...|.+..|...|+..... -|+...-......+.++|+.+++..-+..
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 9999999988775311 12334566788888999999999999988876 56776666667778888887777655544
Q ss_pred cc
Q 036461 331 LP 332 (369)
Q Consensus 331 ~~ 332 (369)
+.
T Consensus 219 v~ 220 (251)
T COG4700 219 VV 220 (251)
T ss_pred HH
Confidence 43
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00064 Score=53.23 Aligned_cols=102 Identities=11% Similarity=0.126 Sum_probs=66.4
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCChhhH
Q 036461 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN---DWNEAKCLFIEMMDQGVQPNVVSF 133 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 133 (369)
|.|...|-.|...|...|++..|...|.+..+. .++++..+..+..++..+. .-.++..+|+++.... +-+..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 556777777777777777777777777777664 2345666655555544332 3556677777777653 2355566
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 134 NVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
..+...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 666667777777777777777777664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0036 Score=47.83 Aligned_cols=67 Identities=12% Similarity=0.066 Sum_probs=42.5
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
+..+-.....+...|++.+|+..|+.+....+. .+--......++.++.+.|+++.|...+++..+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~----s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN----SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455566677778888888888888776521 1122445666777777888888888888877654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00018 Score=55.96 Aligned_cols=99 Identities=21% Similarity=0.212 Sum_probs=78.5
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHH
Q 036461 208 NGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIV 287 (369)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 287 (369)
.-+.+.+++.+|+..|.+.++..+. |.+.|..=..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 3466788999999999999987544 77778888889999999999998888888754 224668888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH
Q 036461 288 EAVELFRTLRILKYELDIRAYNC 310 (369)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~ 310 (369)
+|++.|++.++. .|+..+|..
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHH
Confidence 999999988876 566555543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00025 Score=46.54 Aligned_cols=78 Identities=18% Similarity=0.353 Sum_probs=59.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhCC--------ChhHHHHHHHHHHHcCCCccHHHHHH
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQGV-QPNVVSFNVIMNELCKNG--------KMDEASRLLELMIQIGVRPNAFVYNT 170 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (369)
..|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. +..+.+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445556666888888888888888888 788888888888776643 24456777888888888888888888
Q ss_pred HHHHHHh
Q 036461 171 LMDGFCL 177 (369)
Q Consensus 171 l~~~~~~ 177 (369)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00036 Score=56.82 Aligned_cols=265 Identities=14% Similarity=0.104 Sum_probs=165.4
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccc----hhhHHHHHHHHHhcCChHHHHHHHHHh--HhC--CC-CCCHHh
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN----TVTYTTIIDGLCKEGFVDKAKELFLKM--KDE--NI-NPNVVT 97 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~-~~~~~~ 97 (369)
.-+++.|+....+.+|+...+.+ ..| ..+|..|..+|.-.+++++|+++...= ..+ |- .-...+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-------TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-------TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-------chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence 46899999999999999999987 334 345677777888888999998864321 110 10 012223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----hcCCC-CChhhHHHHHHHHHhCCC--------------------hhHHHHH
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMM----DQGVQ-PNVVSFNVIMNELCKNGK--------------------MDEASRL 152 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~ 152 (369)
-..|...+--.|.+++|.....+-+ +.|-. .....+..+...|...|+ ++.|.++
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 3345555666777887766543322 22211 123345556666665443 1233444
Q ss_pred HHHHHH----cCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHH----hcCC-CchHHHHHHHHHHHhhcCChHHHHHH
Q 036461 153 LELMIQ----IGVR-PNAFVYNTLMDGFCLTGRVNRAEELFVSME----SMGC-KHNVFSYSILINGYCKNKEIEGALSL 222 (369)
Q Consensus 153 ~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (369)
|.+=++ .|-. .--..|..|.+.|.-.|+++.|+...+.-. +.|- .....++..+..++.-.|+++.|.+.
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 433221 1100 112356677777888899999987765432 2221 12345678888999999999999999
Q ss_pred HHHHHhC----CC-CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc-----CCCcCHHHHHHHHHHHHhCCCHHHHHHH
Q 036461 223 YSEMLSK----GI-KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH-----GVAADTWAYRTFIDGLCKNGYIVEAVEL 292 (369)
Q Consensus 223 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (369)
|+..... |- .........|...|.-..++++|+.++.+-+.. +..-....+-++..++...|..++|+.+
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 8876542 21 223345667888888888999999988764431 1112455777888999999999999888
Q ss_pred HHHHHH
Q 036461 293 FRTLRI 298 (369)
Q Consensus 293 ~~~~~~ 298 (369)
.+.-.+
T Consensus 338 ae~hl~ 343 (639)
T KOG1130|consen 338 AELHLR 343 (639)
T ss_pred HHHHHH
Confidence 776553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0016 Score=56.94 Aligned_cols=137 Identities=12% Similarity=0.022 Sum_probs=94.9
Q ss_pred CCchHHHHHHHHHHHhh--c---CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc--------ccHHHHHHHHHHHH
Q 036461 196 CKHNVFSYSILINGYCK--N---KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEI--------HQVERAFKLFDEMQ 262 (369)
Q Consensus 196 ~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 262 (369)
.+.+...|...+++... . ++...|..+|++.++..+. ....+..+..++... .+...+.+......
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 35677788887777543 2 3367899999999987433 334455444433322 12234444444433
Q ss_pred Hc-CCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 036461 263 RH-GVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGV 335 (369)
Q Consensus 263 ~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 335 (369)
.. ..+.++..+..+.......|++++|...++++...+ |+...|..+...+...|++++|...++++...+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 32 133456677777777777899999999999999885 678899999999999999999999999988753
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.4e-05 Score=46.74 Aligned_cols=65 Identities=22% Similarity=0.131 Sum_probs=56.0
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC-ChHHHHHHHHHhHhC
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG-FVDKAKELFLKMKDE 89 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 89 (369)
++.+|..+...+.+.|++++|+..|++..+.+ |.++..|..+..++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788889999999999999999999999876 567888999999999998 799999999887763
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.8e-05 Score=45.54 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=37.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 25 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 25 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
+...+.+.|++++|+..|+++.+.. |-+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666677777777777776665 345666666667777777777777777666553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0012 Score=45.04 Aligned_cols=91 Identities=16% Similarity=0.074 Sum_probs=43.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc--hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC---CHHhHH
Q 036461 25 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN--TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP---NVVTYN 99 (369)
Q Consensus 25 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 99 (369)
...++-..|+.++|+.+|++....+ .... ...+..+...+...|++++|+.++++..... +. +.....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~g------L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~ 79 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAG------LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRV 79 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHH
Confidence 3444555566666666666665544 1111 2344455555555666666666666555431 11 111222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMM 122 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~ 122 (369)
.+..++...|+.++|++++-...
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 22334445555555555554443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0012 Score=44.97 Aligned_cols=95 Identities=15% Similarity=0.068 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CChhhHHHHHHH
Q 036461 64 TTIIDGLCKEGFVDKAKELFLKMKDENINPN--VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ--PNVVSFNVIMNE 139 (369)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 139 (369)
..+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++.....+. .+......+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3445566667777777777777777665433 334555666777777777777777777654211 011222233345
Q ss_pred HHhCCChhHHHHHHHHHHH
Q 036461 140 LCKNGKMDEASRLLELMIQ 158 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~ 158 (369)
+...|+.++|+..+-....
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5666777777766655543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00024 Score=55.30 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=65.3
Q ss_pred HHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhH
Q 036461 69 GLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDE 148 (369)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (369)
-+.+.+++++|+..|.+.+.. .|-|...|..-..+|.+.|.++.|++-.+..+.... -...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHHH
Confidence 345667777777777777765 234666666777777777777777777777666532 234567777777777777777
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHH
Q 036461 149 ASRLLELMIQIGVRPNAFVYNTLM 172 (369)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~ 172 (369)
|.+.|++.++. .|+-.+|..=+
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHH
Confidence 77777777665 34444444333
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0056 Score=46.78 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDEN--INPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
...+-.....+...|++.+|.+.|+.+.... -+--......++.++.+.|+++.|...++++++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444455556667788888888888877641 1122344556677777888888888888887765
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.7e-05 Score=45.28 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=32.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 277 IDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
...+...|++++|...|+.+.+.. +.+...+..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666666666666554 33555666666666666666666666666554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.013 Score=51.57 Aligned_cols=205 Identities=11% Similarity=0.079 Sum_probs=121.2
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHH----------HHhcCCHHHHHHHHHHHHhcCC
Q 036461 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHG----------FCYANDWNEAKCLFIEMMDQGV 126 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~a~~~~~~~~~~~~ 126 (369)
.|.+..|..+.......-.++.|...|-+.... +.+.....|-.. -.--|++++|.++|-++-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 588999999999888888888888888776543 122111111111 122478999999887775442
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHH
Q 036461 127 QPNVVSFNVIMNELCKNGKMDEASRLLELMIQI-GVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSI 205 (369)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (369)
..+..+.+.|++-.+.++++.--.. .-..-...++.+...+.....|+.|.+.+...... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 3455667778887776666431110 00112456778888888888888888877654321 23
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 206 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
.+.++.+..++++-..+...+ +.+....-.+...+.+.|.-++|.+.+-+. +. | ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHH
Confidence 345555555555544443332 224555566667777777777776655322 11 1 234455666666
Q ss_pred HHHHHHHHHHH
Q 036461 286 IVEAVELFRTL 296 (369)
Q Consensus 286 ~~~a~~~~~~~ 296 (369)
|.+|.++-++.
T Consensus 894 W~~avelaq~~ 904 (1189)
T KOG2041|consen 894 WGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHhc
Confidence 66666665543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.84 E-value=3e-05 Score=38.65 Aligned_cols=29 Identities=38% Similarity=0.774 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCC
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDEN 90 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 90 (369)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.2e-05 Score=38.58 Aligned_cols=29 Identities=48% Similarity=0.841 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQG 125 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (369)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57778888888888888888888877665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00019 Score=43.85 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcC-ChHHHHHHHHHHH
Q 036461 167 VYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNK-EIEGALSLYSEML 227 (369)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 227 (369)
.|..+...+...|++++|+..|++..+.. +.+...+..+..++...| ++++|+..+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444443 333444444444444444 3444444444443
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.022 Score=50.23 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=66.5
Q ss_pred cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-CCCCCHHhHHHHHHHHHhcCC
Q 036461 32 TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-NINPNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 32 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 110 (369)
-|++++|.++|-.+.+++ ..+..+.+.|++-...++++.--.. .-..-...|+.+...++....
T Consensus 747 ~g~feeaek~yld~drrD---------------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~ 811 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMME 811 (1189)
T ss_pred hcchhHhhhhhhccchhh---------------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 466777777766655433 1234444555555555544331110 000112344555555555555
Q ss_pred HHHHHHHHHHHHh---------------------cCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHH
Q 036461 111 WNEAKCLFIEMMD---------------------QGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYN 169 (369)
Q Consensus 111 ~~~a~~~~~~~~~---------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (369)
|++|.+.|..-.. ..++-+....-.+..++.+.|.-++|.+.|-+. +. | .
T Consensus 812 We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----k 882 (1189)
T KOG2041|consen 812 WEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----K 882 (1189)
T ss_pred HHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----H
Confidence 5555554433210 112334445556666667777777666655432 21 1 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 036461 170 TLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
..+..|...++|.+|.++-++.
T Consensus 883 aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 883 AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 2345566667777776665543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00061 Score=53.87 Aligned_cols=99 Identities=11% Similarity=-0.026 Sum_probs=69.5
Q ss_pred HhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHH
Q 036461 236 VIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAAD--TWAYRTFIDGLCKNGYIVEAVELFRTLRILK--YELDIRAYNCL 311 (369)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l 311 (369)
..|......+.+.|++++|...|+.+++...... +..+..+..+|...|++++|...|+.+.+.. .+.....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555444667888888888888887532211 3567778888888888888888888888652 11234555566
Q ss_pred HHHHHcCCCHHHHHHHHHhcccC
Q 036461 312 IDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 312 ~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
+..+...|+.+.|..+|+++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777888888888888888775
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00071 Score=55.15 Aligned_cols=129 Identities=14% Similarity=0.023 Sum_probs=73.1
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHH----HcCCC-cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCCHH
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQ----RHGVA-ADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL----KY-ELDIR 306 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 306 (369)
.|..|...|.-.|+++.|+...+.-+ +.|-. .....+..+..++.-.|+++.|.+.|+..... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34455555556677777766554322 22211 12234566677777777888887777665432 21 11223
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhccc----C-CcccCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 307 AYNCLIDGLCKSGRLKIAWELFRSLPR----G-VLIADVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 307 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
...+|...|.-..+++.|+.++.+-.. . ........+.+|..+|...|..++|+.+.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344556666666667777766654321 0 1122455677778888888888888776554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0014 Score=46.77 Aligned_cols=118 Identities=10% Similarity=-0.026 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHHhCCCCC------cHHh---HHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 215 EIEGALSLYSEMLSKGIKP------DVVI---YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~------~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
+.++-.+.+.+.+..|..+ +..+ .-....-+...|++++|..+|.-+...+ +.+..-+..|..++...++
T Consensus 8 ~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~ 86 (165)
T PRK15331 8 SEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQ 86 (165)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHH
Confidence 4455555666666655332 1122 2233444567899999999999887765 3467777888888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 286 IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
+++|...|......+ ..|+..+.....++...|+.+.|...|+...+.
T Consensus 87 y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 87 FQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 999999998887766 456777778888999999999999999988874
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0086 Score=43.50 Aligned_cols=155 Identities=12% Similarity=0.039 Sum_probs=96.3
Q ss_pred HHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhH
Q 036461 69 GLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDE 148 (369)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (369)
+..+.=+++...+-..+-.. +.|+...-..|..+..+.|+..+|...|++...--..-|......+.++....+++..
T Consensus 65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence 33344445444333322222 3466666667777888888888888888887765445566667777777777888888
Q ss_pred HHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 036461 149 ASRLLELMIQIGVR-PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (369)
Q Consensus 149 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (369)
|...++.+.+.... .++.+...+.+.+...|.+.+|...|+...+. -|+...-......+.+.|+.+++..-+..+.
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 88888877765310 12233445667777788888888888887766 3555544444555666666555544444333
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=51.95 Aligned_cols=99 Identities=12% Similarity=0.027 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCC--CCCCHHhHH
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN--INPNVVTYN 99 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 99 (369)
|...+....+.|++++|+..|+.+.+..+.. +-.+.++..+..+|...|++++|...|+.+.+.- -+.....+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s----~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDS----TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 3333333344556666666666665544100 0002345555555556666666666666555421 111233333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
.+...+...|+.++|..+|+++++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444555555666666666555544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0096 Score=42.78 Aligned_cols=71 Identities=24% Similarity=0.276 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc-----CCcccCHHHH
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR-----GVLIADVVTY 343 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 343 (369)
....++..+...|++++|..+++.+.... |.+...+..++.+|...|+...|.+.|+++.+ .|+.|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44455566666777777777777777665 55666777777777777777777777766532 4566666543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.001 Score=49.59 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=54.6
Q ss_pred cHHhHHHHHHHHHh-----cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036461 234 DVVIYNTLFIGLFE-----IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAY 308 (369)
Q Consensus 234 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 308 (369)
+..+|..++..+.+ .|..+=....+..|.+.|+.-|..+|+.|+..+=+ |.+- -..+|+.+--
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~---------- 113 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM---------- 113 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc----------
Confidence 56666666666543 34555555556666666666666666666665543 1111 0001111000
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh
Q 036461 309 NCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCA 352 (369)
Q Consensus 309 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 352 (369)
-.-.+-+-|++++++|...|+-||.+++..++..+.+
T Consensus 114 -------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 114 -------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred -------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 0012345567777777777777777777777777743
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.02 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=16.0
Q ss_pred HHHHcCCCHHHHHHHHHhcccC
Q 036461 313 DGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 313 ~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.+|.+.|+..+|.++++++...
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 3566677888888888887654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.018 Score=44.45 Aligned_cols=229 Identities=13% Similarity=0.064 Sum_probs=133.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCC-----CCcccccch-----hhHHHHHHHH--HhcCChHHHHHHHHHhHh
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGE-----FGVVCKPNT-----VTYTTIIDGL--CKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~-----~~~~~l~~~~--~~~~~~~~a~~~~~~~~~ 88 (369)
.|+.-+.++.+....++|..-++.....+.+ +-+.+.|+. ..-..++++. ...|+..+.+.-+..+..
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~ 150 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKT 150 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 5666777888888888887776666554421 000011110 0111222221 223444444433333322
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHH
Q 036461 89 ENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVY 168 (369)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (369)
. ....+..+-.....+..+..|++-. ..+.+.++.++...+.+.-....+...++...+.++...
T Consensus 151 ~--------V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~ 215 (366)
T KOG2796|consen 151 V--------VSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL 215 (366)
T ss_pred H--------HHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence 1 0112222222233344455554432 224456677777778888888888888887767778888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 036461 169 NTLMDGFCLTGRVNRAEELFVSMESMGCK-----HNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 243 (369)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (369)
..+++...+.||.+.|...|++..+.... ....+.......+.-.+++..|...+.++...+.. +....|.-.-
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKAL 294 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKAL 294 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHH
Confidence 88888888889999999888877654222 23333334445566677888888888888776433 4444444444
Q ss_pred HHHhcccHHHHHHHHHHHHHcC
Q 036461 244 GLFEIHQVERAFKLFDEMQRHG 265 (369)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~ 265 (369)
+..-.|+...|++.++.+....
T Consensus 295 cllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 295 CLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 4555678888888888888753
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0039 Score=46.63 Aligned_cols=105 Identities=18% Similarity=0.292 Sum_probs=66.3
Q ss_pred CccHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHH
Q 036461 162 RPNAFVYNTLMDGFCLT-----GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV 236 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (369)
..+..+|..+++.+.+. |..+-....++.|.+.|+..|..+|+.|+..+=+ |.+- |..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-
Confidence 34666777777766543 5566666667777777777777777777766543 2211 111
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
.+.+.... .-.+-+-|++++++|..+|+-||.+++..+++.+.+.+.
T Consensus 107 ~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111111 123456788888999988988999999888888866654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.011 Score=42.29 Aligned_cols=91 Identities=9% Similarity=-0.092 Sum_probs=73.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 206 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
...-+...|++++|..+|.-+...++. +..-+..|..++-..+++++|+..|......+. -|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 334456789999999999998886544 666778888888899999999999988765542 355556678889999999
Q ss_pred HHHHHHHHHHHHH
Q 036461 286 IVEAVELFRTLRI 298 (369)
Q Consensus 286 ~~~a~~~~~~~~~ 298 (369)
.+.|...|+....
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998886
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0005 Score=49.44 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChhhHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMD-----QGVQPNVVSFN 134 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 134 (369)
..+...++..+...|+++.|..+.+.+... -|.+...|..++.+|...|+...|.+.|+++.. .|+.|+..+-.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 456777788888889999999999998876 366888999999999999999999998888743 48888776643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.024 Score=43.78 Aligned_cols=141 Identities=13% Similarity=0.035 Sum_probs=108.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC-----CCcCHHHHHHH
Q 036461 202 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG-----VAADTWAYRTF 276 (369)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l 276 (369)
+.+.++.++...|.+.-....+.+.++...+.++.....|++.-.+.||.+.|...+++..+.. +..+.......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456777777888999999999999998777788889999999999999999999999877532 22233333344
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHH
Q 036461 277 IDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNI 345 (369)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 345 (369)
...+.-++++.+|...+.++...+ +.++...|.-+-+..-.|+...|++..+.+... .|.+.+-++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 455667889999999999888776 556777777666777789999999999999886 444444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00042 Score=43.57 Aligned_cols=61 Identities=20% Similarity=0.154 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcccC----C-cccC-HHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 306 RAYNCLIDGLCKSGRLKIAWELFRSLPRG----V-LIAD-VVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 306 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
.+++.+...|...|++++|+..|++..+. | -.|+ ..++..+..++...|++++|++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555566666666666555554421 1 1121 345556666666666666666666654
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.041 Score=46.00 Aligned_cols=80 Identities=14% Similarity=0.185 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCCC----CHHHHHHHHHH--HHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHH
Q 036461 286 IVEAVELFRTLRILKYEL----DIRAYNCLIDG--LCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKA 359 (369)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 359 (369)
+..-..+-+-+.+.|++| +...-|.|.++ +...|++.++.-.-.-+.+ +.|++.+|..++-++....+|++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 344444444445556655 23344555443 4567888888765555544 578999999999999999999999
Q ss_pred HHHHHHhh
Q 036461 360 RDLFLDME 367 (369)
Q Consensus 360 ~~~~~~m~ 367 (369)
..++.++.
T Consensus 515 ~~~l~~LP 522 (549)
T PF07079_consen 515 WEYLQKLP 522 (549)
T ss_pred HHHHHhCC
Confidence 99988763
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00019 Score=45.15 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=52.4
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc-hhhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
..+|+.+...+...|++++|++.|++..+.....+. -.|+ ..++..+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457899999999999999999999998864211111 1232 56788889999999999999999988754
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00064 Score=42.06 Aligned_cols=55 Identities=18% Similarity=0.017 Sum_probs=30.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 279 GLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 279 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.|.+.+++++|..+++.+...+ |.++..+.....++...|++++|...|++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555555555554 345555555555555555555555555555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00093 Score=41.33 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=37.1
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
..+.+.++++.|++.++.+...+ |.++..+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-------PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666677777777777776665 445666666666677777777777777766654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.044 Score=45.43 Aligned_cols=167 Identities=14% Similarity=0.118 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCccHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCchHHHHHH
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIG---VRPNAFVYNTLMDGFCL---TGRVNRAEELFVSMESMGCKHNVFSYSI 205 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (369)
+...++-+|....+++...++.+.+.... +......-....-++.+ .|+.++|++++..+......+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34455556777788888888888877652 11122222334445555 7788888888877554444677777777
Q ss_pred HHHHHhh---------cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc-HH---HHHHHH---HH-HHHcC---
Q 036461 206 LINGYCK---------NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ-VE---RAFKLF---DE-MQRHG--- 265 (369)
Q Consensus 206 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~-~~~~~--- 265 (369)
+...|-. ....++|+..|.+.-+.. |+..+=-.++..+...|. .+ +..++- .. +.+.|
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 7766532 123566777776665542 333221111111222222 11 112211 11 11222
Q ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 266 VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
-..+-+.+..++.++.-.|+.++|.+.++++....
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 23456667777777777888888888888877653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0047 Score=42.60 Aligned_cols=88 Identities=13% Similarity=0.022 Sum_probs=57.3
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCC---------CCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNG---------EFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
|..++..++.++++.|+.+....+++..-..+. ..+.+..|+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 467889999999999999999999887665431 12223455566666666666666666666666666543
Q ss_pred C-CCCCCHHhHHHHHHHH
Q 036461 89 E-NINPNVVTYNSLIHGF 105 (369)
Q Consensus 89 ~-~~~~~~~~~~~l~~~~ 105 (369)
. +++-+..+|..|+.-.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 2 4555555666555433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.027 Score=49.17 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHH
Q 036461 115 KCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLEL 155 (369)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 155 (369)
..-++++.++|-.|+.. .+...++-.|++.+|.++|.+
T Consensus 620 i~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHH
Confidence 33445555565555543 234455556666666666643
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.07 Score=44.30 Aligned_cols=163 Identities=13% Similarity=0.029 Sum_probs=81.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQG---VQPNVVSFNVIMNELCK---NGKMDEASRLLELMIQIGVRPNAFVYNTLMD 173 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (369)
.++-.|....+++..+++.+.+.... +.-+...-...+-++.+ .|+.++|++++..+......+++.++..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34444556666666666666665431 11111122223334444 5666666666666444444555566655555
Q ss_pred HHHh---------cCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCh----HHHHHHH---HH-HHhCC---CCC
Q 036461 174 GFCL---------TGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEI----EGALSLY---SE-MLSKG---IKP 233 (369)
Q Consensus 174 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~---~~-~~~~~---~~~ 233 (369)
.|-. ....++|+..|.+.-... ++...--.++..+.-.|.. .+..++- .. +.++| ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 4421 112566666666654432 3322211111122222211 1111111 11 11222 234
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
+...+..++.++.-.|+.++|.+..+.+.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 6666778888888889999999999888876
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.015 Score=48.93 Aligned_cols=66 Identities=20% Similarity=0.061 Sum_probs=52.9
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc-h---hhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-T---VTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
|.+...|+.+..+|.+.|++++|+..|++..+.+ |+ . .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--------Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--------PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566788888888888888888888888888865 44 3 35888888888888888888888888774
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.012 Score=48.26 Aligned_cols=94 Identities=14% Similarity=0.024 Sum_probs=50.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhC-----CCCCc---------HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCH
Q 036461 205 ILINGYCKNKEIEGALSLYSEMLSK-----GIKPD---------VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT 270 (369)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 270 (369)
.-...+.+.|++..|...|++++.. +..+. ...+..+..++.+.+++..|+......+..+ ++|.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence 3455677778888888887776652 11110 1223344445555555555555555555543 3344
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 271 WAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
..+-.-.+++...|+++.|+..|+++.+.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44444555555555555555555555544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.11 Score=45.26 Aligned_cols=332 Identities=11% Similarity=0.038 Sum_probs=188.5
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
+...|..+|.---...+.+.+..++..+.... |--...|......-.+.|..+.+.++|++.... ++.+...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-------Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~Svdl 115 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY-------PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDL 115 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC-------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHH
Confidence 44456666665555555566777777777654 333456677777777888899999999988764 6777777
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHhc-CCC-CChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 036461 98 YNSLIHGFC-YANDWNEAKCLFIEMMDQ-GVQ-PNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDG 174 (369)
Q Consensus 98 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (369)
|...+..+. ..|+.+.....|+..... |.. .+...|...+..-...+++.....+|+++++.....=...|......
T Consensus 116 W~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 116 WLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHH
Confidence 777665444 456777777778777653 221 23446777777777788888888888888775211111111111111
Q ss_pred HHh-----cCChHHHHHHHHHHHh--------------------cCCCchH--HHHHHH-------HHHHhhcCChHHHH
Q 036461 175 FCL-----TGRVNRAEELFVSMES--------------------MGCKHNV--FSYSIL-------INGYCKNKEIEGAL 220 (369)
Q Consensus 175 ~~~-----~~~~~~a~~~~~~~~~--------------------~~~~~~~--~~~~~l-------~~~~~~~~~~~~a~ 220 (369)
.-. ....+++.++-..... .+.+.+. ...+.+ -.++..........
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr 275 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKR 275 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 111 1122222222211110 0000000 001111 11111222233333
Q ss_pred HHHHHHHhC---CCC----CcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 221 SLYSEMLSK---GIK----PDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 221 ~~~~~~~~~---~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
..++.-+.+ .++ ++..+|...+.--...|+.+.+.-++++..-. +..=...|-..+......|+.+-|..++
T Consensus 276 ~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 276 WGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 334433332 122 24456777777778889999999988887642 1122345555555556669988888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHH-HHHHHHHHHHhcCchHHHH
Q 036461 294 RTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVV-TYNIMIHALCADGKMDKAR 360 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 360 (369)
....+...+..+.+--.-....-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+.
T Consensus 355 ~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 355 ARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 877766544444433333344556789999999999988763 4433 2233444566778877776
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.082 Score=43.36 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEE 44 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~ 44 (369)
+|..+.......|+..-|..+++.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~ 25 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL 25 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc
Confidence 466777888889999999888773
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.033 Score=48.57 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=14.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcC
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANG 48 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~ 48 (369)
.++....=.||-+.+++.+....+.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~ 217 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKS 217 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhcc
Confidence 3444444556666666666665553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.11 Score=43.70 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=63.3
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
|.|+.+|..|+.-+..+|..++..++++++.... |--+.+|..-+.+-...+++.....+|.+...... +.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-------p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~l 109 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-------PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NL 109 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-------ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cH
Confidence 6788899999999999999999999999998753 44567788888877777888888888888776533 45
Q ss_pred HhHHHHHHHH
Q 036461 96 VTYNSLIHGF 105 (369)
Q Consensus 96 ~~~~~l~~~~ 105 (369)
..|...+...
T Consensus 110 dLW~lYl~YI 119 (660)
T COG5107 110 DLWMLYLEYI 119 (660)
T ss_pred hHHHHHHHHH
Confidence 5555554433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.066 Score=46.74 Aligned_cols=162 Identities=19% Similarity=0.112 Sum_probs=106.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCC-CCCcH-----HhHHHHHHHHHh----cccHHHHHHHHHHHHHcCCCcCHHH
Q 036461 203 YSILINGYCKNKEIEGALSLYSEMLSKG-IKPDV-----VIYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWA 272 (369)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 272 (369)
+..+++...-.||-+.+++.+.+..+.+ +.-.. -.|...+..+.. ..+.+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4556666667789999999888876642 22111 112223332322 45678899999998875 356555
Q ss_pred HH-HHHHHHHhCCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHH
Q 036461 273 YR-TFIDGLCKNGYIVEAVELFRTLRILK--Y-ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIH 348 (369)
Q Consensus 273 ~~-~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 348 (369)
|. .-.+.+...|++++|++.+++..... . +.....+..++..+.-.+++++|...|..+.+.. ..+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 44 34566778899999999999765321 1 2244566677888888999999999999998753 224444444443
Q ss_pred -HHHhcCch-------HHHHHHHHHhh
Q 036461 349 -ALCADGKM-------DKARDLFLDME 367 (369)
Q Consensus 349 -~~~~~g~~-------~~A~~~~~~m~ 367 (369)
++...|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 44567877 88888887654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.11 Score=42.77 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=21.2
Q ss_pred hCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036461 142 KNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
+.|+.+.|.++-+.....- +.-...+...+...+..|+|+.|+++++.-
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3444444444444443332 112233444444444455555555544443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.11 Score=42.67 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=23.9
Q ss_pred hcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 177 LTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
+.|+.+.|..+-++....- +.-...+...+...+..|+++.|+++++.-
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 4455555555555544332 222334445555555555555555555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.025 Score=46.55 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc-----CCCc---------hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc
Q 036461 169 NTLMDGFCLTGRVNRAEELFVSMESM-----GCKH---------NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 234 (369)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (369)
..-.+.+.+.|++..|..-|+++... +.++ -..++..+..++.+.+++..|+..-.+.+..+. +|
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N 290 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NN 290 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-Cc
Confidence 34466778888888888888876532 1111 123456677777888888888888888887653 36
Q ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHH
Q 036461 235 VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI-VEAVELFRTLRI 298 (369)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 298 (369)
....-.=.+++...++++.|+..|+.+++.. +.|...-..++.+-.+.... +...++|..|..
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666777888888888888888888753 22333333344333333322 233555665553
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.095 Score=41.42 Aligned_cols=145 Identities=14% Similarity=0.089 Sum_probs=73.7
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 106 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (369)
......|++.+|..+|....... +.+...-..++.+|...|+.+.|..++..+...--.........-+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 34556677777777777776655 34456666677777777777777777776654311111111112233333
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCC
Q 036461 107 YANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGV-RPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 180 (369)
+.....+...+-.++-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+. -.|...-..++..+.-.|.
T Consensus 215 qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 215 QAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 333333333333333322 12444444555566666666666665555544311 1233344445555544443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.089 Score=40.28 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhccc---CCcccCHHHHHHHHHHHHhcCchHHHHHHH
Q 036461 308 YNCLIDGLCKSGRLKIAWELFRSLPR---GVLIADVVTYNIMIHALCADGKMDKARDLF 363 (369)
Q Consensus 308 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (369)
+-..|-.+....++..|.+.++.--+ ..-+-+..+...|+.+|- .|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 33444445555566666666665322 111223445555555553 35555554443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0019 Score=35.13 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHH
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIID 68 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (369)
.+|..+...+.+.|++++|+++|+++.+.. |.|+..+..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCCHHHHHHhhh
Confidence 578889999999999999999999999987 566777766653
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.24 Score=44.40 Aligned_cols=326 Identities=14% Similarity=0.086 Sum_probs=178.7
Q ss_pred HHcCCCcCHhHHHH-----HHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCCh--HHHHHHH
Q 036461 11 RVFGCEPNVFTYNT-----LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFV--DKAKELF 83 (369)
Q Consensus 11 ~~~g~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~ 83 (369)
...|++.+..-|.. +|.-+...+.+..|+++-..+.... ..+...|.....-+.+..+. +.+++.+
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-------~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I 496 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE-------SQGDRVLLEWARRKIKQSDKMDEEVLDKI 496 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc-------ccccHHHHHHHHHHHhccCccchHHHHHH
Confidence 44677777766654 5677788899999999988876533 12256777777777766322 2333333
Q ss_pred HHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 84 LKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ----PNVVSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
++=..... .+...|....+-....|+++-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+...
T Consensus 497 ~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~ 575 (829)
T KOG2280|consen 497 DEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK 575 (829)
T ss_pred HHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 32222212 34456777777778889999998887643222110 12223444556667777777777776665543
Q ss_pred C-----------CCccHHHHHHHHH--------HHHhcCChHHHHHHHHHHH--hc-CCCchHHHHHHHHHHHhhcCCh-
Q 036461 160 G-----------VRPNAFVYNTLMD--------GFCLTGRVNRAEELFVSME--SM-GCKHNVFSYSILINGYCKNKEI- 216 (369)
Q Consensus 160 ~-----------~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~~~~~l~~~~~~~~~~- 216 (369)
- .+.....|..+++ .+...++-.++...|..-. .. .+.+-..........+.+....
T Consensus 576 ~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s 655 (829)
T KOG2280|consen 576 LNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKS 655 (829)
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhh
Confidence 1 1111112222211 1111112112221111100 00 0011111222333333333221
Q ss_pred ---------HHHHHHHHHHHhC-CCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCH
Q 036461 217 ---------EGALSLYSEMLSK-GIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI 286 (369)
Q Consensus 217 ---------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 286 (369)
.+-+.+.+.+... |......+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..+++
T Consensus 656 ~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kw 731 (829)
T KOG2280|consen 656 FEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKW 731 (829)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhH
Confidence 1112222222221 222233344455555666788888887766654 36777888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHH
Q 036461 287 VEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLF 363 (369)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (369)
++-+++-+... ++.-|.-.+.+|.+.|+.++|.+++-+.... . -...+|.+.|++.+|.++-
T Consensus 732 eeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 732 EELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 88766555433 2556677788899999999998888776542 1 3566788888888887653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.038 Score=46.59 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=56.8
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV----VTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
|.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345778999999999999999999999998885 3443 35889999999999999999999999875
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.039 Score=38.12 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=31.2
Q ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 036461 266 VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRI-LKYELDIRAYNCLIDGL 315 (369)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 315 (369)
..|+..++.+++.+|+..|++..|.++.+.+.+ .+++.+..+|..|+..+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 446666666777777777777777776666653 24455566666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.32 Score=42.44 Aligned_cols=112 Identities=10% Similarity=0.174 Sum_probs=55.2
Q ss_pred HHHHHHHHHHcCCCcCHh-HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHH-hcCChHHHH
Q 036461 3 AAALFMKLRVFGCEPNVF-TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLC-KEGFVDKAK 80 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~ 80 (369)
++.+++.++.. .|... -|......-.+.|..+.+.++|++.... ++-+...|.....-+. ..|+.+...
T Consensus 64 ~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-------ip~SvdlW~~Y~~f~~n~~~d~~~lr 134 (577)
T KOG1258|consen 64 LREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-------IPLSVDLWLSYLAFLKNNNGDPETLR 134 (577)
T ss_pred HHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHhccCCCHHHHH
Confidence 34444444433 22222 4555555555556666666666665553 2444555544443332 345555555
Q ss_pred HHHHHhHhC-CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036461 81 ELFLKMKDE-NIN-PNVVTYNSLIHGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 81 ~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (369)
..|+..... |.. .....|...+..-..++++.....+++++++
T Consensus 135 ~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 135 DLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 556555442 111 1334455555555555555555555555554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.22 Score=40.31 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 166 FVYNTLMDGFCLTGRVN---RAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 166 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
.+...++.++...+..+ +|..+++.+.... +..+..+..-+..+.+.++.+.+.+.+.+|+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34555666666665543 3444444443332 223444444455555566777777777777665
|
It is also involved in sporulation []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.2 Score=42.52 Aligned_cols=114 Identities=13% Similarity=0.013 Sum_probs=67.2
Q ss_pred hHHHHHHHHH---HcCCCcCHhHHHHHHHHHHhc---------CChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHH
Q 036461 2 EAAALFMKLR---VFGCEPNVFTYNTLINGLCRT---------GHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDG 69 (369)
Q Consensus 2 ~A~~~~~~~~---~~g~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 69 (369)
+|+.+|.+.. +.+ |....+|..+..++... .+..+|.+..++..+.+ +.|+.+...+..+
T Consensus 276 ~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-------~~Da~a~~~~g~~ 347 (458)
T PRK11906 276 RAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-------TVDGKILAIMGLI 347 (458)
T ss_pred HHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHH
Confidence 4667777776 332 22244555444443322 23345666666677666 5566666667766
Q ss_pred HHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 70 LCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
....++++.|..+|++....+ |-...+|......+.-.|+.++|.+.+++..+.
T Consensus 348 ~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 348 TGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 666677777777777776642 223444555555555567777777777775554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.1 Score=42.00 Aligned_cols=154 Identities=16% Similarity=0.085 Sum_probs=110.2
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHH--hH--HHHHHHHHhcccH
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV--IY--NTLFIGLFEIHQV 251 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~--~~l~~~~~~~~~~ 251 (369)
-..|+..+|-..++++.+.- |.|..++...=.+|...|+...-...++++... -.+|.. +| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34678888888888887763 778888888888899999999999888888875 123332 22 3344455678899
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 036461 252 ERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL---KYELDIRAYNCLIDGLCKSGRLKIAWELF 328 (369)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 328 (369)
++|++.-++..+.+ +.|..........+.-.|++.++.++..+-... +.-.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998888764 457788888888888899999998887654421 10111233444455667778999999999
Q ss_pred Hhcc
Q 036461 329 RSLP 332 (369)
Q Consensus 329 ~~~~ 332 (369)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.22 Score=39.44 Aligned_cols=146 Identities=17% Similarity=0.111 Sum_probs=71.7
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (369)
.....|++.+|...|........ -+...-..+..+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 44555666666666666655532 23444455666666666666666666665433211112222223333444444444
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhCCCHH
Q 036461 219 ALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG-VAADTWAYRTFIDGLCKNGYIV 287 (369)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 287 (369)
...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+ ---|...-..++..+.-.|.-+
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 33443333332 1144445555666666666666666555544321 1123445555555555555333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.14 Score=44.08 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 243 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (369)
+...|..|.....+.|+++-|.+.|.+... +..++-.|...|+.+.-.++.+.....|- ++....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~ 410 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQ 410 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHH
Confidence 344555555555555555555555544332 23344444445555444444444443321 233333
Q ss_pred HHHhcccHHHHHHHH
Q 036461 244 GLFEIHQVERAFKLF 258 (369)
Q Consensus 244 ~~~~~~~~~~a~~~~ 258 (369)
++...|+.+++.+++
T Consensus 411 ~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 411 AALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHT-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 333445555554444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.21 Score=38.77 Aligned_cols=76 Identities=8% Similarity=0.014 Sum_probs=44.3
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 036461 66 IIDGLCKEGFVDKAKELFLKMKDEN--INPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELC 141 (369)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (369)
-+..-.+.|++++|.+.|+.+.... -+-...+...++.++.+.++++.|+..+++.+..-+.....-|...+.+++
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3334456677777777777776541 122334455566677777777777777777766533322333444444444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.32 Score=41.36 Aligned_cols=144 Identities=13% Similarity=0.045 Sum_probs=83.3
Q ss_pred ChHHHHHHHHHHHhC-CCCCc-HHhHHHHHHHHHh---------cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC
Q 036461 215 EIEGALSLYSEMLSK-GIKPD-VVIYNTLFIGLFE---------IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (369)
Q Consensus 215 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (369)
..+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.++.++..+.+ +.|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 345677777777722 22333 2334433333221 223445666666666664 34677777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccC---HHHHHHHHHHHHhcCchHHHH
Q 036461 284 GYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIAD---VVTYNIMIHALCADGKMDKAR 360 (369)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~ 360 (369)
++++.|...|++....+ |....+|......+...|+.++|.+.+++..+. .|. .......+..|+.. ..++|+
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 77888888888877765 445566666666777778888888888776654 232 22223333344443 345555
Q ss_pred HHH
Q 036461 361 DLF 363 (369)
Q Consensus 361 ~~~ 363 (369)
+++
T Consensus 428 ~~~ 430 (458)
T PRK11906 428 KLY 430 (458)
T ss_pred HHH
Confidence 544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.14 Score=35.96 Aligned_cols=66 Identities=9% Similarity=-0.026 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
..+..-.....+.|++.+|++.|+.+..+.+.+ +-...+...++.+|.+.++++.|...+++.++.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g----~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFG----EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344444555667777777777777777765321 223455666777777777777777777777664
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.011 Score=32.07 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=13.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 273 YRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
+..+...|...|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445555555555555555555544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.35 Score=39.51 Aligned_cols=227 Identities=14% Similarity=0.123 Sum_probs=108.6
Q ss_pred HHhcCChHHHHHHHHHhHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHH----HHHhcC-CCCChhhHHHHHHHHHh
Q 036461 70 LCKEGFVDKAKELFLKMKDE--NINPNVVTYNSLIHGFCYANDWNEAKCLFI----EMMDQG-VQPNVVSFNVIMNELCK 142 (369)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~-~~~~~~~~~~l~~~~~~ 142 (369)
+....+.++|+..+.+.... +....-.++..+..+.++.|.+++++..-- ...+.. -..-...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777887777776553 111122345556667777777666655322 121110 00011233344444444
Q ss_pred CCChhHHHHHHHHHHHc-CCCc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHhhc
Q 036461 143 NGKMDEASRLLELMIQI-GVRP---NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCK-----HNVFSYSILINGYCKN 213 (369)
Q Consensus 143 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 213 (369)
..++.+++.+-..-... |..| .-.....+..++...+.++++++.|+...+.... ....++..+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44455555544444332 1111 1122334555666666677777777666432111 1234566666666666
Q ss_pred CChHHHHHHHHHHHhC----CCCCcHH------hHHHHHHHHHhcccHHHHHHHHHHHHH----cCCCc-CHHHHHHHHH
Q 036461 214 KEIEGALSLYSEMLSK----GIKPDVV------IYNTLFIGLFEIHQVERAFKLFDEMQR----HGVAA-DTWAYRTFID 278 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~----~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~ 278 (369)
.|+++|.-+..+..+. ++. |.. ....+.-++...|....|.+..++..+ .|..+ .......+..
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 7777766665554431 111 111 112233344455555555555544332 33221 1223344555
Q ss_pred HHHhCCCHHHHHHHHHHHH
Q 036461 279 GLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 279 ~~~~~g~~~~a~~~~~~~~ 297 (369)
.|...|+.+.|..-|+.+.
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 6666666666666665544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.089 Score=41.10 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=41.5
Q ss_pred HhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCC--CCCCHHhHHHHHHHHHh
Q 036461 30 CRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN--INPNVVTYNSLIHGFCY 107 (369)
Q Consensus 30 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 107 (369)
.+.|++..|...|....+..+.. +-.+..+.-|..++...|+++.|..+|..+.+.- .+--+..+..|..+..+
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s----~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNS----TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCC----cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 34444555555555555544211 1112233344555555555555555555554421 01112334444445555
Q ss_pred cCCHHHHHHHHHHHHhc
Q 036461 108 ANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 108 ~~~~~~a~~~~~~~~~~ 124 (369)
.|+.++|..+|+++.++
T Consensus 228 l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 228 LGNTDEACATLQQVIKR 244 (262)
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 55555555555555544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.093 Score=41.02 Aligned_cols=88 Identities=16% Similarity=0.049 Sum_probs=44.9
Q ss_pred hcCChHHHHHHHHHHHhCCCC--CcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhCCCHH
Q 036461 212 KNKEIEGALSLYSEMLSKGIK--PDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGV--AADTWAYRTFIDGLCKNGYIV 287 (369)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 287 (369)
+.|++..|...|...++..+. -....+-.|..++...|+++.|..+|..+.+.-. +--++.+-.+..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344566666666655554211 1223344455556666666666666655554211 112345555555555666666
Q ss_pred HHHHHHHHHHHc
Q 036461 288 EAVELFRTLRIL 299 (369)
Q Consensus 288 ~a~~~~~~~~~~ 299 (369)
+|...|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.15 Score=34.89 Aligned_cols=90 Identities=16% Similarity=0.079 Sum_probs=43.0
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH---HhHHHHHHHH
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV---VTYNSLIHGF 105 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~ 105 (369)
+...|+.+.|++.|.+....- |.+...||.-..++.-.|+.++|++=+++..+..-+.+. ..|..-...|
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-------PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 444555555555555555432 344555555555555555555555555555442111111 1222233344
Q ss_pred HhcCCHHHHHHHHHHHHhcC
Q 036461 106 CYANDWNEAKCLFIEMMDQG 125 (369)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~ 125 (369)
...|+-+.|..-|+..-+.|
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 44555555555555544443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.22 Score=40.65 Aligned_cols=222 Identities=11% Similarity=0.033 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHcC--CCcCHhHHHHHHHHHHhcCChhHHHHHH----HHHHcCCCCCCcccccchhhHHHHHHHHHhcCC
Q 036461 2 EAAALFMKLRVFG--CEPNVFTYNTLINGLCRTGHTIVALNLF----EEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF 75 (369)
Q Consensus 2 ~A~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 75 (369)
+|+.+|.+....- ....-.++..+..+.++.|.+++++..- +....... ...--..|..+.+++-+..+
T Consensus 24 ~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d-----s~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 24 KALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED-----SDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 4555555544320 1122336777778888888888765532 22222110 01123456777777777777
Q ss_pred hHHHHHHHHHhHhC-CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhCCCh
Q 036461 76 VDKAKELFLKMKDE-NINP---NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQG-----VQPNVVSFNVIMNELCKNGKM 146 (369)
Q Consensus 76 ~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~ 146 (369)
+.+++.+-..-... |..| .-....++..++...+.++++++.|+....-. .-....++..+...|.+..++
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 77777766554432 2222 11334456778888889999999998876531 112344678888999999999
Q ss_pred hHHHHHHHHHHHc----CCCccHHHH-----HHHHHHHHhcCChHHHHHHHHHHHhc----CCC-chHHHHHHHHHHHhh
Q 036461 147 DEASRLLELMIQI----GVRPNAFVY-----NTLMDGFCLTGRVNRAEELFVSMESM----GCK-HNVFSYSILINGYCK 212 (369)
Q Consensus 147 ~~a~~~~~~~~~~----~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~ 212 (369)
++|.-+.....+. ++..-..-| ..+.-++...|....|.+..++..+. |-. .-......+...|..
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 9988776665543 222111112 23344667778888888887776443 311 123345567788899
Q ss_pred cCChHHHHHHHHHHHh
Q 036461 213 NKEIEGALSLYSEMLS 228 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~ 228 (369)
.|+.+.|+.-|++...
T Consensus 259 ~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 259 RGDLERAFRRYEQAMG 274 (518)
T ss_pred cccHhHHHHHHHHHHH
Confidence 9999999888887654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.17 Score=40.75 Aligned_cols=156 Identities=10% Similarity=-0.023 Sum_probs=111.0
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhhcCCh
Q 036461 140 LCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM---GCKHNVFSYSILINGYCKNKEI 216 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 216 (369)
.-..|+..+|...++++++. .|.|...+...=.+|...|+...-...++++... ++|-.+.....+.-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34568888888899998885 4668888888889999999999999999888644 2233334444555666789999
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 217 EGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH---GVAADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
++|.+.-++..+.+.. |...-.++...+...+++.++.+....-... +.-.-...|-...-.+...+.++.|+.+|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999998886533 6666667777777889999998876654321 10011122223344566779999999999
Q ss_pred HHHH
Q 036461 294 RTLR 297 (369)
Q Consensus 294 ~~~~ 297 (369)
++-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.39 Score=39.50 Aligned_cols=109 Identities=19% Similarity=0.179 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLC 316 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (369)
+.+..+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-..+... +-++.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666777888888888766552 36888899999999999999987776432 224577888899999
Q ss_pred cCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 317 KSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 317 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
+.|...+|..+..++.. ..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~~~----------~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIPD----------EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCCh----------HHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998888321 3456678888999988776433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.65 Score=41.83 Aligned_cols=287 Identities=14% Similarity=0.122 Sum_probs=161.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 036461 65 TIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDW--NEAKCLFIEMMDQGVQPNVVSFNVIMNELCK 142 (369)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (369)
.++.-+...+.+..|+++-..+...-.. +...|.....-+.+..+. +++.+.+++=.+... .....|..+.+-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHh
Confidence 3455666678888888887666433112 256666666666665322 223333332222222 245577888888888
Q ss_pred CCChhHHHHHHHHHHHcCCC----ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----------CCchHHHHHHHH
Q 036461 143 NGKMDEASRLLELMIQIGVR----PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG-----------CKHNVFSYSILI 207 (369)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~ 207 (369)
.|+.+.|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++-.+...- .+.....|..++
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~ 599 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFM 599 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 99999998887643222111 112223445566677788777777766654321 111222222222
Q ss_pred H--------HHhhcCChHHHHHHHH--HHHh----CCCCCcHHhHHHHHHHHHhccc----------HHHHHHHHHHHHH
Q 036461 208 N--------GYCKNKEIEGALSLYS--EMLS----KGIKPDVVIYNTLFIGLFEIHQ----------VERAFKLFDEMQR 263 (369)
Q Consensus 208 ~--------~~~~~~~~~~a~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~ 263 (369)
+ .+.+.++-.++...|. .... .+..|+ .......+.+... ..+-+++.+.+..
T Consensus 600 r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~ 676 (829)
T KOG2280|consen 600 RHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLED 676 (829)
T ss_pred Hhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2 0111112222221111 1000 112222 2223333433322 1122222223322
Q ss_pred -cCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHH
Q 036461 264 -HGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVT 342 (369)
Q Consensus 264 -~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 342 (369)
.+.....-+.+.-+.-+...|+..+|.++-.+.. -||...|..-+.++...+++++-+++-+.... +.-
T Consensus 677 q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIG 746 (829)
T KOG2280|consen 677 QFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIG 746 (829)
T ss_pred HhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCC
Confidence 2323334456666777888999999998888776 68999999999999999999998887766542 445
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHh
Q 036461 343 YNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
|.-...+|.+.|+.++|.+++-+.
T Consensus 747 y~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 747 YLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred chhHHHHHHhcccHHHHhhhhhcc
Confidence 666788999999999999987654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.17 Score=34.66 Aligned_cols=92 Identities=21% Similarity=0.098 Sum_probs=55.3
Q ss_pred HHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhCC
Q 036461 68 DGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVV---SFNVIMNELCKNG 144 (369)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 144 (369)
-++...|+.+.|++.|.+.+.- .|.....||.-..++.-+|+.++|+.-+++..+..-..+.. .|.--...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3455667777777777776654 34466677777777777777777777777666542121222 2222333455566
Q ss_pred ChhHHHHHHHHHHHcC
Q 036461 145 KMDEASRLLELMIQIG 160 (369)
Q Consensus 145 ~~~~a~~~~~~~~~~~ 160 (369)
+-+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6677766666666655
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.23 Score=35.97 Aligned_cols=139 Identities=11% Similarity=0.095 Sum_probs=94.5
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc-hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
+-..|..-+. +.+.++.++|+.-|..+.+.+ ...- +-............|+...|...|+++-.....|-+.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg------~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~ 130 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTG------YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG 130 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcC------CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh
Confidence 3345555444 567788899999999988876 1211 3344556677788899999999999987653333332
Q ss_pred -hHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc
Q 036461 97 -TYN--SLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRP 163 (369)
Q Consensus 97 -~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (369)
-.- .-...+...|.+++...-.+.+-..+.+.....-..|.-+-.+.|++..|.+.|..+......|
T Consensus 131 rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 131 RDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 111 1223456788899988888887766555555556677777788999999999998887643333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.15 Score=43.90 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=104.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHH
Q 036461 26 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF 105 (369)
Q Consensus 26 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (369)
.....-.++++.+.++.+.-.-.. .-.....+.++.-+.+.|-.+.|+++-.. +. .-....
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-------~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLA 328 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-------NIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELA 328 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-------G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-------cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHH
Confidence 345556788888777775211100 11245578888888899999999887533 22 234556
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHH
Q 036461 106 CYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAE 185 (369)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (369)
.+.|+++.|.++.++. .+...|..|.......|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 6789999998776543 3677999999999999999999999987643 456667788889998888
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 186 ELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
++.+.....| . ++....++.-.|+.++..+++.+.
T Consensus 394 kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 394 KLAKIAEERG-D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 8888877765 2 344445556678888888776543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.33 Score=37.72 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-CCCCCHHhHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-NINPNVVTYN 99 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 99 (369)
.|-.-+....+.|++++|.+.|+.+..+.+. .+-...+...++.++.+.++++.|+..+++.... +-.||. .|.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~----s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~ 110 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPF----SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYA 110 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHH
Confidence 4444555677899999999999999987632 1234567788889999999999999999998775 223333 344
Q ss_pred HHHHHHH
Q 036461 100 SLIHGFC 106 (369)
Q Consensus 100 ~l~~~~~ 106 (369)
..|.+.+
T Consensus 111 ~YlkgLs 117 (254)
T COG4105 111 YYLKGLS 117 (254)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.38 Score=37.48 Aligned_cols=225 Identities=20% Similarity=0.092 Sum_probs=147.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCChHHHH
Q 036461 108 ANDWNEAKCLFIEMMDQGVQP-NVVSFNVIMNELCKNGKMDEASRLLELMIQI-GVRPNAFVYNTLMDGFCLTGRVNRAE 185 (369)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (369)
.+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 456666666666666543221 2456677777888888888888888877652 22445566677777778888888888
Q ss_pred HHHHHHHhcCCCchHHHHHHHHH-HHhhcCChHHHHHHHHHHHhCCC--CCcHHhHHHHHHHHHhcccHHHHHHHHHHHH
Q 036461 186 ELFVSMESMGCKHNVFSYSILIN-GYCKNKEIEGALSLYSEMLSKGI--KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQ 262 (369)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (369)
+.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888887654222 222223333 67788888888888888865321 1233334444444666778888888888877
Q ss_pred HcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 263 RHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
..........+..+...+...++++.+...+....... +.....+..+...+...+..+.+...+.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 75321135667777778888888888888888887653 222444455555555666788888888777664
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.36 Score=37.17 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
...|..-..+|...+++++|...+.+..+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34566667778888899999888877764
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.7 Score=39.68 Aligned_cols=76 Identities=11% Similarity=0.161 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCch-HHHHHHHH
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIGVR-PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN-VFSYSILI 207 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 207 (369)
+-..+..++.+.|+.++|++.++++.+.... .+......|+.++...+.+.++..++.+..+...+.+ ...|+..+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3345667777888888898888888765322 2344667788888888888888888888765443322 33455443
|
The molecular function of this protein is uncertain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.2 Score=42.43 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=23.6
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 036461 80 KELFLKMKDENINPNVVTYNSLIHGFCYAN--DWNEAKCLFIEMMD 123 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 123 (369)
.+.+.....+ ..|+ .....++..|.+.+ .++.++....+...
T Consensus 777 c~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 777 CDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3334443333 2334 34446777787776 66677776666654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.1 Score=41.48 Aligned_cols=79 Identities=13% Similarity=0.141 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChhhHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMD-----QGVQPNVVSFN 134 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 134 (369)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4566667777777777777777777776663 45777777777777777777777777776654 36666666665
Q ss_pred HHHHH
Q 036461 135 VIMNE 139 (369)
Q Consensus 135 ~l~~~ 139 (369)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.6 Score=42.62 Aligned_cols=178 Identities=17% Similarity=0.190 Sum_probs=113.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMIQIGVRPN--AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGY 210 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (369)
...-+..+.+...++-|+.+-+. .+..++ .........-+.+.|++++|...+-+....- .|+ .++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHHh
Confidence 44556666777777777766543 222222 2233444556677889999888887665431 222 334555
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhCCCHHHH
Q 036461 211 CKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGV-AADTWAYRTFIDGLCKNGYIVEA 289 (369)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a 289 (369)
........-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+... .|. ..| ....+..+.+.+-.++|
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEA 482 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHH
Confidence 6666777778888888888776 55556778889999998888777765544 221 112 34556667777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 290 VELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
..+-.+... +......+ +-..|++++|++.+..+.
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 766655432 23333333 456788999999988874
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.48 Score=35.80 Aligned_cols=177 Identities=17% Similarity=0.030 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 147 DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
.-|.--|.+..... |.-+.+||.+.-.+...|+++.|.+.|+...+.+...+-...|.-+ ++.-.|++.-|.+-+.+.
T Consensus 82 ~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 82 ALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHH
Confidence 33333444444432 2235567777777777777777777777777664222222222222 233456777777666666
Q ss_pred HhCCCC-CcHHhHHHHHHHHHhcccHHHHHHHH-HHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-
Q 036461 227 LSKGIK-PDVVIYNTLFIGLFEIHQVERAFKLF-DEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYEL- 303 (369)
Q Consensus 227 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~- 303 (369)
-+.+.. |-...|--+. -+.-++.+|..-+ ++.... |..-|...+..+. .|.+.+ ..+++++.... ..
T Consensus 160 YQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~a-~~n 229 (297)
T COG4785 160 YQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKISE-ETLMERLKADA-TDN 229 (297)
T ss_pred HhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-HhhccH-HHHHHHHHhhc-cch
Confidence 554322 1111111111 1233455554333 333322 2223322222221 122111 12223322211 11
Q ss_pred ------CHHHHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 036461 304 ------DIRAYNCLIDGLCKSGRLKIAWELFRSLPRGV 335 (369)
Q Consensus 304 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 335 (369)
-..+|..+..-+...|+.++|..+|+-.+..+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 13466667777778888888888888776653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.48 Score=43.21 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc--hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN--TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
....-+..+.+..-++-|+.+-..-.. .++ .........-+.+.|++++|...|-+.+.. +.|.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~---------d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s---- 401 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL---------DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS---- 401 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC---------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH----
Confidence 344556667777777777776554221 122 223334445556788999988888776654 2322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT 178 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (369)
.++.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++..++.+... .|.- ..-....+..+.+.
T Consensus 402 -~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~s 476 (933)
T KOG2114|consen 402 -EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKS 476 (933)
T ss_pred -HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHh
Confidence 2445556666777777788888888766 55566778888888888777666655443 2211 00122334444445
Q ss_pred CChHHHHHHHH
Q 036461 179 GRVNRAEELFV 189 (369)
Q Consensus 179 ~~~~~a~~~~~ 189 (369)
+-.++|.-+-.
T Consensus 477 nyl~~a~~LA~ 487 (933)
T KOG2114|consen 477 NYLDEAELLAT 487 (933)
T ss_pred ChHHHHHHHHH
Confidence 55555544433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.66 Score=36.07 Aligned_cols=225 Identities=18% Similarity=0.066 Sum_probs=148.1
Q ss_pred CChHHHHHHHHHhHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhCCChhHHHH
Q 036461 74 GFVDKAKELFLKMKDENIN-PNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ-GVQPNVVSFNVIMNELCKNGKMDEASR 151 (369)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (369)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 5556666666666554221 12566777777888888888888888887652 223455566667777777888888888
Q ss_pred HHHHHHHcCCCccHHHHHHHHH-HHHhcCChHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 152 LLELMIQIGVRPNAFVYNTLMD-GFCLTGRVNRAEELFVSMESMGC--KHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
.+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 888887754333 222222333 67888999999999888855321 12333344444446677888888888888887
Q ss_pred CCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 229 KGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
.........+..+...+...++++.+...+......... ....+......+...+..+.+...+.......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 632213566777777888888888888888888775321 23444444445556677888888888877653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.81 Score=37.04 Aligned_cols=164 Identities=15% Similarity=0.109 Sum_probs=97.8
Q ss_pred HHhcCChHHHHHHHHHhHhCCCCCCHHhHHH-------HHHHHHhcC-CHHHHHHHHHHHHhc--------CCCCCh---
Q 036461 70 LCKEGFVDKAKELFLKMKDENINPNVVTYNS-------LIHGFCYAN-DWNEAKCLFIEMMDQ--------GVQPNV--- 130 (369)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 130 (369)
..+.|+.+.|..++.+........++..... ........+ +++.|..++++..+. ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 3568999999999999876421223222222 222333455 899998888776543 112222
Q ss_pred --hhHHHHHHHHHhCCChh---HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHH
Q 036461 131 --VSFNVIMNELCKNGKMD---EASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSI 205 (369)
Q Consensus 131 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (369)
.++..++.++...+..+ +|..+++.+.... +-.+.++..-++.+.+.++.+.+.+.+.+|...- ......+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 35566777888777654 4556666665442 2235566666777888999999999999998763 213334444
Q ss_pred HHHHHhh--cCChHHHHHHHHHHHhCCCCCcH
Q 036461 206 LINGYCK--NKEIEGALSLYSEMLSKGIKPDV 235 (369)
Q Consensus 206 l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 235 (369)
.+..+.. ......+...+..+....+.|..
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 4444421 23345566666666655444444
|
It is also involved in sporulation []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.14 Score=40.72 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=47.5
Q ss_pred HhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 036461 236 VIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRI-----LKYELDIRAYNC 310 (369)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 310 (369)
.++..++..+...++++.+...++++.... +.+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345556666666666777777777666653 44666677777777777777777777666653 355555555444
Q ss_pred HHH
Q 036461 311 LID 313 (369)
Q Consensus 311 l~~ 313 (369)
+..
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 333
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.78 E-value=1 Score=38.16 Aligned_cols=115 Identities=24% Similarity=0.206 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHH----HHHHH---hcccHHHHHHHHHHHHHcCCCcCHH----HHHHHHH--HHHh
Q 036461 216 IEGALSLYSEMLSKGIKPDVVIYNTL----FIGLF---EIHQVERAFKLFDEMQRHGVAADTW----AYRTFID--GLCK 282 (369)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~--~~~~ 282 (369)
-++|+.+++.+.+-.. -|...-+.+ =..|. ....+.+-..+-+-+.+.|++|-.. .-+.+.. -+..
T Consensus 396 dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 6677777777766421 122222222 12222 2234555555556666677766432 2333332 3456
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 283 NGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 283 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
.|++.++.-.-.-+.+. .|++.+|..++-++....++++|+.++..+..
T Consensus 475 qgey~kc~~ys~WL~~i--aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKI--APSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred cccHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 78999887665555544 78999999999999999999999999998754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.5 Score=33.55 Aligned_cols=43 Identities=14% Similarity=0.076 Sum_probs=20.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhc
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKE 73 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 73 (369)
.++..+.+.+.+......++.+...+ +.++...+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-------~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-------SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-------ccchhHHHHHHHHHHHH
Confidence 34444444455555555555555443 23444555555555443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.48 Score=33.32 Aligned_cols=82 Identities=11% Similarity=0.065 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP---NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI 136 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (369)
+..+..-.....+.|+++.|.+.|+.+..+ .|. ....-..++.+|.+.+++++|...+++.++..+.....-|...
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 334444555667789999999999999876 222 3455667888999999999999999999887544333445555
Q ss_pred HHHHHh
Q 036461 137 MNELCK 142 (369)
Q Consensus 137 ~~~~~~ 142 (369)
+.+++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.031 Score=28.67 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCchHHHHHHHHH
Q 036461 343 YNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 55666777777777777777766
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.55 Score=33.35 Aligned_cols=126 Identities=13% Similarity=0.054 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 036461 63 YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK 142 (369)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (369)
...++..+...+.+.....+++.+...+ +.+...++.++..|++.+ ..+....+.. . .+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 4456666666778888888888887765 357777888888887653 3344444442 1 233444557777777
Q ss_pred CCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 036461 143 NGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT-GRVNRAEELFVSMESMGCKHNVFSYSILINGYC 211 (369)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (369)
.+-++++..++..+.. ... .+..+... ++++.|.+++.+. .++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~~----Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FKD----AIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HHH----HHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777777777766522 111 22223333 6677777766642 24455666665544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.44 Score=35.43 Aligned_cols=60 Identities=17% Similarity=0.332 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPN--VVTYNSLIHGFCYANDWNEAKCLFIEM 121 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 121 (369)
.+..+...|.+.|+.+.|++.|.++.+....+. ...+..+++.....+++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344455555555555555555555444322221 223344444445555555555544444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.25 Score=38.85 Aligned_cols=105 Identities=18% Similarity=0.294 Sum_probs=56.6
Q ss_pred CccHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHH
Q 036461 162 RPNAFVYNTLMDGFCL-----TGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV 236 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (369)
+.|...|...+..+.. .+.++-....++.|.+.|+..|..+|..|+..+-+.. +.|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-H
Confidence 3455666666655543 2456666666677777777777777777776654321 1111 1
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
.+......|- .+-+-++.++++|..+|+.||.++-..++.++.+.+-
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111111 1223456666666666666666666666666655543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.024 Score=28.65 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=27.8
Q ss_pred HHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHH
Q 036461 7 FMKLRVFGCEPNVFTYNTLINGLCRTGHTIVAL 39 (369)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 39 (369)
|++.++.. |-++.+|+.+...+...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56677775 778999999999999999999986
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.024 Score=28.67 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=24.5
Q ss_pred HHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 42 FEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
|++.++.+ |.|+.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~-------P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-------PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-------CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555 567888999999999999888875
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.58 Score=32.24 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCc
Q 036461 269 DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVL 336 (369)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 336 (369)
+.......+..+...|.-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.++++++-+.|+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555556666666666666666665433 56666666667777777777777766666666554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.053 Score=27.82 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHc
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMAN 47 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 47 (369)
+|..|...|.+.|++++|+++|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578899999999999999999999553
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.84 Score=33.19 Aligned_cols=139 Identities=14% Similarity=0.065 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHH-HHH--
Q 036461 199 NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV-IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTW-AYR-- 274 (369)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~-- 274 (369)
+...|..-+. +.+.+..++|+.-|.++.+.|...-+. ............|+...|...|+++-.....|-.. -..
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3445555444 456788899999999999876542221 11223344567889999999999987643333222 111
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCccc
Q 036461 275 TFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIA 338 (369)
Q Consensus 275 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 338 (369)
.-...+...|.++......+-+...+-+.-...-..|.-+-.+.|++..|.+.|.++......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1223456788899888888877765544556666778888889999999999999887643333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.44 Score=35.43 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=42.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQP--NVVSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
..+..+...|.+.|+.+.|.+.|.++.+....+ -...+..+++.....+++..+...+.++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456677777888888888888888776653222 2334556667777777777777776665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.88 Score=32.75 Aligned_cols=51 Identities=18% Similarity=0.004 Sum_probs=24.0
Q ss_pred HhcCChhHHHHHHHHHHcCCCCCCcccccc-hhhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 30 CRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 30 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
.+.++.+++..+++.+.... |. +..-..-...+...|++.+|+.+|+++..
T Consensus 21 l~~~~~~D~e~lL~ALrvLR--------P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR--------PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34455555555555555433 22 22222223334455555555555555544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.6 Score=35.57 Aligned_cols=138 Identities=14% Similarity=0.159 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh--cC----ChHHHHHHHHHHHhCCCC---CcHHhHHHHHHHHHhccc-
Q 036461 181 VNRAEELFVSMESMGCKHNVFSYSILINGYCK--NK----EIEGALSLYSEMLSKGIK---PDVVIYNTLFIGLFEIHQ- 250 (369)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~- 250 (369)
+++...+++.+.+.|+..+..++.+....... .. ....|..+|+.|.+..+. ++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777776665543333322 22 345677888888887532 233444444333 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 036461 251 ---VERAFKLFDEMQRHGVAADTW--AYRTFIDGLCKNGY--IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGR 320 (369)
Q Consensus 251 ---~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (369)
.+.++.+|+.+.+.|...+.. ....++..+..... ...+..+++.+.+.++++....|..++-...-.+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~ 232 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDP 232 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCc
Confidence 345667777777766654332 23333332222222 44677788888888877777777666544433333
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.21 Score=32.04 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIID 68 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (369)
++.+.++.+...+.-|++....+.+++|.+.+++..|+++|+-+...- ..+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-------~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-------GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-------cCchhhHHHHHH
Confidence 356677788888889999999999999999999999999999887543 234445655553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.95 E-value=2 Score=36.50 Aligned_cols=127 Identities=15% Similarity=0.231 Sum_probs=56.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHH-HHHHHHH
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMIQIG-VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSY-SILINGY 210 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~ 210 (369)
|...+....+..-.+.|..+|-++.+.+ +.+++..+++++..+ ..|+..-|..+|+.-... -||...| ...+..+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 3344444444444555555555555554 334444444444433 234555555555544333 1222222 2333344
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCc--HHhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 036461 211 CKNKEIEGALSLYSEMLSKGIKPD--VVIYNTLFIGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (369)
..-++-+.|..+|+..+.+ +..+ ...|..++..-..-|+...+..+-+++.+
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 4455555555555543332 1111 23444555554555555555544444444
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.88 E-value=3 Score=38.16 Aligned_cols=222 Identities=13% Similarity=0.177 Sum_probs=91.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhh---
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG-CKHNVFSYSILINGYCK--- 212 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 212 (369)
...+.-.|.++.|.+.+-. ..+...+.+++...+..|.-.+-.+... ..+.... -.+...-+..++..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3444556777777766655 1122344555444443332221111111 2221111 01112456677777765
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHhHHHHH-HHHHhcccHHHHH-----------HHHHH---HHHcCCCcCHH---HHH
Q 036461 213 NKEIEGALSLYSEMLSKGIKPDVVIYNTLF-IGLFEIHQVERAF-----------KLFDE---MQRHGVAADTW---AYR 274 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-----------~~~~~---~~~~~~~~~~~---~~~ 274 (369)
..++..|..++--+....-+.....+...+ ......++++.-+ .++++ +... ..++.. ...
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~-~~~~~~~~~i~~ 418 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKF-DDDEDFLREIIE 418 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT--SSSSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCC-CCcHHHHHHHHH
Confidence 567888888887776643221222222222 1222222222111 11111 1111 011222 223
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCC-----------HHHHHHHHHhcccCCc------
Q 036461 275 TFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDG-LCKSGR-----------LKIAWELFRSLPRGVL------ 336 (369)
Q Consensus 275 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~-----------~~~a~~~~~~~~~~~~------ 336 (369)
....-+...|++++|..+|.-+.+.+ .-....+.++.- ...... ...|..+.+.....+.
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~ 496 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVS 496 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhcc
Confidence 34445667888888888887665321 112233333332 222222 3445555554443221
Q ss_pred ccCHHHHHHHHH-----HHHhcCchHHHHHHHHHh
Q 036461 337 IADVVTYNIMIH-----ALCADGKMDKARDLFLDM 366 (369)
Q Consensus 337 ~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m 366 (369)
.....|+..|+. -+.+.|++++|++.++++
T Consensus 497 ~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 497 RKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 113445555554 357889999999999875
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.81 E-value=4 Score=39.27 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=43.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhc
Q 036461 276 FIDGLCKNGYIVEAVELFRTLRILKYELDIR--AYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCAD 353 (369)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 353 (369)
.+.+|..+|+|.+|+.+..++... -+.. +-..|+.-+...++.-+|-++..+.... | .-.+..+++.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhH
Confidence 445556666666666666555421 1111 1245666777778877777777776553 1 1223345555
Q ss_pred CchHHHHHHH
Q 036461 354 GKMDKARDLF 363 (369)
Q Consensus 354 g~~~~A~~~~ 363 (369)
..|++|+++.
T Consensus 1040 ~~~~eAlrva 1049 (1265)
T KOG1920|consen 1040 KEWEEALRVA 1049 (1265)
T ss_pred hHHHHHHHHH
Confidence 5677776654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.73 E-value=6.3 Score=41.12 Aligned_cols=322 Identities=12% Similarity=0.043 Sum_probs=160.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIH 103 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (369)
.+..+-.+.+.+.+|+..++.-.....+ -......+..+...|...++++...-+...... +...+ .-+.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~----~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKE----KETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccch----hHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHH
Confidence 4455666788899999998884211100 011233445555589999999988877764222 22222 2344
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHH-HHHHHHHhcCChH
Q 036461 104 GFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYN-TLMDGFCLTGRVN 182 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~ 182 (369)
.....|+|..|...|+++.+.+ ++...+++.++......|.+...+...+-..... .+....++ .-+.+.-+.++++
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchh
Confidence 5567899999999999999874 3346677878877777888888777666554432 22333333 2334446677777
Q ss_pred HHHHHHHHHHhcCCCchHHHHHH--HHHHHhh--cCChHHHHHHHHHHHhCCCCC---------cHHhHHHHHHHHHhcc
Q 036461 183 RAEELFVSMESMGCKHNVFSYSI--LINGYCK--NKEIEGALSLYSEMLSKGIKP---------DVVIYNTLFIGLFEIH 249 (369)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~--~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~ 249 (369)
....... ... ...|.. +.....+ ..+.-.-.+..+.+.+.-+.| -...|..++....-..
T Consensus 1536 ~~e~~l~--~~n-----~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1536 LLESYLS--DRN-----IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhhhhhh--ccc-----ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH
Confidence 7776655 111 111211 2222222 112111112222222211110 0122333332221111
Q ss_pred cHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCC-----CCCHHHHHHHHHHHHcCCCHH
Q 036461 250 QVERAFKLFDEMQR-HGVAADTWAYRTFIDGLCKNGYIVEAVELFRTL-RILKY-----ELDIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 250 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-----~~~~~~~~~l~~~~~~~g~~~ 322 (369)
.+.-.+.+..... .....+...|..-+..-....+..+-+--+++. ..... .--..+|...++.....|.++
T Consensus 1609 -l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1609 -LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred -HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 1111111100000 000111111222222111111122222222221 11111 123467777888888888888
Q ss_pred HHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 323 IAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
.|...+-.+.+.+ -+..+.-.+..+...|+...|+.++++..+
T Consensus 1688 ~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 8888777776654 234555666777888888888888887653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.61 Score=36.81 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=63.4
Q ss_pred CCChhhHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHH
Q 036461 127 QPNVVSFNVIMNELCK-----NGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVF 201 (369)
Q Consensus 127 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 201 (369)
.-|..+|...+..+.. .+..+-....++.|.+.|+..|..+|+.|++.+-+-.-. |. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-H
Confidence 4467778777777654 356777778889999999999999999999876443211 11 1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc
Q 036461 202 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ 250 (369)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (369)
.+....-.|-+ +-+-+++++++|...|+.||..+-..|+.++.+.+-
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111111111 223355566666666666666666666666555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.2 Score=32.47 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHH
Q 036461 5 ALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLF 42 (369)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 42 (369)
+.++.+.+.|++|+...+..+++.+.+.|++..-..++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44555566667777777777777777777655444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.63 E-value=2.7 Score=36.37 Aligned_cols=164 Identities=15% Similarity=0.095 Sum_probs=90.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC
Q 036461 66 IIDGLCKEGFVDKAKELFLKMKDENINPNV-VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG 144 (369)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (369)
++.-.-+..+.+.-++.-.+..+. .|+. ..|..|. --......++.+++++..+.|- ..+..-- .....|
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE----~~lg~s~-~~~~~g 244 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLA--EEEASTIVEAEELLRQAVKAGE----ASLGKSQ-FLQHHG 244 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHH----Hhhchhh-hhhccc
Confidence 333344455555555555555542 3333 2222221 1234457788888887765431 1111000 000111
Q ss_pred ChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhhcCChHHHHHHH
Q 036461 145 KMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG-CKHNVFSYSILINGYCKNKEIEGALSLY 223 (369)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (369)
..++........+-..+-..+..++-+.|+.++|++.++++.+.. ......+...++.++...+.+.++..++
T Consensus 245 ------~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 245 ------HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred ------chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 111222222223334444567778889999999999999998653 1234557788999999999999999999
Q ss_pred HHHHhCCCCC-cHHhHHHHHHH
Q 036461 224 SEMLSKGIKP-DVVIYNTLFIG 244 (369)
Q Consensus 224 ~~~~~~~~~~-~~~~~~~l~~~ 244 (369)
.+..+...+. -...|+..+-.
T Consensus 319 ~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 319 AKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHhccccCCchHHHHHHHHHHH
Confidence 9986543222 23355554433
|
The molecular function of this protein is uncertain. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.32 Score=31.60 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHH
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIID 68 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (369)
..+-++.+...++-|++....+.+++|.+.+++..|+++|+-+...- .+....|..+++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-------~~~~~~Y~~~lq 87 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-------GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------TT-TTHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-------cChHHHHHHHHH
Confidence 44556677777888999999999999999999999999999988764 233336666554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.31 E-value=1.8 Score=32.95 Aligned_cols=30 Identities=23% Similarity=0.071 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 270 TWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
.++|-.+...+...|+.++|..+|+-.+..
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 346666677777777777777777766643
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=3.2 Score=35.69 Aligned_cols=128 Identities=12% Similarity=0.091 Sum_probs=83.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHH
Q 036461 25 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHG 104 (369)
Q Consensus 25 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (369)
-|......|+...|-+-+....++. +.++.............|+++.+.+.+...... +.....+...+++.
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~-------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~ 366 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQ-------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRS 366 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhC-------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHh
Confidence 3445556677776655544444443 344444444555566778899888888776553 33455667778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 036461 105 FCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGV 161 (369)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (369)
..+.++++.|..+-.-|....++ +...........-..|-++++.-.|++....+.
T Consensus 367 ~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 367 LHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred hhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 88888999999888888776554 444444434444456777888888888876653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.10 E-value=1.3 Score=30.62 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 301 (369)
.....+......|.-+...+++..+.+. -.+++..+..+..+|.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444555566666777777777666543 245666777777777777777777777777766653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.93 E-value=1.8 Score=31.63 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=67.5
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
+.++.+...+++|+...+..++..+.+.|++.....++ +.++-+|.......+-.+ .+....+.++--.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH-
Confidence 44555566677777777777777777777755444333 334444444333322211 22333344443333332
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 161 VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
=...+..+++.+...|++-+|.++.+...... ......++++..+.+|...-..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00123445566666777777777766643221 11123345555555555554444444443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.73 Score=29.70 Aligned_cols=45 Identities=4% Similarity=0.071 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036461 253 RAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (369)
++.+-++.+...+..|++......+++|.+.+++..|.++++-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.2 Score=24.95 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 341 VTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 341 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
..|..+..++...|++++|++.|++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345666677777777777777776654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.22 Score=24.92 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 341 VTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 341 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
.+|..+..++...|++++|+..|++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 356666677777777777777776654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=4.2 Score=35.06 Aligned_cols=124 Identities=9% Similarity=0.022 Sum_probs=79.2
Q ss_pred HHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhH
Q 036461 69 GLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDE 148 (369)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (369)
-....|+.-.|-+-+.....+ .+.++.............|+++.+...+...... +.....+...+++.....|++++
T Consensus 298 k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 334456665554443333332 2223333334445566788888888888766543 33455677788888888899999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036461 149 ASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG 195 (369)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (369)
|...-..|+...+. ++..........-..|-++++.-.++++...+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99888888876654 44444444444556677888888888887654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.8 Score=30.74 Aligned_cols=52 Identities=15% Similarity=0.064 Sum_probs=31.0
Q ss_pred HhcCChhHHHHHHHHHHcCCCCCCcccccc-hhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 30 CRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 30 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
...++++++..+++.+.... |+ ...-..-...+...|++++|+++|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLr--------P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR--------PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC--------CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 34677777777777776644 32 222222334455667777777777777665
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.19 Score=25.16 Aligned_cols=30 Identities=20% Similarity=0.208 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
.+|..+..++...|++++|+..|++..+.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578899999999999999999999999855
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=5.9 Score=36.49 Aligned_cols=310 Identities=10% Similarity=0.024 Sum_probs=146.5
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh--cCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK--EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 106 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (369)
..+.|++..+.++...+... +. ..|......... ...+++....+++-.. .+.....-...+..+.
T Consensus 43 a~~~g~~~~~~~~~~~l~d~--------pL--~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La 110 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDY--------PL--YPYLEYRQLTQDLMNQPAVQVTNFIRANPT--LPPARSLQSRFVNELA 110 (644)
T ss_pred HHHCCCHHHHHHHHHhccCC--------Cc--HhHHHHHHHHhccccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHH
Confidence 45667777777766665321 11 222222222222 2245554444444332 1222233334445556
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHH-
Q 036461 107 YANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAE- 185 (369)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~- 185 (369)
+.+++......+.. .+.+...-...+.+....|+.++|......+-..| ...+..+..++..+.+.|......
T Consensus 111 ~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~ 184 (644)
T PRK11619 111 RREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAY 184 (644)
T ss_pred HccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHH
Confidence 67777776663311 23344444566777777888777776666665555 234555666666666555543322
Q ss_pred -HHHHHHHhcCCCchHHHHHHHHHHHhh------------cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH--HHhccc
Q 036461 186 -ELFVSMESMGCKHNVFSYSILINGYCK------------NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIG--LFEIHQ 250 (369)
Q Consensus 186 -~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~ 250 (369)
+-++.+...+ +...-..+...... ..+...+...+.. +.|+...-..++.+ -....+
T Consensus 185 w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d 256 (644)
T PRK11619 185 LERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQD 256 (644)
T ss_pred HHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhC
Confidence 1122222221 11111111111100 0111111111111 11222111111111 123455
Q ss_pred HHHHHHHHHHHHHcC-CCcC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 036461 251 VERAFKLFDEMQRHG-VAAD--TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 327 (369)
.+.|..++....... ..+. ..+...+.......+...++...++..... ..+......-+......++++.+...
T Consensus 257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 677888887764432 2111 112333333333332245566665554322 23444555555566677888888888
Q ss_pred HHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 328 FRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
+..|.... .-...-..-+.+++...|+.++|...|+++.
T Consensus 335 i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 335 LARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 87775532 2233444456677777888888888887753
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.82 Score=36.72 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=71.8
Q ss_pred cCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcH
Q 036461 159 IGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG---CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV 235 (369)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 235 (369)
.|.+....+...++..-....+++.+...+-+++... ..++... ...++.+. .-++++++.++..=++.|+.||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 3555556666666666666778888888888776431 1111111 12233332 34677888888888888999999
Q ss_pred HhHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 236 VIYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
.+++.++..+.+.+++..|.++...|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999998888888777654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.2 Score=24.94 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
..|..+...+...|++++|++.|++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 568889999999999999999999998855
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.40 E-value=5.9 Score=35.87 Aligned_cols=180 Identities=13% Similarity=0.067 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHH-----HHhcCChhHHHHHHHHHHcC---CCCCCcccccchhhHHHHHHHHHhc
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLING-----LCRTGHTIVALNLFEEMANG---NGEFGVVCKPNTVTYTTIIDGLCKE 73 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ 73 (369)
+|.++++...+.| +......+..+ .....+++.|+..|+.+... .. ..-++.....+..+|.+.
T Consensus 230 ~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a-----~~~~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 230 EAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA-----TKGLPPAQYGLGRLYLQG 301 (552)
T ss_pred HHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH-----hhcCCccccHHHHHHhcC
Confidence 4677777777766 33333333322 33557888899988888661 00 011344566677777664
Q ss_pred C-----ChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----C
Q 036461 74 G-----FVDKAKELFLKMKDENINPNVVTYNSLIHGFCY-ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK----N 143 (369)
Q Consensus 74 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 143 (369)
. +.+.|..++.+.-+.|.+ +.......+..... ..+...|.++|......|. ...+..+..+|.. .
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcC
Confidence 3 566788888887776533 44433222222222 2356788888888877763 2333333333322 2
Q ss_pred CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036461 144 GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG 195 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (369)
.+...|..++.+..+.| .|...--...+..+.. +.++.+.-.+..+...+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 46777788888777776 2222222222233333 66666665555555444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.29 E-value=2.6 Score=31.47 Aligned_cols=89 Identities=9% Similarity=-0.042 Sum_probs=50.9
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCcCHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036461 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAY-----RTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLC 316 (369)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (369)
...+...+++++|...++..... |....+ ..+.+.....|.+++|+..++.....+ ........-.+++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHH
Confidence 34556667777777777666543 122222 233445566677777777776655432 12333344455667
Q ss_pred cCCCHHHHHHHHHhcccCC
Q 036461 317 KSGRLKIAWELFRSLPRGV 335 (369)
Q Consensus 317 ~~g~~~~a~~~~~~~~~~~ 335 (369)
..|+-++|...|++....+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777766653
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.18 E-value=4 Score=33.34 Aligned_cols=130 Identities=14% Similarity=0.201 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh--cC----CHHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHhCCC-
Q 036461 76 VDKAKELFLKMKDENINPNVVTYNSLIHGFCY--AN----DWNEAKCLFIEMMDQGV---QPNVVSFNVIMNELCKNGK- 145 (369)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 145 (369)
+++.+.+++.+.+.|...+..+|.+....... .. ....|..+|+.|++..+ .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34555666677777776666555442222222 11 24456667777766421 1222233333322 2222
Q ss_pred ---hhHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCchHHHHHHHH
Q 036461 146 ---MDEASRLLELMIQIGVRPNA--FVYNTLMDGFCLTGR--VNRAEELFVSMESMGCKHNVFSYSILI 207 (369)
Q Consensus 146 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 207 (369)
.+.+..+|+.+.+.|...+- .....++........ ..++.++++.+.+.++++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 23445555555555544322 112222221111111 234555555555555555544444433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.16 E-value=2.2 Score=30.28 Aligned_cols=53 Identities=15% Similarity=-0.043 Sum_probs=36.4
Q ss_pred HhcccHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 246 FEIHQVERAFKLFDEMQRHGVAADT-WAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
...++++.+..++..+.-. .|+. ..-..-...+...|++++|.++++.+.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3577888888888887764 3332 223333455678888999999988887653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.13 E-value=6.5 Score=35.60 Aligned_cols=245 Identities=13% Similarity=0.065 Sum_probs=139.5
Q ss_pred hHHHHHHHHHhHhCCCCCCHHhHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------cCCCCChhhHHHHHHHHHhC
Q 036461 76 VDKAKELFLKMKDENINPNVVTYNSLIHG-----FCYANDWNEAKCLFIEMMD-------QGVQPNVVSFNVIMNELCKN 143 (369)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 143 (369)
...|.+.++...+.| +...-..+..+ +....+.+.|+.+|+.... .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567889998888775 33333333333 3355789999999999876 44 333566677777774
Q ss_pred C-----ChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHh--hcCC
Q 036461 144 G-----KMDEASRLLELMIQIGVRPNAFVYNTLMDGFCL-TGRVNRAEELFVSMESMGCKHNVFSYSILINGYC--KNKE 215 (369)
Q Consensus 144 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 215 (369)
. +.+.|..++...-+.| .|+.......+..... ..+...|.++|......|. +....+..++.... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCC
Confidence 3 5677999999998887 3455444333322222 2467899999999998873 22222222221111 2457
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHH-HHHH---Hh----CCCHH
Q 036461 216 IEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTF-IDGL---CK----NGYIV 287 (369)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~---~~----~g~~~ 287 (369)
...|..++.+..+.| .|....-...+..+.. +.++.+...+..+.+.+... ..+-... +... .. ..+..
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccccccchh
Confidence 889999999999987 3332222223333333 67777766666666554321 1111111 1111 11 12455
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHHhcccC
Q 036461 288 EAVELFRTLRILKYELDIRAYNCLIDGLCKS----GRLKIAWELFRSLPRG 334 (369)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~ 334 (369)
.+...+.+....| +......+...|... .+++.|...+......
T Consensus 457 ~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 457 RAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred HHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 5666666655443 444444554444332 2355666666555544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.27 Score=25.89 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 342 TYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
+++.+..+|...|++++|+.++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4555566666666666666665554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.9 Score=34.07 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhH--hCCCCCCHHhHHHHHHHHHhcCCHHH
Q 036461 36 IVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMK--DENINPNVVTYNSLIHGFCYANDWNE 113 (369)
Q Consensus 36 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (369)
+.|...|-.+...+ .-.++.....|+..|.+...-..-.-+++.+. ..+-.+|+..+.+|+..+.+.++++.
T Consensus 123 ~~A~~~fL~~E~~~------~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 123 QEALRRFLQLEGTP------ELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred HHHHHHHHHHcCCC------CCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 45666666666555 23455666666666665443333333333332 22235677777777777777777766
Q ss_pred HH
Q 036461 114 AK 115 (369)
Q Consensus 114 a~ 115 (369)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.5 Score=32.95 Aligned_cols=80 Identities=11% Similarity=0.064 Sum_probs=57.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc---CCCccHHHHHHHHHHHHhcCC
Q 036461 104 GFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI---GVRPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 180 (369)
.+.+.|+ +.|.+.|-++...+.--++.....+ ..|....+.+++..++....+. +-.+|+..+..|+..+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3444444 6677888787776544444444444 4455578889999999888765 336788999999999999999
Q ss_pred hHHHH
Q 036461 181 VNRAE 185 (369)
Q Consensus 181 ~~~a~ 185 (369)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 98875
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.6 Score=32.65 Aligned_cols=91 Identities=20% Similarity=0.154 Sum_probs=51.3
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCcH----HhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC
Q 036461 208 NGYCKNKEIEGALSLYSEMLSKGIKPDV----VIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (369)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (369)
.-+...|++++|..-|...+..-+.... ..|..-..++.+.+.++.|+.-....++.+.. ....+..-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3456677777777777777765322111 22333344556666677666666666654321 222233334466666
Q ss_pred CCHHHHHHHHHHHHHc
Q 036461 284 GYIVEAVELFRTLRIL 299 (369)
Q Consensus 284 g~~~~a~~~~~~~~~~ 299 (369)
..+++|+.-|+.+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6777777777777655
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.97 E-value=4.7 Score=33.52 Aligned_cols=107 Identities=7% Similarity=-0.056 Sum_probs=73.6
Q ss_pred HHHHHHcCCCcCHhHHHHHHHHHHhcCC------------hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC
Q 036461 7 FMKLRVFGCEPNVFTYNTLINGLCRTGH------------TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG 74 (369)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 74 (369)
|++.++.. |-|+.+|..++..--..-. .+.-+.+++++.+.+ +.+...+..++..+.+..
T Consensus 8 l~~~v~~~-P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-------p~~~~L~l~~l~~~~~~~ 79 (321)
T PF08424_consen 8 LNRRVREN-PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-------PDSERLLLGYLEEGEKVW 79 (321)
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhC
Confidence 34444443 6789999999876544322 345677888888876 566778888888888888
Q ss_pred ChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 036461 75 FVDKAKELFLKMKDENINPNVVTYNSLIHGFCY---ANDWNEAKCLFIEMM 122 (369)
Q Consensus 75 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 122 (369)
+.++..+.++++.... +-+...|...+..... .-.++....+|.+.+
T Consensus 80 ~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 80 DSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 8888888899988762 3367777777765544 224556666665544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.91 E-value=1.8 Score=32.44 Aligned_cols=90 Identities=17% Similarity=0.080 Sum_probs=68.8
Q ss_pred HHHHhcccHHHHHHHHHHHHHcCCCcCHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 036461 243 IGLFEIHQVERAFKLFDEMQRHGVAADTW-----AYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCK 317 (369)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (369)
.-+...|++++|..-|...++. +++.+. .|..-..++.+.+.++.|+.-..+.++.+ +.....+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 4467889999999999998886 333322 34444557788899999999988888776 4455555566778999
Q ss_pred CCCHHHHHHHHHhcccC
Q 036461 318 SGRLKIAWELFRSLPRG 334 (369)
Q Consensus 318 ~g~~~~a~~~~~~~~~~ 334 (369)
...+++|+.-|+++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 99999999999999886
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.86 E-value=1.8 Score=28.35 Aligned_cols=47 Identities=4% Similarity=0.008 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 253 RAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
+..+-++.+...++.|++......+++|.+.+++..|.++++-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555555556666677777777777777777777777777766643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.21 Score=23.26 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCchHHHHHHHH
Q 036461 343 YNIMIHALCADGKMDKARDLFL 364 (369)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~ 364 (369)
...+..++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445566666666666666654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.75 E-value=2.8 Score=30.31 Aligned_cols=51 Identities=12% Similarity=0.018 Sum_probs=22.9
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCcHHhH-HHHHHHHHhcccHHHHHHHHHHHHH
Q 036461 211 CKNKEIEGALSLYSEMLSKGIKPDVVIY-NTLFIGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (369)
...++.+++..++..+.-.. |..... ..-...+...|++.+|..+++++.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34455555555555555432 221111 1112233445555555555555544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.68 E-value=8.8 Score=35.93 Aligned_cols=227 Identities=15% Similarity=0.087 Sum_probs=119.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChh-------hHHHHH-HHHHhCCChhHHHHHHHHHHHcC----CCccHHHHHHH
Q 036461 104 GFCYANDWNEAKCLFIEMMDQGVQPNVV-------SFNVIM-NELCKNGKMDEASRLLELMIQIG----VRPNAFVYNTL 171 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l 171 (369)
......++.+|..++.++...-..|+.. .+..+- ......|+++.+.++.+.....= ..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3445788999999998886652232222 222222 23345788899998888776541 22345556667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCchHHH---HHHH--HHHHhhcCCh--HHHHHHHHHHHhCC--CC----CcHHhH
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGCKHNVFS---YSIL--INGYCKNKEI--EGALSLYSEMLSKG--IK----PDVVIY 238 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~~--~~a~~~~~~~~~~~--~~----~~~~~~ 238 (369)
..+..-.|++++|..+..+..+..-..++.. |..+ ...+...|+. .+....+....... -. +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7788888999999998887765422223332 2222 2334556632 22333333333221 01 112334
Q ss_pred HHHHHHHHhc-ccHHHHHHHHHHHHHcCCCcCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHH
Q 036461 239 NTLFIGLFEI-HQVERAFKLFDEMQRHGVAADTWA--YRTFIDGLCKNGYIVEAVELFRTLRILKYELD----IRAYNCL 311 (369)
Q Consensus 239 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l 311 (369)
..+..++.+. +...++..-+.-.......|-... +..++......|+.++|...++++......+. ..+-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4444454441 111222222222222211121112 22567778889999999999988876543332 1121222
Q ss_pred HH--HHHcCCCHHHHHHHHHh
Q 036461 312 ID--GLCKSGRLKIAWELFRS 330 (369)
Q Consensus 312 ~~--~~~~~g~~~~a~~~~~~ 330 (369)
+. .....|+...+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 23456777777666655
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.54 E-value=1.5 Score=33.40 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC--CCCCCHHhHH
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE--NINPNVVTYN 99 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 99 (369)
.+..++.+.+.+...+|+...+.-.+.. |.|...-..++..++-.|++++|..-++-.-.. ...+...+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr 76 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYR 76 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-------CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 4455677778888888888887777665 556677777888888888888887777665442 1223445565
Q ss_pred HHHHH
Q 036461 100 SLIHG 104 (369)
Q Consensus 100 ~l~~~ 104 (369)
.++.+
T Consensus 77 ~lir~ 81 (273)
T COG4455 77 HLIRC 81 (273)
T ss_pred HHHHH
Confidence 55544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.21 Score=24.67 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 343 YNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
+..+..++.+.|++++|.+.|+++.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34456677777788888877777654
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=92.29 E-value=5 Score=32.19 Aligned_cols=137 Identities=11% Similarity=0.104 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHh-CCCCCcHHhHHHHHHHHHh-cc-cHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHhCCCHHHHHH
Q 036461 216 IEGALSLYSEMLS-KGIKPDVVIYNTLFIGLFE-IH-QVERAFKLFDEMQR-HGVAADTWAYRTFIDGLCKNGYIVEAVE 291 (369)
Q Consensus 216 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 291 (369)
+.+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+.. .+-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555552222 1233466666666666554 11 12222233333332 2345778888899999999999999999
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHh-----cccCCcccCHHHHHHHHHHHHh
Q 036461 292 LFRTLRIL-KYELDIRAYNCLIDGLCKSGRLKIAWELFRS-----LPRGVLIADVVTYNIMIHALCA 352 (369)
Q Consensus 292 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~ 352 (369)
+|+..... +...|...|...+......|+..-...+..+ +.+.++..+...-..+-+.+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 99887755 4566888999999999999998888887765 3456666666666555555443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.2 Score=35.80 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=52.4
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGR 320 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (369)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..++...+++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4555556666777777777777655455566777777777777666666666651 111333455666777777
Q ss_pred HHHHHHHHHhccc
Q 036461 321 LKIAWELFRSLPR 333 (369)
Q Consensus 321 ~~~a~~~~~~~~~ 333 (369)
+++|.-++.++-.
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 7777777766543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.09 E-value=2.3 Score=34.36 Aligned_cols=101 Identities=12% Similarity=-0.006 Sum_probs=61.7
Q ss_pred CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC---CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036461 232 KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG---VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAY 308 (369)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 308 (369)
.....+...++.......+++.++..+-.+...- ..|+. +....++.+ -.-++++++.++..=++.|+.||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3344455555555555667777777776665421 11111 122233333 234566777777777777888888888
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 309 NCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 309 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
+.+++.+.+.+++.+|.++.-.|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888887777776666543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.00 E-value=7.9 Score=33.82 Aligned_cols=181 Identities=14% Similarity=0.169 Sum_probs=122.0
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHH
Q 036461 92 NPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTL 171 (369)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (369)
+.|.....+++..+.....+.-...+..++..-| -+...|..++.+|... ..+.-..+|+++.+..+. |+..-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4466777788888988888999999999998764 3667788888888887 667788888888887543 44444445
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCc-----hHHHHHHHHHHHhhcCChHHHHHHHHHHHhC-CCCCcHHhHHHHHHHH
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGCKH-----NVFSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPDVVIYNTLFIGL 245 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 245 (369)
...|. .++.+.+...|.++...-++. -...|..+...- ..+.+..+.+..++... |...-...+.-+-.-|
T Consensus 139 a~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 54444 488888888888876543221 122444444321 34667777777777654 3333445555666778
Q ss_pred HhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 036461 246 FEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGL 280 (369)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 280 (369)
....++++|++++..+.+++ ..|...-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 88889999999999888775 33555555555443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.27 Score=24.25 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
++..+..++.+.|++++|.+.|+++....
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45567788899999999999999999865
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.61 Score=23.16 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 342 TYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
+|..+...|...|++++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666777777777777766643
|
... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.21 E-value=8.2 Score=32.48 Aligned_cols=66 Identities=12% Similarity=0.043 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC---cHHhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 036461 198 HNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP---DVVIYNTLFIGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (369)
....++..++..+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567777777888888888888888777643211 223333344555567777777777776665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.73 Score=24.17 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=14.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMM 122 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 122 (369)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.04 E-value=2.8 Score=30.86 Aligned_cols=95 Identities=17% Similarity=0.084 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc---cc-------HHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhCC
Q 036461 216 IEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEI---HQ-------VERAFKLFDEMQRHGVAAD-TWAYRTFIDGLCKNG 284 (369)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-------~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 284 (369)
++.|.+.++.....++ .|...++.-..++... .+ +++|+.-|++.+.. .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~nP-~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP-LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 4555555555444432 2555444444444332 22 23333344444443 344 356666666665433
Q ss_pred ----C-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036461 285 ----Y-------IVEAVELFRTLRILKYELDIRAYNCLIDGL 315 (369)
Q Consensus 285 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (369)
+ +++|...|+++... .|+...|+.-+...
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 2 44555555555544 57777777666654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.54 E-value=15 Score=34.48 Aligned_cols=191 Identities=16% Similarity=0.107 Sum_probs=104.9
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCchH-------HHHHHH-HHHHhhcCChHHHHHHHHHHHhC----CCCCcHHhHHHH
Q 036461 174 GFCLTGRVNRAEELFVSMESMGCKHNV-------FSYSIL-INGYCKNKEIEGALSLYSEMLSK----GIKPDVVIYNTL 241 (369)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 241 (369)
......++++|..++.++...-..|+. ..++.+ .......|+++.|.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 345568889999888887654212211 123322 23345678999999988887764 123345566677
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCcC---HHHHHHH--HHHHHhCCCH--HHHHHHHHHHHHc---CCC---CCHHHH
Q 036461 242 FIGLFEIHQVERAFKLFDEMQRHGVAAD---TWAYRTF--IDGLCKNGYI--VEAVELFRTLRIL---KYE---LDIRAY 308 (369)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l--~~~~~~~g~~--~~a~~~~~~~~~~---~~~---~~~~~~ 308 (369)
..+..-.|++++|..+..+..+..-.-+ ...+..+ ...+...|+. .+....+...... ..+ +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7788889999999988877655311122 2223333 3345667732 3333333333221 101 122344
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhccc----CCcccCHHHH--HHHHHHHHhcCchHHHHHHHHHhh
Q 036461 309 NCLIDGLCKSGRLKIAWELFRSLPR----GVLIADVVTY--NIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 309 ~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
..++.++.+ .+.+..-...-.+ ....|-.... ..|+.+....|+.++|...++++.
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 445555554 3333333332222 2122222222 367778888999999998888775
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=90.08 E-value=5.6 Score=31.67 Aligned_cols=123 Identities=14% Similarity=0.062 Sum_probs=66.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhC-----CCCCCH--------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh
Q 036461 66 IIDGLCKEGFVDKAKELFLKMKDE-----NINPNV--------VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVS 132 (369)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (369)
-.+.+.-..|+..|++..++-.+. +...+. .....=|++++..++|.+++.+.-+.-+..-+.....
T Consensus 41 Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkI 120 (309)
T PF07163_consen 41 AADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI 120 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH
Confidence 334444456777777766665432 011111 1112235677777777777776665544322223344
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHH-----hcCChHHHHHHH
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFC-----LTGRVNRAEELF 188 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~ 188 (369)
...-+-.|.+.+.+..+.++-..-.+..-.-+..-|..++..|. -.|.+++|+++.
T Consensus 121 leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 121 LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 45555667777777777777766665422223333555554443 357777777766
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.72 E-value=3.2 Score=30.58 Aligned_cols=108 Identities=19% Similarity=0.102 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHh---cCC-------hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCR---TGH-------TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLC 71 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 71 (369)
.|++-.+.-...+ |.|...++.-..++.. ..+ +++|+.-|++....+ |....++..+..++.
T Consensus 9 ~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-------P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 9 HARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-------PNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--------TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHH
Confidence 3555555544444 5666665554444433 333 344555666666644 233567777777766
Q ss_pred hcC----C-------hHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036461 72 KEG----F-------VDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQG 125 (369)
Q Consensus 72 ~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (369)
..+ + +++|.+.|++..+ ..|+..+|+.-+.... +|-.+..++.+.+
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 543 2 4455555555555 3678888887777653 3555555555543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.63 E-value=1.1 Score=22.18 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
+|..+...+...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555556666666666666665544
|
... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.75 Score=24.82 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=10.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 036461 276 FIDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~ 297 (369)
+..+|...|+.+.|..+++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3344444444444444444444
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.48 E-value=3.7 Score=31.34 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY--ELDIRAYNCLIDG 314 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 314 (369)
|.+..++.+.+.+...+++...+.-++.. +.|...-..+++.++-.|++++|..-++-...... .+-...|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556677788899999999988877764 44666777889999999999999988877765531 2334566666654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.24 E-value=3.4 Score=33.87 Aligned_cols=90 Identities=14% Similarity=0.001 Sum_probs=58.6
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 106 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (369)
..|.++|++++|++.|.+..... +-|+.++..-..+|.+...+..|..=.......+ ..-...|..-+.+-.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARE 176 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 45778888888888888887755 3478888888888888888887777666655431 112233444444444
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 036461 107 YANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~ 124 (369)
..|...+|.+-++..+..
T Consensus 177 ~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHhhHHHHHHhHHHHHhh
Confidence 455666666666666553
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.17 E-value=0.22 Score=35.56 Aligned_cols=130 Identities=12% Similarity=0.144 Sum_probs=89.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC
Q 036461 205 ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG 284 (369)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (369)
.++..+.+.+.+.....+++.+...+...+....+.++..|.+.++.++...+++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 456778888999999999999998766667888999999999998878888877621 1123346777888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCch
Q 036461 285 YIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKM 356 (369)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 356 (369)
.++++..++.++....-- +..+...++++.|.++..+. +++..|..++..|...+..
T Consensus 85 l~~~a~~Ly~~~~~~~~a---------l~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEA---------LEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SHHHHHHHHHCCTTHTTC---------SSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTCT
T ss_pred hHHHHHHHHHHcccHHHH---------HHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCcc
Confidence 888888877765432211 11134455666666444333 3578899898888776653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.79 E-value=16 Score=32.12 Aligned_cols=182 Identities=12% Similarity=0.101 Sum_probs=126.7
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHH
Q 036461 127 QPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSIL 206 (369)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (369)
+.|......++..+.....+.-+..+..++...| .+...+..++++|... ..++-..+++++.+..+ +......-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHH
Confidence 4466677888888988888888999999999876 4677888999999888 67788889998887753 33334433
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCC-----cHHhHHHHHHHHHhcccHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHH
Q 036461 207 INGYCKNKEIEGALSLYSEMLSKGIKP-----DVVIYNTLFIGLFEIHQVERAFKLFDEMQRH-GVAADTWAYRTFIDGL 280 (369)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 280 (369)
+..+...++...+..+|.++..+-++. -...|..+... -..+.+....+...+... |...-...+..+-..|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 344444588999999999988752221 11234333322 145677777777777643 3333445566666788
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036461 281 CKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLC 316 (369)
Q Consensus 281 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (369)
....++.+|++++..+.+++ ..|..+-..++..+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 89999999999999988776 456655556655443
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=88.60 E-value=1.5 Score=27.08 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=18.5
Q ss_pred cCCCHHHHHHHHHhcccCCcccC--HHHHHHHHHHHHhcCchHHHHH
Q 036461 317 KSGRLKIAWELFRSLPRGVLIAD--VVTYNIMIHALCADGKMDKARD 361 (369)
Q Consensus 317 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~ 361 (369)
...+.++|+..|++..+.-..+. -.++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443311111 1133344444555555555444
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.56 E-value=11 Score=30.25 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
+....+.|...|.+.+|.++.+..+..+ +.+...+..++..+...|+--.+.+-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4445566777777777777777777664 456666777777777777755555555554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.55 E-value=18 Score=32.48 Aligned_cols=151 Identities=17% Similarity=0.094 Sum_probs=93.5
Q ss_pred HhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcC
Q 036461 30 CRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN 109 (369)
Q Consensus 30 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (369)
.-.|+++.|..++..+. ....+.+++-+.++|-.++|+++- +|+.. -.....+.|
T Consensus 597 vmrrd~~~a~~vLp~I~-------------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lg 651 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLG 651 (794)
T ss_pred hhhccccccccccccCc-------------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcC
Confidence 34567777666544432 234556666667777777776542 22221 123345678
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 036461 110 DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFV 189 (369)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (369)
+++.|.++..+.. +..-|..|..+....+++..|.+.+..... |..|+-.+...|+.+....+-.
T Consensus 652 rl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 652 RLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred cHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 8888887766543 556688888888888888888888876654 3345566667777766666666
Q ss_pred HHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 190 SMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
...+.| ..+... .+|...|+++++.+++..-
T Consensus 717 ~~~~~g-~~N~AF-----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 717 LAKKQG-KNNLAF-----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhc-ccchHH-----HHHHHcCCHHHHHHHHHhc
Confidence 666655 333322 2455678888887776544
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=88.54 E-value=11 Score=30.10 Aligned_cols=120 Identities=9% Similarity=-0.030 Sum_probs=79.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC-----CCCCh--------hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHH
Q 036461 104 GFCYANDWNEAKCLFIEMMDQG-----VQPNV--------VSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNT 170 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~-----~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (369)
...-..++..|+...++-.+.= ...+. .....-|++++..+++.++....-+..+.--+..+.+...
T Consensus 44 ~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleL 123 (309)
T PF07163_consen 44 LLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL 123 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH
Confidence 3444567777777776654420 11111 1223447788899999998877766655433334556666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh-----cCChHHHHHHH
Q 036461 171 LMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK-----NKEIEGALSLY 223 (369)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~ 223 (369)
-|-.|.+.+.+..+.++-.......-.-+...|..+++.|.. .|.+++|.++.
T Consensus 124 CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 124 CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 777889999999999998888765333444557777776654 68999998876
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.47 E-value=3.7 Score=28.10 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
-.+.++.+...++-|++.....-++++.+-+++..|+.+|+-+...-
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 34566777788889999999999999999999999999999988654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.45 E-value=10 Score=29.55 Aligned_cols=119 Identities=13% Similarity=0.064 Sum_probs=72.4
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCcH-HhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhCCCH
Q 036461 209 GYCKNKEIEGALSLYSEMLSKGIKPDV-VIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT-WAYRTFIDGLCKNGYI 286 (369)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 286 (369)
-|.....++.|+..|.+.+.. .|+. .-|..=+.++.+..+++.+..--.+.++. .|+. .....+..+......+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 355556788888888777775 4555 34455666777788888887777776664 3443 3344556677778888
Q ss_pred HHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 036461 287 VEAVELFRTLRI----LKYELDIRAYNCLIDGLCKSGRLKIAWELFRSL 331 (369)
Q Consensus 287 ~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 331 (369)
++|+..+.+... ..+++-......|..+=-..=...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888887743 233334445555554433333334444544443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.38 E-value=21 Score=32.99 Aligned_cols=182 Identities=16% Similarity=0.076 Sum_probs=108.6
Q ss_pred HHHHHHHHHH-cCCCcCHh--HHHHHHHHHH-hcCChhHHHHHHHHHHcCCCCCCcccccc-----hhhHHHHHHHHHhc
Q 036461 3 AAALFMKLRV-FGCEPNVF--TYNTLINGLC-RTGHTIVALNLFEEMANGNGEFGVVCKPN-----TVTYTTIIDGLCKE 73 (369)
Q Consensus 3 A~~~~~~~~~-~g~~~~~~--~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~ 73 (369)
|++.++-+.+ ..++|..+ ++..+...+. ...+++.|...+++...... +++ -..-..++..+.+.
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~------~~~~~d~k~~~~~ll~~i~~~~ 113 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE------RHRLTDLKFRCQFLLARIYFKT 113 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHHHHHHhc
Confidence 5677777773 33444433 4556666666 67899999999998865541 222 12234566777777
Q ss_pred CChHHHHHHHHHhHhC--C--CCCCHHhHHHH-HHHHHhcCCHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHH--hC
Q 036461 74 GFVDKAKELFLKMKDE--N--INPNVVTYNSL-IHGFCYANDWNEAKCLFIEMMDQG---VQPNVVSFNVIMNELC--KN 143 (369)
Q Consensus 74 ~~~~~a~~~~~~~~~~--~--~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~ 143 (369)
+... |...+++.++. + ..+-...+..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.
T Consensus 114 ~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~ 192 (608)
T PF10345_consen 114 NPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRR 192 (608)
T ss_pred CHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC
Confidence 6555 99998887653 1 11222333333 333334479999999998886542 2233334444444433 44
Q ss_pred CChhHHHHHHHHHHHcC---------CCccHHHHHHHHHHH--HhcCChHHHHHHHHHH
Q 036461 144 GKMDEASRLLELMIQIG---------VRPNAFVYNTLMDGF--CLTGRVNRAEELFVSM 191 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 191 (369)
+..+.+.+.++.+.... ..|...+|..+++.+ ...|+++.+...++++
T Consensus 193 ~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 193 GSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 65677777777764321 134566777777655 4567777777666655
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.36 E-value=6 Score=32.54 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=50.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc
Q 036461 171 LMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ 250 (369)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (369)
-.+.|.+.|.+++|+.+|....... +.++..+..-..+|.+...+..|..-....+..+- .-...|+.-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhh
Confidence 3456677777777777777766553 33666666666777777777666655555444310 011223333333333444
Q ss_pred HHHHHHHHHHHHH
Q 036461 251 VERAFKLFDEMQR 263 (369)
Q Consensus 251 ~~~a~~~~~~~~~ 263 (369)
..+|.+-++..++
T Consensus 181 ~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 181 NMEAKKDCETVLA 193 (536)
T ss_pred HHHHHHhHHHHHh
Confidence 5555555555444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.04 E-value=13 Score=33.35 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH
Q 036461 166 FVYNTLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
.-|..|.++....+++..|.+.|...
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34444444444445555444444443
|
|
| >cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat | Back alignment and domain information |
|---|
Probab=87.23 E-value=5.7 Score=25.23 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
++-++++.+.+.|+ -+......+-.+-...|+.+.|.+++..+. ++ +..|..++.++...|.-+-|.+
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----------~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----------EGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----------CcHHHHHHHHHHHcCchhhhhc
Confidence 35678888888874 344444444444446799999999999988 65 4678888999888887665543
|
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=87.22 E-value=14 Score=29.77 Aligned_cols=115 Identities=11% Similarity=0.058 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHhHh-CCCCCCHHhHHHHHHHHHh-cC-CHHHHHHHHHHHHh-cCCCCChhhHHHHHHHHHhCCChhHHH
Q 036461 75 FVDKAKELFLKMKD-ENINPNVVTYNSLIHGFCY-AN-DWNEAKCLFIEMMD-QGVQPNVVSFNVIMNELCKNGKMDEAS 150 (369)
Q Consensus 75 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (369)
.+.+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+.. .+..++..+...++..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35566666663211 1234466666666665554 21 11112222222221 123455556666666677777777777
Q ss_pred HHHHHHHHc-CCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 036461 151 RLLELMIQI-GVRPNAFVYNTLMDGFCLTGRVNRAEELFV 189 (369)
Q Consensus 151 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (369)
++++..... +...|...|..+++.....|+..-..++.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 666665544 344466666666776666676665555544
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.06 E-value=2.6 Score=22.80 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=6.6
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 036461 104 GFCYANDWNEAKCLFIEM 121 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~ 121 (369)
+|...|+.+.|..+++++
T Consensus 8 ayie~Gd~e~Ar~lL~ev 25 (44)
T TIGR03504 8 AYIEMGDLEGARELLEEV 25 (44)
T ss_pred HHHHcCChHHHHHHHHHH
Confidence 333333333333333333
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.95 E-value=13 Score=29.04 Aligned_cols=81 Identities=16% Similarity=0.059 Sum_probs=46.4
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccch-hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH-hHHHHHHHHHhc
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNT-VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV-TYNSLIHGFCYA 108 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 108 (369)
...++..|+.-|.+.+..+ |++ .-|..-+.++.+..+++.+..--.+.++. .||.. ....+.......
T Consensus 22 ~~k~y~~ai~~y~raI~~n--------P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICIN--------PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred chhhhchHHHHHHHHHhcC--------CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhh
Confidence 3345666666666666644 443 44555666666666676666655555553 33432 233444555566
Q ss_pred CCHHHHHHHHHHH
Q 036461 109 NDWNEAKCLFIEM 121 (369)
Q Consensus 109 ~~~~~a~~~~~~~ 121 (369)
..+++|+..+.+.
T Consensus 92 ~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 92 KGYDEAIKVLQRA 104 (284)
T ss_pred ccccHHHHHHHHH
Confidence 6667776666665
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.82 E-value=11 Score=28.28 Aligned_cols=93 Identities=13% Similarity=0.067 Sum_probs=63.3
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCc--HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC
Q 036461 206 LINGYCKNKEIEGALSLYSEMLSKGIKPD--VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (369)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (369)
+...++..+++++|...++.........+ ..+--.|.+.....|.+|.|..+++...+.+. .......-...+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 45567778888888888887775411111 11223455667788888999888887766432 233344556788888
Q ss_pred CCHHHHHHHHHHHHHcC
Q 036461 284 GYIVEAVELFRTLRILK 300 (369)
Q Consensus 284 g~~~~a~~~~~~~~~~~ 300 (369)
|+-++|+.-|+......
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999998888764
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.68 E-value=14 Score=29.32 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=126.1
Q ss_pred CCCCCCHHhHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhCCChhHHHHHHHHHHHc---CC
Q 036461 89 ENINPNVVTYNSLIHG-FCYANDWNEAKCLFIEMMDQGVQPNVV---SFNVIMNELCKNGKMDEASRLLELMIQI---GV 161 (369)
Q Consensus 89 ~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 161 (369)
.+..||+..=|..-.. -.+..++++|+.-|++..+.....-.. ...-++....+.+++++....|.+++.. .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3455666544332211 123457999999999988753232333 3345678889999999999999888642 11
Q ss_pred --CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCchHH----HHHHHHHHHhhcCChHHHHHHHHHHHhCCCC--
Q 036461 162 --RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM-GCKHNVF----SYSILINGYCKNKEIEGALSLYSEMLSKGIK-- 232 (369)
Q Consensus 162 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 232 (369)
.-+....+.++.....+.+.+--..+++.-... .-..+.. +-..+...|...+++.+..++++++......
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 124456677777777777777666666543321 0011111 2355777888888888888888888765211
Q ss_pred --Cc-------HHhHHHHHHHHHhcccHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHH-----HhCCCHHHHHHH-HHHH
Q 036461 233 --PD-------VVIYNTLFIGLFEIHQVERAFKLFDEMQRHG-VAADTWAYRTFIDGL-----CKNGYIVEAVEL-FRTL 296 (369)
Q Consensus 233 --~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~g~~~~a~~~-~~~~ 296 (369)
.| ...|..-++.|....+-.....+++..+... .-|.+... .+++-| .+.|.+++|..- |+..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHH
Confidence 11 2456666777877777778888888765421 23444433 344433 467788887654 4444
Q ss_pred H
Q 036461 297 R 297 (369)
Q Consensus 297 ~ 297 (369)
.
T Consensus 259 K 259 (440)
T KOG1464|consen 259 K 259 (440)
T ss_pred h
Confidence 3
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.35 E-value=7.9 Score=26.62 Aligned_cols=45 Identities=7% Similarity=0.062 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036461 254 AFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
..+-++.+...++.|++......+++|.+.+|+..|.++++-++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444555555666666666666666666666666666666653
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.08 E-value=19 Score=30.05 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHHhhcCC------------hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 197 KHNVFSYSILINGYCKNKE------------IEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
|.|+.+|-.++..--..-. .+.-+.+++++++.++ .+......++..+.+..+.+...+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5667777776654322211 2334455555555532 24444555555555555555556666665554
Q ss_pred CCCcCHHHHHHHHHHHHh---CCCHHHHHHHHHHH
Q 036461 265 GVAADTWAYRTFIDGLCK---NGYIVEAVELFRTL 296 (369)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~ 296 (369)
. +-+...|...+..... .-.++....+|.+.
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 2 2244455555544332 22344444444433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.43 E-value=21 Score=30.03 Aligned_cols=67 Identities=12% Similarity=-0.027 Sum_probs=51.5
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKH---NVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
.....++..+...+.+.|.++.|...+..+...+... .+.+...-+...-..|+..+|+..++....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456678888999999999999999999988754111 344445556667778999999999988887
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.16 E-value=16 Score=28.46 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=9.3
Q ss_pred cCChHHHHHHHHHhH
Q 036461 73 EGFVDKAKELFLKMK 87 (369)
Q Consensus 73 ~~~~~~a~~~~~~~~ 87 (369)
.+.+++|-++|.+.-
T Consensus 27 ~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 27 SNKYEEAAELYERAA 41 (288)
T ss_pred CcchHHHHHHHHHHH
Confidence 346777777766543
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.99 E-value=18 Score=29.04 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=15.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHH
Q 036461 204 SILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
..++..+.+.|.+.+|+.+...+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 34566777778888777665444
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.92 E-value=19 Score=29.23 Aligned_cols=234 Identities=13% Similarity=0.027 Sum_probs=130.7
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCH----HHHHHHHHHHHhcCCCCChhhH
Q 036461 58 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDW----NEAKCLFIEMMDQGVQPNVVSF 133 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 133 (369)
+|.......+..+...|. +.+...+..+... +|...-...+.++.+.|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455566666666666664 3344444444433 2555545555666666653 4566667666433 3455555
Q ss_pred HHHHHHHHhCCCh-----hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 036461 134 NVIMNELCKNGKM-----DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILIN 208 (369)
Q Consensus 134 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 208 (369)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..+...+-.+.+. ++..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5555555554321 223333333332 2355566666777777776 4555555555543 33444444555
Q ss_pred HHhhcC-ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHH
Q 036461 209 GYCKNK-EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIV 287 (369)
Q Consensus 209 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 287 (369)
++.+.+ +...+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 555442 24456666666664 34666666777777777774 4555555555432 2 234667777788875
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036461 288 EAVELFRTLRILKYELDIRAYNCLIDGLC 316 (369)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (369)
+|...+..+... .+|..+-...+.+|.
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 677777777754 457777766666654
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=84.45 E-value=4.8 Score=24.99 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=27.2
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHH
Q 036461 282 KNGYIVEAVELFRTLRILKYELD--IRAYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 327 (369)
...+.++|+..|+...+....+. -.++..++.+|+..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777776665432221 23455666677777777666554
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=84.15 E-value=34 Score=31.33 Aligned_cols=75 Identities=11% Similarity=-0.018 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036461 221 SLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (369)
...+.++.+-+..+......++..|.+.|-.+.+..+.+.+-..-. ...-|...+..+.++|+......+...+.
T Consensus 391 ~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 391 ERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333344332333444555666677777777777776665543311 23345555666666776666665555554
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=84.09 E-value=31 Score=31.58 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 036461 167 VYNTLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
....++..|.+.|-.+.|.++.+.+
T Consensus 407 ~~~k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 407 DAEKLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344445555555555555554444
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.84 E-value=29 Score=30.39 Aligned_cols=279 Identities=10% Similarity=-0.038 Sum_probs=140.3
Q ss_pred HhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHH--HHHHHHHHHhcCCCC-----------ChhhHHHHH
Q 036461 71 CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNE--AKCLFIEMMDQGVQP-----------NVVSFNVIM 137 (369)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~-----------~~~~~~~l~ 137 (369)
...+.++..++.+..+...|.......++.-...|.+.|.... -.+-+..+...-..| ....+....
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~a 107 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFA 107 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhh
Confidence 3467899999999999988877667778877778888775432 222232222110011 111122222
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCcc-----HHHHHHHHHHHHhcCChHHHHHHHHHH---HhcC--------------
Q 036461 138 NELCKNGKMDEASRLLELMIQIGVRPN-----AFVYNTLMDGFCLTGRVNRAEELFVSM---ESMG-------------- 195 (369)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~-------------- 195 (369)
-.|.....+..|+++.......- .|- ..........+......++|+.++.-+ ...+
T Consensus 108 Vi~yh~~~~g~a~~~~~~lv~r~-e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~ 186 (696)
T KOG2471|consen 108 VIFYHHEENGSAMQLSSNLVSRT-ESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNL 186 (696)
T ss_pred eeeeeHhhcchHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhh
Confidence 23444455566666555444321 110 111122233455555666666655443 2211
Q ss_pred ---CCchHHHH------------HHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHH-HHHHHhcccHHHHHHHHH
Q 036461 196 ---CKHNVFSY------------SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL-FIGLFEIHQVERAFKLFD 259 (369)
Q Consensus 196 ---~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~ 259 (369)
.+|....- ..-+.++.+..+...+..-.+..... .-+...+..| -+.+.-.|++.+|.+++.
T Consensus 187 ~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~--a~~s~~~l~LKsq~eY~~gn~~kA~KlL~ 264 (696)
T KOG2471|consen 187 LKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI--AQDSSMALLLKSQLEYAHGNHPKAMKLLL 264 (696)
T ss_pred cccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh--cCCCcHHHHHHHHHHHHhcchHHHHHHHH
Confidence 01111110 11112222222222222221111111 1111111111 233456789999988876
Q ss_pred HHH---HcCCCcCHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHH-------cCCCCCH----------HHHHHHHHH
Q 036461 260 EMQ---RHGVAADTW-----AYRTFIDGLCKNGYIVEAVELFRTLRI-------LKYELDI----------RAYNCLIDG 314 (369)
Q Consensus 260 ~~~---~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~----------~~~~~l~~~ 314 (369)
..- ..|...++. .++.+.....+.|.+..+..+|.++.+ .|++|.. .......-.
T Consensus 265 ~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~ 344 (696)
T KOG2471|consen 265 VSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLL 344 (696)
T ss_pred hcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHH
Confidence 532 122112221 234555555666777777777766653 3433321 222334556
Q ss_pred HHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhc
Q 036461 315 LCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCAD 353 (369)
Q Consensus 315 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 353 (369)
|.+.|++-.|.+.|.+.... +..++..|..+..+|...
T Consensus 345 ~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 345 YLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 88999999999999988764 456889999999998643
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=83.33 E-value=13 Score=26.03 Aligned_cols=68 Identities=9% Similarity=0.005 Sum_probs=44.1
Q ss_pred CcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 267 AADTWAYRTFIDGLCKNG---YIVEAVELFRTLRILKYE-LDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 267 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.++..+--.+..++.+.. +..+.+.+++.+.+...+ -.......|.-++.+.|+++.++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 455556666666776654 456677788877752212 13344455666788888888888888887765
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.88 E-value=8.6 Score=34.22 Aligned_cols=99 Identities=16% Similarity=-0.006 Sum_probs=58.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHH
Q 036461 213 NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVEL 292 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (369)
.|+...|...+.......+.-..+....|.....+.|-.-.|-.++.+.+... ...+-++..+..++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 46666677666665554332233344455555566666666666666655543 23344566677777777778888887
Q ss_pred HHHHHHcCCCCCHHHHHHHHH
Q 036461 293 FRTLRILKYELDIRAYNCLID 313 (369)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~ 313 (369)
|+.+.+.. +.+...-+.|..
T Consensus 699 ~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 699 FRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred HHHHHhcC-CCChhhHHHHHH
Confidence 77777654 344555555443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=82.36 E-value=3.4 Score=19.27 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
.+|..+...+...|+++.|...|+...+..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 467788889999999999999999988754
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.64 E-value=26 Score=28.34 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
++......|..+|.+.+|.++.++....+ +.+...+..++..+...|+--.+.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 44555667778888888888888887776 6677777888888888888666666665553
|
|
| >PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B | Back alignment and domain information |
|---|
Probab=81.60 E-value=3.3 Score=24.41 Aligned_cols=46 Identities=28% Similarity=0.323 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 286 IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
++....+++.+... ..|....-.++.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444444432 23444444556666666666666666665543
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=81.33 E-value=26 Score=28.11 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=17.9
Q ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 268 ADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
-++.....+...|.+.|++.+|...|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35677778888888888888877655
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.12 E-value=12 Score=33.38 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=55.4
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHH
Q 036461 127 QPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSIL 206 (369)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (369)
.|-....|...-.+.-.|+...|...+..+.........+....|.+...+.|..-.|..++.+..... ...+-++-.+
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~ 682 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSL 682 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhc
Confidence 343334443333334456666666666655543222222233444555555566666666666655544 3344455556
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCC
Q 036461 207 INGYCKNKEIEGALSLYSEMLSKG 230 (369)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~ 230 (369)
..++....++++|++.|++..+..
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcC
Confidence 666666667777777776666653
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.01 E-value=28 Score=28.29 Aligned_cols=234 Identities=14% Similarity=0.043 Sum_probs=145.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCh----hHHHHHHHHHHHcCCCccHHHH
Q 036461 93 PNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKM----DEASRLLELMIQIGVRPNAFVY 168 (369)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 168 (369)
+|.......+..+...|. ..+...+..+... ++...-...+.++...|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 366666666666766664 3444444445443 3556666667777777764 4677777766443 3566666
Q ss_pred HHHHHHHHhcCCh-----HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 036461 169 NTLMDGFCLTGRV-----NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 243 (369)
Q Consensus 169 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (369)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5666666555421 234444444333 3456666677778877776 4667777777663 34455555555
Q ss_pred HHHhcc-cHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 036461 244 GLFEIH-QVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 244 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (369)
++...+ +.+.+...+..+.. .++..+-...+.++.+.|+. .+...+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 565543 23456666666664 35777888888899998884 5555555555432 2 345677888888885
Q ss_pred HHHHHHHhcccCCcccCHHHHHHHHHHHH
Q 036461 323 IAWELFRSLPRGVLIADVVTYNIMIHALC 351 (369)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 351 (369)
+|...+.++.+. .||..+-...+.++.
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 688888888864 457777666666664
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.95 E-value=38 Score=29.77 Aligned_cols=92 Identities=14% Similarity=0.169 Sum_probs=64.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--cCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHH
Q 036461 273 YRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLC--KSGRLKIAWELFRSLPRGVLIADVVTYNIMIHAL 350 (369)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 350 (369)
-+.++..+.+.|-..+|...+..+.... +|+...|..+++.-. .+-+...+..+|+.+...-- .|+..|...+..-
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG-ADSDLWMDYMKEE 540 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-CChHHHHHHHHhh
Confidence 3456677778888999999999988765 677778877776421 12226777888888765422 5788888877777
Q ss_pred HhcCchHHHHHHHHHh
Q 036461 351 CADGKMDKARDLFLDM 366 (369)
Q Consensus 351 ~~~g~~~~A~~~~~~m 366 (369)
...|..+.+-.++.+.
T Consensus 541 ~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRA 556 (568)
T ss_pred ccCCCcccccHHHHHH
Confidence 7788877776665443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.78 E-value=27 Score=27.89 Aligned_cols=204 Identities=15% Similarity=0.155 Sum_probs=129.7
Q ss_pred cccchhhHHHHHHH-HHhcCChHHHHHHHHHhHhCCCCCCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC--
Q 036461 56 CKPNTVTYTTIIDG-LCKEGFVDKAKELFLKMKDENINPNVV---TYNSLIHGFCYANDWNEAKCLFIEMMDQ---GV-- 126 (369)
Q Consensus 56 ~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~-- 126 (369)
..||+..=|..-.+ -.+...+++|+.-|++..+.......+ ....++....+.+++++....|.++..- .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 35666554433221 124558999999999998753222333 3456788899999999999999988642 11
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCccH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----C
Q 036461 127 QPNVVSFNVIMNELCKNGKMDEASRLLELMIQI-GVRPNA----FVYNTLMDGFCLTGRVNRAEELFVSMESMGC----K 197 (369)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~ 197 (369)
..+..+.+.++.......+.+....+|+.-++. .-..+. .|-..+...|...+++.+..++++++..... .
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 124456677777777677777666666554332 001122 2335678888999999999999998865421 1
Q ss_pred ch-------HHHHHHHHHHHhhcCChHHHHHHHHHHHhC-CCCCcHHhHHHHHHHH-----HhcccHHHHHHHHHH
Q 036461 198 HN-------VFSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPDVVIYNTLFIGL-----FEIHQVERAFKLFDE 260 (369)
Q Consensus 198 ~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~ 260 (369)
.| ...|..-++.|....+-.+...++++...- ...|.+.... +++-| .+.|++++|..-|-+
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHH
Confidence 12 345777788888888888888888887653 2344554443 33433 466788877654433
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=80.57 E-value=24 Score=27.32 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
.+.....+.|+.++|.++|.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3444555556666666666666554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=80.24 E-value=50 Score=30.61 Aligned_cols=196 Identities=13% Similarity=0.106 Sum_probs=115.3
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc--hhhHHHHHHHHH-hcCChHHHHHHHHHhHhCCCCC
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN--TVTYTTIIDGLC-KEGFVDKAKELFLKMKDENINP 93 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~ 93 (369)
.+...|..+|. .|++.++.+.+... ++|. ..+...++..+. ...+++.|...+++.....-.+
T Consensus 28 ~~l~~Y~kLI~---------~ai~CL~~~~~~~~-----l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~ 93 (608)
T PF10345_consen 28 EQLKQYYKLIA---------TAIKCLEAVLKQFK-----LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH 93 (608)
T ss_pred hhHHHHHHHHH---------HHHHHHHHHhccCC-----CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 34455666655 45667777774321 3443 445666777776 5789999999999875432222
Q ss_pred CHH-----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CChhhHHHH-HHHHHhCCChhHHHHHHHHHHHcC---
Q 036461 94 NVV-----TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ----PNVVSFNVI-MNELCKNGKMDEASRLLELMIQIG--- 160 (369)
Q Consensus 94 ~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~--- 160 (369)
+.. +...++..+.+.+... |...+++.++.--. +-...|..+ +..+...+++..|.+.++.+....
T Consensus 94 ~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~ 172 (608)
T PF10345_consen 94 RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR 172 (608)
T ss_pred chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc
Confidence 221 2234567777776655 99999887764211 122223333 222333479999999998877542
Q ss_pred CCccHHHHHHHHHHHH--hcCChHHHHHHHHHHHhcC---------CCchHHHHHHHHHHH--hhcCChHHHHHHHHHHH
Q 036461 161 VRPNAFVYNTLMDGFC--LTGRVNRAEELFVSMESMG---------CKHNVFSYSILINGY--CKNKEIEGALSLYSEML 227 (369)
Q Consensus 161 ~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 227 (369)
..|...++..++.+.. +.+..+++.+.++.+.... ..|...+|..++..+ ...|+++.+...++++.
T Consensus 173 ~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 173 GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2344455555555443 4565677777777663321 134556677666655 45777767666655553
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 89.9 bits (221), Expect = 1e-19
Identities = 24/210 (11%), Positives = 58/210 (27%), Gaps = 4/210 (1%)
Query: 112 NEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTL 171
A CL P ++ E +D Q +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 172 MDGFCLTGRVNRAEELFVSMESMGCKH---NVFSYSILINGYCKNKEIEGALSLYSEMLS 228
LT ++ A L V K + Y+ ++ G+ + + + + +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 229 KGIKPDVVIYNTLFIGLFEIHQVERAF-KLFDEMQRHGVAADTWAYRTFIDGLCKNGYIV 287
G+ PD++ Y + Q + ++M + G+ + + +
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 288 EAVELFRTLRILKYELDIRAYNCLIDGLCK 317
++ T + + L+ +
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 88.3 bits (217), Expect = 4e-19
Identities = 19/200 (9%), Positives = 60/200 (30%), Gaps = 4/200 (2%)
Query: 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT 60
A + T +A +L + +
Sbjct: 109 DVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL---LTL 165
Query: 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEA-KCLFI 119
Y ++ G ++G + + +KD + P++++Y + + + +
Sbjct: 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLE 225
Query: 120 EMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTG 179
+M +G++ + V+++E + + ++ P + L+
Sbjct: 226 QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285
Query: 180 RVNRAEELFVSMESMGCKHN 199
+L + ++++ C
Sbjct: 286 GRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.8 bits (213), Expect = 1e-18
Identities = 24/219 (10%), Positives = 57/219 (26%), Gaps = 4/219 (1%)
Query: 79 AKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138
A L + +P L+ + + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 139 ELCKNGKMDEASRLLEL---MIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG 195
++ A LL + Q +YN +M G+ G + ++ G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 196 CKHNVFSYSILINGYCKNKEIEGALSLY-SEMLSKGIKPDVVIYNTLFIGLFEIHQVERA 254
++ SY+ + + + G + +M +G+K + L ++
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 255 FKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELF 293
K+ + + V +L
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.1 bits (162), Expect = 3e-12
Identities = 15/188 (7%), Positives = 44/188 (23%), Gaps = 4/188 (2%)
Query: 184 AEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 243
A L + L+ ++ + + + F
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 244 GLFEIHQVERAFKLFD---EMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300
Q+ A L ++ Y + G + G E V + ++
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 301 YELDIRAYNCLIDGLCKSGR-LKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKA 359
D+ +Y + + + + + + L + +++ +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 360 RDLFLDME 367
+
Sbjct: 256 HKVKPTFS 263
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 3e-07
Identities = 6/76 (7%), Positives = 20/76 (26%), Gaps = 3/76 (3%)
Query: 297 RILKYELDIRAYNCLIDGLCKSGRLKIAWEL---FRSLPRGVLIADVVTYNIMIHALCAD 353
+ + + +L +A L + + + YN ++
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 354 GKMDKARDLFLDMEAK 369
G + + ++
Sbjct: 179 GAFKELVYVLFMVKDA 194
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 2e-05
Identities = 72/475 (15%), Positives = 132/475 (27%), Gaps = 165/475 (34%)
Query: 25 LINGLCRTGHTIVALNLFEEMANGNGEF-----GVVCK---PNTVTYTTIIDGLCKEG-- 74
L L +V EE+ N +F + T Y D L +
Sbjct: 67 LFWTLLSKQEEMVQ-KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 75 F----------VDKAKELFLKMKDENINPNVVTYNSLIHGF------CYAND-------- 110
F K ++ L+++ NV+ I G A D
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPA---KNVL-----IDGVLGSGKTWVALDVCLSYKVQ 177
Query: 111 --------W-NEAKC----LFIEMMDQ---GVQPNVVSFNVIMNELCKNGKMDEASRLLE 154
W N C +EM+ + + PN S + + + K + L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRR 236
Query: 155 LMIQIGVRPNAF-----VYN-TLMDGF---C---LTGR-------VNRAEELFVSMESMG 195
L+ N V N + F C LT R ++ A +S++
Sbjct: 237 LLKS-KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD--- 292
Query: 196 CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF--------- 246
H+ + + E++ L Y + + + +V+ N + +
Sbjct: 293 --HHSMTLT--------PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 247 --------EIHQVERAFKLF------DEMQRH---------------GVAADTWAYRTFI 277
++ + E ++ + + W
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 278 DGLCKNGYIVEAV--ELFRTLRILKY--ELDIRAYNCLIDGLCKSGRLKIAWELFRSL-- 331
D V V +L + + K E I + ++ K L RS+
Sbjct: 403 D--------VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY---ALHRSIVD 451
Query: 332 ----PRGVLIADVVT-------YN-IMIHALCAD--GKMDKARDLFLD---MEAK 369
P+ D++ Y+ I H + +M R +FLD +E K
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 42/273 (15%), Positives = 85/273 (31%), Gaps = 32/273 (11%)
Query: 77 DKAKELFLK-----MKDENINPN-VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ--P 128
KA LF + +DE + ++ ND A E + + ++ P
Sbjct: 213 TKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA----HEDIKKAIELFP 268
Query: 129 NVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELF 188
V S+ + + E + +++ N+ VY + ++A + F
Sbjct: 269 RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDF 327
Query: 189 ---VSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV-IYNTLFIG 244
++ N+F Y L + + + +L+SE P+ + N
Sbjct: 328 DKAKELDP----ENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEI 381
Query: 245 LFEIHQVERAFKLFDEM-QRHGVAADTWAYR-------TFIDGLCKNGYIVEAVELFRTL 296
L + + ++A K +D + + T + +EA L
Sbjct: 382 LTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441
Query: 297 RILKYELDIRAYNCLIDGLCKSGRLKIAWELFR 329
L +A L + + A LF
Sbjct: 442 SKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFE 473
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 369 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.94 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.94 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.92 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.92 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.91 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.91 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.91 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.9 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.89 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.89 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.88 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.87 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.87 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.85 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.82 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.82 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.82 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.8 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.8 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.8 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.79 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.79 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.78 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.78 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.78 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.77 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.77 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.76 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.75 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.75 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.75 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.75 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.75 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.74 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.74 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.73 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.72 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.72 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.71 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.7 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.69 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.69 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.68 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.68 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.66 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.66 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.65 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.65 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.64 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.63 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.62 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.58 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.57 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.57 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.57 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.56 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.56 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.54 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.51 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.49 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.49 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.48 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.43 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.43 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.43 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.4 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.4 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.4 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.4 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.39 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.38 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.38 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.37 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.36 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.35 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.34 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.33 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.32 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.31 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.3 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.29 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.29 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.28 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.28 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.27 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.26 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.26 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.24 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.23 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.23 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.22 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.18 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.11 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.11 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.1 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.08 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.08 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.06 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.06 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.06 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.06 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.05 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.04 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.04 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.04 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.04 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.03 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.03 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.02 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.02 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.01 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.01 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.0 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.99 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.99 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.98 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.97 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.95 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.95 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.95 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.93 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.93 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.93 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.93 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.92 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.91 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.88 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.88 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.86 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.85 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.84 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.84 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.83 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.81 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.8 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.79 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.78 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.77 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.77 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.77 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.76 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.76 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.75 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.73 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.72 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.69 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.69 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.68 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.68 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.66 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.65 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.62 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.62 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.56 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.54 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.54 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.54 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.54 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.53 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.53 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.52 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.5 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.5 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.49 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.48 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.43 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.43 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.39 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.39 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.38 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.37 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.37 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.35 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.3 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.25 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.23 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.2 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.16 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.15 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.07 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.07 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.98 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.93 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.66 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.63 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.6 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.6 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.56 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.53 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.5 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.48 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.44 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.44 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.32 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.31 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.25 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.23 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.19 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.19 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.15 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.05 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.04 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.92 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.83 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.81 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.61 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.39 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.37 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.09 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.96 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.95 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.37 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.3 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.28 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.17 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 95.06 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.02 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.95 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.59 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.54 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.36 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.3 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.18 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.82 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.75 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.56 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 93.24 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 92.39 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 90.76 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.57 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 89.36 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.23 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.13 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.91 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.84 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.75 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.69 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.1 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.42 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 85.13 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 83.09 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=265.38 Aligned_cols=232 Identities=10% Similarity=0.017 Sum_probs=154.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYC 211 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (369)
++..++.++...|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 418 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFA 418 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33333333333333333333333333322 3356666777777777777777777777776653 445667777777777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHH
Q 036461 212 KNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVE 291 (369)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 291 (369)
+.|++++|..+|+++.+.+. .+..++..++.+|.+.|++++|..+|+.+.+.. +.+..++..++..|.+.|++++|..
T Consensus 419 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 419 IEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp HHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 77777777777777776543 356677777777777777777777777777653 3466777777777777777777777
Q ss_pred HHHHHHHc----CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 292 LFRTLRIL----KYELD--IRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 292 ~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
+|+++.+. +..|+ ..+|..++.+|.+.|++++|...|+++.+.+ +.+..+|..++.+|.+.|++++|.++|++
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 77777655 44455 5677777777777777777777777777764 33667777777777777777777777777
Q ss_pred hhc
Q 036461 366 MEA 368 (369)
Q Consensus 366 m~~ 368 (369)
+.+
T Consensus 576 ~l~ 578 (597)
T 2xpi_A 576 SLA 578 (597)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-36 Score=266.13 Aligned_cols=328 Identities=10% Similarity=0.013 Sum_probs=252.0
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCc-----------------------------------------
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV----------------------------------------- 54 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------------------------------- 54 (369)
+++..+|+.++.++.+.|++++|+++|+++.+.++....
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 446889999999999999999999999999876632100
Q ss_pred -----------------------ccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCH
Q 036461 55 -----------------------VCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDW 111 (369)
Q Consensus 55 -----------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (369)
..+++..+|+.++.++.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCH
Confidence 013566777777777777888888888887777653 33667777777777788888
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036461 112 NEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
++|..+++++.... +.+..++..++..|.+.|++++|.++|+.+.+.. +.+..+|+.++.++.+.|++++|.++|+++
T Consensus 356 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 356 NKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888887777553 4467778888888888888888888888887754 346778888888888888888888888888
Q ss_pred HhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc----CCC
Q 036461 192 ESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH----GVA 267 (369)
Q Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~ 267 (369)
...+ +.+..++..++.+|.+.|++++|..+|+++.+.... +..+|..++..+.+.|++++|..+++++.+. +..
T Consensus 434 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 434 ARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 7764 557778888888888888888888888888876433 6778888888888888888888888887764 445
Q ss_pred cC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHH
Q 036461 268 AD--TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNI 345 (369)
Q Consensus 268 ~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 345 (369)
|+ ..++..++.+|.+.|++++|...++++.+.+ +.+..+|..++.+|...|++++|...|+++.+.. +.+...+..
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~ 589 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDL 589 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 65 6788888888888888888888888888765 5577888888888888888888888888887753 224556655
Q ss_pred HHHHH
Q 036461 346 MIHAL 350 (369)
Q Consensus 346 l~~~~ 350 (369)
+..+|
T Consensus 590 l~~~~ 594 (597)
T 2xpi_A 590 LKRAL 594 (597)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 55544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=230.01 Aligned_cols=352 Identities=16% Similarity=0.086 Sum_probs=313.7
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|++.++.+.+.. |.+..++..+...+...|++++|...++...+.. |.+..+|..+..++.+.|++++|+
T Consensus 16 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-------p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 16 EAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCchHHHHHHHHHHHHCCCHHHHH
Confidence 47899999998875 6677788888999999999999999999999876 677899999999999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
..|+++.+.. |.+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...|+.+.+..
T Consensus 88 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999998763 4467789999999999999999999999999874 2355677788889999999999999999999875
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHH
Q 036461 161 VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNT 240 (369)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (369)
+.+..++..+...+...|++++|...|+++...+ +.+...+..+...+...|++++|...+.+.....+. +..++..
T Consensus 166 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 242 (388)
T 1w3b_A 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGN 242 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHH
Confidence 4468899999999999999999999999999875 566788999999999999999999999999986433 6788899
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGR 320 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (369)
+...+...|++++|...++++.+.+ +.+..++..++..+.+.|++++|...++++.+.. +.+..++..++..+...|+
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999874 3467889999999999999999999999999876 7788999999999999999
Q ss_pred HHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 321 LKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
+++|...++++.+.. +.+..++..++.++.+.|++++|++.|+++.+
T Consensus 321 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 321 IEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999998863 44678999999999999999999999998864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-30 Score=216.27 Aligned_cols=338 Identities=16% Similarity=0.073 Sum_probs=298.1
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
+|...++...+.. |.+..+|..+...+.+.|++++|+..|+++.... |.+..+|..++.++.+.|++++|.+
T Consensus 51 ~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 51 RSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-------PDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------cchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6788888888775 7788999999999999999999999999999866 4567789999999999999999999
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGV 161 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (369)
.|+++.+.. |.+...+..+...+...|++++|...|+++.... +.+..+|..+...+...|++++|...|+++.+.+
T Consensus 123 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 199 (388)
T 1w3b_A 123 AYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD- 199 (388)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 999998863 3356778889999999999999999999999874 3367889999999999999999999999999876
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (369)
+.+...+..+...+...|++++|...+++..... +.+..++..+..++...|++++|...++++.+.++. +..++..+
T Consensus 200 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 277 (388)
T 1w3b_A 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNL 277 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHH
Confidence 4467889999999999999999999999998875 556888999999999999999999999999997533 57789999
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 036461 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRL 321 (369)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 321 (369)
...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..++..+.+.|++
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999874 5688899999999999999999999999998765 56788999999999999999
Q ss_pred HHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCc
Q 036461 322 KIAWELFRSLPRGVLIADVVTYNIMIHALCADGK 355 (369)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 355 (369)
++|...|+++.+.. +.+...|..+..++...|+
T Consensus 356 ~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 356 QEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 99999999998863 2356788888887776653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=236.65 Aligned_cols=205 Identities=14% Similarity=0.191 Sum_probs=182.3
Q ss_pred HHHHHHHHHHcCCCcCHh-HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC------
Q 036461 3 AAALFMKLRVFGCEPNVF-TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF------ 75 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 75 (369)
+..+.+++.+.+..+.+. .++.+|..|++.|++++|+++|++|.+.+ ++||..+|+.||.+|++.+.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G------v~pd~~tyn~Li~~c~~~~~~~~~~~ 82 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG------VQLSQYHYNVLLYVCSLAEAATESSP 82 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT------CCCCHHHHHHHHHHHTTCCCCSSSSC
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHhCCchhhhhh
Confidence 456677788777766655 58899999999999999999999999999 89999999999999987654
Q ss_pred ---hHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHH
Q 036461 76 ---VDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRL 152 (369)
Q Consensus 76 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (369)
+++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc
Q 036461 153 LELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKN 213 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (369)
|++|.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.+..|+..+|+.++..+...
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=232.88 Aligned_cols=202 Identities=15% Similarity=0.198 Sum_probs=119.1
Q ss_pred HHHHHhHhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC---------hhHHH
Q 036461 81 ELFLKMKDENINPNV-VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGK---------MDEAS 150 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~ 150 (369)
.+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|.+.+. .+.|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 333444444433332 23555556666666666666666666666666666666666666554433 35566
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 036461 151 RLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (369)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (369)
++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 036461 231 IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK 282 (369)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (369)
+.||..||+.|+.+|++.|+.++|.+++++|.+.+..|+..|++.++..|..
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666665543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-27 Score=205.55 Aligned_cols=327 Identities=13% Similarity=0.046 Sum_probs=271.1
Q ss_pred HHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHH
Q 036461 5 ALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 84 (369)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (369)
..|....... |.+...|..+...+.+.|++++|+.+|+++.... +.+..++..++.++...|++++|+..|+
T Consensus 13 ~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 13 LGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4455555543 6678899999999999999999999999999876 5678999999999999999999999999
Q ss_pred HhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHH------------HHHHHhCCChhHH
Q 036461 85 KMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV---VSFNVI------------MNELCKNGKMDEA 149 (369)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a 149 (369)
++.+.+ +.+..++..+..+|.+.|++++|...|+++..... .+. ..+..+ ...+...|++++|
T Consensus 85 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 85 KVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 998864 44788999999999999999999999999998642 233 455444 4458899999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 150 SRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
...++.+.+.. +.+..++..++.++...|++++|...|+++.... +.+..++..++.++...|++++|...++++...
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999875 4578889999999999999999999999998764 567889999999999999999999999999986
Q ss_pred CCCCcHHhHHHH------------HHHHHhcccHHHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHHhCCCHHHHHHH
Q 036461 230 GIKPDVVIYNTL------------FIGLFEIHQVERAFKLFDEMQRHGVAAD-----TWAYRTFIDGLCKNGYIVEAVEL 292 (369)
Q Consensus 230 ~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~ 292 (369)
.+. +...+..+ +..+...|++++|...++.+.+.. |+ ...+..++.++.+.|++++|...
T Consensus 241 ~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 241 DQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp CTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 432 34444444 788999999999999999998853 33 34788889999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHH
Q 036461 293 FRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIH 348 (369)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 348 (369)
++++.... +.+..++..++.+|...|++++|...|+++.+... -+...+..+..
T Consensus 318 ~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 371 (450)
T 2y4t_A 318 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHH
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 99998875 56789999999999999999999999999988532 25566666663
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-28 Score=210.62 Aligned_cols=352 Identities=10% Similarity=-0.042 Sum_probs=298.1
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|+..|+++.+.+ |++.+|..+..++.+.|++++|+..++++.+.+ |.+..++..++.++...|++++|+
T Consensus 23 ~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 23 DDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------PDYSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------hHHHHHHHHHHHHHHHHhhHHHHH
Confidence 37999999999985 799999999999999999999999999999876 566889999999999999999999
Q ss_pred HHHHHhHhCCCC--------------------------------------------------------------------
Q 036461 81 ELFLKMKDENIN-------------------------------------------------------------------- 92 (369)
Q Consensus 81 ~~~~~~~~~~~~-------------------------------------------------------------------- 92 (369)
..|+++...+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
T 2gw1_A 94 FDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173 (514)
T ss_dssp HHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCC
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCH
Confidence 999998775421
Q ss_pred ----------CCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----cCC--------CCChhhHHHHHHHHHhCCCh
Q 036461 93 ----------PNVVTYNSLIHGFCY---ANDWNEAKCLFIEMMD-----QGV--------QPNVVSFNVIMNELCKNGKM 146 (369)
Q Consensus 93 ----------~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~ 146 (369)
.+...+......+.. .|++++|...|+++.. ... +.+..++..+...+...|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
T 2gw1_A 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253 (514)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence 013333334444443 8999999999999987 311 12345778888999999999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 147 DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
++|...++.+.+.... ...+..+..++...|++++|...++++.... +.+..++..+...+...|++++|...++++
T Consensus 254 ~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 254 LGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999987533 8888999999999999999999999998875 556788999999999999999999999999
Q ss_pred HhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--
Q 036461 227 LSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELD-- 304 (369)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 304 (369)
.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.... +.+
T Consensus 331 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 407 (514)
T 2gw1_A 331 KELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDG 407 (514)
T ss_dssp HHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSS
T ss_pred HHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccch
Confidence 987543 66788899999999999999999999998864 3467788999999999999999999999998653 222
Q ss_pred ----HHHHHHHHHHHHc---CCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 305 ----IRAYNCLIDGLCK---SGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 305 ----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
...+..++..+.. .|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.|++..+
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3388999999999 999999999999998753 33678889999999999999999999998753
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-26 Score=195.75 Aligned_cols=317 Identities=11% Similarity=0.033 Sum_probs=261.5
Q ss_pred HHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 036461 37 VALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKC 116 (369)
Q Consensus 37 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 116 (369)
.+...+..+...+ |.+...+..++..+.+.|++++|+.+|+++.+. .+.+..++..+..++...|++++|..
T Consensus 10 ~~~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~ 81 (450)
T 2y4t_A 10 GVDLGTENLYFQS-------MADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALP 81 (450)
T ss_dssp --------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccccccccc-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555555544 567889999999999999999999999999876 34578999999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccH---HHHHHH------------HHHHHhcCCh
Q 036461 117 LFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNA---FVYNTL------------MDGFCLTGRV 181 (369)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~ 181 (369)
.|+++.+.+ +.+..++..+..++...|++++|...|+.+.+.. +.+. ..+..+ ...+...|++
T Consensus 82 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 82 DLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 999999875 3367889999999999999999999999999875 2234 455544 4458899999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHH
Q 036461 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 261 (369)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (369)
++|...++++.... +.+..++..++.++...|++++|...|+++.+... .+..++..++..+...|++++|...++.+
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998875 56788899999999999999999999999988643 36789999999999999999999999999
Q ss_pred HHcCCCcCHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHH
Q 036461 262 QRHGVAADTWAYRTF------------IDGLCKNGYIVEAVELFRTLRILKYELD----IRAYNCLIDGLCKSGRLKIAW 325 (369)
Q Consensus 262 ~~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~ 325 (369)
.+.. +.+...+..+ +..+...|++++|...|+++.... +.+ ...+..++.++.+.|++++|.
T Consensus 238 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 8763 3345555444 788999999999999999999864 223 447888999999999999999
Q ss_pred HHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 326 ELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
..++++.+.. +.+..+|..++.+|...|++++|.+.++++.+
T Consensus 316 ~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 316 RVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999988752 33688999999999999999999999998764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-25 Score=194.63 Aligned_cols=353 Identities=12% Similarity=0.033 Sum_probs=279.7
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|++.|+++.+.. |.++.+|..+..++.+.|++++|+..|+++.+.+ |.+..++..+..++...|++++|+
T Consensus 42 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 42 NEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-------PDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp C-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHcCCHHHHH
Confidence 47899999999886 6788899999999999999999999999999876 567888999999999999999999
Q ss_pred HHHHHhHhCCCC------------------------------------CCHH----------------------------
Q 036461 81 ELFLKMKDENIN------------------------------------PNVV---------------------------- 96 (369)
Q Consensus 81 ~~~~~~~~~~~~------------------------------------~~~~---------------------------- 96 (369)
..|+.+...... |+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (537)
T 3fp2_A 114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAY 193 (537)
T ss_dssp HHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSH
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHH
Confidence 988643211000 0000
Q ss_pred --hHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 97 --TYNSLIHGFCY--------ANDWNEAKCLFIEMMDQGVQPNV-------VSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 97 --~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
....+...+.. .+++++|..+++++.+.... +. .++..+...+...|++++|...++.+.+.
T Consensus 194 ~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 11111111111 24788899999988876322 22 24666777888999999999999999987
Q ss_pred CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHH
Q 036461 160 GVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYN 239 (369)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (369)
. |+...+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+..+. +...+.
T Consensus 273 ~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 348 (537)
T 3fp2_A 273 H--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYI 348 (537)
T ss_dssp C--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHH
T ss_pred C--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 4 457888899999999999999999999998875 567888999999999999999999999999987533 567888
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHH
Q 036461 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE-----LDIRAYNCLIDG 314 (369)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~ 314 (369)
.+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++...... .....+..+...
T Consensus 349 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 349 QLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 99999999999999999999998874 446778899999999999999999999998765311 122234455667
Q ss_pred HHcC----------CCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 315 LCKS----------GRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 315 ~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
+... |++++|...|+++.+.. +.+..++..+..++.+.|++++|++.|++..+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777 99999999999998753 33678899999999999999999999998753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-25 Score=194.81 Aligned_cols=337 Identities=11% Similarity=-0.023 Sum_probs=284.0
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
....|......+.+.|++++|+..|+++...+ |+..+|..++.++.+.|++++|++.++++.+.+ |.+..+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 75 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKV 75 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHH
Confidence 35678888999999999999999999999965 789999999999999999999999999998864 457789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------------------------------------------------
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPN------------------------------------------------ 129 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------------------------------ 129 (369)
+..+..++...|++++|...|+++...+...+
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 99999999999999999999999987642110
Q ss_pred ------------------------------hhhHHHHHHHHHh---CCChhHHHHHHHHHHH-----cCC--------Cc
Q 036461 130 ------------------------------VVSFNVIMNELCK---NGKMDEASRLLELMIQ-----IGV--------RP 163 (369)
Q Consensus 130 ------------------------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~ 163 (369)
...+......+.. .|++++|...++.+.+ ... +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 2222333333343 7999999999999988 311 23
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 243 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (369)
+..++..+...+...|++++|...++++.... |+...+..+..++...|++++|...++++...... +...+..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHH
Confidence 46678888999999999999999999998875 33888899999999999999999999999987533 6678889999
Q ss_pred HHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 036461 244 GLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKI 323 (369)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 323 (369)
.+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999874 3467788999999999999999999999999875 5578899999999999999999
Q ss_pred HHHHHHhcccCCcc-cC----HHHHHHHHHHHHh---cCchHHHHHHHHHhhc
Q 036461 324 AWELFRSLPRGVLI-AD----VVTYNIMIHALCA---DGKMDKARDLFLDMEA 368 (369)
Q Consensus 324 a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~ 368 (369)
|...++++.+.... ++ ...+..+..++.. .|++++|++.+++..+
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 99999998764211 11 3488899999999 9999999999998753
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-24 Score=178.90 Aligned_cols=321 Identities=12% Similarity=0.044 Sum_probs=267.6
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
++..+..+...+...|++++|+..|+++.+.. |.++.++..+..++...|++++|+..++++.+.. +.+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchH
Confidence 46788899999999999999999999999876 5678899999999999999999999999998863 447788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CChhhHHHH------------HHHHHhCCChhHHHHHHHHHHHcCCCc
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQ--PNVVSFNVI------------MNELCKNGKMDEASRLLELMIQIGVRP 163 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (369)
+..+..++...|++++|...|+++.+.... .+...+..+ ...+...|++++|...++.+.+.. +.
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 152 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VW 152 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 999999999999999999999999876320 244444444 578889999999999999999875 45
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHH----
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYN---- 239 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 239 (369)
+...+..+..++...|++++|...++++.... +.+..++..+...+...|++++|...+++..+..+. +...+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~ 230 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQ 230 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHH
Confidence 78889999999999999999999999998875 667888999999999999999999999999986433 333332
Q ss_pred --------HHHHHHHhcccHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 036461 240 --------TLFIGLFEIHQVERAFKLFDEMQRHGVAADT----WAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRA 307 (369)
Q Consensus 240 --------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 307 (369)
.+...+...|++++|...++.+.+.... +. ..+..+..++...|++++|...++++.+.. +.+..+
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 308 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNA 308 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHH
Confidence 2366788999999999999999886422 33 235567889999999999999999999875 568889
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh
Q 036461 308 YNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCA 352 (369)
Q Consensus 308 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 352 (369)
+..++..+...|++++|...|+++.+.. +.+...+..+..+...
T Consensus 309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 9999999999999999999999998863 2246666666665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-23 Score=172.21 Aligned_cols=303 Identities=11% Similarity=0.035 Sum_probs=256.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 46778899999999999999999999998863 4578899999999999999999999999999874 336788999999
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCC--ccHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCchHHHHH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVR--PNAFVYNTL------------MDGFCLTGRVNRAEELFVSMESMGCKHNVFSYS 204 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 204 (369)
++...|++++|...++.+.+.... .+...+..+ ...+...|++++|.+.++++.... +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999987420 244455444 578899999999999999998875 56788899
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHH----------
Q 036461 205 ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYR---------- 274 (369)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 274 (369)
.+..++...|++++|...++++.+..+ .+..++..+...+...|++++|...++.+.+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 999999999999999999999998753 377889999999999999999999999998864 23444333
Q ss_pred --HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHH
Q 036461 275 --TFIDGLCKNGYIVEAVELFRTLRILKYELDI----RAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIH 348 (369)
Q Consensus 275 --~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 348 (369)
.++..+...|++++|...++++.... +.+. ..+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 23667899999999999999999875 3333 235567889999999999999999998753 337889999999
Q ss_pred HHHhcCchHHHHHHHHHhhc
Q 036461 349 ALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 349 ~~~~~g~~~~A~~~~~~m~~ 368 (369)
++...|++++|.+.|++..+
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999998764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-23 Score=168.51 Aligned_cols=295 Identities=14% Similarity=0.062 Sum_probs=252.1
Q ss_pred cccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 036461 56 CKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNV 135 (369)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (369)
.+.++..+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 35678889999999999999999999999998763 4466777788899999999999999999999874 346778899
Q ss_pred HHHHHHhCC-ChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcC
Q 036461 136 IMNELCKNG-KMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNK 214 (369)
Q Consensus 136 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 214 (369)
+...+...| ++++|...++.+.+.. +.+...+..+..++...|++++|...++++.... +.+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999875 4467789999999999999999999999998875 445677778999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC--------CCcCHHHHHHHHHHHHhCCCH
Q 036461 215 EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG--------VAADTWAYRTFIDGLCKNGYI 286 (369)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~ 286 (369)
++++|...++++.+..+. +...+..+...+...|++++|...++.+.+.. .+.....+..+..++...|++
T Consensus 174 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999987543 67889999999999999999999999988642 133467889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHH-HhcCchH
Q 036461 287 VEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHAL-CADGKMD 357 (369)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 357 (369)
++|...++++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999999876 5678899999999999999999999999998863 33677888888888 4556544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-23 Score=180.37 Aligned_cols=336 Identities=11% Similarity=0.054 Sum_probs=267.7
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
....|..+...+.+.|++++|+..|+++...+ |.++.++..+..++.+.|++++|++.|+++.+.+ +.+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 95 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHH
Confidence 45678899999999999999999999999976 5678999999999999999999999999998864 457889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------------------------------------hh---------
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPN-------------------------------------VV--------- 131 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------------~~--------- 131 (369)
+..+..++...|++++|...|+.+ .....+. ..
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 999999999999999999999643 2111100 00
Q ss_pred ---------------------hHHHHHHHHHh--------CCChhHHHHHHHHHHHcCCCcc-------HHHHHHHHHHH
Q 036461 132 ---------------------SFNVIMNELCK--------NGKMDEASRLLELMIQIGVRPN-------AFVYNTLMDGF 175 (369)
Q Consensus 132 ---------------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~ 175 (369)
....+...+.. .|++++|..+++.+.+.... + ..++..+...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFH 253 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHH
Confidence 11111111111 14788899999988876422 2 23566777888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHH
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF 255 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (369)
...|++++|...++++.... |+...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999998874 45788889999999999999999999999987543 6778999999999999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 036461 256 KLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGV 335 (369)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 335 (369)
..++.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++..+...|++++|...|+++.+..
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 9999998864 3456788899999999999999999999999875 6678899999999999999999999999987632
Q ss_pred cc-----cCHHHHHHHHHHHHhc----------CchHHHHHHHHHhhc
Q 036461 336 LI-----ADVVTYNIMIHALCAD----------GKMDKARDLFLDMEA 368 (369)
Q Consensus 336 ~~-----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~ 368 (369)
.. .....+.....++.+. |++++|+..|++..+
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 11 1223345556778888 999999999998753
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-23 Score=169.58 Aligned_cols=295 Identities=13% Similarity=0.020 Sum_probs=253.4
Q ss_pred CCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036461 15 CEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN 94 (369)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (369)
.+.++..+..+...+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 89 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSN 89 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCC
Confidence 46677888999999999999999999999999876 5667888889999999999999999999998863 447
Q ss_pred HHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 036461 95 VVTYNSLIHGFCYAN-DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMD 173 (369)
Q Consensus 95 ~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (369)
...+..+...+...| ++++|...|++..... +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 167 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGL 167 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHH
Confidence 888999999999999 9999999999999874 3367788999999999999999999999999875 335667777999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC--------CCCcHHhHHHHHHHH
Q 036461 174 GFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG--------IKPDVVIYNTLFIGL 245 (369)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~ 245 (369)
.+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+.. .+....++..+...+
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 9999999999999999999875 5678889999999999999999999999998742 133456888999999
Q ss_pred HhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HcCCCHH
Q 036461 246 FEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGL-CKSGRLK 322 (369)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 322 (369)
...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999998864 3467889999999999999999999999998775 55778888888877 4555543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-20 Score=159.17 Aligned_cols=331 Identities=15% Similarity=0.035 Sum_probs=252.7
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh----c
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCR----TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK----E 73 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 73 (369)
+|+..|++..+.| ++.++..+...+.. .+++++|+..|++..+.+ ++..+..|...|.. .
T Consensus 61 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 61 QAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---------LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCC
Confidence 5777777777654 56677777777877 788888888888877643 45667777777777 6
Q ss_pred CChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----CCC
Q 036461 74 GFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK----NGK 145 (369)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 145 (369)
+++++|+..|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 78888888888887764 56677777777776 678888888888887764 56677777777777 788
Q ss_pred hhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh----cCChH
Q 036461 146 MDEASRLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK----NKEIE 217 (369)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 217 (369)
.++|..+|+...+.+ +...+..+...|.. .+++++|..+|++....+ +...+..+...+.. .++.+
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence 888888888887765 45566677777775 778888888888887664 34455666666666 78888
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc-----ccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC---CHHHH
Q 036461 218 GALSLYSEMLSKGIKPDVVIYNTLFIGLFEI-----HQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG---YIVEA 289 (369)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a 289 (369)
+|...|++..+.+ +...+..+...|... +++++|..+++...+.+ +...+..+...|...| ++++|
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A 350 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKA 350 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHH
Confidence 8888888888764 455666777777776 78899999998888764 4566777777777766 78889
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh----cCchHHHHH
Q 036461 290 VELFRTLRILKYELDIRAYNCLIDGLCK----SGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCA----DGKMDKARD 361 (369)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 361 (369)
...|++..+.+ ++..+..+...|.. .+++++|...|++..+.+ ++..+..+...|.. .+++++|.+
T Consensus 351 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 351 VEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99998888764 67788888888888 789999999999988764 56778888888888 789999999
Q ss_pred HHHHhhc
Q 036461 362 LFLDMEA 368 (369)
Q Consensus 362 ~~~~m~~ 368 (369)
+|++..+
T Consensus 425 ~~~~A~~ 431 (490)
T 2xm6_A 425 WFDTAST 431 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-22 Score=169.66 Aligned_cols=288 Identities=13% Similarity=-0.010 Sum_probs=188.1
Q ss_pred cCChHHHHH-HHHHhHhCCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhH
Q 036461 73 EGFVDKAKE-LFLKMKDENI---NPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDE 148 (369)
Q Consensus 73 ~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (369)
.|++++|++ .|++...... ..+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355666665 5554433211 0123445556666666666666666666666553 2345556666666666666666
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHH---------------HHHHHhhc
Q 036461 149 ASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSI---------------LINGYCKN 213 (369)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~ 213 (369)
|...++.+.+.. +.+..++..+..++...|++++|...++++.... +.+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 666666666554 3355566666666666666666666666665543 222211110 12233377
Q ss_pred CChHHHHHHHHHHHhCCCCC-cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHH
Q 036461 214 KEIEGALSLYSEMLSKGIKP-DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVEL 292 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (369)
|++++|...++++.+..+.. +..++..+...+...|++++|...++.+.+.. +.+...+..++..+...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888888764322 46778888888888888888888888887763 34677888888888888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCccc----------CHHHHHHHHHHHHhcCchHHHHHH
Q 036461 293 FRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIA----------DVVTYNIMIHALCADGKMDKARDL 362 (369)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~ 362 (369)
++++.... +.+..++..++.+|.+.|++++|...|+++.+..... ...+|..+..++...|++++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 88888765 5567888888888888999999988888876632111 157888888999999999998887
Q ss_pred HHH
Q 036461 363 FLD 365 (369)
Q Consensus 363 ~~~ 365 (369)
+++
T Consensus 353 ~~~ 355 (368)
T 1fch_A 353 DAR 355 (368)
T ss_dssp HTT
T ss_pred HHH
Confidence 764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-22 Score=166.31 Aligned_cols=294 Identities=12% Similarity=-0.011 Sum_probs=235.6
Q ss_pred HHhcCChhHHHH-HHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh
Q 036461 29 LCRTGHTIVALN-LFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY 107 (369)
Q Consensus 29 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (369)
+...|++++|+. .|++.....+.. ...+...+..+...+...|++++|+..|+++.+.. +.+..++..+..++..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 110 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEEN---PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAE 110 (368)
T ss_dssp -----------CHHHHCCCCCCSSC---TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCC---cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 445678899998 888766554210 11135678899999999999999999999999873 4578899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHH---------------HH
Q 036461 108 ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNT---------------LM 172 (369)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~ 172 (369)
.|++++|...|+++.+.. +.+..++..+..++...|++++|...++.+.+.... +...+.. .+
T Consensus 111 ~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 111 NEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTT
T ss_pred CcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHH
Confidence 999999999999999875 347888999999999999999999999999987532 2222211 23
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc
Q 036461 173 DGFCLTGRVNRAEELFVSMESMGCKH--NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ 250 (369)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (369)
..+...|++++|...++++.... +. +..++..+...+...|++++|...++++....+ .+..++..+...+...|+
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCC
Confidence 34448999999999999998875 33 578899999999999999999999999998743 367889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHcCC
Q 036461 251 VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELD-----------IRAYNCLIDGLCKSG 319 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g 319 (369)
+++|...++++.+.. +.+...+..+..+|...|++++|...++++.... +.+ ..+|..+..+|...|
T Consensus 267 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 267 SEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 999999999998864 4568899999999999999999999999998753 222 688999999999999
Q ss_pred CHHHHHHHHHhcc
Q 036461 320 RLKIAWELFRSLP 332 (369)
Q Consensus 320 ~~~~a~~~~~~~~ 332 (369)
++++|..++++..
T Consensus 345 ~~~~A~~~~~~~l 357 (368)
T 1fch_A 345 QSDAYGAADARDL 357 (368)
T ss_dssp CGGGHHHHHTTCH
T ss_pred ChHhHHHhHHHHH
Confidence 9999999988654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-19 Score=153.51 Aligned_cols=329 Identities=13% Similarity=0.019 Sum_probs=278.3
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh----cCC
Q 036461 4 AALFMKLRVFGCEPNVFTYNTLINGLCR----TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK----EGF 75 (369)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 75 (369)
++.+....+ +.++.++..+...+.. .+++++|+..|++..+.+ ++..+..|...|.. .++
T Consensus 27 ~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~ 94 (490)
T 2xm6_A 27 LEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------YTPAEYVLGLRYMNGEGVPQD 94 (490)
T ss_dssp HHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCC
Confidence 344555444 3478888889999988 899999999999998754 56788889999998 899
Q ss_pred hHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----CCChh
Q 036461 76 VDKAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK----NGKMD 147 (369)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 147 (369)
+++|++.|++..+.| ++..+..|...|.. .+++++|..+|++..+.| +...+..+...|.. .++++
T Consensus 95 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 95 YAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 999999999998865 67788888888988 789999999999998875 56778888888887 78999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh----cCChHHH
Q 036461 148 EASRLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK----NKEIEGA 219 (369)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 219 (369)
+|...|+...+.+ +...+..+...|.. .+++++|.+.|++..+.+ +..++..+...|.. .+++++|
T Consensus 169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999999875 67788888888888 899999999999998865 45667777777876 7899999
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHh----cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC-----CCHHHHH
Q 036461 220 LSLYSEMLSKGIKPDVVIYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN-----GYIVEAV 290 (369)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~ 290 (369)
..+|++..+.+ +...+..+...+.. .+++++|..+++...+.+ +...+..+...|... +++++|.
T Consensus 243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 99999999864 45667777777877 899999999999998764 566778888888887 8999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh----cCchHHHHHHH
Q 036461 291 ELFRTLRILKYELDIRAYNCLIDGLCKSG---RLKIAWELFRSLPRGVLIADVVTYNIMIHALCA----DGKMDKARDLF 363 (369)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 363 (369)
..|++..+.+ +...+..+...|...| ++++|...|++..+.+ ++..+..+...|.. .+++++|+++|
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999999865 5567888888888766 7899999999998863 67888899999998 89999999999
Q ss_pred HHhhc
Q 036461 364 LDMEA 368 (369)
Q Consensus 364 ~~m~~ 368 (369)
++..+
T Consensus 391 ~~A~~ 395 (490)
T 2xm6_A 391 RKAAE 395 (490)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-22 Score=167.78 Aligned_cols=266 Identities=11% Similarity=-0.010 Sum_probs=171.4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
+...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44557888888888888888888888887753 4467778888888888888888888888887764 335677777888
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCcc----------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--hHHHHHHH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPN----------AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKH--NVFSYSIL 206 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 206 (369)
++...|++++|...++.+.+... .+ ...+..+...+...|++++|...++++.... +. +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHH
Confidence 88888888888888888776531 11 1122334566666777777777777776653 22 45666666
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCH
Q 036461 207 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI 286 (369)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 286 (369)
...+...|++++|...++++.+..+ .+..++..+..++...|++++|...++++.+.. +.+...+..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 6777777777777777777666532 245566666666777777777777776666643 23456666666666677777
Q ss_pred HHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 036461 287 VEAVELFRTLRILKYE-----------LDIRAYNCLIDGLCKSGRLKIAWELFRS 330 (369)
Q Consensus 287 ~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 330 (369)
++|...|+++.+.... .+..+|..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7777777666543210 0245566666666666666666665554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-22 Score=167.38 Aligned_cols=267 Identities=13% Similarity=-0.003 Sum_probs=222.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 036461 94 NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMD 173 (369)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (369)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568889999999999999999999999875 3478899999999999999999999999999875 456889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCchHH----------HHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-CcHHhHHHHH
Q 036461 174 GFCLTGRVNRAEELFVSMESMGCKHNVF----------SYSILINGYCKNKEIEGALSLYSEMLSKGIK-PDVVIYNTLF 242 (369)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 242 (369)
++...|++++|...++++.... +.+.. .+..+...+...|++++|...++++.+..+. ++..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998763 22222 2334578899999999999999999987433 2678899999
Q ss_pred HHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 036461 243 IGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (369)
..+...|++++|...++++.+.. +.+..++..++.+|...|++++|...++++.+.. +.+..++..++.+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999874 4578899999999999999999999999999875 567889999999999999999
Q ss_pred HHHHHHHhcccCCcc-----------cCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 323 IAWELFRSLPRGVLI-----------ADVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 323 ~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
+|...|+++.+.... .+..+|..+..++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999998763211 1257899999999999999999887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-21 Score=156.70 Aligned_cols=279 Identities=8% Similarity=-0.046 Sum_probs=165.4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45667778888888888888888888887753 3467777788888888888888888888887763 335667777777
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHH-HH-HHhhcCCh
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSIL-IN-GYCKNKEI 216 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~ 216 (369)
.+...|++++|...++.+.+.... +...+..+.... ++......+ .. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 888888888888888887765321 222222220000 000001111 11 24455555
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036461 217 EGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTL 296 (369)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (369)
++|...++++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666555554322 44555555556666666666666666655542 234555566666666666666666666666
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCccc-----------CHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 297 RILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIA-----------DVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
.+.. +.+..++..++..+...|++++|...++++.+..... +..+|..+..++.+.|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5543 3445566666666666666666666666655431110 245566666666666666666666544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-20 Score=154.75 Aligned_cols=282 Identities=9% Similarity=-0.057 Sum_probs=197.6
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
+...+..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 91 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAV 91 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHH
Confidence 45567888999999999999999999999876 5678899999999999999999999999998863 457889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHH--HH
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMD--GF 175 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~ 175 (369)
+..+...+...|++++|...++++...... +...+..+.... |+......+.. .+
T Consensus 92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 92 HAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFF 148 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHH
Confidence 999999999999999999999999886422 333333321100 11111112212 25
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHH
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF 255 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (369)
...|++++|...++++.... +.+..++..+...+...|++++|...++++.+..+ .+..++..+...+...|++++|.
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHH
Confidence 55666666666666666553 34556666666666777777777777776666532 24566667777777777777777
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHcCCCHHHH
Q 036461 256 KLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYEL-----------DIRAYNCLIDGLCKSGRLKIA 324 (369)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a 324 (369)
..++++.+.. +.+...+..+..++...|++++|...++++....... +..++..+..++...|++++|
T Consensus 227 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 227 DAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 7777776653 3356677777777778888888888887777653111 466777788888888888888
Q ss_pred HHHHHhccc
Q 036461 325 WELFRSLPR 333 (369)
Q Consensus 325 ~~~~~~~~~ 333 (369)
..++++..+
T Consensus 306 ~~~~~~~l~ 314 (327)
T 3cv0_A 306 ELTYAQNVE 314 (327)
T ss_dssp HHHTTCCSH
T ss_pred HHHHHHHHH
Confidence 888876654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-18 Score=150.91 Aligned_cols=354 Identities=10% Similarity=-0.023 Sum_probs=244.9
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHH-HhcCChHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGL-CKEGFVDKAK 80 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~ 80 (369)
+|+.+|+++.+.. |.+...|..++..+.+.|++++|..+|+++.... |+...|...+... ...|+.+.|.
T Consensus 30 ~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--------p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 30 KARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--------LHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--------CCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHccchhhHH
Confidence 5788888888763 6677788888888888888888888888888754 5666777666432 3456666655
Q ss_pred H----HHHHhHhC-CCC-CCHHhHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHH-------
Q 036461 81 E----LFLKMKDE-NIN-PNVVTYNSLIHGFCY---------ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN------- 138 (369)
Q Consensus 81 ~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------- 138 (369)
+ +|+..... |.. ++...|...+....+ .|+++.|..+|++.++....+....|.....
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 4 56655432 322 345666666665544 5778888888888776311111122221111
Q ss_pred ----------------------------------------------------------HHHh----CCCh----hHHHHH
Q 036461 139 ----------------------------------------------------------ELCK----NGKM----DEASRL 152 (369)
Q Consensus 139 ----------------------------------------------------------~~~~----~~~~----~~a~~~ 152 (369)
.... .++. ..+..+
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 0000 0111 134455
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHH
Q 036461 153 LELMIQIGVRPNAFVYNTLMDGFCL-------TGRVN-------RAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (369)
|+++.... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++
T Consensus 261 y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 261 YEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 55555542 3356677777777665 68877 899999999863235568888899999999999999
Q ss_pred HHHHHHHHHhCCCCCc-HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhCCCHHHHHHHHHHH
Q 036461 219 ALSLYSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDG-LCKNGYIVEAVELFRTL 296 (369)
Q Consensus 219 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~ 296 (369)
|..+|+++.+..+. + ...|..++..+.+.|++++|..+|++..+.. +.+...+...+.. +...|+.++|..+|+..
T Consensus 340 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 340 VHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 99999999986322 3 2478888888888999999999999988753 2233333332222 34689999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCc-cc--CHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 297 RILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVL-IA--DVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
.+.. +.+...|..++..+.+.|+.++|..+|+++...+. .| ....|...+......|+.+.+..+++++.+
T Consensus 418 l~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 418 LKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8764 55788999999999999999999999999887532 22 245888888888889999999998887753
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-19 Score=154.24 Aligned_cols=347 Identities=12% Similarity=-0.063 Sum_probs=241.4
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCC-CC-cccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-----
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE-FG-VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE----- 89 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 89 (369)
.....|+.+...+...|++++|++.|++..+.... .+ ..-+....+|+.+..+|...|++++|...++++.+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999987653100 00 001223568999999999999999999999987542
Q ss_pred C--CCCCHHhHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH---HHhCCChhHHHHHHHHHHHcCCC
Q 036461 90 N--INPNVVTYNSLIHGFCY--ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNE---LCKNGKMDEASRLLELMIQIGVR 162 (369)
Q Consensus 90 ~--~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 162 (369)
+ ......++..+..++.. .+++++|+..|++..+..+ -+...+..+..+ +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 11234566666655554 4579999999999988642 244555554444 445688899999999998875 3
Q ss_pred ccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhH
Q 036461 163 PNAFVYNTLMDGFCL----TGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIY 238 (369)
Q Consensus 163 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (369)
.+..++..+...+.. .|++++|.+.+++..... +.+..++..+...+...|++++|...+.+..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 456666666655544 467889999999998775 667788999999999999999999999999987543 55666
Q ss_pred HHHHHHHHh-------------------cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 239 NTLFIGLFE-------------------IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 239 ~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
..+..+|.. .+.++.|...++...+.. +.+...+..+...+...|++++|...|+++...
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 666665533 234667888888877754 345567888999999999999999999999887
Q ss_pred CCCCCHH--HHHHHHH-HHHcCCCHHHHHHHHHhcccCCc-----------------------ccCHHHHHHHHHHHHhc
Q 036461 300 KYELDIR--AYNCLID-GLCKSGRLKIAWELFRSLPRGVL-----------------------IADVVTYNIMIHALCAD 353 (369)
Q Consensus 300 ~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~ 353 (369)
...+... .+..+.. .....|++++|+..|++..+... +.+..+|..+..+|...
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~ 443 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELN 443 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 5333221 2333332 34578999999999887764321 23466889999999999
Q ss_pred CchHHHHHHHHHhhc
Q 036461 354 GKMDKARDLFLDMEA 368 (369)
Q Consensus 354 g~~~~A~~~~~~m~~ 368 (369)
|++++|++.|++..+
T Consensus 444 g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 444 EKMQQADEDSERGLE 458 (472)
T ss_dssp HHCC-----------
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-18 Score=151.41 Aligned_cols=346 Identities=12% Similarity=0.024 Sum_probs=248.1
Q ss_pred HHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHh
Q 036461 7 FMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKM 86 (369)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (369)
|++.++.. |-+..+|..++. +.+.|++++|..+|+++.+.. |.+...|..++..+.+.|++++|..+|+++
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ra 72 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRC 72 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 56666664 668889999998 478999999999999999976 667889999999999999999999999999
Q ss_pred HhCCCCCCHHhHHHHHHHH-HhcCCHHHHHH----HHHHHHhc-CCCC-ChhhHHHHHHHHHh---------CCChhHHH
Q 036461 87 KDENINPNVVTYNSLIHGF-CYANDWNEAKC----LFIEMMDQ-GVQP-NVVSFNVIMNELCK---------NGKMDEAS 150 (369)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~ 150 (369)
... .|+...|..++... ...|+.+.|.+ +|++.+.. |..| +...|...+..... .|+++.|.
T Consensus 73 l~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~ 150 (530)
T 2ooe_A 73 LMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVR 150 (530)
T ss_dssp TTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHH
T ss_pred Hhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHH
Confidence 986 35888887777533 35577776655 77766543 4333 45567766665544 57888999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHH-------------HhcCChH-----------------------------------
Q 036461 151 RLLELMIQIGVRPNAFVYNTLMDGF-------------CLTGRVN----------------------------------- 182 (369)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~----------------------------------- 182 (369)
.+|++.++.........|....... ...+++.
T Consensus 151 ~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 151 RVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 9998887732111122222111100 0011112
Q ss_pred -------------------------HHHHHHHHHHhcCCCchHHHHHHHHHHHhh-------cCChH-------HHHHHH
Q 036461 183 -------------------------RAEELFVSMESMGCKHNVFSYSILINGYCK-------NKEIE-------GALSLY 223 (369)
Q Consensus 183 -------------------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~ 223 (369)
++..+|+++.... +.+...|..++..+.+ .|+++ +|..++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 3444555554442 4455666666666664 68876 899999
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCc-CH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 036461 224 SEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA-DT-WAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 301 (369)
++..+.-.+.+...+..++..+.+.|++++|..+|+++.+. .| +. ..|..++..+.+.|++++|..+|++..+..
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~- 386 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 386 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 99886322335778888888889999999999999999885 34 33 478888888888999999999999998753
Q ss_pred CCCHHHHHHHHHH-HHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 302 ELDIRAYNCLIDG-LCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 302 ~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
+.+...+...+.. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|+.+|++..+
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 3334444433332 335899999999999988752 33678899999999999999999999998754
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-19 Score=142.85 Aligned_cols=253 Identities=10% Similarity=0.049 Sum_probs=166.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc--hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 036461 26 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN--TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIH 103 (369)
Q Consensus 26 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (369)
++.....|++..|+..++...... |+ ......+.++|...|+++.|+..++. . -+|+..++..+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~--------p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~ 73 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS--------PERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAE 73 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS--------HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC--------chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHH
Confidence 345566788888888777665543 33 34556667788888888887775543 1 3456667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChH
Q 036461 104 GFCYANDWNEAKCLFIEMMDQGVQP-NVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (369)
.+...++.++|++.++++...+..| +...+..+...+...|++++|++.++. +.+...+..++..+.+.|+++
T Consensus 74 ~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 74 YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHH
Confidence 7777788888888888877665333 444556666777778888888877776 346667777777777788888
Q ss_pred HHHHHHHHHHhcCCCchHHHH---HHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHH
Q 036461 183 RAEELFVSMESMGCKHNVFSY---SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFD 259 (369)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (369)
+|.+.++++.... |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++
T Consensus 148 ~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 148 LARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888887777663 332111 122233344567777777777777653 3366667777777777777777777777
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHcC
Q 036461 260 EMQRHGVAADTWAYRTFIDGLCKNGYIVE-AVELFRTLRILK 300 (369)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~ 300 (369)
++.+.. +-++.++..++..+...|+.++ +..+++++.+..
T Consensus 225 ~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 225 EALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 766653 3356666667767777776654 456666666553
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-19 Score=145.06 Aligned_cols=275 Identities=9% Similarity=0.018 Sum_probs=218.5
Q ss_pred HHHHHhcCChHHHHHHHHHhHhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC
Q 036461 67 IDGLCKEGFVDKAKELFLKMKDENINPN--VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG 144 (369)
Q Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (369)
++.....|+++.|+..++..... .|+ ......+.++|...|+++.|+..++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 44556789999999999887554 233 34556678999999999999987754 23567778888999999999
Q ss_pred ChhHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHH
Q 036461 145 KMDEASRLLELMIQIGV-RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLY 223 (369)
Q Consensus 145 ~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (369)
+.++|++.++.+...+. +.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999988764 44667778888999999999999999987 467788999999999999999999999
Q ss_pred HHHHhCCCCCcHHhH---HHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 224 SEMLSKGIKPDVVIY---NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...+..+..++...|++++|...++++....
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999874 443211 22334444568999999999999987 45688899999999999999999999999999886
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHH-HHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHH
Q 036461 301 YELDIRAYNCLIDGLCKSGRLKI-AWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDL 362 (369)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 362 (369)
+.++.++..++..+...|+.++ +.++++++.+. .|+... +.....+.+.++++..-
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHH
Confidence 6688899999999999999876 57899998875 344332 23345555666666543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=153.58 Aligned_cols=279 Identities=11% Similarity=0.059 Sum_probs=122.8
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|.++++++ +++.+|..++.++.+.|++++|++.|.+ .+|...|..++.++...|++++|+
T Consensus 20 d~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 20 DRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 3566666666 3345888888888888888888888864 246668888888888888888888
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 877766653 3456777888888888888888887774 256678888888888888888888888866
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHH
Q 036461 161 VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNT 240 (369)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (369)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHH
Confidence 35788888888888888888888877 257788888888888888888865544322 23333456
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCCC------CHHHHHHHH
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN--GYIVEAVELFRTLRILKYEL------DIRAYNCLI 312 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~ 312 (369)
++..|.+.|.+++|..+++...... +-....|+.+..+|++- ++..+.++.|.. ..+++| +...|..+.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHH
Confidence 7788888888888888888887654 45677777777777654 334444444432 122232 456788888
Q ss_pred HHHHcCCCHHHHHHHHH
Q 036461 313 DGLCKSGRLKIAWELFR 329 (369)
Q Consensus 313 ~~~~~~g~~~~a~~~~~ 329 (369)
..|.+.++++.|....-
T Consensus 290 ~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 290 FLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHhhchHHHHHHHHH
Confidence 88888888888766443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=153.02 Aligned_cols=283 Identities=12% Similarity=0.141 Sum_probs=140.7
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (369)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|+
T Consensus 15 ~~~~ld~A~~fae~~~------------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCC
Confidence 6688999999999873 2359999999999999999999999653 477799999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036461 111 WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVS 190 (369)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (369)
+++|+.+++..++. .++..+...++.+|.+.|++.++.++++ .|+..+|..++..|...|.+++|..+|..
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988877764 3457788899999999999999988885 36778999999999999999999999997
Q ss_pred HHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCH
Q 036461 191 MESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT 270 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 270 (369)
+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +..++
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~a 207 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHA 207 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCH
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCH
Confidence 6 36899999999999999999999998 2789999999999999999999665543 23455
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHhcccCCccc------CHHH
Q 036461 271 WAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKS--GRLKIAWELFRSLPRGVLIA------DVVT 342 (369)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~ 342 (369)
.....++..|.+.|.+++|..+++...... +-....|..+.-+|.+- ++..+.++.|..-+. ++| +...
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in--i~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC--HHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc--CcHHHHHHHHHHH
Confidence 556678999999999999999999999776 66778888888888764 445566666654433 333 4568
Q ss_pred HHHHHHHHHhcCchHHHHHHH
Q 036461 343 YNIMIHALCADGKMDKARDLF 363 (369)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~ 363 (369)
|.-+...|.+.++++.|....
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHH
Confidence 999999999999999987643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-18 Score=133.38 Aligned_cols=200 Identities=14% Similarity=0.023 Sum_probs=141.0
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
|+++..+..+...+.+.|++++|+..|+++.+.+ |.++..+..+..++.+.|++++|+..|++..+.. |.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 6777888888888889999999999999888876 5678888888888888999999999998888763 4467
Q ss_pred HhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCcc
Q 036461 96 VTYNSLIHGFCYA-----------NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPN 164 (369)
Q Consensus 96 ~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (369)
..+..+..++... |++++|+..|++..+..+ -+...+..+..++...|++++|+..|+++.+.. .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 7888888888888 777777777777776532 255667777777777777777777777777766 46
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 036461 165 AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (369)
...+..+..++...|++++|...++++.+.. |.+...+..+..++...|++++|...+++..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 6677777777777777777777777776664 4556667777777777777777777766543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-17 Score=144.55 Aligned_cols=330 Identities=12% Similarity=-0.050 Sum_probs=224.7
Q ss_pred ChHHHHHHHHHHc--------CCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccc-cchhhHHHHHHHHH
Q 036461 1 MEAAALFMKLRVF--------GCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK-PNTVTYTTIIDGLC 71 (369)
Q Consensus 1 ~~A~~~~~~~~~~--------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 71 (369)
++|++.|++..+. ..+....+|+.+..+|...|++++|+..++++............ ....++..+..++.
T Consensus 68 ~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~ 147 (472)
T 4g1t_A 68 EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRL 147 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHH
Confidence 3677777766442 12334568999999999999999999999988754211110011 23456666666665
Q ss_pred hc--CChHHHHHHHHHhHhCCCCCCHHhHHHHHHHH---HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----
Q 036461 72 KE--GFVDKAKELFLKMKDENINPNVVTYNSLIHGF---CYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK---- 142 (369)
Q Consensus 72 ~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 142 (369)
.. +++++|++.|++..+.. |.++..+..+..++ ...++.++|+..+++.++.. +.+..++..+...+..
T Consensus 148 ~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~ 225 (472)
T 4g1t_A 148 KCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREE 225 (472)
T ss_dssp HHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC--
T ss_pred HHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhh
Confidence 54 57999999999998763 33566666655553 44677889999999988764 2355566655555544
Q ss_pred CCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc---------
Q 036461 143 NGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKN--------- 213 (369)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 213 (369)
.+++++|.+.++...... +.+..++..+...+...|++++|...++++.+.. |.+..++..+..+|...
T Consensus 226 ~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp ----CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 467889999999998875 4577888999999999999999999999998875 55666777666655432
Q ss_pred ----------CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHH--HHHHHHH-HH
Q 036461 214 ----------KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTW--AYRTFID-GL 280 (369)
Q Consensus 214 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~ 280 (369)
+..+.|...+++..+.++. +..++..+...+...|++++|...|++..+....+... .+..+.. ..
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 2356788888888776433 56678889999999999999999999998864333221 2223332 23
Q ss_pred HhCCCHHHHHHHHHHHHHcC-----------------------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 036461 281 CKNGYIVEAVELFRTLRILK-----------------------YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGV 335 (369)
Q Consensus 281 ~~~g~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 335 (369)
...|++++|+..|++..+.. -+.+..+|..+..+|...|++++|++.|++.++.+
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 46889999999988876542 14466789999999999999999999999998864
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-18 Score=130.61 Aligned_cols=113 Identities=11% Similarity=-0.041 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 214 KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
|++++|+..+++..+..+. +...+..+..++...|++++|+..++++.+.. .++..+..+..++...|++++|...|
T Consensus 98 g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444444444444433211 23333444444444444444444444444433 33344444444444444444444444
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 036461 294 RTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRS 330 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 330 (369)
+++.+.. |.+...+..+...+...|++++|+..|++
T Consensus 175 ~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 175 AKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444332 22333444444444444444444444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-17 Score=131.96 Aligned_cols=225 Identities=14% Similarity=0.095 Sum_probs=129.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CC----hhhH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ--PN----VVSF 133 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 133 (369)
...+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4566677777777777777777777776654 56667777777777777777777777776654211 11 3455
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc
Q 036461 134 NVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKN 213 (369)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (369)
..+..++...|++++|...++.+.+.. |+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 666666666666666666666666543 232 23444455666666666655543 33444555555555555
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 214 KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
|++++|...++++.+..+. +..++..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6666666666555554322 34455555555555555555555555555442 223445555555555555555555555
Q ss_pred HHHHH
Q 036461 294 RTLRI 298 (369)
Q Consensus 294 ~~~~~ 298 (369)
+++.+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-17 Score=131.49 Aligned_cols=227 Identities=13% Similarity=0.056 Sum_probs=187.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc--c----HHH
Q 036461 94 NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRP--N----AFV 167 (369)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~ 167 (369)
....+..+...+...|++++|...|++..+.. .+..++..+..++...|++++|...++.+.+..... + ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678888899999999999999999998876 678889999999999999999999999988753211 1 578
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 036461 168 YNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE 247 (369)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (369)
+..+..++...|++++|...++++.... |+. ..+...|++++|...++++....+ .+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHH
Confidence 8888999999999999999999998763 443 345666788999999999888632 255677888888899
Q ss_pred cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 036461 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 327 (369)
.|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999988764 3467888888999999999999999999988775 55688888889999999999999999
Q ss_pred HHhcccC
Q 036461 328 FRSLPRG 334 (369)
Q Consensus 328 ~~~~~~~ 334 (369)
++++.+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-17 Score=130.10 Aligned_cols=247 Identities=15% Similarity=0.034 Sum_probs=155.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--hhhHHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPN--VVSFNVIM 137 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 137 (369)
+..+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..+++..+.+..++ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4456667777778888888888888877753 33555777777788888888888888888776321111 12366777
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChH
Q 036461 138 NELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (369)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (369)
.++...|++++|...++.+.+.. +.+..++..+..++...|++++|...+++..... +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 77777788888888777777764 3355667777777777777777777777776653 445556666662333344777
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc---HHHHHHHHHHHHHcC-CCcC------HHHHHHHHHHHHhCCCHH
Q 036461 218 GALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ---VERAFKLFDEMQRHG-VAAD------TWAYRTFIDGLCKNGYIV 287 (369)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~ 287 (369)
+|...++++.+..+. +...+..+...+...++ +++|...++++.+.. ..|+ ...+..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 777777777765322 34555556666666665 556666666655421 0122 134555666666666777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHH
Q 036461 288 EAVELFRTLRILKYELDIRAYNCL 311 (369)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~l 311 (369)
+|...++++.+.. |.+...+..+
T Consensus 239 ~A~~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 239 KADAAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccHHHHHHHh
Confidence 7776666666554 3344444333
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-17 Score=130.49 Aligned_cols=251 Identities=10% Similarity=0.020 Sum_probs=201.3
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC--CH
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP--NV 95 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 95 (369)
|+..+......+...|++++|+..|+++.+.. |.+...+..+..++...|++++|++.++++.+.+..+ ..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 74 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKS 74 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHH
Confidence 44567778899999999999999999999876 4567799999999999999999999999998843111 13
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF 175 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (369)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+...+
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAY 152 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHH
Confidence 348899999999999999999999999874 3366789999999999999999999999998874 44677787777455
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC---hHHHHHHHHHHHhCC-CCCc------HHhHHHHHHHH
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKE---IEGALSLYSEMLSKG-IKPD------VVIYNTLFIGL 245 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~ 245 (369)
...+++++|.+.++++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..++..+...+
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 55669999999999998875 4557778888888888888 888999999887642 1223 25777889999
Q ss_pred HhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 036461 246 FEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDG 279 (369)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (369)
...|++++|...++.+.+.. +.+......+...
T Consensus 232 ~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALD-PTNKKAIDGLKMK 264 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC--
T ss_pred HHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhhh
Confidence 99999999999999999864 3355555444433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-16 Score=133.07 Aligned_cols=233 Identities=12% Similarity=0.066 Sum_probs=161.7
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC-hHHHHHHHHHhHhCCCCCCHHh
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF-VDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
..+|..+..++.+.|++++|+..++++...+ |.+..+|+.+..++...|+ +++|+..|++++... +-+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a 168 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQV 168 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHH
Confidence 4567777777778888888888888887765 4557777888888888885 888888888877753 336777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCL 177 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (369)
|..+..++...|++++|+..|++++.... -+...|..+..++...|++++|+..++++++.. +.+...|+.+..++..
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 77777888888888888888888777643 366677777777777888888888888877765 3366777777777777
Q ss_pred -cCChHHH-----HHHHHHHHhcCCCchHHHHHHHHHHHhhcC--ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcc
Q 036461 178 -TGRVNRA-----EELFVSMESMGCKHNVFSYSILINGYCKNK--EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH 249 (369)
Q Consensus 178 -~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (369)
.|..++| +..+++..... +.+...|..+..++...| ++++|+..+.++ +. .+.+...+..++.+|...|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHh
Confidence 4554666 46677766654 445666777777776666 567777777666 32 2234556666666666653
Q ss_pred ---------cHHHHHHHHHHH-HHc
Q 036461 250 ---------QVERAFKLFDEM-QRH 264 (369)
Q Consensus 250 ---------~~~~a~~~~~~~-~~~ 264 (369)
..++|..+++++ .+.
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHh
Confidence 246667777666 443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-15 Score=121.34 Aligned_cols=225 Identities=14% Similarity=0.032 Sum_probs=173.3
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhH
Q 036461 58 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDWNEAKCLFIEMMDQGVQPNVVSF 133 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (369)
-++.++..+...+...|++++|++.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45677888888888888888888888888873 356777778888888 888888888888888765 66777
Q ss_pred HHHHHHHHh----CCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCchHHHHHH
Q 036461 134 NVIMNELCK----NGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAEELFVSMESMGCKHNVFSYSI 205 (369)
Q Consensus 134 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (369)
..+...+.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 778888888 888888888888888764 66677778888888 888888888888887764 4556666
Q ss_pred HHHHHhh----cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cccHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 036461 206 LINGYCK----NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWAYRTFI 277 (369)
Q Consensus 206 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 277 (369)
+...+.. .+++++|...|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777776 788888888888887763 45666677777777 788888888888777754 255667777
Q ss_pred HHHHh----CCCHHHHHHHHHHHHHcC
Q 036461 278 DGLCK----NGYIVEAVELFRTLRILK 300 (369)
Q Consensus 278 ~~~~~----~g~~~~a~~~~~~~~~~~ 300 (369)
..|.. .+++++|...|++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777 778888888888777664
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-16 Score=132.33 Aligned_cols=248 Identities=9% Similarity=-0.025 Sum_probs=170.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND-WNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
...|..+..++...|++++|++.+++++... +.+...|+.+..++...|+ +++|+..|++++..... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4567777777888888888888888887753 3367777888888888886 88888888888776433 6677777888
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh-cCChH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK-NKEIE 217 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 217 (369)
++...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++.... +.+..+|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888888775 3467777778888888888888888888887765 5567777777777777 55546
Q ss_pred HH-----HHHHHHHHhCCCCCcHHhHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC------
Q 036461 218 GA-----LSLYSEMLSKGIKPDVVIYNTLFIGLFEIH--QVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG------ 284 (369)
Q Consensus 218 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 284 (369)
+| +..+++.+...+. +...|..+...+...| ++++|...+..+ +. .+.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 4667676665433 4556666666666655 466777766666 32 2345566666666666653
Q ss_pred ---CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHH
Q 036461 285 ---YIVEAVELFRTL-RILKYELDIRAYNCLIDGL 315 (369)
Q Consensus 285 ---~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 315 (369)
..++|..+|+++ .+.+ +.....|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 246677777776 4443 33444555444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-16 Score=137.21 Aligned_cols=330 Identities=12% Similarity=-0.020 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCh---hHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC----
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHT---IVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG---- 74 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 74 (369)
+|+++|++..+.| ++.++..+...+...|+. ++|+..|++..+ . ++..+..+...+...+
T Consensus 21 ~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~---------~-~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 21 TAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD---------T-SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHT---CCTGGGTCC--------------------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh---------C-CHHHHHHHHHHHHhCCCCCC
Confidence 5777777777665 344555566666667777 777777777764 1 4556666666455444
Q ss_pred -ChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHH
Q 036461 75 -FVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDW---NEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEAS 150 (369)
Q Consensus 75 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (369)
++++|+..|++..+.|.+ ..+..|...|...+.. .++...+......| +......+...|...+.++++.
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 667788888877775532 2555566565554432 23344444443333 2334444555555555433333
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc----CChHHHHHHH
Q 036461 151 RLLELMIQIGVRPNAFVYNTLMDGFCLTG---RVNRAEELFVSMESMGCKHNVFSYSILINGYCKN----KEIEGALSLY 223 (369)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~ 223 (369)
.....+.+.-...++..+..+..+|...| +.++|++.|++....+ +++...+..+...|... +++++|...|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 33222221111112225555666666666 6666666666666665 34444444455555433 5666666666
Q ss_pred HHHHhCCCCCcHHhHHHHHHH-H--HhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC-----CHHHHHHHHHH
Q 036461 224 SEMLSKGIKPDVVIYNTLFIG-L--FEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG-----YIVEAVELFRT 295 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~ 295 (369)
++.. .| +...+..+... + ...+++++|..+|++..+.| +......+...|. .| ++++|...|++
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 6665 22 33444444444 2 34566666666666666554 4455555555555 33 66666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh----cCchHHHHHHHHHh
Q 036461 296 LRILKYELDIRAYNCLIDGLCK----SGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCA----DGKMDKARDLFLDM 366 (369)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m 366 (369)
.. +.++.....|...|.. ..++++|...|++..+.|. ......|...|.. ..++++|..+|+..
T Consensus 313 Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 313 AV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp TT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred Hh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 55 2345555555555554 2366666666666665442 2333444444443 23566666665543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-15 Score=120.91 Aligned_cols=226 Identities=13% Similarity=0.021 Sum_probs=199.3
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh----cCChHHHHHHHHHhHhCCC
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENI 91 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 91 (369)
+.++.++..+...+...|++++|+..|++..+.+ +..++..+...+.. .+++++|+..|++..+.+
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence 3467889999999999999999999999998743 45788889999999 999999999999999875
Q ss_pred CCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCc
Q 036461 92 NPNVVTYNSLIHGFCY----ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK----NGKMDEASRLLELMIQIGVRP 163 (369)
Q Consensus 92 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 163 (369)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--- 144 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--- 144 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---
T ss_pred --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---
Confidence 78889999999999 999999999999999875 67888899999999 999999999999999976
Q ss_pred cHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh----cCChHHHHHHHHHHHhCCCCCcH
Q 036461 164 NAFVYNTLMDGFCL----TGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPDV 235 (369)
Q Consensus 164 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 235 (369)
+...+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +.
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~ 218 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NG 218 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CH
Confidence 56677788888888 999999999999998874 45677888889999 999999999999999874 36
Q ss_pred HhHHHHHHHHHh----cccHHHHHHHHHHHHHcC
Q 036461 236 VIYNTLFIGLFE----IHQVERAFKLFDEMQRHG 265 (369)
Q Consensus 236 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 265 (369)
..+..+...|.. .+++++|...++...+.+
T Consensus 219 ~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 677888888988 999999999999998875
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-16 Score=122.48 Aligned_cols=201 Identities=14% Similarity=0.025 Sum_probs=114.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNE 139 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (369)
...+..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4455555555566666666666666555432 2345555555556666666666666666655542 2244455555556
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHH
Q 036461 140 LCKNGKMDEASRLLELMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (369)
+...|++++|...++.+.+.+..| +...+..+..++...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666655521122 34455555666666666666666666665543 3345555666666666666666
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 219 ALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
|...++++.+... .+...+..+...+...|++++|...++.+.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666655432 24455555666666666666666666666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-17 Score=130.66 Aligned_cols=247 Identities=10% Similarity=-0.014 Sum_probs=111.8
Q ss_pred hcCChHHHHHHHHHhHhCCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhH
Q 036461 72 KEGFVDKAKELFLKMKDENI---NPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDE 148 (369)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (369)
..|++++|+..|+++.+... +.+..++..+...+...|++++|...|+++.... +.+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34555555555555554321 1123444555555555555555555555555442 2234445555555555555555
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 149 ASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
|...++.+.+.. +.+..++..+..++...|++++|...++++.... |
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~------------------------------ 142 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--P------------------------------ 142 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------------------------
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C------------------------------
Confidence 555555555442 2234444444445555555555555555444432 2
Q ss_pred CCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---CCH
Q 036461 229 KGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE---LDI 305 (369)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~ 305 (369)
+..........+...|++++|...+....... +++...+ .++..+...++.++|...++.+...... .+.
T Consensus 143 -----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 215 (275)
T 1xnf_A 143 -----NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLS 215 (275)
T ss_dssp -----TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred -----CChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccccccccc
Confidence 11122222222233455555555554444331 1222222 2344444455555555555554432100 013
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHH
Q 036461 306 RAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLF 363 (369)
Q Consensus 306 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (369)
.++..++..|...|++++|...|+++.... |+. +.....++...|++++|++.+
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 455555666666666666666666665542 211 222234455556666655544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.6e-17 Score=126.34 Aligned_cols=203 Identities=14% Similarity=0.131 Sum_probs=128.7
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.....|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..++++.+.. +.+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 92 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-------KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAAT 92 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchH
Confidence 344566777777777888888888888877755 4567777777777778888888888887776652 33667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFC 176 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (369)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 77777777777788888888777777653 3356666777777777777777777777777654 335666667777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 036461 177 LTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (369)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (369)
..|++++|...++++.... +.+..++..+..++...|++++|...++++.+..
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7777777777777776654 4455666677777777777777777777776653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-16 Score=119.51 Aligned_cols=202 Identities=13% Similarity=0.024 Sum_probs=118.2
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.++.+|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 77 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAE 77 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChH
Confidence 345566666666677777777777777666654 3445666666666666677777777666666542 33555
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 036461 97 TYNSLIHGFCYA-NDWNEAKCLFIEMMDQGVQP-NVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDG 174 (369)
Q Consensus 97 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (369)
++..+...+... |++++|...++++.+.+..| +...+..+..++...|++++|...++.+.+.. +.+...+..+..+
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 156 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELART 156 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHH
Confidence 666666666666 66666666666666521112 23445555566666666666666666665543 2245555555566
Q ss_pred HHhcCChHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 175 FCLTGRVNRAEELFVSMESMGCK-HNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
+...|++++|...++++.... + .+...+..+...+...|+.+.+..+++.+.+
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666666666666555443 2 3444445555555555556555555555554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9e-15 Score=134.72 Aligned_cols=220 Identities=12% Similarity=0.159 Sum_probs=123.0
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (369)
..+++++|.++.++. .++.+|..+..++...|++++|++.|.+. .|...|..++.++.+.|+
T Consensus 1088 ~i~nldrAiE~Aerv------------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGk 1149 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGN 1149 (1630)
T ss_pred HHhhHHHHHHHHHhc------------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCC
Confidence 556677777776643 13566667777777777777777777543 256666667777777777
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036461 111 WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVS 190 (369)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (369)
+++|.+.|...++.. ++......++.+|++.+++++...+ ++ .++...+..+...|...|++++|..+|..
T Consensus 1150 yEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1150 WEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred HHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 777777776666543 2222223466666666666543322 21 23444555566666777777777777666
Q ss_pred HHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCH
Q 036461 191 MESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT 270 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 270 (369)
+ ..|..++.++.+.|++++|.+.+++.. +..+|..+..+|...|++..|......+ ..++
T Consensus 1221 A---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~ 1280 (1630)
T 1xi4_A 1221 V---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHA 1280 (1630)
T ss_pred h---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCH
Confidence 3 256666666666666666666666552 3344444444444444444444433221 1233
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036461 271 WAYRTFIDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (369)
..+..++..|.+.|.+++|+.+++...
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 334444444444444444444444443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.8e-15 Score=135.52 Aligned_cols=302 Identities=10% Similarity=0.086 Sum_probs=146.1
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
-++.--...+++|...|.+.+|+++++++.-.+.+| ..+...-+.++.+..+. +..+..++.++.... +
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~f----s~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d-- 1051 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVF----SEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D-- 1051 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcc----cccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c--
Confidence 345555677788889999999999999988543211 12344444454444333 233333333333211 0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc----------------------CCCCChhhHHHHHHHHHhCCChhHHHHHHH
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQ----------------------GVQPNVVSFNVIMNELCKNGKMDEASRLLE 154 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 154 (369)
...+...+...|.+++|..+|++.... .+ -+..+|..+..++...|++++|+..|.
T Consensus 1052 -~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv-n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1052 -APDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 111333333444444444444432100 00 123445555555555555555555553
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc
Q 036461 155 LMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 234 (369)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (369)
+. .+...|..++.++.+.|++++|.+++....+.. +++...+.++.+|.+.+++++...+ .+ .++
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n 1194 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPN 1194 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCC
Confidence 32 244445555555555555555555555544432 2222222344555555544432222 11 123
Q ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036461 235 VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDG 314 (369)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (369)
...+..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++.. +..+|..+..+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 334444555555555555555555542 244555555555555555555555442 23444444444
Q ss_pred HHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 315 LCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 315 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.-
T Consensus 1260 cve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444433321 124445556666677777777777776553
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-16 Score=135.10 Aligned_cols=313 Identities=13% Similarity=0.051 Sum_probs=214.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCCh---HHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFV---DKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.+...+.+.|++++|+++|++..+.+ ++..+..|...|...|+. ++|+..|++..+. ++..+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~ 74 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQAR 74 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---------CCTGGGTCC--------------------------------CHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHH
Confidence 36778889999999999999998754 455666777777778888 9999999998864 5666777
Q ss_pred HHHHHHhcC-----CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChh---HHHHHHHHHHHcCCCccHHHHHHHH
Q 036461 101 LIHGFCYAN-----DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMD---EASRLLELMIQIGVRPNAFVYNTLM 172 (369)
Q Consensus 101 l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (369)
+...+...+ ++++|+.+|++..+.|. ...+..+...|...+... .+.+.+......| +......+.
T Consensus 75 Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg 148 (452)
T 3e4b_A 75 LGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQV 148 (452)
T ss_dssp HHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHH
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 777555554 78999999999998763 336777888887766543 4555555555554 344566778
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcC---ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc-
Q 036461 173 DGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNK---EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEI- 248 (369)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 248 (369)
..|...+.++++......+...-...++..+..+...|...| +.++|+..|++..+.|.. +...+..+...|...
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGG
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC
Confidence 888888866555544333322211233347888888999999 999999999999998744 555556677777655
Q ss_pred ---ccHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-H--HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---
Q 036461 249 ---HQVERAFKLFDEMQRHGVAADTWAYRTFIDG-L--CKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSG--- 319 (369)
Q Consensus 249 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 319 (369)
+++++|..+|+... . -++..+..+... + ...+++++|...|++..+.+ +...+..|...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 78999999999987 3 355667777776 4 56899999999999999866 6778888888887 55
Q ss_pred --CHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh----cCchHHHHHHHHHhhc
Q 036461 320 --RLKIAWELFRSLPRGVLIADVVTYNIMIHALCA----DGKMDKARDLFLDMEA 368 (369)
Q Consensus 320 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 368 (369)
++++|...|++.. . .++..+..|...|.. ..++++|.++|++..+
T Consensus 300 ~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp CCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 9999999999998 4 367778888877776 3499999999987654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-16 Score=128.36 Aligned_cols=252 Identities=12% Similarity=-0.025 Sum_probs=172.2
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYA 108 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (369)
+...|++++|+..|+++.+..+.. .+.+..++..++.++...|++++|+..|+++.+.. +.+..++..+..++...
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALT---DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT
T ss_pred cCccchHHHHHHHHHHHHhccccc---CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHc
Confidence 334577888888888888753100 12346777888888888888888888888887753 34677888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 036461 109 NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELF 188 (369)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (369)
|++++|...|+++.... +.+..++..+..++...|++++|...++.+.+.. |+.......+..+...|++++|...+
T Consensus 91 ~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888888888887763 2356777788888888888888888888887764 33333334444556678888888888
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC---cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC
Q 036461 189 VSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP---DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG 265 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (369)
....... +++...+. ++..+...++.++|...+.+........ +...+..+...+...|++++|...++.+.+..
T Consensus 168 ~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 168 KQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 7776653 33444443 5666777777788888888776642211 14667778888888888888888888887753
Q ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 266 VAADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
|+. +.....++...|++++|+..+
T Consensus 246 --p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 --VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CTT--CHHHHHHHHHHHHHHHC----
T ss_pred --chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 321 223355666777888877765
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=153.65 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=122.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHh---CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKD---ENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI 136 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (369)
..+|+++|.+|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCh-hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCch------HHHHHHHHHH
Q 036461 137 MNELCKNGKM-DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN------VFSYSILING 209 (369)
Q Consensus 137 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 209 (369)
+.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+. .+++..+++ ..++.|+ ..+...+...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999985 78999999999999999999999888655443 344444444 2222332 3334445555
Q ss_pred HhhcC
Q 036461 210 YCKNK 214 (369)
Q Consensus 210 ~~~~~ 214 (369)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=154.05 Aligned_cols=119 Identities=12% Similarity=0.174 Sum_probs=109.4
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHc---CCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMAN---GNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN 94 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (369)
-..+|+++|.+|++.|++++|.++|+.|.+ .+ +.||..+||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG------~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR------KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH------TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC------CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Confidence 445899999999999999999999988764 34 689999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 036461 95 VVTYNSLIHGFCYAND-WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK 142 (369)
Q Consensus 95 ~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (369)
..||+++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 9999999999999998 57899999999999999999999988765544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-15 Score=117.72 Aligned_cols=201 Identities=12% Similarity=-0.017 Sum_probs=127.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 036461 95 VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDG 174 (369)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (369)
...+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...++.+.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666777777777777777777776653 2355666667777777777777777777776654 3355666666677
Q ss_pred HHhcCChHHHHHHHHHHHhcCC-CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHH
Q 036461 175 FCLTGRVNRAEELFVSMESMGC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVER 253 (369)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (369)
+...|++++|.+.++++...+. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777665211 234555666666666667777777766666664322 45555666666666666666
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 254 AFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
|...++.+.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666665542 234555556666666666666666666666654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-17 Score=137.73 Aligned_cols=300 Identities=15% Similarity=0.082 Sum_probs=216.4
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc----hhhHHHHHHHHHhcCChHHHHHHHHHhHhC--
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN----TVTYTTIIDGLCKEGFVDKAKELFLKMKDE-- 89 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 89 (369)
++....+......+...|++++|+..|+++.+.. +.+ ..++..+...+...|++++|...++++...
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 78 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR 78 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4556677888899999999999999999999865 233 357888999999999999999999987542
Q ss_pred --CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhCCC----------------
Q 036461 90 --NIN-PNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ-PN----VVSFNVIMNELCKNGK---------------- 145 (369)
Q Consensus 90 --~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~---------------- 145 (369)
+.+ ....++..+...+...|++++|...+++....... ++ ..++..+...+...|+
T Consensus 79 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 79 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 111 12557788889999999999999999888653110 11 3367778888888899
Q ss_pred ----hhHHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC---chHHHHHHHHHHHh
Q 036461 146 ----MDEASRLLELMIQI----GV-RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG--CK---HNVFSYSILINGYC 211 (369)
Q Consensus 146 ----~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~ 211 (369)
+++|...++...+. +. +....++..+...+...|++++|...+++..... .. ....++..+...+.
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 88888888876643 11 1224567778888899999999999988876431 01 11236778888888
Q ss_pred hcCChHHHHHHHHHHHhCC----CCC-cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHH
Q 036461 212 KNKEIEGALSLYSEMLSKG----IKP-DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVA-AD----TWAYRTFIDGLC 281 (369)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~ 281 (369)
..|++++|...+++..... ..+ ...++..+...+...|++++|...++...+.... .+ ...+..+...|.
T Consensus 239 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 318 (406)
T 3sf4_A 239 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 9999999999988877531 111 1456777888888899999999888887653111 11 456777888888
Q ss_pred hCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHcCCCHH
Q 036461 282 KNGYIVEAVELFRTLRIL----KY-ELDIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~ 322 (369)
..|++++|...+++..+. +. +....++..+...+...|+..
T Consensus 319 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 319 ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 899999999988887643 11 112445666777777666653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.4e-15 Score=114.47 Aligned_cols=166 Identities=10% Similarity=-0.026 Sum_probs=71.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
++..+..++..+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34455555555555555555555555554431 2234445555555555555555555555554432 123334444444
Q ss_pred HHHhC-CChhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCh
Q 036461 139 ELCKN-GKMDEASRLLELMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (369)
Q Consensus 139 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (369)
.+... |++++|...++.+.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 44444 44444444444444411111 12333334444444444444444444443332 22233333333333333333
Q ss_pred HHHHHHHHHHH
Q 036461 217 EGALSLYSEML 227 (369)
Q Consensus 217 ~~a~~~~~~~~ 227 (369)
++|...++++.
T Consensus 164 ~~A~~~~~~~~ 174 (225)
T 2vq2_A 164 GDADYYFKKYQ 174 (225)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-16 Score=122.41 Aligned_cols=165 Identities=14% Similarity=0.137 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNE 139 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (369)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555555555666666666666555532 2345555555555555555555555555555442 1234444444555
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHH
Q 036461 140 LCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGA 219 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (369)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555544433 2233444444444444444444444444444332 22333333344444444444444
Q ss_pred HHHHHHHHh
Q 036461 220 LSLYSEMLS 228 (369)
Q Consensus 220 ~~~~~~~~~ 228 (369)
...++++.+
T Consensus 179 ~~~~~~~~~ 187 (243)
T 2q7f_A 179 LSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-16 Score=134.42 Aligned_cols=273 Identities=16% Similarity=0.107 Sum_probs=156.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCCCh
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV----VTYNSLIHGFCYANDWNEAKCLFIEMMDQ----G-VQPNV 130 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 130 (369)
...+..+...+...|++++|+..|+++.+.+. .+. ..+..+...|...|++++|...+++.... + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 44555667777788888888888888776522 232 45677777777888888888888777543 1 11233
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcC-----CCccHHHHHHHHHHHHhcCC-----------------hHHHHHHH
Q 036461 131 VSFNVIMNELCKNGKMDEASRLLELMIQIG-----VRPNAFVYNTLMDGFCLTGR-----------------VNRAEELF 188 (369)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 188 (369)
.++..+...+...|++++|...++++.+.. .+....++..+...+...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 456667777777777777777777766541 12234456666677777777 66776666
Q ss_pred HHHHhc----CC-CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-Cc----HHhHHHHHHHHHhcccHHHHHHHH
Q 036461 189 VSMESM----GC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK-PD----VVIYNTLFIGLFEIHQVERAFKLF 258 (369)
Q Consensus 189 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 258 (369)
++.... +. +....++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 665432 10 112235555666666666666666666666553110 01 114555556666666666666666
Q ss_pred HHHHHcCCC-c----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 036461 259 DEMQRHGVA-A----DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY-----ELDIRAYNCLIDGLCKSGRLKIAWELF 328 (369)
Q Consensus 259 ~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~ 328 (369)
++..+.... . ....+..+...+...|++++|...+++...... .....++..+...|...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 655442110 0 133445555556666666666666665543210 011234455555555666666666666
Q ss_pred Hhccc
Q 036461 329 RSLPR 333 (369)
Q Consensus 329 ~~~~~ 333 (369)
++..+
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-16 Score=132.41 Aligned_cols=303 Identities=14% Similarity=0.064 Sum_probs=214.2
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC
Q 036461 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN----VVTYNSLIHGFCYANDWNEAKCLFIEMMDQ----GVQP 128 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 128 (369)
.+....+......+...|++++|+..|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4456667788889999999999999999998763 223 356788889999999999999999987543 1111
Q ss_pred -ChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-cc----HHHHHHHHHHHHhcCC--------------------hH
Q 036461 129 -NVVSFNVIMNELCKNGKMDEASRLLELMIQIGVR-PN----AFVYNTLMDGFCLTGR--------------------VN 182 (369)
Q Consensus 129 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 182 (369)
...++..+...+...|++++|...++...+.... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2446777888889999999999999988876211 11 3467778888888999 88
Q ss_pred HHHHHHHHHHhc----CC-CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC-CCc----HHhHHHHHHHHHhcccHH
Q 036461 183 RAEELFVSMESM----GC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI-KPD----VVIYNTLFIGLFEIHQVE 252 (369)
Q Consensus 183 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 252 (369)
+|...+.+.... +. +....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888876542 11 12234677788888888999999998888876411 111 236777788888889999
Q ss_pred HHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHcCCCHH
Q 036461 253 RAFKLFDEMQRHGVA-AD----TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE-L----DIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 253 ~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~ 322 (369)
+|...+++..+.... .+ ..++..+...+...|++++|...+++....... . ...++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 998888887653111 11 446677788888889999998888887654211 1 1456777888888888888
Q ss_pred HHHHHHHhcccCCcccC-----HHHHHHHHHHHHhcCchHHHH
Q 036461 323 IAWELFRSLPRGVLIAD-----VVTYNIMIHALCADGKMDKAR 360 (369)
Q Consensus 323 ~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~ 360 (369)
+|...+++..+...... ..++..+..++...|+...+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 88888888887532222 234555556666666655443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=135.65 Aligned_cols=273 Identities=14% Similarity=0.083 Sum_probs=212.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccch----hhHHHHHHHHHhcCChHHHHHHHHHhHhC----C-
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT----VTYTTIIDGLCKEGFVDKAKELFLKMKDE----N- 90 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~- 90 (369)
..+..+...+...|++++|+..|+++.+.. +.+. .++..+..++...|++++|+..+++..+. +
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC
Confidence 345667788899999999999999999875 2333 57889999999999999999999988653 1
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCCChhhHHHHHHHHHhCCC-----------------hhH
Q 036461 91 INPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ----G-VQPNVVSFNVIMNELCKNGK-----------------MDE 148 (369)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~ 148 (369)
.+....++..+...|...|++++|...+++.... + .+....++..+...+...|+ +++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 1224567888999999999999999999988654 1 11234477788889999999 999
Q ss_pred HHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---C--chHHHHHHHHHHHhhcCChHH
Q 036461 149 ASRLLELMIQI----GV-RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGC---K--HNVFSYSILINGYCKNKEIEG 218 (369)
Q Consensus 149 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~ 218 (369)
|...+++..+. +. +....++..+...+...|++++|...+++...... . ....++..+...+...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 99998887653 11 22345778889999999999999999998865420 1 112377888999999999999
Q ss_pred HHHHHHHHHhCCC--C---CcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHHHHhCCCHHH
Q 036461 219 ALSLYSEMLSKGI--K---PDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG-----VAADTWAYRTFIDGLCKNGYIVE 288 (369)
Q Consensus 219 a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~ 288 (369)
|...+++...... . ....++..+...+...|++++|...+++..+.. .......+..+..+|...|++++
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 361 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER 361 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH
Confidence 9999998876411 0 124577888999999999999999999887531 11124477788999999999999
Q ss_pred HHHHHHHHHHc
Q 036461 289 AVELFRTLRIL 299 (369)
Q Consensus 289 a~~~~~~~~~~ 299 (369)
|...+++..+.
T Consensus 362 A~~~~~~al~~ 372 (411)
T 4a1s_A 362 ALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999865
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-15 Score=125.10 Aligned_cols=295 Identities=12% Similarity=0.015 Sum_probs=212.5
Q ss_pred HHHhcCChHHHHHHHHHhHhC--CCCCC--HHhHHHHHHH--HHhcCCHHHHH-----------HHHHHHHhcCCCCChh
Q 036461 69 GLCKEGFVDKAKELFLKMKDE--NINPN--VVTYNSLIHG--FCYANDWNEAK-----------CLFIEMMDQGVQPNVV 131 (369)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~ 131 (369)
.+.+.+++++|..+++++.+. .+..+ ...|..++.. ..-.+.++.+. ..++.+.... .+..
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 345689999999999998653 22223 3333443322 22233444444 6666664431 1112
Q ss_pred h------HHHHHHHHHhCCChhHHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--C--
Q 036461 132 S------FNVIMNELCKNGKMDEASRLLELMIQI----GVRP-NAFVYNTLMDGFCLTGRVNRAEELFVSMESMG--C-- 196 (369)
Q Consensus 132 ~------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-- 196 (369)
. +......+...|++++|...++...+. +.++ ...++..+...+...|++++|...+.+..... .
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 1 223566788899999999999999874 2122 35678889999999999999999999886531 1
Q ss_pred --CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC----CC-cHHhHHHHHHHHHhcccHHHHHHHHHHHHHc----C
Q 036461 197 --KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI----KP-DVVIYNTLFIGLFEIHQVERAFKLFDEMQRH----G 265 (369)
Q Consensus 197 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~ 265 (369)
+....++..+..+|...|++++|...+.+..+... .+ ...++..+...|...|++++|...+++..+. +
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 12245788899999999999999999999876411 11 1247888999999999999999999998762 2
Q ss_pred C-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHcCCC---HHHHHHHHHhcccCCcc
Q 036461 266 V-AADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK----YELDIRAYNCLIDGLCKSGR---LKIAWELFRSLPRGVLI 337 (369)
Q Consensus 266 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~ 337 (369)
. +....++..+..++...|++++|...+++..... -+.....+..+...+...|+ +++|+.++++... .+
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~ 336 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YA 336 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HH
Confidence 3 4446778899999999999999999999987542 12223345678888899998 8888888888732 22
Q ss_pred cCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 338 ADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
.....+..+...|...|++++|.+.+++..
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334577789999999999999999998865
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.3e-16 Score=126.69 Aligned_cols=276 Identities=16% Similarity=0.109 Sum_probs=141.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCh
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN----VVTYNSLIHGFCYANDWNEAKCLFIEMMDQ----GVQ-PNV 130 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 130 (369)
...+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++.... +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3445555666677777777777777766642 112 245566666677777777777777665432 101 113
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-cc----HHHHHHHHHHHHhcCC--------------------hHHHH
Q 036461 131 VSFNVIMNELCKNGKMDEASRLLELMIQIGVR-PN----AFVYNTLMDGFCLTGR--------------------VNRAE 185 (369)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 185 (369)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 34455555555666666666666555443100 01 2244444455555555 44444
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC-CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 186 ELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI-KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
+.+++..... ...+. .....++..+...+...|++++|...++...+.
T Consensus 164 ~~~~~a~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 164 DLYEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4444432110 00000 001223444555555555555555555554431
Q ss_pred C----C-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 265 G----V-AADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE-L----DIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 265 ~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
. . ......+..+...+...|++++|...+++....... . ...++..+...+...|++++|...++++.+.
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 0 0 001224555556666666666666666665432100 0 1345556666666777777777766665432
Q ss_pred C-----cccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 335 V-----LIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 335 ~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
. ......++..+..++.+.|++++|.+.+++..
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1 01113356666777777777777777777654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.2e-16 Score=127.91 Aligned_cols=238 Identities=16% Similarity=0.116 Sum_probs=155.8
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc----hhhHHHHHHHHHhcCChHHHHHHHHHhHhC----
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN----TVTYTTIIDGLCKEGFVDKAKELFLKMKDE---- 89 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 89 (369)
+...+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|++.+++....
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 76 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 34456677888999999999999999999865 223 467889999999999999999999987542
Q ss_pred CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhCCC------------------
Q 036461 90 NIN-PNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ-PN----VVSFNVIMNELCKNGK------------------ 145 (369)
Q Consensus 90 ~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~------------------ 145 (369)
+.+ ....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 77 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH
Confidence 111 23567788899999999999999999987653111 12 3367778888888899
Q ss_pred --hhHHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----C-CchHHHHHHHHHHHhhc
Q 036461 146 --MDEASRLLELMIQI----GV-RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG----C-KHNVFSYSILINGYCKN 213 (369)
Q Consensus 146 --~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~ 213 (369)
+++|...++...+. +. +....++..+...+...|++++|...+++..... . .....++..+...+...
T Consensus 157 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 236 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 236 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc
Confidence 88888888776542 11 1123456666777777777777777777665321 0 00122455555566666
Q ss_pred CChHHHHHHHHHHHhCCCC-Cc----HHhHHHHHHHHHhcccHHHHHHHHHHHH
Q 036461 214 KEIEGALSLYSEMLSKGIK-PD----VVIYNTLFIGLFEIHQVERAFKLFDEMQ 262 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (369)
|++++|...+++....... .+ ..++..+...+...|++++|...++...
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6666666666655432100 00 2234444444555555555555554443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-14 Score=117.47 Aligned_cols=216 Identities=10% Similarity=0.030 Sum_probs=163.1
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHcC-CCCCCcccccchhhHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCR-------TGHT-------IVALNLFEEMANG-NGEFGVVCKPNTVTYTTI 66 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 66 (369)
+|+.+|++.++.. |.++..|..++..+.. .|++ ++|..+|++.... . |.+...|..+
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-------p~~~~~~~~~ 105 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-------KKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-------cccHHHHHHH
Confidence 5778999999874 7788899999888764 5886 8999999999984 4 4567789999
Q ss_pred HHHHHhcCChHHHHHHHHHhHhCCCCC-CHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hC
Q 036461 67 IDGLCKEGFVDKAKELFLKMKDENINP-NVV-TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELC-KN 143 (369)
Q Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 143 (369)
+..+...|++++|.++|+++.+. .| +.. .|..++..+.+.|++++|..+|++.++.. +++...|........ ..
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999985 34 344 78889999999999999999999998764 234444443333322 26
Q ss_pred CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCc--hHHHHHHHHHHHhhcCChHHHH
Q 036461 144 GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG-CKH--NVFSYSILINGYCKNKEIEGAL 220 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~ 220 (369)
|++++|..+|+...+.. +.+...+..++..+.+.|++++|..+|++..... ++| ....|..++....+.|+.+.|.
T Consensus 183 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 78888888888777653 3356777777777777788888888888777652 233 3456677777777777777777
Q ss_pred HHHHHHHhC
Q 036461 221 SLYSEMLSK 229 (369)
Q Consensus 221 ~~~~~~~~~ 229 (369)
.+++++.+.
T Consensus 262 ~~~~~a~~~ 270 (308)
T 2ond_A 262 KVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-15 Score=124.48 Aligned_cols=300 Identities=9% Similarity=-0.041 Sum_probs=211.4
Q ss_pred HHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHH--HHhcCChHHHH-----------HHHHHhHhCCCCCC
Q 036461 28 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDG--LCKEGFVDKAK-----------ELFLKMKDENINPN 94 (369)
Q Consensus 28 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~ 94 (369)
.+.+.+++++|..+++++.+.-.... -.++...|..++.. ....++++.+. +.++.+... +.+
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~--~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~ 96 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQME--EDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QAR 96 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCC
Confidence 35678999999999999876431100 01233333333322 22234444444 666666542 112
Q ss_pred HHh------HHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC---
Q 036461 95 VVT------YNSLIHGFCYANDWNEAKCLFIEMMDQ----GVQP-NVVSFNVIMNELCKNGKMDEASRLLELMIQIG--- 160 (369)
Q Consensus 95 ~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 160 (369)
... +......+...|++++|...+++.... +..+ ...++..+..++...|++++|...+++..+..
T Consensus 97 ~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 97 LTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 222 223667788899999999999999764 1111 24578889999999999999999999887641
Q ss_pred ---CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CC-CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC---
Q 036461 161 ---VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM----GC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSK--- 229 (369)
Q Consensus 161 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 229 (369)
.+....++..+..+|...|++++|...+++.... +. +....++..+..+|...|++++|...+++..+.
T Consensus 177 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 1123457888899999999999999999988643 11 112347888999999999999999999999872
Q ss_pred -CC-CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcC
Q 036461 230 -GI-KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH----GVAADTWAYRTFIDGLCKNGY---IVEAVELFRTLRILK 300 (369)
Q Consensus 230 -~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~ 300 (369)
+. +....++..+...+...|++++|...+++..+. +.+.....+..+...+...|+ +++|..++++...
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-- 334 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-- 334 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--
Confidence 22 334567889999999999999999999987753 112223335678888889999 7777777776521
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 301 YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
.+.....+..+...|...|++++|...+++..+
T Consensus 335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 123445777899999999999999999988754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-14 Score=114.91 Aligned_cols=236 Identities=11% Similarity=0.034 Sum_probs=161.0
Q ss_pred CHhHHHHHHHHHHhc----CCh----hHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh-------cCCh------
Q 036461 18 NVFTYNTLINGLCRT----GHT----IVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK-------EGFV------ 76 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~------ 76 (369)
+...|...+....+. ++. ++|+..|+++.... |.++..|..++..+.. .|++
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~ 79 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 79 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccc
Confidence 345677777665543 233 68889999999875 5678889888887763 4775
Q ss_pred -HHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hh-hHHHHHHHHHhCCChhHHHHHH
Q 036461 77 -DKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPN-VV-SFNVIMNELCKNGKMDEASRLL 153 (369)
Q Consensus 77 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~ 153 (369)
++|..+|++....-.+.+...|..++..+.+.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888888887312335668888888888888888888888888875 333 33 6777777777788888888888
Q ss_pred HHHHHcCCCccHHHHHHHHHHHH-hcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC-C
Q 036461 154 ELMIQIGVRPNAFVYNTLMDGFC-LTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG-I 231 (369)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~ 231 (369)
+++.+.. +.+...|........ ..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... .
T Consensus 158 ~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 8887764 234444443333322 2577777777777776553 4456666677777777777777777777777652 2
Q ss_pred CC--cHHhHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 232 KP--DVVIYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 232 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
+| ....|..++......|+.+.|..+++++.+.
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33 2445666666666667777777777666654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-14 Score=108.18 Aligned_cols=168 Identities=13% Similarity=0.052 Sum_probs=122.8
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.++.+|..+...+.+.|++++|+..|++..+.+ |.++.++..+..++.+.|++++|+..+....... +.+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 74 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAE 74 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHH
Confidence 356677778888888888888888888887765 4567777788888888888888888887776653 33566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFC 176 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (369)
.+..+...+...++++.|...+.+..... +.+...+..+..++...|++++|++.|++..+.. +.+..++..+..++.
T Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 75 AYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHH
Confidence 67777777777788888888777777653 3356667777777777777777777777777764 346667777777777
Q ss_pred hcCChHHHHHHHHHHHhc
Q 036461 177 LTGRVNRAEELFVSMESM 194 (369)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~ 194 (369)
+.|++++|++.|++..+.
T Consensus 153 ~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHhC
Confidence 777777777777777665
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-15 Score=129.03 Aligned_cols=217 Identities=13% Similarity=0.012 Sum_probs=163.8
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCh-hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 036461 110 DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKM-DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELF 188 (369)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (369)
.++++...++...... +.+...+..+..++...|++ ++|+..|+++.+.. +.+...+..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566666776665542 34667777788888888888 88888888888765 345777888888888888888888888
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhhc---------CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc--------ccH
Q 036461 189 VSMESMGCKHNVFSYSILINGYCKN---------KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEI--------HQV 251 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 251 (369)
+++.+.. |+...+..+..++... |++++|+..+++..+..+. +...+..+..++... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 8888764 5567777888888888 8888888888888876433 567777788888777 888
Q ss_pred HHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 036461 252 ERAFKLFDEMQRHGVA--ADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFR 329 (369)
Q Consensus 252 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 329 (369)
++|...+++..+.... .+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|...+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888775321 367778888888888888888888888887765 5566677778888888888888887776
Q ss_pred hcc
Q 036461 330 SLP 332 (369)
Q Consensus 330 ~~~ 332 (369)
++.
T Consensus 317 ~~~ 319 (474)
T 4abn_A 317 KTK 319 (474)
T ss_dssp TCC
T ss_pred ccc
Confidence 653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-14 Score=124.72 Aligned_cols=193 Identities=12% Similarity=-0.018 Sum_probs=87.5
Q ss_pred cHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 036461 164 NAFVYNTLMDGFCLTGRV-NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 242 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (369)
+...+..+...+...|++ ++|++.|+++.+.. +.+..+|..+..+|...|++++|...|++..+.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 344444444444444444 45555444444432 2334444444444444455555555544444432 2334444444
Q ss_pred HHHHhc---------ccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHcCCC---
Q 036461 243 IGLFEI---------HQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN--------GYIVEAVELFRTLRILKYE--- 302 (369)
Q Consensus 243 ~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~--- 302 (369)
..+... |++++|...++++.+.. +.+...+..+..+|... |++++|...|+++.... +
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcc
Confidence 444444 44445554444444432 22344444444444444 44455555444444432 2
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHH
Q 036461 303 LDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDL 362 (369)
Q Consensus 303 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 362 (369)
.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|++.
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244444444444444455555554444444321 11333444444444444444444443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-14 Score=107.33 Aligned_cols=167 Identities=16% Similarity=0.071 Sum_probs=113.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 243 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (369)
++.+|..+...+...|++++|++.|++..+.. |.+..++..+..++.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 45566667777777777777777777776654 455666667777777777777777777776665333 4555566666
Q ss_pred HHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 036461 244 GLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKI 323 (369)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 323 (369)
.+...++++.+...+....+.. +.+...+..+..++...|++++|+..|+++.+.. |.+..++..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6667777777777777766653 3356666777777777777777777777777665 4566677777777777777777
Q ss_pred HHHHHHhcccC
Q 036461 324 AWELFRSLPRG 334 (369)
Q Consensus 324 a~~~~~~~~~~ 334 (369)
|...|+++++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777777654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-12 Score=114.41 Aligned_cols=129 Identities=11% Similarity=0.082 Sum_probs=86.3
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC---hHHH
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF---VDKA 79 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a 79 (369)
-+..|++-+..+ |-|..+|..++..+.+.+.++.+..+|+++.... |.....|...+..-.+.++ ++.+
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-------P~~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-------PLMANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTC--CCCHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhhCCcchHHHH
Confidence 345566666665 6788888888888888888888888888888765 5667788888888777777 8888
Q ss_pred HHHHHHhHhCC-CCCCHHhHHHHHHHHHhcCCH--------HHHHHHHHHHHhc-CC-CCC-hhhHHHHHHH
Q 036461 80 KELFLKMKDEN-INPNVVTYNSLIHGFCYANDW--------NEAKCLFIEMMDQ-GV-QPN-VVSFNVIMNE 139 (369)
Q Consensus 80 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~ 139 (369)
..+|++..... .+|++..|...+....+.++. +...++|+..+.. |. .++ ...|...+..
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f 194 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHF 194 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 88888887752 136777777777655554432 2334566665542 44 333 3455555543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-13 Score=113.61 Aligned_cols=309 Identities=10% Similarity=-0.029 Sum_probs=215.3
Q ss_pred ccchhhHHHHHHHH--HhcCChHHHHHHHHHhHhC--CCC--CCHHhHHHHHHH--HHhcCCHHHHH---------HHHH
Q 036461 57 KPNTVTYTTIIDGL--CKEGFVDKAKELFLKMKDE--NIN--PNVVTYNSLIHG--FCYANDWNEAK---------CLFI 119 (369)
Q Consensus 57 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~~--~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~ 119 (369)
.|+..+-+.+-.-| ...+++++|.++++++.+. .+. ++...|..++.. ..-.+.+..+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45555555665555 7889999999999988653 222 233334444432 11112222222 5666
Q ss_pred HHHhcCCCCCh----hhHHHHHHHHHhCCChhHHHHHHHHHHHcCC-----CccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036461 120 EMMDQGVQPNV----VSFNVIMNELCKNGKMDEASRLLELMIQIGV-----RPNAFVYNTLMDGFCLTGRVNRAEELFVS 190 (369)
Q Consensus 120 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (369)
.+.....+.+. ..+......+...|++++|...++.+.+... +....++..+...+...|+++.|...+.+
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 65432111111 1233345567789999999999999886521 11356778899999999999999999998
Q ss_pred HHhc----CC-C-chHHHHHHHHHHHhhcCChHHHHHHHHHHHhC----CCC-CcHHhHHHHHHHHHhcccHHHHHHHHH
Q 036461 191 MESM----GC-K-HNVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIK-PDVVIYNTLFIGLFEIHQVERAFKLFD 259 (369)
Q Consensus 191 ~~~~----~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (369)
.... +. . ....++..+..+|...|++++|...+.+..+. +.. ....++..+..++...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8643 11 1 12557888999999999999999999998763 111 123467888999999999999999999
Q ss_pred HHHH-----cCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHcCCC---HHHHHHH
Q 036461 260 EMQR-----HGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY----ELDIRAYNCLIDGLCKSGR---LKIAWEL 327 (369)
Q Consensus 260 ~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~a~~~ 327 (369)
+..+ .. +....++..+...+.+.|++++|...+++...... +.....+..+...+...|+ +++|+..
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9876 43 33477888999999999999999999999986532 2223455666677778888 8888888
Q ss_pred HHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 328 FRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
+++... .+.....+..+...|...|++++|.+.|++..+
T Consensus 326 ~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 887432 122345677889999999999999999988653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-15 Score=121.01 Aligned_cols=245 Identities=13% Similarity=0.046 Sum_probs=116.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc------C
Q 036461 94 NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ-------GVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI------G 160 (369)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 160 (369)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...++.+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4456666777777777777777777776652 11223345556666666666777766666666543 1
Q ss_pred -CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CC-CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC---
Q 036461 161 -VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM------GC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSK--- 229 (369)
Q Consensus 161 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 229 (369)
.+....++..+...+...|++++|...++++... +. +....++..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223445555566666666666666666655432 11 112334444555555555555555555555442
Q ss_pred ---CCCC-cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--
Q 036461 230 ---GIKP-DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYEL-- 303 (369)
Q Consensus 230 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-- 303 (369)
+..| ...++..+...+...|++++|...++++.+.. ++.. + ....+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~--------~------------------~~~~~~~ 237 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HERE--------F------------------GSVDDEN 237 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHHH--------H------------------C------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhc--------C------------------CCCCcch
Confidence 1111 12234444444444444444444444444310 0000 0 00001
Q ss_pred -----CHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 304 -----DIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 304 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
....+..+...+...+.+.++...++...... +....++..+..+|.+.|++++|.++|++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11112222223334445555555555555431 2245567777777778888888887777654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.6e-15 Score=120.42 Aligned_cols=178 Identities=15% Similarity=0.090 Sum_probs=132.6
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCC-cccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-----
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG-VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE----- 89 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 89 (369)
+.+..++..+...+...|++++|+.+|+++.+...... ...+....++..+..++...|++++|+..++++...
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 34566889999999999999999999999987310000 002445678899999999999999999999998753
Q ss_pred -C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc-
Q 036461 90 -N-INPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ------GV-QPNVVSFNVIMNELCKNGKMDEASRLLELMIQI- 159 (369)
Q Consensus 90 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 159 (369)
+ .+....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|..+++.+.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 1234567888889999999999999999988764 11 123445677778888888888888888887764
Q ss_pred -----C-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036461 160 -----G-VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMES 193 (369)
Q Consensus 160 -----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (369)
+ .+....++..+..++...|++++|...++++..
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 122345677777888888888888888887764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-12 Score=111.89 Aligned_cols=358 Identities=11% Similarity=-0.005 Sum_probs=236.7
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC---hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCCh--
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGH---TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFV-- 76 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 76 (369)
.|+.+|+++... +|.+...|...+..-.+.|+ ++.+..+|++.....+ .+|++..|...+.-..+.++.
T Consensus 84 ~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~-----~~~sv~LW~~Yl~f~~~~~~~~~ 157 (679)
T 4e6h_A 84 QVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKEL-----GNNDLSLWLSYITYVRKKNDIIT 157 (679)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSS-----CCCCHHHHHHHHHHHHHHSCSTT
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHhccccc
Confidence 578899999987 57888899999999999999 9999999999998641 138888898888766655543
Q ss_pred ------HHHHHHHHHhHh-CCC-CC-CHHhHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 77 ------DKAKELFLKMKD-ENI-NP-NVVTYNSLIHGFCY---------ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 77 ------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
+...++|+.... -|. .+ +...|...+..... .++++.+..+|++++......-..+|.....
T Consensus 158 ~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~ 237 (679)
T 4e6h_A 158 GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ 237 (679)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344577877654 354 34 45677777765432 3346677778877764311111112211100
Q ss_pred ---H-----------------------HH-----------------------------------------------hCC-
Q 036461 139 ---E-----------------------LC-----------------------------------------------KNG- 144 (369)
Q Consensus 139 ---~-----------------------~~-----------------------------------------------~~~- 144 (369)
. +. ..+
T Consensus 238 fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 238 WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp HHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred HHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 0 00 000
Q ss_pred ------ChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHH-HHHHHHHhcCCCchHHHHHHHHHHHhhcCChH
Q 036461 145 ------KMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAE-ELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (369)
Q Consensus 145 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (369)
..+.+..+|++++..- +-....|...+..+...|+.++|. ++|++..... |.+...|...+....+.|+++
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHH
Confidence 0011223344444331 334555566666667778888886 8888887653 556666777788888889999
Q ss_pred HHHHHHHHHHhCCC---------CC------------cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 036461 218 GALSLYSEMLSKGI---------KP------------DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTF 276 (369)
Q Consensus 218 ~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 276 (369)
.|..+|+++..... .| ...+|...+....+.|+.+.|..+|.++.+.-.......|...
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~ 475 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 99999988876310 12 1235666777777788899999999988875112233444444
Q ss_pred HHHHHhC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCccc--CHHHHHHHHHHHHhc
Q 036461 277 IDGLCKN-GYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIA--DVVTYNIMIHALCAD 353 (369)
Q Consensus 277 ~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 353 (369)
+..-.+. ++.+.|..+|+...+. .+.+...+...+......|+.+.|..+|++.+.....+ ....|...+..-.+.
T Consensus 476 A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 476 AYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 4333344 4589999999988876 35567777788888888899999999999988764321 345788888888888
Q ss_pred CchHHHHHHHHHhhc
Q 036461 354 GKMDKARDLFLDMEA 368 (369)
Q Consensus 354 g~~~~A~~~~~~m~~ 368 (369)
|+.+.+.++.+++.+
T Consensus 555 G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 555 GSLNSVRTLEKRFFE 569 (679)
T ss_dssp CCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998888764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-13 Score=114.73 Aligned_cols=311 Identities=10% Similarity=-0.034 Sum_probs=215.9
Q ss_pred CcCHhHHHHHHHHH--HhcCChhHHHHHHHHHHcCCCCCCcccccc--hhhHHHHHHH--HHhcCChHHHH---------
Q 036461 16 EPNVFTYNTLINGL--CRTGHTIVALNLFEEMANGNGEFGVVCKPN--TVTYTTIIDG--LCKEGFVDKAK--------- 80 (369)
Q Consensus 16 ~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~~~~~~~~~a~--------- 80 (369)
.|+..+-+.+-..| ...+++++|..+++++.+.... ...| ...|..++.. ..-.+....+.
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~----~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~ 82 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQ----MEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT 82 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGG----BCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH----hcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchH
Confidence 46666666666666 8899999999999988664311 1122 3333333332 11122233333
Q ss_pred HHHHHhHhCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC----ChhhHHHHHHHHHhCCChhHHHH
Q 036461 81 ELFLKMKDENINPNV----VTYNSLIHGFCYANDWNEAKCLFIEMMDQGV-QP----NVVSFNVIMNELCKNGKMDEASR 151 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~ 151 (369)
+.++.+.....+.+. ..+......+...|++++|...|++...... .+ ...++..+..++...|+++.|..
T Consensus 83 ~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~ 162 (378)
T 3q15_A 83 ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY 162 (378)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 666665432111111 1233455667889999999999999876411 12 24467888899999999999999
Q ss_pred HHHHHHHcC----C-C-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCC-chHHHHHHHHHHHhhcCChHHHH
Q 036461 152 LLELMIQIG----V-R-PNAFVYNTLMDGFCLTGRVNRAEELFVSMESM----GCK-HNVFSYSILINGYCKNKEIEGAL 220 (369)
Q Consensus 152 ~~~~~~~~~----~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~ 220 (369)
.+++..+.. . . ....++..+..+|...|++++|.+.+.+.... +.+ ....++..+..+|...|++++|.
T Consensus 163 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 163 HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 999887641 1 1 13557788999999999999999999988653 111 12456788999999999999999
Q ss_pred HHHHHHHh-----CCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC----CCcCHHHHHHHHHHHHhCCC---HHH
Q 036461 221 SLYSEMLS-----KGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG----VAADTWAYRTFIDGLCKNGY---IVE 288 (369)
Q Consensus 221 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~ 288 (369)
..+++..+ ..+. ...++..+...+...|++++|...+++..+.. .+.....+..+...+...++ +.+
T Consensus 243 ~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 243 EHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999987 4333 36778889999999999999999999988642 12223456666677778888 777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 289 AVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
|+..++... ..+.....+..+...|...|++++|...|++..+
T Consensus 322 al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 322 LLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777632 1122345667889999999999999999998764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-12 Score=108.79 Aligned_cols=299 Identities=13% Similarity=0.012 Sum_probs=200.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCh----h
Q 036461 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV----TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ-PNV----V 131 (369)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~ 131 (369)
.........+...|++++|...+++........+.. +++.+...+...|++++|...+++....... ++. .
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344555667778999999999999987753222222 4566778888899999999999988653111 111 2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHc----CCC--c-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--c--hH
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQI----GVR--P-NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCK--H--NV 200 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~ 200 (369)
++..+...+...|++++|...++...+. +.. | ....+..+...+...|++++|...+++....... + ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3556777888999999999999888764 211 2 3445667788889999999999999988654311 1 23
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc--HHhHH----HHHHHHHhcccHHHHHHHHHHHHHcCCCc---CHH
Q 036461 201 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD--VVIYN----TLFIGLFEIHQVERAFKLFDEMQRHGVAA---DTW 271 (369)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ 271 (369)
.++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 4677788888899999999999998875421111 11111 23344678899999999988876543211 123
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHH
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRIL----KYELDI-RAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIM 346 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 346 (369)
.+..+...+...|++++|...++..... +.+++. .++..+..++...|+.++|...+++...... . ...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~ 328 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGF 328 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccH
Confidence 4567778888899999999998887643 211122 3566677788888999999999988876311 1 112
Q ss_pred HHHHHhcCchHHHHHHHHHhh
Q 036461 347 IHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 347 ~~~~~~~g~~~~A~~~~~~m~ 367 (369)
...+...| +....+++++.
T Consensus 329 ~~~~~~~g--~~~~~ll~~~~ 347 (373)
T 1hz4_A 329 ISHFVIEG--EAMAQQLRQLI 347 (373)
T ss_dssp CHHHHTTH--HHHHHHHHHHH
T ss_pred HHHHHHcc--HHHHHHHHHHH
Confidence 23444444 45555555543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-12 Score=107.03 Aligned_cols=269 Identities=11% Similarity=0.001 Sum_probs=151.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhCCChhHHHHHHHHHHHcCC---Cc--cHHHHH
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVV----SFNVIMNELCKNGKMDEASRLLELMIQIGV---RP--NAFVYN 169 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~ 169 (369)
......+...|++++|...+++........+.. ++..+...+...|++++|...+++..+... .+ ...++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445566777777777777766543221211 344555666677777777777776654310 11 122345
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc----CCC--c-hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCC--C--cHHhH
Q 036461 170 TLMDGFCLTGRVNRAEELFVSMESM----GCK--H-NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK--P--DVVIY 238 (369)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~ 238 (369)
.+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 5666677777777777777766432 111 2 2344555666677777777777777776653211 1 12345
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHcCCCc-C-HHHHH----HHHHHHHhCCCHHHHHHHHHHHHHcCCCC---CHHHHH
Q 036461 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAA-D-TWAYR----TFIDGLCKNGYIVEAVELFRTLRILKYEL---DIRAYN 309 (369)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~ 309 (369)
..+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...+++.......+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 566666777777777777777665421111 1 11111 22234566777777777777665432111 122445
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcccC----CcccCH-HHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 310 CLIDGLCKSGRLKIAWELFRSLPRG----VLIADV-VTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 310 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
.+...+...|++++|...+++.... +..++. ..+..+..++...|++++|...+++..
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666777777777777777665432 111122 255556666777777777777766543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-13 Score=121.95 Aligned_cols=168 Identities=11% Similarity=0.051 Sum_probs=150.0
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
|-+..+|+.+..++.+.|++++|+..|++..+.+ |.+..++..+..+|.+.|++++|++.|++..+.. +-+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~ 77 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFA 77 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 5567799999999999999999999999999976 5568899999999999999999999999998863 3468
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF 175 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (369)
..|..+..++...|++++|++.|++.++... -+...|..+..++...|++++|+..|+++++.. +-+...+..+..++
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHH
Confidence 8999999999999999999999999998743 367889999999999999999999999999885 44788899999999
Q ss_pred HhcCChHHHHHHHHHHHh
Q 036461 176 CLTGRVNRAEELFVSMES 193 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~ 193 (369)
...|++++|.+.++++.+
T Consensus 156 ~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHTTCCTTHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 999999999999988754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-13 Score=121.62 Aligned_cols=167 Identities=20% Similarity=0.076 Sum_probs=125.3
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 036461 163 PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 242 (369)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (369)
-+..+++.+..++.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++++|+..|++.++.+.. +...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 346677778888888888888888888877764 455677777888888888888888888887776433 566777777
Q ss_pred HHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 036461 243 IGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (369)
.++...|++++|+..|++.++.. +-+...+..+..+|...|++++|+..|+++.+.. +.+...+..++.++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 88888888888888888777753 3356777777788888888888888888877765 456677777777888888888
Q ss_pred HHHHHHHhccc
Q 036461 323 IAWELFRSLPR 333 (369)
Q Consensus 323 ~a~~~~~~~~~ 333 (369)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88777777665
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-12 Score=101.18 Aligned_cols=208 Identities=11% Similarity=0.023 Sum_probs=158.8
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
+.++..|......+...|++++|+..|++..+.. .+++...+..+..++...|++++|++.|++..+.. +.+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 76 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT------NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLA 76 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc------CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchH
Confidence 3567889999999999999999999999999876 22778888889999999999999999999999863 3467
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc--cHH
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV-------VSFNVIMNELCKNGKMDEASRLLELMIQIGVRP--NAF 166 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~ 166 (369)
..|..+..++...|++++|...+++..+..+ .+. ..|..+...+...|++++|...|+.+.+.. +. +..
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 154 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTD 154 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHH
Confidence 8899999999999999999999999988642 244 457778888999999999999999998864 33 356
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 036461 167 VYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241 (369)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (369)
.+..+..++...| ...++.+...+ ..+...+.... ....+.+++|...+++..+..+. +..+...+
T Consensus 155 ~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 155 ALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 7777777776544 34455555443 23333443333 33456789999999999987433 34444433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.56 E-value=9.3e-13 Score=98.44 Aligned_cols=164 Identities=17% Similarity=0.148 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHH
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN 99 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (369)
..|..+...+...|++++|+..++++.... +.+...+..+..++...|++++|...++++.+.. +.+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 80 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 345556666666666666666666666544 3445566666666666666666666666665542 33555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (369)
.+...+...|++++|...++++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcC
Confidence 66666666666666666666665542 2244455555555666666666666666555543 234455555555555555
Q ss_pred ChHHHHHHHHHHHh
Q 036461 180 RVNRAEELFVSMES 193 (369)
Q Consensus 180 ~~~~a~~~~~~~~~ 193 (369)
++++|...++.+..
T Consensus 159 ~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 159 RHEEALPHFKKANE 172 (186)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-12 Score=100.08 Aligned_cols=210 Identities=12% Similarity=-0.029 Sum_probs=162.6
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 036461 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI 136 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (369)
+.|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|+..+++.....+ .+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHH
Confidence 3567889999999999999999999999998875436888888899999999999999999999998743 366788899
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--hHHHHHHHH
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNA-------FVYNTLMDGFCLTGRVNRAEELFVSMESMGCKH--NVFSYSILI 207 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 207 (369)
..++...|++++|...++...+.. +.+. ..+..+...+...|++++|++.|+++.+.. +. +...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 999999999999999999999875 3344 557888889999999999999999998874 44 467788888
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 036461 208 NGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFID 278 (369)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 278 (369)
.++...| ...++++...+.. +...|.... ....+.+++|...+++..+.. +.+..+...+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~ 222 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 8876544 3445555554322 344444333 344677899999999999864 234555544443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-12 Score=96.95 Aligned_cols=163 Identities=15% Similarity=0.110 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 036461 167 VYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF 246 (369)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (369)
.+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34445555555566666666555554432 33445555555555556666666666655555422 24445555555555
Q ss_pred hcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 036461 247 EIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWE 326 (369)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 326 (369)
..|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.... +.+..++..++..+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 5666666666666555542 2345555555566666666666666666655543 3345555556666666666666666
Q ss_pred HHHhccc
Q 036461 327 LFRSLPR 333 (369)
Q Consensus 327 ~~~~~~~ 333 (369)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-13 Score=107.24 Aligned_cols=227 Identities=11% Similarity=-0.033 Sum_probs=162.7
Q ss_pred HhCCChhHHHHHHHHHHHc-------CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------C-CCchHHHHHHH
Q 036461 141 CKNGKMDEASRLLELMIQI-------GVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM------G-CKHNVFSYSIL 206 (369)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 206 (369)
...|++++|...+++..+. ..+....++..+...+...|++++|...++++... + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888777653 22345677888999999999999999999998754 2 13346678899
Q ss_pred HHHHhhcCChHHHHHHHHHHHhC------CC-CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc------C-CCcCHHH
Q 036461 207 INGYCKNKEIEGALSLYSEMLSK------GI-KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH------G-VAADTWA 272 (369)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 272 (369)
...+...|++++|...+.++... .. +....++..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998874 11 223567888999999999999999999998764 1 1223567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc-------CC-CCCHHHHHHHHHHHHcCCC------HHHHHHHHHhcccCCccc
Q 036461 273 YRTFIDGLCKNGYIVEAVELFRTLRIL-------KY-ELDIRAYNCLIDGLCKSGR------LKIAWELFRSLPRGVLIA 338 (369)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~-~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~ 338 (369)
+..+..++...|++++|...++++... .. +.....+..+...+...+. +..+...++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888999999999999999999998764 11 1223344444444443333 34444444444332 223
Q ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 339 DVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 339 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
...++..+..+|...|++++|.++|++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788899999999999999999998764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-11 Score=98.06 Aligned_cols=234 Identities=12% Similarity=-0.004 Sum_probs=155.9
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc--C-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHH
Q 036461 78 KAKELFLKMKDENINPNVVTYNSLIHGFCYA--N-DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLE 154 (369)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 154 (369)
+|.+++.+..+. .++....| .+ + +. + ++++|...|.+. ...|...|++++|...|.
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KL---F-SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hh---c-CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 466666666554 23222222 22 1 22 2 477777777765 335667888888888888
Q ss_pred HHHHc----CCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---Cc--hHHHHHHHHHHHhhc-CChHHHHHHH
Q 036461 155 LMIQI----GVRPN-AFVYNTLMDGFCLTGRVNRAEELFVSMESMGC---KH--NVFSYSILINGYCKN-KEIEGALSLY 223 (369)
Q Consensus 155 ~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~ 223 (369)
+..+. |.++. ..+++.+..+|...|++++|+..+++...... .+ ...++..+..+|... |++++|+..|
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 77654 22222 46778888888888999988888888764310 11 134677888888886 9999999999
Q ss_pred HHHHhCCCCC-c----HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCH------HHHHHHHHHHHhCCCHHHHHHH
Q 036461 224 SEMLSKGIKP-D----VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT------WAYRTFIDGLCKNGYIVEAVEL 292 (369)
Q Consensus 224 ~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~ 292 (369)
++..+..... + ..++..+...+...|++++|...+++..+....... ..+..+..++...|++++|...
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8887642110 1 346778888888999999999999988875432221 2466777888889999999999
Q ss_pred HHHHHHcCCCCCH------HHHHHHHHHHH--cCCCHHHHHHHHHhcccC
Q 036461 293 FRTLRILKYELDI------RAYNCLIDGLC--KSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 293 ~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 334 (369)
|++..... |+. ..+..++.++. ..+++++|+..|+++...
T Consensus 222 ~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 222 LQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 98887542 221 23444556664 456788899998888764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-12 Score=104.50 Aligned_cols=234 Identities=13% Similarity=0.006 Sum_probs=160.9
Q ss_pred HhcCChhHHHHHHHHHHcCCCCCC-cccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC------C-CCCCHHhHHHH
Q 036461 30 CRTGHTIVALNLFEEMANGNGEFG-VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE------N-INPNVVTYNSL 101 (369)
Q Consensus 30 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 101 (369)
...|++++|+..|++..+...... ...+....++..+..++...|++++|+..++++.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 356777777777776665210000 002345778999999999999999999999998753 1 12345678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc------C-CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc------C-CCccHHH
Q 036461 102 IHGFCYANDWNEAKCLFIEMMDQ------G-VQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI------G-VRPNAFV 167 (369)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 167 (369)
..++...|++++|...+++.... . .+....++..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1224567888899999999999999999998875 1 2234667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHhhcCChHHH------HHHHHHHHhCCCCC
Q 036461 168 YNTLMDGFCLTGRVNRAEELFVSMESMG--------CKHNVFSYSILINGYCKNKEIEGA------LSLYSEMLSKGIKP 233 (369)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a------~~~~~~~~~~~~~~ 233 (369)
+..+..++...|++++|...++++.... .......+..+...+...+....+ ...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 8889999999999999999999987531 112223344444333333332222 222222111 1122
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
...++..+...+...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999988753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-11 Score=99.58 Aligned_cols=234 Identities=12% Similarity=0.023 Sum_probs=166.9
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhC--C-ChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 036461 113 EAKCLFIEMMDQGVQPNVVSFNVIMNELCKN--G-KMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFV 189 (369)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (369)
+|.+++.+..+. .+++...| .+ .+. + ++++|...|+.. +..|...|++++|...|.
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 567777777665 23222223 22 232 2 488888888776 446778999999999999
Q ss_pred HHHhc----CCCc-hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC---CC--cHHhHHHHHHHHHhc-ccHHHHHHHH
Q 036461 190 SMESM----GCKH-NVFSYSILINGYCKNKEIEGALSLYSEMLSKGI---KP--DVVIYNTLFIGLFEI-HQVERAFKLF 258 (369)
Q Consensus 190 ~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~ 258 (369)
+.... +-++ ...+|..+..+|...|++++|+..+++..+... .+ ...++..+...|... |++++|+..+
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 88653 2122 256889999999999999999999999876411 11 135788889999996 9999999999
Q ss_pred HHHHHcCCCc-C----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHcCCCHHHHHHH
Q 036461 259 DEMQRHGVAA-D----TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDI------RAYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 259 ~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~ 327 (369)
++..+..... + ..++..+...+...|++++|+..|+++......... ..+..++.++...|++++|...
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9987642111 1 356788899999999999999999999986432221 1567788899999999999999
Q ss_pred HHhcccCCcc-cC---HHHHHHHHHHHH--hcCchHHHHHHHHHhh
Q 036461 328 FRSLPRGVLI-AD---VVTYNIMIHALC--ADGKMDKARDLFLDME 367 (369)
Q Consensus 328 ~~~~~~~~~~-~~---~~~~~~l~~~~~--~~g~~~~A~~~~~~m~ 367 (369)
|++..+.... ++ ...+..++.++. ..+++++|++.|+++.
T Consensus 222 ~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 9999874211 11 123445566664 4577999999887653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-10 Score=90.31 Aligned_cols=245 Identities=11% Similarity=0.047 Sum_probs=137.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHH
Q 036461 26 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF 105 (369)
Q Consensus 26 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (369)
++-..-.|++..++.-..++.. .........+.+++...|++... ....|....+..+...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---------~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~ 81 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---------VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL 81 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---------CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---------cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh
Confidence 3455566777777763322211 11122333445667777766531 11223333333333332
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCChHHH
Q 036461 106 CYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGV-RPNAFVYNTLMDGFCLTGRVNRA 184 (369)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 184 (369)
..+ |+..|+++...+ .++..++..+..++...|++++|++++...+..+. .-+...+..++..+.+.|+.+.|
T Consensus 82 -~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A 155 (310)
T 3mv2_B 82 -DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTA 155 (310)
T ss_dssp -TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred -ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHH
Confidence 222 666677666554 34455555677777777777777777777765542 13556666777777777777777
Q ss_pred HHHHHHHHhcCCCc-----hHHHHHHHHHHH--hhcC--ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHH
Q 036461 185 EELFVSMESMGCKH-----NVFSYSILINGY--CKNK--EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF 255 (369)
Q Consensus 185 ~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (369)
.+.++.+.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.
T Consensus 156 ~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 156 STIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHH
Confidence 7777777665 34 244444444442 2223 777777777777654 233222233333677777777777
Q ss_pred HHHHHHHHcC---------CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 256 KLFDEMQRHG---------VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 256 ~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
..++.+.+.. -+.++.++..++......|+ +|.++++++.+..
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 7777654420 02345555455555555565 6677777777653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-11 Score=95.89 Aligned_cols=213 Identities=8% Similarity=-0.080 Sum_probs=139.4
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc---hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCC-
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN---TVTYTTIIDGLCKEGFVDKAKELFLKMKDENI- 91 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 91 (369)
+.++..+..+...+.+.|++++|+..|+++.... |.+ ...+..+..++.+.|++++|+..|+++.+...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-------RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence 4567788888889999999999999999999876 233 67888899999999999999999999987521
Q ss_pred -CCCHHhHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 036461 92 -NPNVVTYNSLIHGFCY--------ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVR 162 (369)
Q Consensus 92 -~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (369)
+.....+..+..++.. .|++++|...|++++...+. +......+. .+..+...
T Consensus 85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~--- 146 (261)
T 3qky_A 85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK--- 146 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH---
T ss_pred CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH---
Confidence 1234567778888888 89999999999998876321 222221111 11111100
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhhc----------CChHHHHHHHHHHHhCC
Q 036461 163 PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCK--HNVFSYSILINGYCKN----------KEIEGALSLYSEMLSKG 230 (369)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~ 230 (369)
....+..+..++...|++++|+..|+.+...... .....+..+..+|... |++++|...++++.+..
T Consensus 147 -~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 147 -LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 1122455667777778888888888777665311 1344566666666655 77778888888777753
Q ss_pred CCCc--HHhHHHHHHHHHhcccHHHH
Q 036461 231 IKPD--VVIYNTLFIGLFEIHQVERA 254 (369)
Q Consensus 231 ~~~~--~~~~~~l~~~~~~~~~~~~a 254 (369)
+... ......+...+...++++.+
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 2211 22344444555555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-10 Score=90.51 Aligned_cols=244 Identities=10% Similarity=0.025 Sum_probs=170.3
Q ss_pred HHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCh
Q 036461 67 IDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKM 146 (369)
Q Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (369)
++-..-.|++..++.-..++.. .. ....-..+.++|...|++... ....|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~--~~-~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK--VT-DNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC--CC-CHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc--cc-hHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc--
Confidence 4445567999998884433322 12 223334456888888877642 122334334444433 33322
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CchHHHHHHHHHHHhhcCChHHHHHHHHH
Q 036461 147 DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGC-KHNVFSYSILINGYCKNKEIEGALSLYSE 225 (369)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (369)
++..+++..+.+ +++..++..+..++...|++++|++++.+....+. ..+...+...+..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677888777665 45566667888999999999999999999876652 25778888999999999999999999999
Q ss_pred HHhCCCCC-----cHHhHHHHHHHH--Hhcc--cHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036461 226 MLSKGIKP-----DVVIYNTLFIGL--FEIH--QVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTL 296 (369)
Q Consensus 226 ~~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (369)
|.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+...++.++...|++++|...++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9885 45 355666666663 3334 899999999998765 355333344444899999999999999977
Q ss_pred HHcC---------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 297 RILK---------YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 297 ~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.+.. -+.++.++..++......|+ +|.++++++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 6431 14577777677777777787 888999999885
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-11 Score=91.78 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=58.6
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHH----------------HHHHHHhcCChHHHHH
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTT----------------IIDGLCKEGFVDKAKE 81 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~ 81 (369)
++..+......+.+.|++++|+..|+++...+ |.+...|.. +..++.+.|++++|+.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-------IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555666778889999999999999999876 334555555 4444455555555555
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
.|++..+.. |.+...+..+..++...|++++|...|++.++.
T Consensus 76 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 76 FYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555544431 224444444444555555555555555554443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-09 Score=86.73 Aligned_cols=218 Identities=11% Similarity=0.002 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--ChhHHHHHHHHHHHcCCCccHHHHHHHHHHH----Hhc---CCh
Q 036461 111 WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG--KMDEASRLLELMIQIGVRPNAFVYNTLMDGF----CLT---GRV 181 (369)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 181 (369)
.++|+.++++++...+. +..+|+.-..++...+ ++++++..++.++.... -+..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCH
Confidence 35666666666655322 4445555555555555 66666666666666542 2444444433333 333 556
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChH--HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc------HHH
Q 036461 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIE--GALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ------VER 253 (369)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 253 (369)
++++.+++.+.... +.+..+|+.-..++.+.|.++ ++++.++++.+.++. +...|+.-...+...+. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 66666666665554 445555555555555555555 666666666655433 44455444444444443 555
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 036461 254 AFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE-AVELFRTLRILK--YELDIRAYNCLIDGLCKSGRLKIAWELFRS 330 (369)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 330 (369)
+++.+..++... +-|...|+.....+.+.|+... +..+..++...+ -+.++..+..++.+|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 555555555443 2345555555555555554222 333444433321 122444555555555555555555555555
Q ss_pred ccc
Q 036461 331 LPR 333 (369)
Q Consensus 331 ~~~ 333 (369)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-10 Score=88.40 Aligned_cols=176 Identities=11% Similarity=-0.023 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC----ChH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG----FVD 77 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~ 77 (369)
+|++.|++..+.| ++.++..+...+...+++++|+..|++..+.+ ++..+..|...|.. + +++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHc-CCCCCCHH
Confidence 5777777777754 67777778888888888888888888877644 45667777777776 5 788
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHh----CCChhH
Q 036461 78 KAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDWNEAKCLFIEMMDQGVQ-PNVVSFNVIMNELCK----NGKMDE 148 (369)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~ 148 (369)
+|++.|++..+.| ++..+..|...|.. .+++++|+.+|++..+.|.. .+...+..+...|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 8888888877654 56667777777766 67788888888877766421 015566667777766 667777
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhcC
Q 036461 149 ASRLLELMIQIGVRPNAFVYNTLMDGFCLT-G-----RVNRAEELFVSMESMG 195 (369)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 195 (369)
|..+|+...+.+ .+...+..+..+|... | ++++|..+|++..+.|
T Consensus 148 A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777777777651 2333555566666543 2 6777777777776665
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-11 Score=111.00 Aligned_cols=174 Identities=10% Similarity=-0.013 Sum_probs=147.7
Q ss_pred HhcCChhHHHHHHHHHH--------cCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHH
Q 036461 30 CRTGHTIVALNLFEEMA--------NGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL 101 (369)
Q Consensus 30 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (369)
...|++++|++.++++. +.. +.+...+..+..++...|++++|++.|+++.+.+ +.+...|..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-------SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHH
Confidence 78899999999999998 544 5567889999999999999999999999998763 4478899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 036461 102 IHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181 (369)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (369)
..++...|++++|...|++..+... -+...+..+..++...|++++ ...|+++.+.+ +.+...+..+..++.+.|++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999998743 367788899999999999999 99999999876 44778899999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC
Q 036461 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (369)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (369)
++|.+.|+++.+.+ +.+...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99999999998775 4556778778888766554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.5e-11 Score=92.81 Aligned_cols=187 Identities=10% Similarity=0.011 Sum_probs=94.1
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CChhh
Q 036461 58 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN---VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ--PNVVS 132 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 132 (369)
.++..+..+...+.+.|++++|+..|+++.+.. |.+ ...+..+..++.+.|++++|...|+++++..+. .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345556666666666667777777766666542 212 455566666666666666666666666654211 11233
Q ss_pred HHHHHHHHHh--------CCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHH
Q 036461 133 FNVIMNELCK--------NGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYS 204 (369)
Q Consensus 133 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 204 (369)
+..+..++.. .|++++|...|+.+.+.... +......+. .+..+... ....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHHH
Confidence 4445555555 55566666666555554211 111111110 00000000 011134
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCC--cHHhHHHHHHHHHhc----------ccHHHHHHHHHHHHHc
Q 036461 205 ILINGYCKNKEIEGALSLYSEMLSKGIKP--DVVIYNTLFIGLFEI----------HQVERAFKLFDEMQRH 264 (369)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 264 (369)
.+...|...|++++|+..|+++++..+.. ....+..+..++... |++++|...++.+.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 45556666666666666666666542211 223445555555544 5556666666655553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-09 Score=91.18 Aligned_cols=342 Identities=11% Similarity=0.018 Sum_probs=217.7
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC-hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHH----hcCCh
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGH-TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLC----KEGFV 76 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~ 76 (369)
.|..+|++.+.. .|+...|...+....+.++ .+....+|+.+...-+. -+.+...|...+..+. ..++.
T Consensus 32 ~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~----d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 32 SLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN----YWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp HHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT----CTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred HHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC----CcccHHHHHHHHHHHHhchhhhHHH
Confidence 578888888875 5799999999998888774 45677888887764210 1346678888887654 24678
Q ss_pred HHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh-------------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC
Q 036461 77 DKAKELFLKMKDENINPNVVTYNSLIHGFCY-------------ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKN 143 (369)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (369)
+.+..+|+++.......-...|......-.. .+.+..|..+++.+...-...+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 8999999999884222112233322221111 122333444444443210011333555544432221
Q ss_pred --CC-----hhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCh
Q 036461 144 --GK-----MDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (369)
Q Consensus 144 --~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (369)
+- .+.+..+|++++... +.+...|...+..+.+.|+.+.|..++++.... |.+...+... ....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y----~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYY----GLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHH----HHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHH----Hhhcch
Confidence 11 345678899988864 556788888888889999999999999999887 4444433322 221111
Q ss_pred HHHHHHHHHHHhCC---------C---CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-C
Q 036461 217 EGALSLYSEMLSKG---------I---KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK-N 283 (369)
Q Consensus 217 ~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 283 (369)
++. ++.+.+.- . ......|...+....+.++.+.|..+|.++ +. ...+...|...+..-.. .
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHC
Confidence 111 22222210 0 111245666666666788899999999999 32 22344555433332222 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHH
Q 036461 284 GYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLF 363 (369)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (369)
++.+.|..+|+...+.- +.++..+...+....+.|+.+.|..+|+++.+ ....|...+..-...|+.+.+.+++
T Consensus 334 ~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47999999999998753 34556677778888889999999999999843 5778888888888889999999988
Q ss_pred HHhh
Q 036461 364 LDME 367 (369)
Q Consensus 364 ~~m~ 367 (369)
++..
T Consensus 408 ~~~~ 411 (493)
T 2uy1_A 408 DQKM 411 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-11 Score=110.12 Aligned_cols=184 Identities=9% Similarity=-0.047 Sum_probs=141.2
Q ss_pred HhcCChHHHHHHHHHHH--------hcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 036461 176 CLTGRVNRAEELFVSME--------SMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE 247 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (369)
...|++++|++.++++. ... +.+...+..+..++...|++++|+..|+++.+.+.. +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67888999999988887 443 456677888888888899999999999988886433 66788888888888
Q ss_pred cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 036461 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 327 (369)
.|++++|...|+++.+.. +.+...+..+..++...|++++ ...|+++.+.+ +.+...+..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998888764 3356778888888888999999 88998888776 56778888888899999999999999
Q ss_pred HHhcccCCcccC-HHHHHHHHHHHHhcCc--------hHHHHHHHHHh
Q 036461 328 FRSLPRGVLIAD-VVTYNIMIHALCADGK--------MDKARDLFLDM 366 (369)
Q Consensus 328 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~m 366 (369)
|+++.+. .|+ ...+..+..++...|+ +++|.+.++++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9988875 343 5567677777655443 55666655443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-10 Score=88.82 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=35.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 036461 171 LMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF 246 (369)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (369)
+..++.+.|++++|+..|++..+.. |.+...+..+..++...|++++|...|+++++..+. +..++..+..++.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 4445555555555555555554443 334444555555555555555555555555544222 3344444444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-09 Score=84.62 Aligned_cols=175 Identities=9% Similarity=-0.038 Sum_probs=111.0
Q ss_pred HhcCC-hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC--ChHHHHHHHHHhHhCCCCCCHHhHHHHHHHH-
Q 036461 30 CRTGH-TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG--FVDKAKELFLKMKDENINPNVVTYNSLIHGF- 105 (369)
Q Consensus 30 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~- 105 (369)
.+.|. .++|+.+++.++..+ |.+..+|+.-..++...+ +++++++.++.+.... |-+..+|+.-...+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~ 114 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIG 114 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHH
Confidence 34444 457888888888876 455677888777777777 8888888888887753 33556666544444
Q ss_pred ---Hhc---CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChh--HHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 036461 106 ---CYA---NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMD--EASRLLELMIQIGVRPNAFVYNTLMDGFCL 177 (369)
Q Consensus 106 ---~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (369)
... +++++++.+++++.+...+ +..+|+.-..++.+.|.++ ++++.++.+.+... .|...|+.....+..
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHS
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 444 5677777777777766433 6666666666666667666 77777777776653 355666655555555
Q ss_pred cCC------hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC
Q 036461 178 TGR------VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (369)
Q Consensus 178 ~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (369)
.+. ++++++.++.+.... +.|...|+.....+.+.|+
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred ccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 554 555666665555544 4455555555555554444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-10 Score=81.77 Aligned_cols=130 Identities=15% Similarity=0.250 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
+|..+...+...|++++|+.+++++.+.. +.+...+..++..+...|++++|...++++...+ +.+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHH
Confidence 45666666777777777777777766654 3445666666666667777777777777666542 334556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
+...+...|++++|...++++.... +.+...+..+...+...|++++|...++.+.+.
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666666666666666666666543 224455555666666666666666666665543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-10 Score=86.72 Aligned_cols=176 Identities=15% Similarity=0.052 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcC----CHH
Q 036461 37 VALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN----DWN 112 (369)
Q Consensus 37 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~ 112 (369)
+|++.|++..+.+ ++..+..+...|...+++++|++.|++..+.| ++..+..|...|.. + +++
T Consensus 4 eA~~~~~~aa~~g---------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHTT---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHCC---------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHH
Confidence 3555555555533 45566666666666666666666666666543 45555555555555 4 566
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHh----cCChHH
Q 036461 113 EAKCLFIEMMDQGVQPNVVSFNVIMNELCK----NGKMDEASRLLELMIQIGVR-PNAFVYNTLMDGFCL----TGRVNR 183 (369)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~ 183 (369)
+|..+|++..+.| +...+..+...|.. .+++++|..+|++..+.+.. .++..+..|..+|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 6666666665543 44455555555554 55666666666666555421 014445555555555 555666
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhhc-C-----ChHHHHHHHHHHHhCC
Q 036461 184 AEELFVSMESMGCKHNVFSYSILINGYCKN-K-----EIEGALSLYSEMLSKG 230 (369)
Q Consensus 184 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 230 (369)
|...|++.... +.+...+..+...|... | +.++|...|++..+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66666665544 12233344444444332 1 5555555555555544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-11 Score=87.69 Aligned_cols=144 Identities=10% Similarity=0.001 Sum_probs=91.9
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 106 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (369)
..+...|++++|+..++...... +.++..+..+..+|.+.|++++|++.|++..+.. |.+..+|..+..+|.
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYE 76 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455667777777777766643 3345566677777777777777777777776652 336677777777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHH-HHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 036461 107 YANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRL-LELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (369)
..|++++|+..|++.++..+ -+..++..+..++.+.|+++++.+. ++.+.+.. |-++.+|......+...|+
T Consensus 77 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HcCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 77777777777777776532 2456666677777777776655544 46666653 3355566655555555543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-10 Score=93.45 Aligned_cols=163 Identities=14% Similarity=0.003 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH-HHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNV-IMN 138 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~ 138 (369)
...+..+...+...|++++|+..|+++.... |.+...+..+..++.+.|++++|...++++.... |+...... ...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 3444445555555555555555555554431 2244445555555555555555555555544332 22221111 112
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCch--HHHHHHHHHHHhhcCCh
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN--VFSYSILINGYCKNKEI 216 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 216 (369)
.+...++.+.|...+++..+.. +.+...+..+...+...|++++|...+.++.+.. +.+ ...+..++..+...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCCC
Confidence 2334444455555555555443 2344455555555555555555555555555442 111 34455555555555555
Q ss_pred HHHHHHHHHHH
Q 036461 217 EGALSLYSEML 227 (369)
Q Consensus 217 ~~a~~~~~~~~ 227 (369)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 55555554443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-10 Score=80.80 Aligned_cols=128 Identities=17% Similarity=0.226 Sum_probs=68.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 036461 203 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK 282 (369)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (369)
+..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|..+++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 444555555566666666666665554322 34445555555555556666666655555442 2234455555555555
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 283 NGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 283 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
.|++++|...++++.... +.+...+..++..+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555443 33444555555555555555555555555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.4e-11 Score=88.04 Aligned_cols=162 Identities=14% Similarity=0.094 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.+......+.+.|++++|+..|+++.+.+ |.+...+..+..++...|++++|+..++++.... |+...+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~ 78 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-------QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSL 78 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHH
Confidence 44555666667777777777777666544 4456666777777777777777777776665532 23333222
Q ss_pred HHHH-HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhc
Q 036461 101 LIHG-FCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRP-NAFVYNTLMDGFCLT 178 (369)
Q Consensus 101 l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 178 (369)
+... +...+....|...+++..+.. +.+...+..+..++...|++++|...|+.+.+....+ +...+..+..++...
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 2111 111122223455555555542 2244555555666666666666666666665543221 234555555666666
Q ss_pred CChHHHHHHHHHHH
Q 036461 179 GRVNRAEELFVSME 192 (369)
Q Consensus 179 ~~~~~a~~~~~~~~ 192 (369)
|+.++|...|++..
T Consensus 158 g~~~~A~~~y~~al 171 (176)
T 2r5s_A 158 GQGNAIASKYRRQL 171 (176)
T ss_dssp CSSCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 66666666555543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-11 Score=86.51 Aligned_cols=141 Identities=13% Similarity=-0.007 Sum_probs=64.9
Q ss_pred HhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHH
Q 036461 210 YCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEA 289 (369)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 289 (369)
+...|++++|+..+........ .+...+..+...|...|++++|+..+++.++.. +-+...+..+..+|...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 3344455555555554443211 122233444555555555555555555555442 22444555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH-HHhcccCCcccCHHHHHHHHHHHHhcC
Q 036461 290 VELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWEL-FRSLPRGVLIADVVTYNIMIHALCADG 354 (369)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 354 (369)
...|+++.+.. |.+..++..+...|.+.|++++|... ++++.+.. +-++.+|......+...|
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 55555555443 33444555555555555555443332 34444421 113444444444444444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-09 Score=90.93 Aligned_cols=313 Identities=10% Similarity=-0.060 Sum_probs=192.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC-hHHHHHHHHHhHhC-CC-CCCHHhHHHHHHHHH---
Q 036461 33 GHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF-VDKAKELFLKMKDE-NI-NPNVVTYNSLIHGFC--- 106 (369)
Q Consensus 33 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~--- 106 (369)
|+++.+..+|++....- |+...|...+.-..+.++ .+....+|+..... |. +.+...|...+..+.
T Consensus 28 ~~~e~~~~iferal~~~--------ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~ 99 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS--------YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIE 99 (493)
T ss_dssp TCHHHHHHHHHHHSTTC--------CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCS
T ss_pred CCHHHHHHHHHHHhccC--------CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhch
Confidence 88999999999999853 799999998888777663 46677888887763 42 346788888887654
Q ss_pred -hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-------------CCChhHHHHHHHHHHHcCCCccHHHHHHHH
Q 036461 107 -YANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK-------------NGKMDEASRLLELMIQIGVRPNAFVYNTLM 172 (369)
Q Consensus 107 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (369)
..++.+.+.++|++.+......-...|......-.. .+.+..|..+++.+...-...+...|...+
T Consensus 100 ~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~ 179 (493)
T 2uy1_A 100 DEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLI 179 (493)
T ss_dssp SHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 346788999999999874211111122222111100 112223344444443210011333555555
Q ss_pred HHHHhc--CC-----hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 036461 173 DGFCLT--GR-----VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGL 245 (369)
Q Consensus 173 ~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (369)
..-... |- .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.... +.+...+. .|
T Consensus 180 ~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y 252 (493)
T 2uy1_A 180 DLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YY 252 (493)
T ss_dssp HHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HH
T ss_pred HHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HH
Confidence 442221 11 345678898888764 566788888888889999999999999999987 32332222 22
Q ss_pred HhcccHHHHHHHHHHHHHcC------------CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036461 246 FEIHQVERAFKLFDEMQRHG------------VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLID 313 (369)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 313 (369)
......++. ++.+.+.- .......|...+....+.++.+.|..+|+++ ... +.+..+|...+.
T Consensus 253 ~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~ 327 (493)
T 2uy1_A 253 GLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAF 327 (493)
T ss_dssp HHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHH
T ss_pred HhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHH
Confidence 221111111 22222110 0111345666777777788899999999999 321 234455543333
Q ss_pred HHHc-CCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 314 GLCK-SGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 314 ~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
.-.. .++.+.|..+|+...+.. +-++..|...+....+.|+.+.|+.+|+++
T Consensus 328 lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 328 IEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222 336999999999988752 224566777888888899999999999875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-10 Score=91.25 Aligned_cols=165 Identities=12% Similarity=-0.024 Sum_probs=99.3
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHH-hHHH
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV-IYNT 240 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 240 (369)
+.+...+..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...++++.... |+.. ....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3344555566666677777777777777776654 4455666666777777777777777777666543 2322 2222
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcC
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELD--IRAYNCLIDGLCKS 318 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 318 (369)
....+...++.+.|...+++..+.. +.+...+..+...+...|++++|...|+++.... +.+ ...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHc
Confidence 2223445555666666666666553 3356666666666667777777777776666653 212 45566666666666
Q ss_pred CCHHHHHHHHHhc
Q 036461 319 GRLKIAWELFRSL 331 (369)
Q Consensus 319 g~~~~a~~~~~~~ 331 (369)
|+.++|...|++.
T Consensus 269 g~~~~a~~~~r~a 281 (287)
T 3qou_A 269 GTGDALASXYRRQ 281 (287)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 6666666666554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-11 Score=88.69 Aligned_cols=77 Identities=16% Similarity=0.049 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCccc-CHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 289 AVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIA-DVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
|...+++..... |.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|...|++.
T Consensus 93 a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 444555554443 3345555555555555555555555555555442221 2334555555555555555555555543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-09 Score=84.63 Aligned_cols=188 Identities=10% Similarity=-0.058 Sum_probs=129.1
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH--
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV-- 95 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 95 (369)
++..+..+...+.+.|++++|+..|+++....+. .+.....+..++.++.+.|++++|+..|+++.+.... +.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~ 77 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPF----GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNI 77 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcH
Confidence 4566777888899999999999999999986511 0112467888999999999999999999999875221 22
Q ss_pred -HhHHHHHHHHHh------------------cCCHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhCCChhHHHHHHHH
Q 036461 96 -VTYNSLIHGFCY------------------ANDWNEAKCLFIEMMDQGVQPNV-VSFNVIMNELCKNGKMDEASRLLEL 155 (369)
Q Consensus 96 -~~~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 155 (369)
..+..+..++.. .|++++|...|+++++.. |+. ..+...... ..+...
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~ 145 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDR 145 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHH
Confidence 244455555543 467788888888887653 322 222211110 000000
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCch---HHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 036461 156 MIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN---VFSYSILINGYCKNKEIEGALSLYSEMLSKGI 231 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (369)
+ ......+...+.+.|++++|+..|+++.+.. |.+ ...+..+..++.+.|+.++|...++.+...++
T Consensus 146 ~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 146 L--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp H--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred H--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 0 1112356778889999999999999998763 222 35678889999999999999999998888643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-10 Score=100.66 Aligned_cols=154 Identities=10% Similarity=-0.012 Sum_probs=119.6
Q ss_pred cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCH
Q 036461 32 TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDW 111 (369)
Q Consensus 32 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (369)
.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRH 73 (568)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 478899999999998876 5568899999999999999999999999998863 44788899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CChHHHHHHH
Q 036461 112 NEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT---GRVNRAEELF 188 (369)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~ 188 (369)
++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+
T Consensus 74 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 74 AEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 99999999998874 3367788999999999999999999999999875 44678888899999999 9999999999
Q ss_pred HHHHhcC
Q 036461 189 VSMESMG 195 (369)
Q Consensus 189 ~~~~~~~ 195 (369)
++..+.+
T Consensus 152 ~~al~~~ 158 (568)
T 2vsy_A 152 RAAVAQG 158 (568)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9998775
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.26 E-value=7.3e-10 Score=85.51 Aligned_cols=185 Identities=12% Similarity=-0.015 Sum_probs=111.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcH--HhHH
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGC--KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV--VIYN 239 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 239 (369)
+...+..+...+...|++++|+..|+++..... +.....+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345566677888999999999999999987631 112457788889999999999999999999986433211 2344
Q ss_pred HHHHHHHh------------------cccHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 240 TLFIGLFE------------------IHQVERAFKLFDEMQRHGVAAD-TWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 240 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
.+..++.. .|++++|...|+.+++.. |+ .......... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH----
Confidence 45555543 345666666666655542 22 1111100000 0000000
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCccc--CHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 301 YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIA--DVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
......+...|.+.|++++|...|+++++..... ....+..+..++.+.|++++|++.++.+..
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 0011234556777777888877777776642111 124566777777778888888777776643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-10 Score=90.89 Aligned_cols=225 Identities=9% Similarity=-0.033 Sum_probs=139.2
Q ss_pred cCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHH
Q 036461 73 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY-ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASR 151 (369)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (369)
.|++++|.+++++..+.. + . .+.+ .++++.|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~-~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-K-T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-C-C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-c-c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 466777777777766531 1 1 0222 46777777777654 346677888888888
Q ss_pred HHHHHHHcCC----C-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCc--hHHHHHHHHHHHhhcCChHHHHH
Q 036461 152 LLELMIQIGV----R-PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG---CKH--NVFSYSILINGYCKNKEIEGALS 221 (369)
Q Consensus 152 ~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~a~~ 221 (369)
.|.+..+... . .-..++..+..+|...|++++|+..+++..... ..+ ...++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8887765411 1 114467777888888888888888888775431 012 13466777777777 88888888
Q ss_pred HHHHHHhCCCC---C--cHHhHHHHHHHHHhcccHHHHHHHHHHHHHc----CCCcC-HHHHHHHHHHHHhCCCHHHHHH
Q 036461 222 LYSEMLSKGIK---P--DVVIYNTLFIGLFEIHQVERAFKLFDEMQRH----GVAAD-TWAYRTFIDGLCKNGYIVEAVE 291 (369)
Q Consensus 222 ~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 291 (369)
.|++....... + ...++..+...+...|++++|+..+++..+. +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88877763111 0 1345667777788888888888888777653 11111 1245555666677788888888
Q ss_pred HHHHHHHcCCCC-C---HHHHHHHHHHHHcCCCHHHHHH
Q 036461 292 LFRTLRILKYEL-D---IRAYNCLIDGLCKSGRLKIAWE 326 (369)
Q Consensus 292 ~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~a~~ 326 (369)
.|++.. ..... + ......++.++ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 888777 42110 1 12233444444 4566655555
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.1e-10 Score=90.36 Aligned_cols=227 Identities=11% Similarity=0.003 Sum_probs=141.2
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (369)
..|++++|.+++++..+.. +.. + +...++++.|...|.++ ...|...|+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-------~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~ 51 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-------KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQ 51 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-------CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHc-------ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCC
Confidence 3578889999999887643 111 0 11146677777776654 345666777
Q ss_pred HHHHHHHHHHHHhcCC---CC--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCC
Q 036461 111 WNEAKCLFIEMMDQGV---QP--NVVSFNVIMNELCKNGKMDEASRLLELMIQI----GVRP-NAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 111 ~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~ 180 (369)
+++|...|.+...... .+ -..+|..+..+|...|++++|+..|++..+. |-+. ...++..+..+|.. |+
T Consensus 52 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~ 130 (307)
T 2ifu_A 52 LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD 130 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC
Confidence 7777777776654310 00 1335666777777788888888888776543 2111 13566677777777 88
Q ss_pred hHHHHHHHHHHHhcCC---Cc--hHHHHHHHHHHHhhcCChHHHHHHHHHHHhC----CCCCc-HHhHHHHHHHHHhccc
Q 036461 181 VNRAEELFVSMESMGC---KH--NVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIKPD-VVIYNTLFIGLFEIHQ 250 (369)
Q Consensus 181 ~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~ 250 (369)
+++|+..+++...... .+ ...++..+...+...|++++|+..|++.... +..+. ...+..++.++...|+
T Consensus 131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Confidence 8888888887754310 11 1456777888888888888888888887763 11111 1255566667777788
Q ss_pred HHHHHHHHHHHHHcCCCc-C---HHHHHHHHHHHHhCCCHHHHHH
Q 036461 251 VERAFKLFDEMQRHGVAA-D---TWAYRTFIDGLCKNGYIVEAVE 291 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~a~~ 291 (369)
+++|...+++.. ..... + ......++.++ ..|+.+.+..
T Consensus 211 ~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 211 YVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 888888888877 42111 1 12334444444 4666655554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-08 Score=78.82 Aligned_cols=217 Identities=10% Similarity=0.038 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc-C-ChHHHHHHH
Q 036461 147 DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTG-RVNRAEELFVSMESMGCKHNVFSYSILINGYCKN-K-EIEGALSLY 223 (369)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~ 223 (369)
++|+++++.++..+ +-+..+|+.-..++...| .+++++.+++.+.... +-+..+|+.-..++.+. + ++++++.++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34444444444443 223334444444444444 2455555555554443 33344444333333333 3 445555555
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhcccHH--------HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC-------HHH
Q 036461 224 SEMLSKGIKPDVVIYNTLFIGLFEIHQVE--------RAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY-------IVE 288 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~ 288 (369)
+++.+...+ +...|+.-...+...+.++ +++..++++.+.++ -|...|+.....+.+.+. +++
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHH
Confidence 555544322 3344433333333333333 56666666655432 355555555555555554 566
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH--------------------HHHHHHHHhcccCC-----cccCHHHH
Q 036461 289 AVELFRTLRILKYELDIRAYNCLIDGLCKSGRL--------------------KIAWELFRSLPRGV-----LIADVVTY 343 (369)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~~~~~ 343 (369)
+++.++++.... +-|...|+.+-..+.+.|+. ........++.... ..+++..+
T Consensus 227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 666666666554 45666666655555555443 23333334443321 12466677
Q ss_pred HHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 344 NIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 344 ~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
..++..|...|+.++|.++++.+.+
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 7777777777777777777777653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.8e-10 Score=99.22 Aligned_cols=150 Identities=9% Similarity=-0.057 Sum_probs=122.0
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|++.|++..+.. +.+..+|..+...+.+.|++++|+..|++..+.+ +.+...+..+..++...|++++|.
T Consensus 6 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 6 PRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-------PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 47889999988874 5678899999999999999999999999999976 567889999999999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC---CChhHHHHHHHHHH
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKN---GKMDEASRLLELMI 157 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~ 157 (369)
+.+++..+.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999998863 4478899999999999999999999999998874 33677888899999999 99999999999998
Q ss_pred HcC
Q 036461 158 QIG 160 (369)
Q Consensus 158 ~~~ 160 (369)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 875
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-08 Score=78.73 Aligned_cols=184 Identities=9% Similarity=-0.044 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC-ChHHHHHHHHHhHhCCCCCCHHhHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG-FVDKAKELFLKMKDENINPNVVTYN 99 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (369)
++..+-....+.+..++|+++++.+...+ |.+..+|+.-..++...| .++++++.++.+.... +-+..+|+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~ 127 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWH 127 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 34444444455566678999999999877 556778888888888888 5999999999998874 34778888
Q ss_pred HHHHHHHhc-C-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChh--------HHHHHHHHHHHcCCCccHHHHH
Q 036461 100 SLIHGFCYA-N-DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMD--------EASRLLELMIQIGVRPNAFVYN 169 (369)
Q Consensus 100 ~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~ 169 (369)
.-..++... + ++++++.+++++.+...+ +..+|+.-..++.+.|.++ ++++.++.+++.. +.|...|+
T Consensus 128 hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~ 205 (349)
T 3q7a_A 128 HRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWG 205 (349)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 877777766 6 888999999999877533 6777776655555555555 7888888888775 34777777
Q ss_pred HHHHHHHhcCC-------hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC
Q 036461 170 TLMDGFCLTGR-------VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (369)
Q Consensus 170 ~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (369)
.....+.+.+. ++++++.++++.... +.|...|+.+-..+.+.|.
T Consensus 206 ~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 206 WRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 77777777665 567777777776664 5566666665555555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-08 Score=81.58 Aligned_cols=209 Identities=11% Similarity=0.027 Sum_probs=139.8
Q ss_pred HHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhH
Q 036461 8 MKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMK 87 (369)
Q Consensus 8 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 87 (369)
..+..-...|+..+...+...+.-.- ..++..-... ..+....+...+..+...|++++|...+++..
T Consensus 35 s~~e~g~~~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~-------~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l 102 (293)
T 3u3w_A 35 SRIESGAVYPSMDILQGIAAKLQIPI-----IHFYEVLIYS-------DIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHTTSCCCCHHHHHHHHHHHTCCT-----HHHHHTTTSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCcCH-----HHHhCCCCCC-------cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 33433334677777776666553211 1222221111 12335566677888888899999999999887
Q ss_pred hCCC-CCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 036461 88 DENI-NPNVV----TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ-PN----VVSFNVIMNELCKNGKMDEASRLLELMI 157 (369)
Q Consensus 88 ~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (369)
+... .|+.. .+..+...+...+++++|+..+++....... ++ ..+++.+..+|...|++++|...++.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 103 KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6433 33322 3445777777788999999999988874222 22 2257888888999999999999998887
Q ss_pred Hc-----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----C-CCchHHHHHHHHHHHhhcCC-hHHHHHHHHH
Q 036461 158 QI-----GVRP-NAFVYNTLMDGFCLTGRVNRAEELFVSMESM----G-CKHNVFSYSILINGYCKNKE-IEGALSLYSE 225 (369)
Q Consensus 158 ~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 225 (369)
+. +..+ ...++..+...|.+.|++++|...+++.... + ...-..++..+..++...|+ +++|...+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 41 1122 2347788888999999999999998887543 1 11225678888888988884 5899888888
Q ss_pred HHh
Q 036461 226 MLS 228 (369)
Q Consensus 226 ~~~ 228 (369)
...
T Consensus 263 Al~ 265 (293)
T 3u3w_A 263 ASF 265 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-09 Score=86.11 Aligned_cols=196 Identities=11% Similarity=-0.032 Sum_probs=117.0
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.+...+..+...+.+.|++++|+..|+++.... +.+...|..+..++.+.|++++|+..+++..+.. +.+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 73 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVK 73 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHH
Confidence 356677788888888888888888888888765 4567788888888888888888888888887753 34677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFC 176 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (369)
.+..+..++...|++++|...|++..+.... +...+...+....+. .... -+........+.+......+...
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~l-- 146 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTRL-- 146 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHHH--
Confidence 7888888888888888888888887664211 111111111111111 1111 11112222223333333333222
Q ss_pred hcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc-CChHHHHHHHHHHHh
Q 036461 177 LTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKN-KEIEGALSLYSEMLS 228 (369)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 228 (369)
..|+.++|.+.++...+.. +.+......+...+.+. +.+++|.++|.++.+
T Consensus 147 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 IAAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 2567777777776666553 23333333333333333 456666777766654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.10 E-value=8.4e-08 Score=77.16 Aligned_cols=199 Identities=9% Similarity=0.079 Sum_probs=141.8
Q ss_pred cccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh---HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCh-
Q 036461 56 CKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT---YNSLIHGFCYANDWNEAKCLFIEMMDQGV-QPNV- 130 (369)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~- 130 (369)
..|+..+...+...+.-. ++ .++.. ....+... +...+..+...|++++|..++++...... .|+.
T Consensus 42 ~~~~~~~l~~i~~~l~~~--~~---~~~~~----~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~ 112 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIP--II---HFYEV----LIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ 112 (293)
T ss_dssp CCCCHHHHHHHHHHHTCC--TH---HHHHT----TTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCHHHHHHHHHHhCcC--HH---HHhCC----CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH
Confidence 467777777777766432 11 12221 11222333 33446788899999999999999987532 1221
Q ss_pred ---hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-cc----HHHHHHHHHHHHhcCChHHHHHHHHHHHh----c-CCC
Q 036461 131 ---VSFNVIMNELCKNGKMDEASRLLELMIQIGVR-PN----AFVYNTLMDGFCLTGRVNRAEELFVSMES----M-GCK 197 (369)
Q Consensus 131 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~ 197 (369)
..+..+...+...+++++|+..++.+.+.... ++ ..+++.+..+|...|++++|...++++.+ . +..
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (293)
T 3u3w_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch
Confidence 13334677777888999999999999884322 22 34689999999999999999999999873 1 112
Q ss_pred c-hHHHHHHHHHHHhhcCChHHHHHHHHHHHhC----CCCC-cHHhHHHHHHHHHhcc-cHHHHHHHHHHHHH
Q 036461 198 H-NVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIKP-DVVIYNTLFIGLFEIH-QVERAFKLFDEMQR 263 (369)
Q Consensus 198 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 263 (369)
+ ...++..+..+|.+.|++++|...+++..+. +..+ -..++..+..++...| ++++|...+++...
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2 2347888999999999999999999988753 2222 2678889999999999 46999999988765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-09 Score=73.39 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHH
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN 99 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (369)
..+......+.+.|++++|+..|++..+.+ |.+..+|..+..++.+.|++++|+..|++.++.+ +.+...|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 355556666666666666666666666654 4455666666666666666666666666665542 23455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
.+..++...|++++|...|++.++.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6666666666666666666666654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-09 Score=86.25 Aligned_cols=95 Identities=14% Similarity=-0.009 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYC 211 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (369)
.+..+...+...|++++|...|+.+.+.. +.+...+..+..++.+.|++++|...++++.+.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444455555555555555554442 2244445555555555555555555555554443 333444555555555
Q ss_pred hcCChHHHHHHHHHHHh
Q 036461 212 KNKEIEGALSLYSEMLS 228 (369)
Q Consensus 212 ~~~~~~~a~~~~~~~~~ 228 (369)
..|++++|...|.+..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.5e-08 Score=78.25 Aligned_cols=164 Identities=12% Similarity=0.011 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CC--h
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV------VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ---PN--V 130 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 130 (369)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|+..+++....... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3344455555556666666555555443111 11 11222334444555555555555555432111 01 2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHc---C-CCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----C-Cch
Q 036461 131 VSFNVIMNELCKNGKMDEASRLLELMIQI---G-VRP--NAFVYNTLMDGFCLTGRVNRAEELFVSMESMG----C-KHN 199 (369)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~ 199 (369)
.+++.+...|...|++++|...++++.+. . ..+ ...++..+..+|...|++++|...+++..... . ..-
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 24444555555555555555555554421 0 000 11344445555555555555555555443221 0 001
Q ss_pred HHHHHHHHHHHhhcCChHHH-HHHHHHH
Q 036461 200 VFSYSILINGYCKNKEIEGA-LSLYSEM 226 (369)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 226 (369)
..++..+..+|...|++++| ...+++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 33444445555555555555 4434433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-08 Score=76.29 Aligned_cols=131 Identities=11% Similarity=-0.062 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 036461 165 AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIG 244 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (369)
...+..+...+...|++++|...+++.. .++..++..+..++...|++++|...+++...... .+...+..+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHH
Confidence 3445667788889999999999998874 45778888899999999999999999999888643 366788888899
Q ss_pred HHhcccHHHHHHHHHHHHHcCCCc---------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 245 LFEIHQVERAFKLFDEMQRHGVAA---------------DTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
+...|++++|...++.+.+..... ....+..+..++...|++++|...++++....
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999988753211 12677888888999999999999999988764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-08 Score=74.47 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 036461 202 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLC 281 (369)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 281 (369)
.+..+...+...|++++|...+++..+.... +...+..+..++...|++++|...+....+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444444555555555555555555543221 34444445555555555555555555544432 223444444555555
Q ss_pred hCCCHHHHHHHHHHHHHc
Q 036461 282 KNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~ 299 (369)
..|++++|...++++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh
Confidence 555555555555555443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-08 Score=75.57 Aligned_cols=93 Identities=12% Similarity=0.007 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELC 141 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (369)
.+..+...+...|++++|+..|++.. +|+...+..+..++...|++++|...|++..... +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34445555556666666666665553 3355556666666666666666666666655542 224445555555555
Q ss_pred hCCChhHHHHHHHHHHHc
Q 036461 142 KNGKMDEASRLLELMIQI 159 (369)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~ 159 (369)
..|++++|...++.+.+.
T Consensus 83 ~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHh
Confidence 555555555555555554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.7e-09 Score=71.71 Aligned_cols=100 Identities=12% Similarity=0.042 Sum_probs=57.7
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.+...|..+...+.+.|++++|+..|+++.... +.+...+..+..++...|++++|+..++++.+.. +.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 85 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIK 85 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchH
Confidence 344455666666666666666666666666544 3345556666666666666666666666655532 22455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
.+..+..++...|++++|...|++....
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5555556666666666666666655544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.8e-09 Score=75.38 Aligned_cols=101 Identities=14% Similarity=0.035 Sum_probs=67.8
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 036461 58 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIM 137 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (369)
.+...+..+...+.+.|++++|+..|+++.... |.+...|..+..++...|++++|+..|++.....+ .+...|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHH
Confidence 345566667777777777777777777776652 33566677777777777777777777777766532 2455666677
Q ss_pred HHHHhCCChhHHHHHHHHHHHcC
Q 036461 138 NELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
.++...|++++|...|+...+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 77777777777777777776653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-08 Score=70.37 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=37.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC
Q 036461 205 ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG 284 (369)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (369)
.....+.+.|++++|+..|++.++..+. +...|..+..++...|++++|+..++..++.+ +.+...+..+..++...|
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCC
Confidence 3334444444444444444444433211 33334444444444444444444444444332 123334444444444444
Q ss_pred CHHHHHHHHHHHHHc
Q 036461 285 YIVEAVELFRTLRIL 299 (369)
Q Consensus 285 ~~~~a~~~~~~~~~~ 299 (369)
++++|...|++..+.
T Consensus 96 ~~~~A~~~~~~al~l 110 (126)
T 4gco_A 96 EWSKAQRAYEDALQV 110 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 444444444444433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-08 Score=74.18 Aligned_cols=96 Identities=9% Similarity=0.025 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.|..+...+...|++++|+..|++..... +.+..++..+..++...|++++|+..+++..+.. +.+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 86 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 44455555555555555555555555543 3344555555555555555555555555554432 224444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
+..++...|++++|...+++....
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555555555555555555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.04 E-value=3e-08 Score=79.82 Aligned_cols=171 Identities=9% Similarity=-0.003 Sum_probs=126.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCC---CCC--H
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI---NPN--V 95 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~ 95 (369)
.+...+..+...|++++|++.+++..+...... ........+..+...+...|++++|+..+++...... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP-EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 455667788899999999999998887652100 0000112345566777888999999999999875321 111 4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHh---cCC-CC--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC----CC-cc
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMD---QGV-QP--NVVSFNVIMNELCKNGKMDEASRLLELMIQIG----VR-PN 164 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~ 164 (369)
.+++.+...|...|++++|...|++..+ ... .+ ...++..+..+|...|++++|...+++..+.. .. .-
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5888999999999999999999999873 211 11 12578889999999999999999999887642 11 12
Q ss_pred HHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 036461 165 AFVYNTLMDGFCLTGRVNRA-EELFVSME 192 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 192 (369)
..++..+..++.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 67788999999999999999 77787765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.8e-09 Score=76.08 Aligned_cols=100 Identities=9% Similarity=-0.094 Sum_probs=91.0
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
+..++..+...+.+.|++++|+..|+++...+ |.++..|..+..++...|++++|+..|++..... |.++..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~ 106 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHH
Confidence 55688899999999999999999999999987 6678999999999999999999999999998863 447888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQG 125 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (369)
|..+..+|...|++++|...|++.++..
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999864
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.5e-08 Score=77.10 Aligned_cols=188 Identities=7% Similarity=-0.074 Sum_probs=129.6
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHH-------HHHHHhcCChHHHHHHHHHhHhCCCCCC---------
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTI-------IDGLCKEGFVDKAKELFLKMKDENINPN--------- 94 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------- 94 (369)
..++...|.+.|.++...+ |.....|..+ ...+...++..+++..+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIG 88 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECC
T ss_pred cCCCHHHHHHHHHHHHHhC-------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccC
Confidence 6899999999999999987 5567888888 5666666666666666666544 1221
Q ss_pred -------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 036461 95 -------------VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGV 161 (369)
Q Consensus 95 -------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (369)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+......
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~- 165 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP- 165 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-
Confidence 2233456677788888888888888877643 333355556667788888888888887554432
Q ss_pred Ccc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 036461 162 RPN--AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKH--NVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (369)
Q Consensus 162 ~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (369)
.|. ...+..+..++...|++++|+..|++.......| ..........++.+.|+.++|...|+++....
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 111 2356677778888888888888888876443213 33455666677777888888888888887763
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=9.4e-09 Score=71.48 Aligned_cols=118 Identities=13% Similarity=0.017 Sum_probs=59.2
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
+...+..+...+...|++++|+..|+++.... +.+...+..+..++...|++++|++.+++..... +.+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 82 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHH
Confidence 33445555555555555555555555555543 2344555555555555555555555555555431 223445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG 144 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (369)
+..+..++...|++++|...+++..... +.+...+..+..++...|
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 5555555555555555555555555442 113334444444444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.02 E-value=9e-09 Score=77.85 Aligned_cols=158 Identities=10% Similarity=-0.075 Sum_probs=108.1
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC----CCC-CcHHhHHHHHHHHHhccc
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIK-PDVVIYNTLFIGLFEIHQ 250 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~ 250 (369)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578889999865555442 1346677888888888899999999998888762 111 234567777888888899
Q ss_pred HHHHHHHHHHHHHc----CCCc--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHcCC
Q 036461 251 VERAFKLFDEMQRH----GVAA--DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY---EL--DIRAYNCLIDGLCKSG 319 (369)
Q Consensus 251 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g 319 (369)
+++|...+.+..+. +..+ ....+..+...+...|++++|...+++...... .+ ...++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99998888876653 1111 234566777888888899999888888764310 11 1234567777888888
Q ss_pred CHHHHHHHHHhcccC
Q 036461 320 RLKIAWELFRSLPRG 334 (369)
Q Consensus 320 ~~~~a~~~~~~~~~~ 334 (369)
++++|...+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888887763
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-08 Score=78.52 Aligned_cols=199 Identities=10% Similarity=-0.080 Sum_probs=147.4
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHH-------HHHHHhcCChhHHHHHHHHHHcCCCCC--------------Ccccccch
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTL-------INGLCRTGHTIVALNLFEEMANGNGEF--------------GVVCKPNT 60 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~--------------~~~~~~~~ 60 (369)
+|++.|.+..+.. |-....|..+ ...+.+.++..+++..+.......+.. ..++..-.
T Consensus 24 ~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~ 102 (282)
T 4f3v_A 24 RSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPL 102 (282)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHH
T ss_pred HHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHh
Confidence 6899999999986 6677899988 678888888888888877776633110 00011112
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHH
Q 036461 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPN--VVSFNVIMN 138 (369)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 138 (369)
.....+...+...|++++|.++|+.+...+ |+......+...+.+.++|++|+..|+...... .|. ...+..+..
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHH
Confidence 345567788899999999999999988753 443366677778999999999999998665431 111 346778889
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRP--NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSIL 206 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (369)
++...|++++|+..|++.......| ..........++.+.|+.++|...|+++.... |+......|
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 9999999999999999998644324 34466778888999999999999999999874 444444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-08 Score=68.82 Aligned_cols=98 Identities=16% Similarity=0.242 Sum_probs=58.5
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
..+|..+...+...|++++|+..|+++.... +.+..++..+..++...|++++|+..++++.... +.+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHH
Confidence 3455666666666666666666666666544 3345556666666666666666666666665542 2345555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..+...+...|++++|...++++...
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56666666666666666666666554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.6e-09 Score=77.70 Aligned_cols=156 Identities=11% Similarity=0.039 Sum_probs=93.0
Q ss_pred HhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC----CC-CCCHHhHHHHHHH
Q 036461 30 CRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE----NI-NPNVVTYNSLIHG 104 (369)
Q Consensus 30 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~ 104 (369)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... +. +....++..+...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 75 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-------PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMV 75 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-------TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4578888888855555432 1345677888888888888888888888887651 11 1234556677777
Q ss_pred HHhcCCHHHHHHHHHHHHhc----CCCC--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHc----CCC-ccHHHHHHHHH
Q 036461 105 FCYANDWNEAKCLFIEMMDQ----GVQP--NVVSFNVIMNELCKNGKMDEASRLLELMIQI----GVR-PNAFVYNTLMD 173 (369)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~ 173 (369)
+...|++++|...+++.... +..+ ....+..+...+...|++++|...+++..+. +.+ ....++..+..
T Consensus 76 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 77888888888777776543 1011 1234555666666677777777776665532 111 01223455556
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 036461 174 GFCLTGRVNRAEELFVSME 192 (369)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~ 192 (369)
.+...|++++|.+.+++..
T Consensus 156 ~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHH
Confidence 6666666666666665554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-08 Score=72.73 Aligned_cols=110 Identities=9% Similarity=-0.052 Sum_probs=76.7
Q ss_pred HHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHH
Q 036461 6 LFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLK 85 (369)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (369)
.|++..+.. |.+...+..+...+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|++
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-------HYDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344555443 3455566777777777778888877777777765 45677777777777777777777777777
Q ss_pred hHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 86 MKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
+.... +.+...+..+..++...|++++|...|++.++.
T Consensus 81 al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 81 GAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76652 335666777777777777777777777777664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-08 Score=83.68 Aligned_cols=151 Identities=11% Similarity=-0.029 Sum_probs=94.5
Q ss_pred CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc--------------HHhHHHHHHH
Q 036461 179 GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD--------------VVIYNTLFIG 244 (369)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 244 (369)
+++++|...++...... +.+...+..+...+.+.|++++|+..|++.+....... ...+..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554443321 23456777778888888888888888888887643321 3566666666
Q ss_pred HHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 036461 245 LFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIA 324 (369)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 324 (369)
+.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++.+.. +.+..++..+..++...|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777776666653 3356666666666666777777777776666654 44556666666666666666666
Q ss_pred -HHHHHhcc
Q 036461 325 -WELFRSLP 332 (369)
Q Consensus 325 -~~~~~~~~ 332 (369)
...|+.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 33444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-08 Score=73.81 Aligned_cols=120 Identities=8% Similarity=0.128 Sum_probs=68.0
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHH-HHhcC
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHG-FCYAN 109 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 109 (369)
..|++++|+..+++..... +.+...|..+..++...|++++|+..|+++.+.. +.+...+..+..+ +...|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQAS 93 (177)
T ss_dssp -----CCCCHHHHHHHHHC-------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcC
Confidence 4556666666666665544 3445566666666666666666666666665542 2245555555555 55566
Q ss_pred CH--HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 110 DW--NEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 110 ~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
++ ++|...+++..... +.+...+..+..++...|++++|...++.+.+.
T Consensus 94 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp TCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 65 66666666666543 224455555666666666666666666666654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-09 Score=87.97 Aligned_cols=130 Identities=12% Similarity=-0.031 Sum_probs=85.6
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc---------------hhhHHHHHHHHHhcCChHHHHHH
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN---------------TVTYTTIIDGLCKEGFVDKAKEL 82 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~ 82 (369)
+...|..+...+.+.|++++|+..|+++.... +.+ ..+|..+..++.+.|++++|+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-------p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 218 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-------EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES 218 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-------TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-------hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56688999999999999999999999999876 222 35666666666666666666666
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHH-HHHHHHH
Q 036461 83 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEA-SRLLELM 156 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 156 (369)
|+++.+.. +.+...|..+..+|...|++++|...|++.++.. +.+...+..+..++...|+.+++ ...|..|
T Consensus 219 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 219 CNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666542 3355666666666666666666666666666543 22444555555566666655555 3344444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-06 Score=67.41 Aligned_cols=260 Identities=11% Similarity=0.055 Sum_probs=157.6
Q ss_pred HhHHHHHHHH---HHhcCChh-HHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC----------hHHHHHHHH
Q 036461 19 VFTYNTLING---LCRTGHTI-VALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF----------VDKAKELFL 84 (369)
Q Consensus 19 ~~~~~~l~~~---~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~ 84 (369)
...|..+... ..+.|.+. +|+.+++.+...+ |.+..+|+.--.++...+. +++++.+++
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~ 98 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE 98 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence 3445444443 34566665 7999999999987 4556777766555554443 678888888
Q ss_pred HhHhCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC-hhHHHHHHHHHHHcCC
Q 036461 85 KMKDENINPNVVTYNSLIHGFCYAN--DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGK-MDEASRLLELMIQIGV 161 (369)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~ 161 (369)
.+.... |-+..+|+.-..++...+ .+++++.+++++.+..+. |..+|+.-..++...|. ++++++.++.+++..
T Consensus 99 ~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~- 175 (331)
T 3dss_A 99 SCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN- 175 (331)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-
T ss_pred HHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-
Confidence 887763 347788887777777777 488899999998887543 77778777777777787 488888888888876
Q ss_pred CccHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 036461 162 RPNAFVYNTLMDGFCLT--------------GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (369)
+.|...|+.....+... +.++++++.+....... |.|..+|+.+-..+.+.-.
T Consensus 176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~------------ 242 (331)
T 3dss_A 176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSG------------ 242 (331)
T ss_dssp SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSC------------
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccC------------
Confidence 44777777666655554 33556666666666554 4555555544333333200
Q ss_pred hCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHH---HHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 036461 228 SKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFI---DGLCKNGYIVEAVELFRTLRILKYELD 304 (369)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~ 304 (369)
.++ .+ -...+..+++++.++++.+..+ -+...+..++ ......|..+++...+.++.+.+ |..
T Consensus 243 ----~~~-~~-------~~~~~~l~~el~~~~elle~~p-d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r 308 (331)
T 3dss_A 243 ----RCE-LS-------VEKSTVLQSELESCKELQELEP-ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMR 308 (331)
T ss_dssp ----GGG-CC-------HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGG
T ss_pred ----ccc-cc-------hHHHHHHHHHHHHHHHHHhhCc-ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cch
Confidence 000 00 0112345566666666665421 1222222221 12223566667777777777665 444
Q ss_pred HHHHHHHHHHH
Q 036461 305 IRAYNCLIDGL 315 (369)
Q Consensus 305 ~~~~~~l~~~~ 315 (369)
..-|..+...+
T Consensus 309 ~~~y~d~~~~~ 319 (331)
T 3dss_A 309 AAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 45555554433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-06 Score=70.99 Aligned_cols=183 Identities=10% Similarity=-0.055 Sum_probs=140.9
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC----------hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGH----------TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGL 70 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 70 (369)
++|+++++.++..+ |-+..+|+.--.++...+. +++++.+++.+...+ |-+..+|+.-..++
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-------PKny~aW~hR~wlL 118 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------PKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 36899999999876 6677788877666665554 678999999999877 66888999888888
Q ss_pred HhcC--ChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC----
Q 036461 71 CKEG--FVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND-WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKN---- 143 (369)
Q Consensus 71 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 143 (369)
...+ .+++++.+++++.+.. +.|..+|+.-..++...|. +++++..++++++..+. |...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 8888 4899999999999874 4488899888888888888 69999999999987644 777887776666554
Q ss_pred ----------CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhc
Q 036461 144 ----------GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT-----------GRVNRAEELFVSMESM 194 (369)
Q Consensus 144 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~ 194 (369)
+.++++++.+...+... |-|...|+.+-..+.+. +.++++++.++++.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 34778899999888875 45777777555555444 2356666666666655
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.6e-08 Score=67.37 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 036461 200 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDG 279 (369)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (369)
...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...++++.+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 334444444444444444444444444443211 33344444444444444444444444444432 1234444444444
Q ss_pred HHhCCCHHHHHHHHHHHHHc
Q 036461 280 LCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~ 299 (369)
+...|++++|...+++....
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 44455555555555444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=5.2e-08 Score=67.61 Aligned_cols=60 Identities=13% Similarity=0.034 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
.+..+..++...|++++|...+++..... +.+...+..++..+...|++++|...|++..
T Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 48 YFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33333344444444444444444443332 2233333444444444444444444444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-08 Score=71.83 Aligned_cols=110 Identities=10% Similarity=-0.028 Sum_probs=80.5
Q ss_pred HHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036461 41 LFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIE 120 (369)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 120 (369)
.|+++...+ |.+...+..+...+...|++++|+..|+++.... +.+...|..+..++...|++++|+..|++
T Consensus 9 ~~~~al~~~-------p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 9 TIAMLNEIS-------SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp SHHHHTTCC-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHcCC-------HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455555543 4456677777888888888888888888877653 34677777788888888888888888888
Q ss_pred HHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 121 MMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
..... +.+...+..+..++...|++++|...|+...+.
T Consensus 81 al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 81 GAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 87764 235667777777888888888888888877765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.93 E-value=7.6e-09 Score=73.36 Aligned_cols=109 Identities=11% Similarity=-0.026 Sum_probs=77.9
Q ss_pred HHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHh
Q 036461 7 FMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKM 86 (369)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (369)
|++..+.. |.+...+..+...+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|++.
T Consensus 7 l~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 7 LAMLRGLS-EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-------HYDARYFLGLGACRQSLGLYEQALQSYSYG 78 (142)
T ss_dssp --CCTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444332 3345566677777888888888888888887765 456777788888888888888888888887
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 87 KDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
.... +.+...+..+..++...|++++|...|++....
T Consensus 79 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 79 ALMD-INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7653 346667777778888888888888888877665
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-07 Score=65.25 Aligned_cols=59 Identities=14% Similarity=0.212 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036461 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (369)
+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++.
T Consensus 46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 46 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333333333444444444443333321 1223333333444444444444444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=75.45 Aligned_cols=123 Identities=8% Similarity=0.133 Sum_probs=102.0
Q ss_pred HHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhCCCh--
Q 036461 70 LCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNE-LCKNGKM-- 146 (369)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 146 (369)
+...|++++|+..+++..... +.+...|..+..+|...|++++|...|++..... +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 356789999999999988763 4578899999999999999999999999998864 3367778888888 7789998
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036461 147 DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG 195 (369)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (369)
++|...++.+.+.. +.+...+..+..++...|++++|...++++....
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999875 4467888899999999999999999999998874
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.4e-08 Score=67.76 Aligned_cols=98 Identities=11% Similarity=-0.030 Sum_probs=70.2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
...|..+...+.+.|++++|+..|++..+.. |.+...|..+..++.+.|++++|+..+++..+.. +.+...|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 4566677777777777777777777777765 4556777777777777777777777777776653 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..+..++...|++++|...|++..+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777777777777654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-07 Score=64.34 Aligned_cols=98 Identities=22% Similarity=0.139 Sum_probs=69.2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHH
Confidence 4566677777777777777777777777654 4456677777777777777777777777776652 3356667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..+..++...|++++|...+++..+.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777777777777665
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.8e-08 Score=66.26 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=58.7
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC--CH
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP--NV 95 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 95 (369)
+...|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|++.+++..+.. +. +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 76 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNK 76 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchH
Confidence 44455556666666666666666666666544 3345556666666666666666666666665541 22 35
Q ss_pred HhHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 036461 96 VTYNSLIHGFCYA-NDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 96 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 124 (369)
..+..+..++... |++++|.+.+++....
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5555666666666 6666666666666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=5.7e-09 Score=78.73 Aligned_cols=151 Identities=14% Similarity=0.027 Sum_probs=78.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc---------------HH
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD---------------VV 236 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~ 236 (369)
+......|+++++.+.++.-.... ......+..+...+...|++++|...|.+......... ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 334445566666666655332221 22344566667777777888888888877776432211 14
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLC 316 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (369)
.+..+..++...|++++|...++...+.. +.+...+..+..++...|++++|...|++..... +.+..++..+..++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH
Confidence 55555556666666666666666665542 2345555566666666666666666666665543 334555555555555
Q ss_pred cCCCHHHHH
Q 036461 317 KSGRLKIAW 325 (369)
Q Consensus 317 ~~g~~~~a~ 325 (369)
..++.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 555554444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.85 E-value=5e-08 Score=67.46 Aligned_cols=99 Identities=16% Similarity=0.026 Sum_probs=86.5
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLID 313 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 313 (369)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34567778888999999999999999998864 4478889999999999999999999999999876 567888999999
Q ss_pred HHHcCCCHHHHHHHHHhcccC
Q 036461 314 GLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 314 ~~~~~g~~~~a~~~~~~~~~~ 334 (369)
++...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999998875
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-08 Score=77.23 Aligned_cols=121 Identities=17% Similarity=0.083 Sum_probs=59.2
Q ss_pred HhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh----------------hhHH
Q 036461 71 CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV----------------VSFN 134 (369)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~ 134 (369)
...|+++++.+.++..... .......+..+...+...|++++|...|++....... +. ..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHH
Confidence 3445666666655433221 1113455667777888888888888888888764221 11 3344
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036461 135 VIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM 194 (369)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (369)
.+..++...|++++|+..++...+.. +.+...+..+..++...|++++|...|++....
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44444444444444444444444432 223444444444444444444444444444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3.4e-08 Score=69.92 Aligned_cols=99 Identities=13% Similarity=-0.003 Sum_probs=87.0
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLID 313 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 313 (369)
+...+..+...+...|++++|...|+.+...+ +.+...+..+..++...|++++|...|+++.... +.++..+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34566677888999999999999999998874 4578889999999999999999999999999886 667888999999
Q ss_pred HHHcCCCHHHHHHHHHhcccC
Q 036461 314 GLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 314 ~~~~~g~~~~a~~~~~~~~~~ 334 (369)
++...|++++|...|+++.+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998774
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.83 E-value=9e-08 Score=66.22 Aligned_cols=98 Identities=12% Similarity=0.059 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCC--CCCC---
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN--INPN--- 94 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--- 94 (369)
.++..+...+.+.|++++|+..|+++.+.+ |.+...|..+..+|...|++++|++.+++.++.. ..++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 356666777777777777777777777655 4456667777777777777777777777665421 0111
Q ss_pred -HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 95 -VVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 95 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..+|..+..++...|++++|+..|++.+..
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 124555556666666666666666666553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-07 Score=68.55 Aligned_cols=100 Identities=13% Similarity=0.049 Sum_probs=73.9
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.+...|..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|+..|++..+.. +.+..
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 80 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSK 80 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH
Confidence 345567777777778888888888888877765 4467777777778888888888888888777653 33567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
.|..+..++...|++++|...|++.++.
T Consensus 81 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 81 AWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 7777777777788888888887777765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.8e-07 Score=65.64 Aligned_cols=99 Identities=14% Similarity=-0.029 Sum_probs=61.3
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.+...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|+..+++..+.. +.+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 78 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVK 78 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHH
Confidence 445566666666666666666666666666654 3445666666666666666666666666665542 23455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (369)
.+..+..++...|++++|...|++...
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666666666554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-07 Score=65.94 Aligned_cols=117 Identities=11% Similarity=-0.135 Sum_probs=95.3
Q ss_pred CcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036461 233 PDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLI 312 (369)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 312 (369)
.+...+..+...+...|++++|...+....+.. +.+...+..+..++...|++++|...++++.... +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467788889999999999999999999998874 4468889999999999999999999999999876 56788999999
Q ss_pred HHHHcCCCHHHHHHHHHhcccCCc----ccCHHHHHHHHHHHH
Q 036461 313 DGLCKSGRLKIAWELFRSLPRGVL----IADVVTYNIMIHALC 351 (369)
Q Consensus 313 ~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~ 351 (369)
.++...|++++|...|+++.+... ..+......+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876421 113444544444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=8.6e-07 Score=60.02 Aligned_cols=89 Identities=15% Similarity=0.020 Sum_probs=34.4
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 036461 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRL 321 (369)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 321 (369)
...+...|++++|...++...... +.+...+..+..++...|++++|...++++.... +.+...+..++.++...|++
T Consensus 11 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 88 (118)
T 1elw_A 11 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 88 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhH
Confidence 333333344444444443333321 1133333333344444444444444444443332 22333334444444444444
Q ss_pred HHHHHHHHhcc
Q 036461 322 KIAWELFRSLP 332 (369)
Q Consensus 322 ~~a~~~~~~~~ 332 (369)
++|...+++..
T Consensus 89 ~~A~~~~~~~~ 99 (118)
T 1elw_A 89 EEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.77 E-value=6.4e-08 Score=67.19 Aligned_cols=99 Identities=13% Similarity=0.163 Sum_probs=65.9
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCC--CCC--
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI--NPN-- 94 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~-- 94 (369)
...|..+...+...|++++|+..|+++.... +.+...+..+..++...|++++|...++++..... +++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 4456667777777777777777777777654 44566677777777777777777777777655311 111
Q ss_pred --HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 95 --VVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 95 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..++..+..++...|++++|...|++....
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 555666666677777777777777776664
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.7e-07 Score=63.81 Aligned_cols=60 Identities=10% Similarity=0.117 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 168 YNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
+..++..+.+.|++++|++.|++..+.. |.+...|..+..+|...|++++|+..+++.++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444555555555555555544443 33344444444445555555555554444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.5e-07 Score=64.40 Aligned_cols=98 Identities=14% Similarity=-0.004 Sum_probs=63.1
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc----hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN----TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP 93 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 93 (369)
+...+..+...+...|++++|+..|++..+.. |+ ...+..+..++...|++++|+..+++..+.. +.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--------ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GG 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-cc
Confidence 45566666667777777777777777776654 33 4566666666666777777777776665542 23
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 94 NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
+...+..+..++...|++++|...|++....
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5556666666666667777777776666654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-07 Score=69.14 Aligned_cols=99 Identities=11% Similarity=-0.008 Sum_probs=89.0
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLID 313 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 313 (369)
+...+..+...+...|++++|+..|++.++.. +.+...+..+..+|...|++++|+..++++.... +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 55678888999999999999999999999874 3478899999999999999999999999999886 667889999999
Q ss_pred HHHcCCCHHHHHHHHHhcccC
Q 036461 314 GLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 314 ~~~~~g~~~~a~~~~~~~~~~ 334 (369)
+|...|++++|...|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999998874
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=9.5e-08 Score=65.43 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 036461 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCK 317 (369)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (369)
+..+...+.+.|++++|...++.+++.. +.+...+..+..++...|++++|+..|+++.... +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4455666677777777777777777653 3366677777777777777777777777777665 4466677777777777
Q ss_pred CCCHHHHHHHHHhcccC
Q 036461 318 SGRLKIAWELFRSLPRG 334 (369)
Q Consensus 318 ~g~~~~a~~~~~~~~~~ 334 (369)
.|++++|...++++++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-06 Score=72.80 Aligned_cols=204 Identities=7% Similarity=-0.027 Sum_probs=146.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCcccc----------cchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-CCCC
Q 036461 25 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCK----------PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-NINP 93 (369)
Q Consensus 25 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~ 93 (369)
-.+.+.+.|++++|++.|..+.+..+..+.... ....++..++..|...|++++|.+.+..+... +..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 456788899999999999999886632111000 00124788999999999999999999988652 1111
Q ss_pred CH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC----
Q 036461 94 NV----VTYNSLIHGFCYANDWNEAKCLFIEMMDQ----GVQP-NVVSFNVIMNELCKNGKMDEASRLLELMIQIG---- 160 (369)
Q Consensus 94 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 160 (369)
+. .+.+.+...+...|+++.|..++...... +..+ -..++..+...+...|++++|..+++.+...-
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 22334445555678999999999887542 2222 24467788999999999999999999886541
Q ss_pred -CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCch--HHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 161 -VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM----GCKHN--VFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 161 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
.+....++..++..|...|++++|..++++.... +.++. ...+..+...+...+++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1223567888899999999999999999887542 22222 34566777888899999999998887765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=64.69 Aligned_cols=96 Identities=7% Similarity=-0.065 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.+..+...+.+.|++++|+..|+++.+.. |.+...|..+..++...|++++|+..|++..+.. +.+...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 45556667777777777777777777765 4466777777777777777777777777776652 335666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
+..++...|++++|...+++.++.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777777654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.9e-07 Score=61.14 Aligned_cols=94 Identities=11% Similarity=-0.025 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--hHHHHHHHHHHH
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKH--NVFSYSILINGY 210 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 210 (369)
+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3333444444444444444444444332 1233334444444444444444444444444332 22 233444444444
Q ss_pred hhc-CChHHHHHHHHHHHh
Q 036461 211 CKN-KEIEGALSLYSEMLS 228 (369)
Q Consensus 211 ~~~-~~~~~a~~~~~~~~~ 228 (369)
... |++++|...+.+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 444 444444444444444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.2e-07 Score=78.65 Aligned_cols=150 Identities=10% Similarity=-0.023 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc--------------HHhHHHHHHHHH
Q 036461 181 VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD--------------VVIYNTLFIGLF 246 (369)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~ 246 (369)
+++|...++...... +.....+..+...+.+.|++++|+..|++.++...... ...|..+..++.
T Consensus 250 ~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 250 FEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333221 22345667777778888888888888888777532211 356666777777
Q ss_pred hcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH-
Q 036461 247 EIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAW- 325 (369)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~- 325 (369)
+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++.+.. +.+..++..+..++.+.++.+++.
T Consensus 329 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776653 3356667777777777777777777777776654 345556666666676666666654
Q ss_pred HHHHhccc
Q 036461 326 ELFRSLPR 333 (369)
Q Consensus 326 ~~~~~~~~ 333 (369)
..++.|..
T Consensus 407 ~~~~~~f~ 414 (457)
T 1kt0_A 407 RIYANMFK 414 (457)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHh
Confidence 34455543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-07 Score=64.01 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCC--CcC----HHHHHH
Q 036461 202 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGV--AAD----TWAYRT 275 (369)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 275 (369)
.+..+...+...|++++|...+.+...... .+...+..+...+...|++++|...++.+.+... .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444455555555555555555544321 1334444444444445555555555544443211 011 333444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 036461 276 FIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
+..++...|++++|...++++..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44444444444444444444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.4e-06 Score=70.59 Aligned_cols=199 Identities=12% Similarity=-0.011 Sum_probs=142.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhCCCCCC----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 036461 65 TIIDGLCKEGFVDKAKELFLKMKDENINPN----------------VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ- 127 (369)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 127 (369)
.-...+.+.|++++|++.|..+.+...... ...+..++..|...|++++|...+.++...-..
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 345667889999999999999987522111 124678899999999999999999887653111
Q ss_pred CCh----hhHHHHHHHHHhCCChhHHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---
Q 036461 128 PNV----VSFNVIMNELCKNGKMDEASRLLELMIQI----GV-RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG--- 195 (369)
Q Consensus 128 ~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 195 (369)
++. .+.+.+...+...|+++.+..++...... +. ..-..++..+...+...|++++|..++..+...-
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 111 12233344445678899999999887643 22 2235677889999999999999999999885431
Q ss_pred --CCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC---CCCC-c--HHhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 036461 196 --CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK---GIKP-D--VVIYNTLFIGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 196 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (369)
-+....++..++..|...|++++|..++++.... ...| . ...+..+...+...+++++|...+....+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1223567888999999999999999999987753 1122 1 24556667777888999999888877654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-06 Score=60.92 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=53.2
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN----VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFN 134 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (369)
+...+..+...+...|++++|++.|++..+. .|+ ...+..+..++...|++++|...+++..... +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3445555666666666666666666666553 233 4455555555555566666666655555442 12344445
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 135 VIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
.+..++...|++++|...++...+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555555555555555555544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-06 Score=60.27 Aligned_cols=95 Identities=11% Similarity=-0.050 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccch---hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC---H
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT---VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN---V 95 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 95 (369)
+..+...+.+.|++++|+..|+++.... |.+. ..+..+..++...|++++|+..|+++.+.. +.+ .
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 76 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-------PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAA 76 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-------CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccH
Confidence 4456667777888888888888877755 2233 467777778888888888888888877642 223 5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..+..+..++...|++++|...|+++...
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56677777777888888888888877765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.3e-07 Score=66.15 Aligned_cols=96 Identities=14% Similarity=-0.001 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHcCCCHHHHHHHHHhcccC----Ccc-cCHH
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRILKYE-L----DIRAYNCLIDGLCKSGRLKIAWELFRSLPRG----VLI-ADVV 341 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~ 341 (369)
.+..+...+...|++++|...+++....... + ...++..+...+...|++++|...+++..+. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555566666666665555432100 0 1334555566666666666666666655431 111 1134
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 342 TYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
++..+..++...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55566667777777777777776643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.62 E-value=7.2e-08 Score=82.61 Aligned_cols=124 Identities=13% Similarity=-0.004 Sum_probs=77.2
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc---------------hhhHHHHHHHHHhcCChHHHHHH
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN---------------TVTYTTIIDGLCKEGFVDKAKEL 82 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~ 82 (369)
....|..+...+.+.|++++|+..|+++.... +.+ ..+|..+..++.+.|++++|+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-------p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-------EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-------cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45578889999999999999999999999865 222 35566666666666666666666
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHH
Q 036461 83 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEAS 150 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (369)
++++++.. +.+...|..+..+|...|++++|...|++.++.. +-+...+..+..++...++.+++.
T Consensus 340 ~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 340 CDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66665542 2355556666666666666666666666665542 123344555555555555544443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.62 E-value=8.8e-07 Score=76.24 Aligned_cols=118 Identities=11% Similarity=0.067 Sum_probs=53.0
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHH
Q 036461 174 GFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVER 253 (369)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (369)
.+.+.|++++|.+.++++.+.. +.+..++..+..++.+.|++++|+..+++..+.... +...+..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555442 333445555555555555555555555555554221 34444455555555555555
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHH--HHhCCCHHHHHHHHH
Q 036461 254 AFKLFDEMQRHGVAADTWAYRTFIDG--LCKNGYIVEAVELFR 294 (369)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 294 (369)
|...++++.+... .+...+..+..+ +.+.|++++|...++
T Consensus 93 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555444321 122222223222 444455555555444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.56 E-value=5.3e-08 Score=83.79 Aligned_cols=125 Identities=10% Similarity=-0.010 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.+..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++.+.|++++|++.+++..+.. +.+...+..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~ 79 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYR 79 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 34455566778899999999999999876 5568899999999999999999999999999873 447888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhCCChhHHHHHHH
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNE--LCKNGKMDEASRLLE 154 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 154 (369)
+..+|...|++++|.+.|++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999988642 244556556555 778899999999988
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.9e-06 Score=74.48 Aligned_cols=172 Identities=10% Similarity=-0.065 Sum_probs=139.1
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC----------hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGH----------TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGL 70 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 70 (369)
++|++.++++.+.+ |-+..+|+.--.++...|+ ++++++.++.+.+.+ |-+..+|+.-..++
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-------pK~y~aW~hR~w~l 117 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------PKSYGTWHHRCWLL 117 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 37899999999986 6677889988888888887 899999999999987 66788999999999
Q ss_pred HhcC--ChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC----
Q 036461 71 CKEG--FVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN-DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKN---- 143 (369)
Q Consensus 71 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 143 (369)
.+.+ +++++++.++++.+.. +.+..+|+....++.+.| .++++++.++++++..+. +...|+.....+...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence 9999 7799999999999875 448889998888888888 899999999999887543 777888777766653
Q ss_pred ----------CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHH
Q 036461 144 ----------GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNR 183 (369)
Q Consensus 144 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 183 (369)
+.++++++.++.+.... +-+...|..+...+.+.++.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 44678888888888765 4467777777777776666433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-06 Score=62.19 Aligned_cols=106 Identities=13% Similarity=0.045 Sum_probs=73.0
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCC------Ccc-----cccchhhHHHHHHHHHhcCChHHHHHHHHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF------GVV-----CKPNTVTYTTIIDGLCKEGFVDKAKELFLKM 86 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (369)
....+......+.+.|++++|+..|++........ ... .+.+...|..+..++.+.|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 35578888999999999999999999988751000 000 0223456677777777777777777777777
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 87 KDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
+... +.+...|..+..++...|++++|...|++....
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 6652 335667777777777777777777777777665
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-06 Score=72.24 Aligned_cols=127 Identities=8% Similarity=-0.038 Sum_probs=74.2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCC---------CcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF---------GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
...|..+...+.+.|++++|+..|+++.+..... ....+.+..+|..+..++.+.|++++|++.++++.+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 3457888899999999999999999988721000 0001233455666666666666666666666666654
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChh
Q 036461 90 NINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMD 147 (369)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (369)
. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++...++.+
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 2 2345556666666666666666666666665542 113334444444444443333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=8.2e-06 Score=71.61 Aligned_cols=178 Identities=9% Similarity=-0.017 Sum_probs=143.7
Q ss_pred HhcCC-hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC----------hHHHHHHHHHhHhCCCCCCHHhH
Q 036461 30 CRTGH-TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF----------VDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 30 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
.+.|+ .++|++.++++...+ |.+..+|+.-..++...|+ ++++++.++.+.+.. +-+..+|
T Consensus 39 ~~~~~~~eeal~~~~~~l~~n-------P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW 110 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 110 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHH
Confidence 34444 467899999999977 5567888888888877777 999999999999874 3488899
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 036461 99 NSLIHGFCYAN--DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG-KMDEASRLLELMIQIGVRPNAFVYNTLMDGF 175 (369)
Q Consensus 99 ~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (369)
+.-..++.+.+ ++++++..++++.+.... +..+|+.-..++...| .++++++.++.+++.. +.+...|+.....+
T Consensus 111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll 188 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 188 (567)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHH
Confidence 99888888999 779999999999998644 7888988888888888 8999999999999876 44788888877776
Q ss_pred Hhc--------------CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHH
Q 036461 176 CLT--------------GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (369)
Q Consensus 176 ~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (369)
.+. +.++++++.++.+.... |.+..+|......+.+.+..++
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 189 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 663 45788999999888775 6678888888777777666443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-06 Score=62.29 Aligned_cols=28 Identities=7% Similarity=-0.156 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 61 VTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
.++..+...+...|++++|+..+++..+
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~ 37 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLL 37 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.7e-07 Score=61.55 Aligned_cols=89 Identities=10% Similarity=0.048 Sum_probs=64.6
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (369)
..|++++|+..|+++.+.+.. -+.+...+..+..++...|++++|+..|++..+.. |.+...+..+..++...|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ----GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGR 76 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHcCCC----CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCC
Confidence 457888888888888875210 03456778888888888888888888888887763 3467778888888888888
Q ss_pred HHHHHHHHHHHHhc
Q 036461 111 WNEAKCLFIEMMDQ 124 (369)
Q Consensus 111 ~~~a~~~~~~~~~~ 124 (369)
+++|...+++....
T Consensus 77 ~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 77 YEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.8e-06 Score=56.37 Aligned_cols=26 Identities=12% Similarity=0.223 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (369)
+..+..++...|++++|...|+++..
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33344444444444444444444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.9e-07 Score=61.45 Aligned_cols=82 Identities=17% Similarity=0.064 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHcC--CCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHH
Q 036461 1 MEAAALFMKLRVFG--CEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDK 78 (369)
Q Consensus 1 ~~A~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 78 (369)
++|+..|++.++.+ -|.+..+|..+..++...|++++|+..|+++.+.. |.+...+..+..++...|++++
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-------PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHcCCHHH
Confidence 57899999999874 24566789999999999999999999999999976 5568899999999999999999
Q ss_pred HHHHHHHhHhC
Q 036461 79 AKELFLKMKDE 89 (369)
Q Consensus 79 a~~~~~~~~~~ 89 (369)
|+..+++....
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998775
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-06 Score=71.53 Aligned_cols=91 Identities=8% Similarity=-0.129 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHH
Q 036461 269 DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIH 348 (369)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 348 (369)
+...+..+..+|.+.|++++|+..++++.+.. +.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567777777888888888888888887665 4567777778888888888888888888877642 225666677777
Q ss_pred HHHhcCchHHHHH
Q 036461 349 ALCADGKMDKARD 361 (369)
Q Consensus 349 ~~~~~g~~~~A~~ 361 (369)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.49 E-value=7.2e-07 Score=73.17 Aligned_cols=149 Identities=12% Similarity=0.018 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 036461 199 NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFID 278 (369)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 278 (369)
....+..+...+.+.|++++|...|.+.+.. .|+... +...++.+++...+. ...+..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3456777788888899999999999988875 233321 223344444332221 126677788
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHH-HHhcCchH
Q 036461 279 GLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHA-LCADGKMD 357 (369)
Q Consensus 279 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~ 357 (369)
+|.+.|++++|+..+++++... +.+...+..+..+|...|++++|...|+++.+... -+...+..+..+ ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888775 55778888888888888888888888888877532 134455555544 23456677
Q ss_pred HHHHHHHHhhc
Q 036461 358 KARDLFLDMEA 368 (369)
Q Consensus 358 ~A~~~~~~m~~ 368 (369)
++.+.|.+|.+
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 77777777653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-06 Score=60.94 Aligned_cols=96 Identities=10% Similarity=-0.041 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCc------CH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc------
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA------DT-----WAYRTFIDGLCKNGYIVEAVELFRTLRIL------ 299 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 299 (369)
.+......+...|++++|+..|+..++..... +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455556666777777777777766642210 11 25555666666666666666666666654
Q ss_pred -CCCCCHHHH----HHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 300 -KYELDIRAY----NCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 300 -~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
. +.+...| .....++...|++++|+..|++.++
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3 3344455 5555566666666666666665554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.6e-07 Score=62.02 Aligned_cols=90 Identities=18% Similarity=0.046 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccC-------HHHH
Q 036461 271 WAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIAD-------VVTY 343 (369)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~ 343 (369)
..+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...++++.+.. |+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHHH
Confidence 344445555555555555555555555443 3344555555555555555555555555555431 22 3344
Q ss_pred HHHHHHHHhcCchHHHHHHH
Q 036461 344 NIMIHALCADGKMDKARDLF 363 (369)
Q Consensus 344 ~~l~~~~~~~g~~~~A~~~~ 363 (369)
..+..++...|++++|++.+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 44444555555544444433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.43 E-value=4e-06 Score=60.61 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 165 AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
...+..+..++.+.|++++|+..++.+.... +.+...|..+..++...|++++|...|++....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3455555666666666666666666665553 444555666666666666666666666666554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.39 E-value=6.4e-06 Score=58.19 Aligned_cols=105 Identities=10% Similarity=-0.077 Sum_probs=67.9
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcc-----cccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC----
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-----CKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE---- 89 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 89 (369)
...+......+.+.|++++|+..|++..+..+.+... .+.+...|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4456778888999999999999999999866210000 0001226777777777777777777777777653
Q ss_pred -CCCC-CHHhH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 036461 90 -NINP-NVVTY----NSLIHGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 90 -~~~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (369)
.+.| +...| .....++...|++++|+..|++.++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0022 34455 6666666666666666666666654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-06 Score=71.49 Aligned_cols=148 Identities=9% Similarity=-0.034 Sum_probs=66.9
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
...+..+...+.+.|++++|+..|+++.... |+... +...++.+++...+ ...+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--------p~~~~-------~~~~~~~~~~~~~l----------~~~~~ 233 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--------GDDFM-------FQLYGKYQDMALAV----------KNPCH 233 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--------CHHHH-------HTCCHHHHHHHHHH----------HTHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--------ccchh-------hhhcccHHHHHHHH----------HHHHH
Confidence 4567788888999999999999999988754 44321 11122222222211 11245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHH-HHh
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDG-FCL 177 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 177 (369)
..+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|+.+.+.. +.+...+..+... ...
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
Confidence 555556666666666666666655542 2244555556666666666666666666655442 1133333333333 222
Q ss_pred cCChHHHHHHHHHHHh
Q 036461 178 TGRVNRAEELFVSMES 193 (369)
Q Consensus 178 ~~~~~~a~~~~~~~~~ 193 (369)
.+..+++...|..+..
T Consensus 312 ~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 312 KALYQKQKEMYKGIFK 327 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHhhC
Confidence 3445555555555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.8e-06 Score=56.72 Aligned_cols=81 Identities=12% Similarity=0.023 Sum_probs=67.6
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|++.|++..+.. |.+...|..+...+...|++++|+..|++....+ +.+...|..+..++...|++++|.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-------PTYSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 36788888888875 5678888889999999999999999999988876 456778888888999999999999
Q ss_pred HHHHHhHhC
Q 036461 81 ELFLKMKDE 89 (369)
Q Consensus 81 ~~~~~~~~~ 89 (369)
..|++....
T Consensus 74 ~~~~~al~~ 82 (115)
T 2kat_A 74 QAWESGLAA 82 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998887653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.1e-06 Score=72.49 Aligned_cols=124 Identities=9% Similarity=-0.152 Sum_probs=62.1
Q ss_pred HHhcccHHHHHHHHHHHHHc---CCCc----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C--CCCCHHHHHH
Q 036461 245 LFEIHQVERAFKLFDEMQRH---GVAA----DTWAYRTFIDGLCKNGYIVEAVELFRTLRIL-----K--YELDIRAYNC 310 (369)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 310 (369)
+...|++++|..++++.++. -..+ ...+++.++.+|...|++++|..++++.+.. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33455666666666554431 0111 1234555566666666666666666555421 1 0112234555
Q ss_pred HHHHHHcCCCHHHHHHHHHhccc-----CCc-ccC-HHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 311 LIDGLCKSGRLKIAWELFRSLPR-----GVL-IAD-VVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 311 l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
|+..|...|++++|..+++++.+ .|. .|+ ..+...+..++...|.+++|..++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655532 111 111 22334444555566666666666666543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.6e-05 Score=55.56 Aligned_cols=89 Identities=10% Similarity=-0.042 Sum_probs=42.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 036461 66 IIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELC 141 (369)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (369)
+...|...+.+++|++.|++..+.| ++..+..|...|.. .+++++|..+|++..+.| +...+..+...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 4444444445555555555554442 44444444444444 445555555555554443 3334444444444
Q ss_pred h----CCChhHHHHHHHHHHHcC
Q 036461 142 K----NGKMDEASRLLELMIQIG 160 (369)
Q Consensus 142 ~----~~~~~~a~~~~~~~~~~~ 160 (369)
. .++.++|..+|+...+.|
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC
Confidence 4 445555555555544443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.1e-06 Score=73.57 Aligned_cols=131 Identities=10% Similarity=-0.063 Sum_probs=86.6
Q ss_pred HHHhcCChhHHHHHHHHHHcCCCC-CCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-----C--CCCCHHhHH
Q 036461 28 GLCRTGHTIVALNLFEEMANGNGE-FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-----N--INPNVVTYN 99 (369)
Q Consensus 28 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~ 99 (369)
.+..+|++++|+.++++....... ++...+....+++.|+.+|...|++++|+.++++.... | .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999888764321 11111223567899999999999999999999887542 2 122345678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQ-----GVQ-P-NVVSFNVIMNELCKNGKMDEASRLLELMIQ 158 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (369)
.|...|...|++++|..++++.... |.. | ...+...+..++...+.+++|..+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888877542 211 1 122334445555566666666666666654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=2.8e-05 Score=54.38 Aligned_cols=111 Identities=9% Similarity=-0.074 Sum_probs=69.0
Q ss_pred CChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----CCChhHH
Q 036461 74 GFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK----NGKMDEA 149 (369)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 149 (369)
+++++|++.|++..+.|. ++.. +...|...+.+++|..+|++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 356677777777766652 2222 5556666666666777777766654 45556666666665 5667777
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcC
Q 036461 150 SRLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAEELFVSMESMG 195 (369)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 195 (369)
..+|++..+.| ++..+..+...|.. .+++++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777666654 44555566666666 566666666666666654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.6e-06 Score=55.76 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=60.2
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC---
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN--- 94 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 94 (369)
+...|..+...+.+.|++++|+..|++..... |.+...+..+..++...|++++|++.+++..+.. +.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHH
Confidence 45567777777777888888888888777765 4456777777777777888888888877777642 112
Q ss_pred ---HHhHHHHHHHHHhcCCHHHHHHH
Q 036461 95 ---VVTYNSLIHGFCYANDWNEAKCL 117 (369)
Q Consensus 95 ---~~~~~~l~~~~~~~~~~~~a~~~ 117 (369)
...+..+..++...|+++.|...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhH
Confidence 34444455555555554444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-05 Score=51.05 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=42.8
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|+..+++..+.. +.+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHH
Confidence 3455555556666666666666666665543 3345555556666666666666666666655432 2234444
Q ss_pred HHHHHHH
Q 036461 99 NSLIHGF 105 (369)
Q Consensus 99 ~~l~~~~ 105 (369)
..+..++
T Consensus 81 ~~l~~~~ 87 (91)
T 1na3_A 81 QNLGNAK 87 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=5.1e-06 Score=58.56 Aligned_cols=93 Identities=14% Similarity=0.014 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCh----------hHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHT----------IVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGL 70 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 70 (369)
++|++.++...+.. |.+...|+.+..++...+++ ++|+..|++..+.+ |.+..+|..+..+|
T Consensus 19 eeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-------P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 19 EQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-------cCcHHHHHHHHHHH
Confidence 46889999999886 77899999999999998875 49999999999977 55688999999999
Q ss_pred HhcC-----------ChHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 036461 71 CKEG-----------FVDKAKELFLKMKDENINPNVVTYNSLIH 103 (369)
Q Consensus 71 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (369)
...| ++++|++.|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8875 788888888888874 556555544433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.2e-05 Score=52.84 Aligned_cols=80 Identities=14% Similarity=0.023 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 036461 37 VALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKC 116 (369)
Q Consensus 37 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 116 (369)
.|+..|++..+.+ |.+...+..+..++...|++++|+..|++..... +.+...|..+..++...|++++|..
T Consensus 3 ~a~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQG-------TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 4666777777655 4556677777777777777777777777776652 3356667777777777777777777
Q ss_pred HHHHHHhc
Q 036461 117 LFIEMMDQ 124 (369)
Q Consensus 117 ~~~~~~~~ 124 (369)
.|++....
T Consensus 75 ~~~~al~~ 82 (115)
T 2kat_A 75 AWESGLAA 82 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.15 E-value=2.2e-05 Score=50.09 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHH
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALC 351 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 351 (369)
.+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44444555555555555555555555443 3344455555555555555555555555554431 113344444444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-05 Score=56.39 Aligned_cols=99 Identities=12% Similarity=-0.000 Sum_probs=76.8
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCCh----------HHHHHHHHHhHhCCCCCCHHhH
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFV----------DKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
..+.+.+++|++.++...+.+ |.+...|..+..++...+++ ++|+..|++.++.. |.+..+|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~ 83 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHH
Confidence 345677999999999999987 66889999999999988765 58999999988863 3367788
Q ss_pred HHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 036461 99 NSLIHGFCYAN-----------DWNEAKCLFIEMMDQGVQPNVVSFNVIM 137 (369)
Q Consensus 99 ~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (369)
..+..+|...| ++++|+..|++.++. .|+...|...+
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88888888764 788888888888775 45555444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2.5e-05 Score=51.13 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=56.0
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
|.++.+|..+..++.+.|++++|+..|+++.+.+ |.+...|..+..++...|++++|++.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4567788889999999999999999999998876 45677888999999999999999999988765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.98 E-value=4.4e-05 Score=49.90 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 269 DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
+...+..+..+|...|++++|+..|+++.+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555555556666666666666655554 33455555556666666666666666555543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00043 Score=56.14 Aligned_cols=50 Identities=10% Similarity=-0.112 Sum_probs=31.6
Q ss_pred CCcCHhHHHHHHHHHHh--cC---ChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHH
Q 036461 15 CEPNVFTYNTLINGLCR--TG---HTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLC 71 (369)
Q Consensus 15 ~~~~~~~~~~l~~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 71 (369)
.|.+..+|...+++... .+ +..+|+.+|+++.+.+ |.....|..+..++.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-------P~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-------PEFTYARAEKALVDI 244 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH
Confidence 46777888887766543 23 3467888899888876 333455555444443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00048 Score=58.11 Aligned_cols=100 Identities=11% Similarity=-0.039 Sum_probs=73.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCC-CCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-----C--CCCCH
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANGNGE-FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-----N--INPNV 95 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~ 95 (369)
..+..+.+.|++++|+.++++....... .+...+....+++.++.+|...|++++|+.+++++... | .+...
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3455677889999999999999875422 11111223567899999999999999999999987642 2 11124
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (369)
.+++.|...|...|++++|+.++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5678888999999999999998888754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00017 Score=60.79 Aligned_cols=93 Identities=6% Similarity=-0.166 Sum_probs=65.3
Q ss_pred hcCChhHHHHHHHHHHcCCCC-CCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-----C--CCCCHHhHHHHH
Q 036461 31 RTGHTIVALNLFEEMANGNGE-FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-----N--INPNVVTYNSLI 102 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~ 102 (369)
..|++++|+.++++....... .+...+....+++.|..+|...|++++|+.++++.... | .+....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887753211 11111222467888999999999999999998887542 2 112245678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 036461 103 HGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~ 123 (369)
..|..+|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888887754
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0002 Score=46.41 Aligned_cols=83 Identities=12% Similarity=0.048 Sum_probs=54.4
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTW-AYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSG 319 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (369)
....+...|++++|...++.+.+.. +.+.. .+..+..++...|++++|...|+++.... +.+...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------H
Confidence 4556667788888888888777753 33556 77777777888888888888888877664 333333311 4
Q ss_pred CHHHHHHHHHhccc
Q 036461 320 RLKIAWELFRSLPR 333 (369)
Q Consensus 320 ~~~~a~~~~~~~~~ 333 (369)
.+.++...|++...
T Consensus 76 ~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 76 MVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHHhc
Confidence 55666666665543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00021 Score=60.19 Aligned_cols=62 Identities=3% Similarity=-0.290 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRIL-----K--YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
+++.++.+|...|++++|..++++++.. | .+....+++.|...|...|++++|..+++++.+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4445555555555555555555554421 1 011123445555555555555555555555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00075 Score=43.11 Aligned_cols=67 Identities=12% Similarity=-0.009 Sum_probs=38.1
Q ss_pred CcCHhHHHHHHHHHHhcCC---hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 16 EPNVFTYNTLINGLCRTGH---TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
+.++..+..+..++...++ .++|..++++..+.+ |.++.....+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455555555555544333 456666666666654 344555556666666666666666666666554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00077 Score=43.58 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=29.1
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 208 NGYCKNKEIEGALSLYSEMLSKGIKPDVV-IYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
..+...|++++|...++++.+..+. +.. .+..+..++...|++++|...++...+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555555554222 333 4555555555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00061 Score=57.49 Aligned_cols=91 Identities=10% Similarity=-0.092 Sum_probs=47.5
Q ss_pred HHHHhcccHHHHHHHHHHHHHcC---CCcC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C--CCCCHHHH
Q 036461 243 IGLFEIHQVERAFKLFDEMQRHG---VAAD----TWAYRTFIDGLCKNGYIVEAVELFRTLRIL-----K--YELDIRAY 308 (369)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~ 308 (369)
..+...|++++|..++++.++.. ..|+ ..+++.++.+|...|++++|+.++++++.. | .+....++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445566666666666555321 1111 234555566666666666666666655422 1 01122345
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 309 NCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 309 ~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
+.|...|...|++++|..+++++.+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5566666666666666666666555
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.021 Score=46.46 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=28.5
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
+..++..+...+...|++++|...++++...+ |+...+..+...+.-.|++++|.+.|+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33344444443444444444444444444432 34334444444444444444444444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0011 Score=42.29 Aligned_cols=67 Identities=15% Similarity=-0.011 Sum_probs=45.1
Q ss_pred CcCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 267 AADTWAYRTFIDGLCKNGY---IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 267 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
+.++..+..+..++...++ .++|..++++..... +.++.....+...+...|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456666666666654443 577777777777665 556667777777777777777777777777665
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00079 Score=46.93 Aligned_cols=89 Identities=13% Similarity=0.048 Sum_probs=70.5
Q ss_pred cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCCHH
Q 036461 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG---YIVEAVELFRTLRILKYEL--DIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 322 (369)
......+.+.|.+..+.+. ++..+...+..++++++ +.++++.+++.+.+.. .| +...+-.+.-+|.+.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence 3456677777877777654 78888888999999988 6779999999998865 34 4667778888899999999
Q ss_pred HHHHHHHhcccCCcccCH
Q 036461 323 IAWELFRSLPRGVLIADV 340 (369)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~ 340 (369)
+|.+.++.+++. .|+.
T Consensus 89 ~A~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 89 KALKYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHhc--CCCC
Confidence 999999999885 5543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0045 Score=42.56 Aligned_cols=105 Identities=11% Similarity=0.063 Sum_probs=73.4
Q ss_pred CcCHhHHHHHHHHHHhcCCh------hHHHHHHHHHHcCCCCCCcccccch-hhHHHHHHHH------HhcCChHHHHHH
Q 036461 16 EPNVFTYNTLINGLCRTGHT------IVALNLFEEMANGNGEFGVVCKPNT-VTYTTIIDGL------CKEGFVDKAKEL 82 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~------~~~~~~~~a~~~ 82 (369)
+-|+.+|-..+...-+.|++ ++.+++|+++...- ||+. ..|...+..+ ...++.++|.++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-------Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~v 82 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-------PPDKYGQNESFARIQVRFAELKAIQEPDDARDY 82 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-------CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-------CccccccHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 56888999999999999999 89999999998864 5542 2222222222 224678888888
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036461 83 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQP 128 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (369)
|+.+.+..-. =...|......-.++|+...|.+++.+.+..+..|
T Consensus 83 y~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 83 FQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 8887654222 26666666777777888888888888877765443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.02 Score=44.71 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc-CChHH
Q 036461 146 MDEASRLLELMIQIGVR-PNAFVYNTLMDGFCLT-----GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKN-KEIEG 218 (369)
Q Consensus 146 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 218 (369)
...|...+++.++.... .+...|..+...|... |+.++|.+.|++....+..-+..++......++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 35666667777765311 1245677777777774 78888888888887775212366667777777764 78888
Q ss_pred HHHHHHHHHhCCCC--CcHHhH
Q 036461 219 ALSLYSEMLSKGIK--PDVVIY 238 (369)
Q Consensus 219 a~~~~~~~~~~~~~--~~~~~~ 238 (369)
+.+.+++.+...+. |+....
T Consensus 259 a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHH
Confidence 88888888876554 444333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0046 Score=43.08 Aligned_cols=66 Identities=11% Similarity=-0.009 Sum_probs=30.5
Q ss_pred cchhhHHHHHHHHHhcC---ChHHHHHHHHHhHhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 58 PNTVTYTTIIDGLCKEG---FVDKAKELFLKMKDENINP--NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
++..+...+..++++.+ +.++++.+++.+.+.+ .| +...+..+.-+|.+.+++++|.+.++.+++.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44444445555555544 3335555555544432 11 2333334444445555555555555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.23 E-value=3.6e-08 Score=81.19 Aligned_cols=265 Identities=11% Similarity=0.128 Sum_probs=184.2
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
.+..|..|..+....+++.+|++.|-+ . -|+..|..++....+.|.+++-.+++...++..-.|. .=+.++-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--A----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--C----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--C----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHH
Confidence 467899999999999999988877632 2 2667788899999999999999999988776644443 3457889
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (369)
+|++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+.. |..|..++.+.|++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 9999998877554432 35665667788889999999988888765543 4455566777888877
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036461 219 ALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
|.+.-++ ..+..||..+-.+|...+.+.-|...--.++-+ ++-+..++..|...|.+++-+.+++....
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 7654222 236678888888888888887766554444422 12334567778888888888888888775
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC-Cccc------CHHHHHHHHHHHHhcCchHHHH
Q 036461 299 LKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG-VLIA------DVVTYNIMIHALCADGKMDKAR 360 (369)
Q Consensus 299 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~A~ 360 (369)
.. ......|+.|.-.|.+- ++++..+.++..-.+ +++. ....|.-++-.|.+-..++.|.
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 43 56777888888888775 456655555544331 1111 2335666666676666666654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0033 Score=41.12 Aligned_cols=74 Identities=12% Similarity=-0.070 Sum_probs=57.1
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
+.+...+..+...+.+.|++..|+..|+.+.+...+......+...++..+..++.+.|+++.|+..++++.+.
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34667788899999999999999999999887531100001345677888999999999999999999998874
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.032 Score=51.57 Aligned_cols=76 Identities=12% Similarity=0.084 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc
Q 036461 134 NVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKN 213 (369)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (369)
..++..+.+.|.++.|.++.+. +. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4455555556666665544421 11 0122334556666666654322 3445666666666666
Q ss_pred CChHHHHHHHHHHH
Q 036461 214 KEIEGALSLYSEML 227 (369)
Q Consensus 214 ~~~~~a~~~~~~~~ 227 (369)
++++.|...|.++.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 66666666666543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0056 Score=41.00 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=62.2
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE---AVELFRTLRILKYEL--DIRAYNCLIDGL 315 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 315 (369)
++...........+.+-+......|. ++..+-..+..++.++.+... ++.+++.+...+ .| .....-.|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 33444445556666666666655543 677777778888888776555 777888777654 23 344555667788
Q ss_pred HcCCCHHHHHHHHHhcccC
Q 036461 316 CKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 316 ~~~g~~~~a~~~~~~~~~~ 334 (369)
.+.|+++.|.+.++.+++.
T Consensus 85 yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHh
Confidence 8888888888888888774
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.074 Score=41.55 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-CCh
Q 036461 111 WNEAKCLFIEMMDQGVQPN---VVSFNVIMNELCKN-----GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT-GRV 181 (369)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 181 (369)
...|...+++.++. .|+ ...|..+...|... |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 56778888888875 344 45788888888884 99999999999999986433477777888888885 999
Q ss_pred HHHHHHHHHHHhcCCC
Q 036461 182 NRAEELFVSMESMGCK 197 (369)
Q Consensus 182 ~~a~~~~~~~~~~~~~ 197 (369)
+.+.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999987533
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.012 Score=38.35 Aligned_cols=63 Identities=11% Similarity=-0.038 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcC------CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHG------VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
.+..+...+...++++.|...++...+.. -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33444555555555555555555544320 1123445555555556666666666666555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.043 Score=39.34 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=21.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
...|+++.|.++.+.+ .+...|..+.......|+++-|...|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554433 13344555555555555555555555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.098 Score=48.32 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=71.3
Q ss_pred HHHHHhCCChhHHHH-HHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC
Q 036461 137 MNELCKNGKMDEASR-LLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (369)
.......+++++|.+ ++.. ++ +......++..+.+.|.++.|.++.+. +. . -.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~----~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPD-------QD-Q----KFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-H----HHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCC-------cc-h----heehhhhcCC
Confidence 344456788888876 4421 11 122336777888889999998877532 11 1 1234567899
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHH
Q 036461 216 IEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQ 262 (369)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (369)
++.|.++.+.+ .+...|..+...+.+.++++.|...|.++.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 99999885432 367889999999999999999999998864
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.045 Score=37.76 Aligned_cols=64 Identities=9% Similarity=0.105 Sum_probs=37.4
Q ss_pred cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036461 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLID 313 (369)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 313 (369)
.+++++|.++|+.+++.+-.. ...+....+--.+.|++..|.+++.+....+ +.+...+...++
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHHH
Confidence 356677777777665542222 5555555555666777777777777777655 223344444443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.078 Score=38.00 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=20.8
Q ss_pred hcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036461 72 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIE 120 (369)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 120 (369)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 345555555544433 1344455555555555555555555544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.61 E-value=0.44 Score=44.08 Aligned_cols=154 Identities=13% Similarity=0.112 Sum_probs=63.7
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHH--HHHHHHHhhcCChH
Q 036461 140 LCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSY--SILINGYCKNKEIE 217 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~ 217 (369)
+...|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+.+.+.... .|....- ..+..+|+..|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHH
Confidence 334455555555555544421 1111112222223335566666666666555432 2222211 12334455566665
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Q 036461 218 GALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI-VEAVELFRTL 296 (369)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 296 (369)
....+++.+.... ..+......+..++...|+.+.+.+++..+.+.+ .|....-..+.-+....|+. .++...+..+
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 5555666655431 1122222233333333444444555554444332 22222222222233333332 4455555555
Q ss_pred H
Q 036461 297 R 297 (369)
Q Consensus 297 ~ 297 (369)
.
T Consensus 656 ~ 656 (963)
T 4ady_A 656 T 656 (963)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.034 Score=37.27 Aligned_cols=83 Identities=10% Similarity=0.014 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHH---HHHHHHHhHhCCCC-CCHHhHHHHHHHHHhcCC
Q 036461 35 TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDK---AKELFLKMKDENIN-PNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 35 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 110 (369)
...+.+-|+.....+ +++..+-..+..++.+..+... ++.+++.+.+.+.+ ........|.-++.+.|+
T Consensus 17 l~~~~~~y~~e~~~~-------~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHS-------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccC-------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 334444444444433 3555666666666666655444 66666666554211 123334445556666666
Q ss_pred HHHHHHHHHHHHhc
Q 036461 111 WNEAKCLFIEMMDQ 124 (369)
Q Consensus 111 ~~~a~~~~~~~~~~ 124 (369)
+++|.+.++.+++.
T Consensus 90 Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 90 YEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00074 Score=56.35 Aligned_cols=83 Identities=11% Similarity=0.180 Sum_probs=58.5
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
.+.+|..|..+..+.+++.+|++.|-+ ..|+..|..++....+.|.+++-...+...++.. .++..
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~I 118 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYV 118 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--ccccc
Confidence 566788888888888888888776532 2456778888888888888888888776665542 24444
Q ss_pred HHHHHHHHHhcCCHHHH
Q 036461 98 YNSLIHGFCYANDWNEA 114 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a 114 (369)
=+.|+.+|++.++..+-
T Consensus 119 DteLi~ayAk~~rL~el 135 (624)
T 3lvg_A 119 ETELIFALAKTNRLAEL 135 (624)
T ss_dssp THHHHHHHHTSCSSSTT
T ss_pred HHHHHHHHHhhCcHHHH
Confidence 45677788877765543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.09 E-value=0.89 Score=42.15 Aligned_cols=261 Identities=11% Similarity=0.024 Sum_probs=139.9
Q ss_pred HHHHhcCChHHHHHHHHHhHhCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCChhhHHHHHH
Q 036461 68 DGLCKEGFVDKAKELFLKMKDENINPNV--VTYNSLIHGFCYANDWNEAKCLFIEMMDQGV-------QPNVVSFNVIMN 138 (369)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~ 138 (369)
-+....|+.++++.++......+...+. ..=..+.-+....|..+++..++.......- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3455678888888887766542111122 2222334445555655567777776654321 011111122222
Q ss_pred HHHhCCC-hhHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC
Q 036461 139 ELCKNGK-MDEASRLLELMIQIGVRPNA--FVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (369)
Q Consensus 139 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (369)
++...|. -+++...+..+..... +.. ..-..+...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 3333332 2455566655554321 111 122234445566778777777777766542 2233333344444557788
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhH--HHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 216 IEGALSLYSEMLSKGIKPDVVIY--NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
.+.+..+++.+... ..|....- ..+..+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888887764 22222222 234556777888887777888887642 223333333333445567777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHhccc
Q 036461 294 RTLRILKYELDIRAYNCLIDGLCKSGRL-KIAWELFRSLPR 333 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 333 (369)
+.+.+.+ .|....-..+.-+....|.. .++..++..+..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6665543 44444444444455555553 567778887765
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.089 Score=47.44 Aligned_cols=51 Identities=10% Similarity=0.041 Sum_probs=25.8
Q ss_pred HHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 314 GLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 314 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
.|...|+++-|+.+-++....- +-+-.+|..|..+|...|+++.|+-.++.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 3444555555555555554431 11344555555555555555555555444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.11 Score=46.99 Aligned_cols=55 Identities=18% Similarity=0.061 Sum_probs=42.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 277 IDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
..-|...|+++-|+.+-++..... |.+..+|..|..+|...|+++.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344566788888888888887764 5567788888888888888888888887764
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.08 Score=44.02 Aligned_cols=75 Identities=11% Similarity=0.071 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChhhHHH
Q 036461 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMD-----QGVQPNVVSFNV 135 (369)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 135 (369)
.+...++..+...|++++++..+..+... .|.+...|..++.++.+.|+..+|++.|+++.. .|+.|+..+-..
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 45666777888888888888888887765 466888888888999999999999888887754 388887776543
Q ss_pred H
Q 036461 136 I 136 (369)
Q Consensus 136 l 136 (369)
.
T Consensus 251 ~ 251 (388)
T 2ff4_A 251 N 251 (388)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.4 Score=32.48 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=73.3
Q ss_pred hcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHH
Q 036461 72 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASR 151 (369)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (369)
-.|..++..++..+.... .+..-||-++--....-+-+-..++++.+-+ -.|.. ..|+......
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis----------~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLD----------KCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGG----------GCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcH----------hhhcHHHHHH
Confidence 356666666666666553 2555555555555555554444444444422 12221 1223333333
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 036461 152 LLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 231 (369)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (369)
.+-.+ + .+...+...+..+...|.-++-.+++..+.... +|++...-.+..+|.+.|+..++.+++.++-++|+
T Consensus 83 C~~~~---n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh---c--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 32222 1 123344455566666677777777666654322 55666666666777777777777777777666664
Q ss_pred C
Q 036461 232 K 232 (369)
Q Consensus 232 ~ 232 (369)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.4 Score=32.44 Aligned_cols=67 Identities=15% Similarity=-0.007 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCc
Q 036461 269 DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVL 336 (369)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 336 (369)
+...+...+..+...|.-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3445555566666667666666666665332 256666666677777777777777777766666554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.17 E-value=1.3 Score=42.70 Aligned_cols=130 Identities=12% Similarity=0.145 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHH
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIGVRPN----AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILI 207 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 207 (369)
-|..++..+-+.+.++.+.++-...++...+.+ ...|..+.+.+...|++++|...+-.+..... -...+..++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 456677777777777777777766665432212 12466677777888888888777777765532 234455555
Q ss_pred HHHhhcC------------ChHHHHHHHHHHHhC--CCCCcHHhHHHHHHHHHhcccHHHHH-HHHHHHHH
Q 036461 208 NGYCKNK------------EIEGALSLYSEMLSK--GIKPDVVIYNTLFIGLFEIHQVERAF-KLFDEMQR 263 (369)
Q Consensus 208 ~~~~~~~------------~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 263 (369)
...+..| ..++..+++..-.+. .+...+.-|..|-..+...|++.+|- .+|+.+.+
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 5555443 344444554433221 11112233555555556677776544 44455443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=95.06 E-value=0.15 Score=32.27 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIID 68 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (369)
+.++.++.+...+.-|++....+.+++|.+.+++..|+++|+-+...- .+...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-------~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-------GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-------cCchhhHHHHHH
Confidence 355677778888889999999999999999999999999999988754 233455766654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.27 Score=33.13 Aligned_cols=73 Identities=16% Similarity=0.062 Sum_probs=54.3
Q ss_pred CCCcCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccC
Q 036461 265 GVAADTWAYRTFIDGLCKNGY---IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIAD 339 (369)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 339 (369)
+..|+..+--.+..++.++.+ ..+++.+++.+.+.+.......+-.+.-++.+.|+++.|.+..+.+.+. .|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 445777777778888887765 4568888888887652234566777788899999999999999998875 454
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.19 Score=35.37 Aligned_cols=61 Identities=8% Similarity=-0.118 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcC-CCcC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHG-VAAD-------TWAYRTFIDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (369)
++-.-++.+...+.++.|+-+.+.+.... ..|+ ..++..+..++...|++..|...|++.+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34445666777788888877777654321 1233 1255667777788888888888888764
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.59 E-value=1.9 Score=41.67 Aligned_cols=132 Identities=11% Similarity=0.047 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--ch--HHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 036461 166 FVYNTLMDGFCLTGRVNRAEELFVSMESMGCK--HN--VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241 (369)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (369)
.-|..++..+.+.+.++.+.++-....+...+ ++ ...|..+...+...|++++|...+-.+...... ...+..|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 45777888899999999999888877654322 22 225788899999999999999999888765433 3444555
Q ss_pred HHHHHhc------------ccHHHHHHHHHHHHH-c-CCCcCHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHc
Q 036461 242 FIGLFEI------------HQVERAFKLFDEMQR-H-GVAADTWAYRTFIDGLCKNGYIVEAV-ELFRTLRIL 299 (369)
Q Consensus 242 ~~~~~~~------------~~~~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~ 299 (369)
+...+.. |..++..+++..--+ . .+...+.-|..|-..+...|++.+|- -+|+.+.+.
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 5544433 445666666654322 1 11111233455555556667766554 456666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.3 Score=40.58 Aligned_cols=55 Identities=5% Similarity=0.023 Sum_probs=27.8
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTL 296 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (369)
++..+...|+++++...+..+.... +.+...+..++.++.+.|+..+|++.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444445555555555555544432 334445555555555555555555555544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.36 E-value=0.69 Score=31.64 Aligned_cols=72 Identities=15% Similarity=0.032 Sum_probs=55.0
Q ss_pred CCcCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccC
Q 036461 266 VAADTWAYRTFIDGLCKNGY---IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIAD 339 (369)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 339 (369)
..|+..+--.+..++.++.+ ..+++.+++.+...+........-.|.-++.+.|++++|.+..+.+++. .|+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 35788888888888888775 4578888888887642234556667778899999999999999999885 454
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=2.7 Score=37.30 Aligned_cols=310 Identities=11% Similarity=0.054 Sum_probs=152.7
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYA 108 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (369)
..+.|++..+..+...+...- +.|- ..|..+...+ ......+....+.+... .+.....-...+..+.+.
T Consensus 16 a~~~~~~~~~~~l~~~l~~~p------L~~y-l~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~ 85 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYP------LYPY-LEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELARR 85 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTST------THHH-HHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHhhcCCC------cHHH-HHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhC
Confidence 445678877776655543211 1111 1232222221 12245555554444332 122223334455666677
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHH--HHH
Q 036461 109 NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNR--AEE 186 (369)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~ 186 (369)
+++.....++.. .+.+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|.... ...
T Consensus 86 ~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~ 159 (618)
T 1qsa_A 86 EDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLE 159 (618)
T ss_dssp TCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHH
Confidence 777776664432 13344444456666777788777766666665544 2234455666666665554332 222
Q ss_pred HHHHHHhcC-----------CCchHHH-HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHH---hHHHHHHHHHhcccH
Q 036461 187 LFVSMESMG-----------CKHNVFS-YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV---IYNTLFIGLFEIHQV 251 (369)
Q Consensus 187 ~~~~~~~~~-----------~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~ 251 (369)
-++.+...+ ++++... ...++..+. ++..+...... ..++.. .+...+.-+ ...+.
T Consensus 160 R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rl-ar~d~ 230 (618)
T 1qsa_A 160 RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----TGATDFTRQMAAVAFASV-ARQDA 230 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----SCCCHHHHHHHHHHHHHH-HHHCH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc-----cCCChhhHHHHHHHHHHH-HhcCH
Confidence 222222222 1111111 111111111 11222211111 111221 111112222 23477
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHH----HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 036461 252 ERAFKLFDEMQRHGVAADTWAYR----TFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 327 (369)
+.|...+....+.. ..+..... .++......+...++...+...... ..+.......+....+.|+++.|...
T Consensus 231 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 231 ENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888776532 22333222 2333333445355666666654433 34444455555555677999999999
Q ss_pred HHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 328 FRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
|+.|..... .......-+.+++...|+.++|..+|+++.
T Consensus 308 ~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 308 LARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 998876422 234444556778888899999999888764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.18 E-value=2.3 Score=36.05 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHH----cCCCcc--HHH
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQ--GVQPN---VVSFNVIMNELCKNGKMDEASRLLELMIQ----IGVRPN--AFV 167 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~ 167 (369)
..|...+...|++.+|..++..+... |.... ...+...++.|...+++..|..++..+.. ...+|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34556666666666666666665432 11100 22344455566666666666666655432 111111 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 036461 168 YNTLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
+...+..+...+++.+|.+.|..+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344455555566666666555554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.82 E-value=1 Score=31.82 Aligned_cols=65 Identities=9% Similarity=-0.012 Sum_probs=48.4
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc-------hhhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-------TVTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
..++..-++.+...|.++.|+-+.+.+..... .+|+ ..++..+..++...+++.+|...|++..+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~-----~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSN-----NNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc-----CCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33556668889999999999998887655321 1122 23677888999999999999999999743
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.75 E-value=0.78 Score=29.10 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036461 251 VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLI 312 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 312 (369)
.-+..+-++.+...+..|++......+++|.+.+++..|.++++-++..- .+...+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 33455555555556666666666666666666666666666666665432 22233444444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.56 E-value=1.1 Score=30.23 Aligned_cols=71 Identities=14% Similarity=0.065 Sum_probs=51.8
Q ss_pred CCCCcHHhHHHHHHHHHhccc---HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 230 GIKPDVVIYNTLFIGLFEIHQ---VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
+..|+..+--.+..++.+..+ ..+++.++..+.+.+..-....+-.+.-++.+.|++++|.+..+.+.+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 445666666666666666554 55788888888876532345566777888999999999999999998763
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.49 Score=31.80 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHH
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIID 68 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (369)
..+-++.+...++-|++......+++|.+.+++..|+++|+-+...- .+...+|..+++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-------~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-------GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-------CCchhhHHHHHH
Confidence 45666777778889999999999999999999999999999988764 344556766654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=92.39 E-value=1.7 Score=29.30 Aligned_cols=61 Identities=8% Similarity=0.034 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036461 252 ERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLID 313 (369)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 313 (369)
-+..+-++.+...++.|++......+++|.+.+|+..|.++++-++..- .+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3455555666666667777777777777777777777777777766442 233444555443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.76 E-value=4.1 Score=34.34 Aligned_cols=97 Identities=10% Similarity=-0.057 Sum_probs=53.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc---CCCccHHH--H
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQ--GVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI---GVRPNAFV--Y 168 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 168 (369)
.++..+...|.+.|+++.|.+.|.++... +...-...+...++.+...+++..+...+.++... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35556667777777777777777776653 22223445566666777777777777777665432 22222211 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 036461 169 NTLMDGFCLTGRVNRAEELFVSME 192 (369)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~ 192 (369)
..-+..+...+++..|...|-+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHh
Confidence 111222345566777766666553
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.57 E-value=4.9 Score=31.05 Aligned_cols=54 Identities=24% Similarity=0.269 Sum_probs=33.5
Q ss_pred HHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 245 LFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
..+.|+.+.++.....-++.. +-|...-..+++.+|-.|+++.|..=++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445566666666666655553 345666666666666677777776666666654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=89.36 E-value=8.3 Score=31.94 Aligned_cols=236 Identities=9% Similarity=-0.059 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhc-CChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKE-GFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
.+...|...|.+.|+.++..+++.....--..+. -.-.......++..+... +..+.-.++..+..+..-. +..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSIS--KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC--HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4677889999999999999888887654321000 011234567778777764 3444445555444432100 11223
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCccH
Q 036461 99 ------NSLIHGFCYANDWNEAKCLFIEMMDQGVQPN-----VVSFNVIMNELCKNGKMDEASRLLELMIQIG--VRPNA 165 (369)
Q Consensus 99 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~ 165 (369)
..++..|...|++.+|.+++.++.+.=-..| ...+..-+..|...+++.++...+....... +.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 2578999999999999999998876411112 2245556678889999999999998876431 22333
Q ss_pred HHHH----HHHHHHH-hcCChHHHHHHHHHHHhc-CC--Cc---hHHHHHHHHHHHhhcCChHHHHHHHH-HHHhCCCCC
Q 036461 166 FVYN----TLMDGFC-LTGRVNRAEELFVSMESM-GC--KH---NVFSYSILINGYCKNKEIEGALSLYS-EMLSKGIKP 233 (369)
Q Consensus 166 ~~~~----~l~~~~~-~~~~~~~a~~~~~~~~~~-~~--~~---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~ 233 (369)
.... .-+..+. ..+++..|...|-+.... .- .| +...|..+.... .++..+.-.++. .....-..|
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~p 254 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGR 254 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCc
Confidence 2221 2233456 789999998887766321 10 11 112232222222 233333222222 211111245
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHH
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEM 261 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (369)
+...+..++.++ ..+++.....++...
T Consensus 255 ei~~l~~L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 255 DIDAMKSVAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 555566666665 456777666666554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.23 E-value=6.9 Score=32.96 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCchHHH--H
Q 036461 131 VSFNVIMNELCKNGKMDEASRLLELMIQIG--VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM---GCKHNVFS--Y 203 (369)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 203 (369)
.+...+...|.+.|+++.|.+.+.++.... ...-...+-.+++.+...+++..+...+.++... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 367789999999999999999999998752 2334567778899999999999999999988532 22333321 1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 204 SILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
..-+..+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 12223345678999999888877654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.13 E-value=2.3 Score=32.76 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=38.9
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
..+.+.|++++|+.....-++.. |.|...-..++..+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-------PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34556677777777777776665 566677777777777777777777777666553
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.91 E-value=8.9 Score=30.52 Aligned_cols=168 Identities=14% Similarity=0.044 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHH----HHHHHHhCCCCCcHHhHHHH
Q 036461 166 FVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALS----LYSEMLSKGIKPDVVIYNTL 241 (369)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l 241 (369)
..|.++..-|.+.+++++|++++..-. ..+.+.|+...|-+ +++-..+.+.+++......+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 345556666777777777777765432 22344455554444 34455556788888888888
Q ss_pred HHHHHhcccHH-HHHHHHHHHHH----cC--CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036461 242 FIGLFEIHQVE-RAFKLFDEMQR----HG--VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDG 314 (369)
Q Consensus 242 ~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (369)
+..+......+ .-.++++.+++ .| ..-++.....+...|.+.|++.+|...|- .+-..+...+..++.-
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWD 174 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHH
Confidence 87776533221 23445555543 22 22367788888888888888888876553 2212245555555544
Q ss_pred HHcC---CCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 315 LCKS---GRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 315 ~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
+... |...++ +... ...+--|.-.|+...|..+++...
T Consensus 175 w~~~~~~~~~~e~--------------dlf~-~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 175 WLCQVDDIEDSTV--------------AEFF-SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHTTCCCHHHH--------------HHHH-HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCCCCcchH--------------HHHH-HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4433 332221 1111 122223456688888888887664
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.84 E-value=9.4 Score=30.69 Aligned_cols=168 Identities=13% Similarity=0.173 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHH----HHHhHhCCCCCCHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL----FLKMKDENINPNVV 96 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~ 96 (369)
.|.++..-|.+.+++++|++++-.-. ..+.+.|+...|-++ ++...+.++++|..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~ 95 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGA 95 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH
Confidence 45666666666777777666654322 223334444433333 34444556777777
Q ss_pred hHHHHHHHHHhcCCHH-HHHHHHHHHHh----cC--CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHH
Q 036461 97 TYNSLIHGFCYANDWN-EAKCLFIEMMD----QG--VQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYN 169 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (369)
....++..+.....-+ .=.++++++++ .| ..-+......+...|.+.+++.+|...|- .|..+++..+.
T Consensus 96 ~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a 171 (336)
T 3lpz_A 96 SRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLA 171 (336)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHH
Confidence 7777776666554311 11223333321 12 23466677778888888888888877763 23344445665
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 170 TLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
.++.-+...+... ..+...-..++ .|...++...|..++....+
T Consensus 172 ~mL~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 172 RMEYEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 5554444433211 12222223333 45566788888776665543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.75 E-value=12 Score=31.74 Aligned_cols=259 Identities=11% Similarity=0.122 Sum_probs=147.5
Q ss_pred CChHHHHHHHHHhHh-----CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH----hCC
Q 036461 74 GFVDKAKELFLKMKD-----ENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELC----KNG 144 (369)
Q Consensus 74 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 144 (369)
|+++.|++.+..+.+ .+..........++..|...++|+.....+.-+....... ......+++.+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 667888877766643 2334456677888899999999999888776665432121 222223333222 222
Q ss_pred ChhH--HHHHHHHHHH--cC-CCc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCch---HHHHHHHHHHHh
Q 036461 145 KMDE--ASRLLELMIQ--IG-VRP---NAFVYNTLMDGFCLTGRVNRAEELFVSMESM--GCKHN---VFSYSILINGYC 211 (369)
Q Consensus 145 ~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 211 (369)
..+. -..+.+.... .| +-. .......|...+...|++.+|.+++..+... +.... ...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1111111110 01 111 2334466788899999999999999998532 21111 345667788899
Q ss_pred hcCChHHHHHHHHHHHh----CCCCCcH--HhHHHHHHHHHhcccHHHHHHHHHHHHHc-CCCcCHHHHH----HHHHHH
Q 036461 212 KNKEIEGALSLYSEMLS----KGIKPDV--VIYNTLFIGLFEIHQVERAFKLFDEMQRH-GVAADTWAYR----TFIDGL 280 (369)
Q Consensus 212 ~~~~~~~a~~~~~~~~~----~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~ 280 (369)
..+++..|..++.++.. ....|+. ..+...+..+...+++.+|.+.|.++.+. ....+...+. .++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999988753 2222322 34566677777888999988888777542 1112322222 222222
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHhccc
Q 036461 281 CKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKS--GRLKIAWELFRSLPR 333 (369)
Q Consensus 281 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~ 333 (369)
.-.+....-..+.........-++...+..++.+|... .+++.....|.....
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 22222222223333333222235677888888888654 457777777766544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.69 E-value=9.6 Score=30.64 Aligned_cols=49 Identities=12% Similarity=-0.060 Sum_probs=31.5
Q ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 036461 267 AADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSG 319 (369)
Q Consensus 267 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (369)
.-|+.....+...|.+.+++.+|...|- .+..+....+..++.-+...+
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhc
Confidence 3467788888888999999888887762 232344456655554444433
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.10 E-value=10 Score=30.23 Aligned_cols=168 Identities=15% Similarity=0.054 Sum_probs=93.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHH----HHHHHhcCCCchHHHHHHHH
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEEL----FVSMESMGCKHNVFSYSILI 207 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~ 207 (369)
.|.++..=|.+.+++++|++++.. -...+.+.|+...|-++ ++.+.+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~---------------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ---------------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344444445555555555544432 23345667887666554 55666777888888888888
Q ss_pred HHHhhcCChH-HHHHHHHHHHh----CC--CCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 036461 208 NGYCKNKEIE-GALSLYSEMLS----KG--IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGL 280 (369)
Q Consensus 208 ~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 280 (369)
..+......+ .-.++++.+++ .| ..-++.....+...|.+.+++.+|...|- .+-.-+...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHH
Confidence 8776643222 23445555543 22 22366677788888888888888877653 11111344555444433
Q ss_pred HhC---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 281 CKN---GYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 281 ~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
... |...++--++- .. +-.|.-.|+...|..+++...+
T Consensus 176 ~~~~~~~~~~e~dlf~~--------------Ra-VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 176 LCQVDDIEDSTVAEFFS--------------RL-VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHTTCCCHHHHHHHHH--------------HH-HHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHH--------------HH-HHHHHHhcCHHHHHHHHHHHHH
Confidence 333 33333221111 11 2235567888888888776653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.42 E-value=6.9 Score=26.79 Aligned_cols=68 Identities=13% Similarity=0.042 Sum_probs=41.9
Q ss_pred CCcHHhHHHHHHHHHhccc---HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 232 KPDVVIYNTLFIGLFEIHQ---VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4455555555555555443 4466777777766432223444555666777788888888888777766
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.13 E-value=9.3 Score=28.00 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHhHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036461 74 GFVDKAKELFLKMKDENINP-NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQP 128 (369)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (369)
++...+.++|..|...|+-. -...|......+...|++.+|..+|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33456666666665544322 23445555555666666666666666666554444
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.09 E-value=12 Score=27.50 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 036461 250 QVERAFKLFDEMQRHGVAAD-TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYEL 303 (369)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 303 (369)
....+..+|..|..+|+... ...|......+...|++.+|..+|+.-++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35677777777777665433 4456677777777788888888887777766555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 369 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.79 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.78 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.57 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.54 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.52 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.52 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.52 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.5 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.49 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.44 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.43 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.42 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.07 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.03 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.03 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.02 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.97 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.96 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.96 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.92 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.91 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.89 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.87 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.85 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.8 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.79 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.78 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.66 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.59 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.54 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.5 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.47 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.44 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.42 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.37 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.35 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.35 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.34 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.33 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.28 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.25 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.25 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.16 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.16 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.15 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.14 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.91 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.81 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.8 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.54 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.48 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.39 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.18 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.51 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.28 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.21 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 95.04 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.86 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.6 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 94.05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.1e-24 Score=181.67 Aligned_cols=339 Identities=16% Similarity=0.070 Sum_probs=203.2
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|++.|+++.+.. |-++.++..+..++.+.|++++|+..|+++.+.+ |.+..+|..++.++.+.|++++|+
T Consensus 16 ~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~l~~~~~~~g~~~~A~ 87 (388)
T d1w3ba_ 16 EAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHhhhhccccccc
Confidence 36888888888774 5567888888889999999999999999988876 456788888889999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCC----------------------------------HHHHHHHHHHHHhcCC
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYAND----------------------------------WNEAKCLFIEMMDQGV 126 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------------------~~~a~~~~~~~~~~~~ 126 (369)
..+........ .+..............+. ...+...+.+.....
T Consensus 88 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 165 (388)
T d1w3ba_ 88 EHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred ccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-
Confidence 98888876532 233333333333333333 333333333333321
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHH
Q 036461 127 QPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSIL 206 (369)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (369)
+.+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++...... +.+...+..+
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 243 (388)
T d1w3ba_ 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNL 243 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHH
Confidence 1233444555555555666666666666655543 2244555556666666666666666666655543 3344455555
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCH
Q 036461 207 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI 286 (369)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 286 (369)
...+.+.|++++|...|++..+..+. +..++..+...+...|++++|...++...... +.+...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 321 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCH
Confidence 55666666666666666666554322 34455555666666666666666666555542 34455555566666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCc
Q 036461 287 VEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGK 355 (369)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 355 (369)
++|+..++++.+.. |.+..++..++.+|...|++++|...|+++++.. +-+..+|..+..+|.+.||
T Consensus 322 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 322 EEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 66666666655443 3345555566666666666666666666655532 1134555556665555553
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.2e-22 Score=169.08 Aligned_cols=305 Identities=16% Similarity=0.065 Sum_probs=252.3
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhH-----------------
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY----------------- 63 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 63 (369)
++|+..|++.++.. |.++.+|..+..++.+.|++++|+..+....... +.+....
T Consensus 50 ~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 121 (388)
T d1w3ba_ 50 DRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-------PDFIDGYINLAAALVAAGDMEGAV 121 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccccccccccc-------cccccccccccccccccccccccc
Confidence 47999999999885 6678899999999999999999999999998865 2222222
Q ss_pred -----------------HHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036461 64 -----------------TTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGV 126 (369)
Q Consensus 64 -----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (369)
..........+....+...+...... .+.+...+..+...+...|++++|...+++..+..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~- 199 (388)
T d1w3ba_ 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD- 199 (388)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-
T ss_pred cccccccccccccccccccccccccccchhhhhHHHHHHhhcc-CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-
Confidence 22233333445555566666655554 23466778888899999999999999999998864
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHH
Q 036461 127 QPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSIL 206 (369)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (369)
+-+...+..+...+...|++++|...++.....+ +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+
T Consensus 200 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 277 (388)
T d1w3ba_ 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNL 277 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHH
T ss_pred cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3366788899999999999999999999998876 4467788889999999999999999999998875 5667889999
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCH
Q 036461 207 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI 286 (369)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 286 (369)
...+...|++++|...++...... +.+...+..+...+...|++++|+..+++..+.. +-+..++..+..+|...|++
T Consensus 278 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 355 (388)
T d1w3ba_ 278 ANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998864 4477888899999999999999999999998864 34678889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 036461 287 VEAVELFRTLRILKYELDIRAYNCLIDGLCKSGR 320 (369)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (369)
++|...|+++.+.. |.+..++..++.+|.+.|+
T Consensus 356 ~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 356 QEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 99999999999775 5568899999999988775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.2e-16 Score=127.70 Aligned_cols=277 Identities=13% Similarity=0.008 Sum_probs=156.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHH
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN 99 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (369)
..+......+.+.|++++|+..|+++.+.+ |.+..+|..+..++...|++++|...|.+..+.. |-+...+.
T Consensus 20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 91 (323)
T d1fcha_ 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALM 91 (323)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccc
Confidence 334456777889999999999999999877 5568899999999999999999999999988753 34678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (369)
.+..+|...|++++|.+.+++..... |+.............. .+.......+..+...+
T Consensus 92 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 150 (323)
T d1fcha_ 92 ALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDS 150 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHH
T ss_pred cccccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhh
Confidence 89999999999999999999987653 2211110000000000 00000001111122233
Q ss_pred ChHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHH
Q 036461 180 RVNRAEELFVSMESMG-CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLF 258 (369)
Q Consensus 180 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (369)
.+.+|.+.+.+..... ...+..++..+...+...|++++|+..+++.....+. +...+..+..++...|++++|...+
T Consensus 151 ~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 229 (323)
T d1fcha_ 151 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAY 229 (323)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHH
Confidence 3444444444443321 1123344444555555555555555555555544222 3444555555555555555555555
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----------CCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 036461 259 DEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL----------KYELDIRAYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 327 (369)
+++.+.. +-+...+..++.+|.+.|++++|+..|+++++. ........|..+-.++...|+.+.+...
T Consensus 230 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 230 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555432 223445555555555555555555555554431 1122334455555555555555544433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=4e-16 Score=126.13 Aligned_cols=275 Identities=13% Similarity=-0.012 Sum_probs=190.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 036461 63 YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK 142 (369)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (369)
.......+.+.|++++|+..|+++.+.. |.+..+|..+..++...|++++|...|.+..+..+ -+...+..+..++..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccc
Confidence 3455666777888888888888877753 33677777778888888888888888887776542 255667777777777
Q ss_pred CCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHH
Q 036461 143 NGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSL 222 (369)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (369)
.|++++|.+.++.+.... |+............. ..+.......+..+...+...+|...
T Consensus 100 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHH
Confidence 888888887777776653 221100000000000 00000111112223344567788888
Q ss_pred HHHHHhCCC-CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 036461 223 YSEMLSKGI-KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301 (369)
Q Consensus 223 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 301 (369)
+.+.....+ .++..++..+...+...|++++|...++...... +-+...+..+..++...|++++|...|+++.+..
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 236 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ- 236 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-
Confidence 888776533 3356778888899999999999999999998864 3468889999999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCC----------cccCHHHHHHHHHHHHhcCchHHHHHH
Q 036461 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGV----------LIADVVTYNIMIHALCADGKMDKARDL 362 (369)
Q Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 362 (369)
+.+..++..++.+|.+.|++++|+..|++.++.. .......|..+-.++...|+.+.+...
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5578899999999999999999999999887521 111234566777777777877665443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=9.4e-12 Score=99.19 Aligned_cols=215 Identities=12% Similarity=0.034 Sum_probs=165.0
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC-ChHHHHHHHHHhHhCCCCCCHHh
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG-FVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
..+|+.+...+.+.+.+++|+.+++++++.+ |.+..+|+....++...| ++++|+..++++.+.. +-+..+
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-------P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a 114 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQV 114 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhH
Confidence 4467778888888999999999999999977 566788899988888876 5899999999988763 347888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCL 177 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (369)
|..+..++.+.|++++|+..++++++..+ -+...|..+..++...|++++|+..++.+++.+ +.+...|+.+...+.+
T Consensus 115 ~~~~~~~~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~ 192 (315)
T d2h6fa1 115 WHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISN 192 (315)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHH
Confidence 99999999999999999999999988743 378888899999999999999999999999886 3467778777777666
Q ss_pred cCC------hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC-cHHhHHHHHHHH
Q 036461 178 TGR------VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP-DVVIYNTLFIGL 245 (369)
Q Consensus 178 ~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 245 (369)
.+. +++|++.+..+.... |.+...|..+...+... ..+++...+....+....+ +...+..++..|
T Consensus 193 ~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 193 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred ccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 655 567888888887775 55677777666655443 4567777777776643322 333444454444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=9.6e-12 Score=101.29 Aligned_cols=278 Identities=9% Similarity=-0.040 Sum_probs=187.7
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCC--CC---C
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN--IN---P 93 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~ 93 (369)
..........+...|++++|++++++.....+... ......++..+..++...|++++|+..|++..... .. .
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~--~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 89 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGW--FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 89 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCC--cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence 33444556778899999999999999988652100 00013467778899999999999999999886521 11 1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHHcC----CC
Q 036461 94 NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ----GVQPN---VVSFNVIMNELCKNGKMDEASRLLELMIQIG----VR 162 (369)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~ 162 (369)
....+..+...+...|++..+...+.+.... +.... ...+..+...+...|+++.+...+....... ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 169 (366)
T d1hz4a_ 90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence 1344566777888899999999988876542 11111 1244556677888999999999888877642 22
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCc--hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC---
Q 036461 163 PNAFVYNTLMDGFCLTGRVNRAEELFVSMESM----GCKH--NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP--- 233 (369)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 233 (369)
.....+......+...++...+...+...... +..+ ....+......+...|+++.|...+..........
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 249 (366)
T d1hz4a_ 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 249 (366)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH
Confidence 33455666677788888888888887766432 1111 12345556667778888888888888776643222
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHHHH----cCCCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEMQR----HGVAAD-TWAYRTFIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
....+..+..++...|++++|...++.+.. .+..|+ ...+..+..+|...|++++|...+++...
T Consensus 250 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 250 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233455677788888888888888877653 222232 34566677788888888888888877654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.4e-11 Score=98.21 Aligned_cols=166 Identities=8% Similarity=-0.036 Sum_probs=104.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN-DWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
...++.+..++.+.+.+++|+++++++++.+ |-+...|+....++...| ++++|+..+++.++..+. +..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 3455666666667777777777777776653 335566666666666654 467777777777665422 5666666677
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC---
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKE--- 215 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 215 (369)
++.+.|++++|+..++.+.+.. +.+...|..+...+...|++++|++.++.+.+.+ +.+..+|+.+..++.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence 7777777777777777777664 3356667777777777777777777777776664 4455566555554444333
Q ss_pred ---hHHHHHHHHHHHhC
Q 036461 216 ---IEGALSLYSEMLSK 229 (369)
Q Consensus 216 ---~~~a~~~~~~~~~~ 229 (369)
.++|+..+.++++.
T Consensus 199 ~~~~~~ai~~~~~al~~ 215 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKL 215 (315)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHh
Confidence 34455555555444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=2.4e-11 Score=98.82 Aligned_cols=274 Identities=14% Similarity=0.012 Sum_probs=192.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C----Ch
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN----VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ-P----NV 130 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~ 130 (369)
..........+...|++++|++++++..+.....+ ...+..+..++...|++++|...|++....... + ..
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 44555567778899999999999999887522111 245677888999999999999999988653111 1 12
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHc----CCC--c-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCch
Q 036461 131 VSFNVIMNELCKNGKMDEASRLLELMIQI----GVR--P-NAFVYNTLMDGFCLTGRVNRAEELFVSMESMG----CKHN 199 (369)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~ 199 (369)
..+..+...+...|++..+...+...... +.. + ....+..+...+...|+++.+...+....... ....
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence 34556667788899999999998877642 111 1 23355667788889999999999988876542 1223
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHhC----CCCC--cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCC---cCH
Q 036461 200 VFSYSILINGYCKNKEIEGALSLYSEMLSK----GIKP--DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVA---ADT 270 (369)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~ 270 (369)
...+......+...++...+...+.+.... +..+ ....+..+...+...|+++.|...+....+.... ...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 251 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 251 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHH
Confidence 445666677788889999988888776652 1111 1234455666777889999999988877654322 223
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 271 WAYRTFIDGLCKNGYIVEAVELFRTLRIL----KYEL-DIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
..+..+..++...|++++|...++.+... +..| ...++..+...|...|++++|.+.+++..+
T Consensus 252 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 252 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566788888999999999999887632 2223 345677788889999999999999988775
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.52 E-value=1.1e-11 Score=98.68 Aligned_cols=217 Identities=10% Similarity=0.016 Sum_probs=106.5
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcC--------------ChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHH
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTG--------------HTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIID 68 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (369)
+..+|++.+.. ++.++..|...+..+.+.+ ..++|..+|++..+.. .+.+...|...+.
T Consensus 35 v~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~------~p~~~~l~~~ya~ 107 (308)
T d2onda1 35 VMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL------LKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT------TTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHc------CCCCHHHHHHHHH
Confidence 44566666654 2455666665555443222 2345555666655443 2334445555555
Q ss_pred HHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhCCChh
Q 036461 69 GLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNE-LCKNGKMD 147 (369)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 147 (369)
...+.|+++.|..+|+++...........|...+....+.|+++.|.++|+++.+.+.. +...|...+.. +...|+.+
T Consensus 108 ~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~ 186 (308)
T d2onda1 108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHH
T ss_pred HHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHH
Confidence 55566666666666666555322222334555555555666666666666665554321 22233222222 22235555
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCch--HHHHHHHHHHHhhcCChHHHHHHHH
Q 036461 148 EASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG-CKHN--VFSYSILINGYCKNKEIEGALSLYS 224 (369)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~ 224 (369)
.|..+|+.+.+.. +.+...+...++.+...|+++.|..+|++..... .+|. ...|...+..-...|+.+.+..+++
T Consensus 187 ~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555442 2344455555555555555555555555554432 1111 2244444444444555555555555
Q ss_pred HHHh
Q 036461 225 EMLS 228 (369)
Q Consensus 225 ~~~~ 228 (369)
++.+
T Consensus 266 r~~~ 269 (308)
T d2onda1 266 RRFT 269 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=2.1e-11 Score=97.10 Aligned_cols=220 Identities=11% Similarity=0.046 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--------------ChhHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 036461 111 WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG--------------KMDEASRLLELMIQIGVRPNAFVYNTLMDGFC 176 (369)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (369)
.+.+..+|++++.. .+.+...|...+..+...+ ..+++..+|++..+...+.+...+...+....
T Consensus 32 ~~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 32 TKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34456666666654 2334455554444433322 12445555555554333334444555555555
Q ss_pred hcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH-HHhcccHHHHH
Q 036461 177 LTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIG-LFEIHQVERAF 255 (369)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~ 255 (369)
..|+++.|..+|+++..........+|...+....+.|+.+.|.++|+++.+.++. +...|...+.. +...|+.+.|.
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence 55555555555555554431122334555555555555555555555555554322 22222222221 22234555555
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 256 KLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK-YEL--DIRAYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
.+|+.+.+. .+.+...+...+..+...|+++.|..+|++..... .+| ....|...+..-...|+.+.+..+++++.
T Consensus 190 ~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 190 KIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555543 22344455555555555555555555555554432 111 12344444544445555555555555554
Q ss_pred c
Q 036461 333 R 333 (369)
Q Consensus 333 ~ 333 (369)
+
T Consensus 269 ~ 269 (308)
T d2onda1 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=1e-12 Score=106.29 Aligned_cols=277 Identities=9% Similarity=-0.015 Sum_probs=190.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHH----------hcCChHHHHHHHHHhHhCCC
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLC----------KEGFVDKAKELFLKMKDENI 91 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~~~~~~~~~ 91 (369)
+..++......+..++|+++++++...+ |.+...|+..-..+. ..|++++|+..++.+.+..
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~-------P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~- 103 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN- 103 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-
Confidence 3444444444445589999999999876 344556654443332 2345788999999988763
Q ss_pred CCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHH
Q 036461 92 NPNVVTYNSLIHGFCYAN--DWNEAKCLFIEMMDQGVQPNVVSFN-VIMNELCKNGKMDEASRLLELMIQIGVRPNAFVY 168 (369)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (369)
|.+...|..+..++...+ ++++|...+.++..... ++...+. .....+...+.+++|+..++.+.+.+ +-+...|
T Consensus 104 pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~ 181 (334)
T d1dcea1 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 181 (334)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHH
T ss_pred CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHH
Confidence 447777877777776665 58899999999988643 3455544 44466777899999999999988876 4478888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 036461 169 NTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEI 248 (369)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (369)
..+..++...|++++|...+....... |.. ......+...+..+++...+........ ++...+..+...+...
T Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~ 255 (334)
T d1dcea1 182 HYRSCLLPQLHPQPDSGPQGRLPENVL--LKE---LELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVL 255 (334)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHH--HHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhH--HHH---HHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHH
Confidence 889999999999888876665554431 111 1223334555667777887777777643 3444556666777778
Q ss_pred ccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036461 249 HQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLC 316 (369)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (369)
++.++|...+......+ +.+...+..++.++...|++++|...++++.+.. |.+...|..+...+.
T Consensus 256 ~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 256 QSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHHHHHHHHh
Confidence 88888888888777653 2355677778888888899999999999888774 334556666655544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=7.4e-13 Score=107.07 Aligned_cols=263 Identities=9% Similarity=-0.021 Sum_probs=195.1
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----------cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCR----------TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGL 70 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 70 (369)
++|++++++.++.. |-+..+|+..-..+.. .|++++|+..++.+.+.+ |.+...|..+..++
T Consensus 46 ~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-------pk~~~~~~~~~~~~ 117 (334)
T d1dcea1 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------PKSYGTWHHRCWLL 117 (334)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-------CCcHHHHHHhhHHH
Confidence 37899999999875 5556677655444333 345789999999999876 56778888888877
Q ss_pred HhcC--ChHHHHHHHHHhHhCCCCCCHHhHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChh
Q 036461 71 CKEG--FVDKAKELFLKMKDENINPNVVTYN-SLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMD 147 (369)
Q Consensus 71 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (369)
...+ ++++|+..+.++.... +++...+. .....+...+.+++|+..+++++...+ -+...|..+..++...|+++
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHH
Confidence 7765 5899999999998763 34566654 455777788999999999999988754 37888999999999999998
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 036461 148 EASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (369)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (369)
+|...+....+. .|+. ......+...+..+++...+....... +++...+..+...+...++.++|...+.+..
T Consensus 196 ~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 196 DSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp CSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 887666555443 1111 223344566778888888888887664 4555566667777888899999999999988
Q ss_pred hCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 036461 228 SKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLC 281 (369)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 281 (369)
..++. +..++..+..++...|++++|...++.+.+.+ |.+...|..+...+.
T Consensus 270 ~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 270 PENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKFL 321 (334)
T ss_dssp TTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHH
T ss_pred hhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHHHHHHHHh
Confidence 76432 56678888999999999999999999999864 224455565555444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=9e-12 Score=96.69 Aligned_cols=96 Identities=13% Similarity=-0.045 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
+|..+..++.+.|++++|+..|++..+.+ |.++.+|..+..++.+.|++++|+..|+++.+.. |.+..++..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~ 110 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLN 110 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-------CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHH
Confidence 44555555566666666666666665544 3345555566666666666666666666655532 223445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
+..++...|++++|...|++..+.
T Consensus 111 lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 111 RGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhh
Confidence 555555666666666666555554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1.9e-11 Score=94.81 Aligned_cols=150 Identities=11% Similarity=-0.007 Sum_probs=90.1
Q ss_pred hHHHHHHHHHhHhCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHH
Q 036461 76 VDKAKELFLKMKDENINP---NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRL 152 (369)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (369)
.+.++.-++++....... ...+|..+..+|.+.|++++|+..|++.++.. +-+..+|..+..++...|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 344445555555431111 23456666777777777777777777777653 23566677777777777777777777
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 153 LELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
|+++.+.. +.+..++..+..++...|++++|...++...+.. +.+......+...+.+.+..+.+..+......
T Consensus 94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 94 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 77777764 2345566667777777777777777777776654 33333333333444444444444444444444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.07 E-value=1.7e-08 Score=79.07 Aligned_cols=59 Identities=10% Similarity=-0.017 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMIQI----GVRP-NAFVYNTLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
|......|...+++++|...|.++.+. +.++ -..+|..+..+|.+.|++++|.+.+++.
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a 103 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence 444444555555555555555554432 1111 1234444555555555555555555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.03 E-value=1.2e-06 Score=67.30 Aligned_cols=96 Identities=15% Similarity=0.023 Sum_probs=52.3
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh----cCChHHHHHHHHHhHhCCCCC
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENINP 93 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 93 (369)
||..+..|...+.+.+++.+|++.|++..+.+ +...+..|...|.. ..+...|...+......+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---
Confidence 45556666666666667777777777666543 34455555555554 446666666666665543
Q ss_pred CHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 036461 94 NVVTYNSLIHGFCY----ANDWNEAKCLFIEMMDQG 125 (369)
Q Consensus 94 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 125 (369)
+......+...+.. ..+.+.|...++.....|
T Consensus 69 ~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 69 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccchhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence 23333333333322 335555666666555543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.03 E-value=4.5e-08 Score=76.64 Aligned_cols=134 Identities=14% Similarity=0.021 Sum_probs=74.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC-----Ccc
Q 036461 95 VVTYNSLIHGFCYANDWNEAKCLFIEMMDQ----GVQP-NVVSFNVIMNELCKNGKMDEASRLLELMIQIGV-----RPN 164 (369)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~ 164 (369)
...|......|...+++++|...|.+..+. +.++ ...+|..+..+|.+.|++++|...++...+... ...
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence 345777778888888888888888877552 1111 234677778888888888888888876654310 011
Q ss_pred HHHHHHHHHHHHh-cCChHHHHHHHHHHHhc----CCCc-hHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 165 AFVYNTLMDGFCL-TGRVNRAEELFVSMESM----GCKH-NVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 165 ~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
..++..+...|.. .|++++|++.+.+.... +.++ ...++..+...+...|++++|...|+++..
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 2334444444433 46666666666555321 1000 112234444444444555555554444444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=2.3e-08 Score=72.83 Aligned_cols=92 Identities=14% Similarity=0.024 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.|+. ...+...|+++.|++.|+++. +|++.+|..+..++...|++++|++.|++.++.+ +.+...|..
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~----------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~ 75 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQ----------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQ 75 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSS----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC----------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHH
Confidence 3443 556677888888888887532 4667778888888888888888888888888764 346778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
+..++.+.|++++|+..|++.+..
T Consensus 76 ~g~~~~~~g~~~~A~~~~~kAl~~ 99 (192)
T d1hh8a_ 76 RGMLYYQTEKYDLAIKDLKEALIQ 99 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccHHHHHHHHHHHHHh
Confidence 888888888888888888887653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.97 E-value=2.5e-06 Score=65.49 Aligned_cols=224 Identities=13% Similarity=0.031 Sum_probs=128.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDWNEAKCLFIEMMDQGVQPNVVSFN 134 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (369)
|+..+..|...+...+++++|++.|++..+.| +...+..|...|.. ..++..|..++......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45667777777778888888888888887765 55666666666665 557778888887777654 333333
Q ss_pred HHHHHHHh----CCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCchHHHHHHH
Q 036461 135 VIMNELCK----NGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAEELFVSMESMGCKHNVFSYSIL 206 (369)
Q Consensus 135 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (369)
.+...+.. ..+.+.|...++...+.|.. .....+...+.. ......+...+......+ +...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 44333332 34667777777777766532 222222222222 334555666666555432 34445555
Q ss_pred HHHHhh----cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cccHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 036461 207 INGYCK----NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWAYRTFID 278 (369)
Q Consensus 207 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 278 (369)
...+.. ..+...+...++...+.| +......+...+.. ..+++.|..+|....+.| ++..+..+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 555543 345556666666666543 34444444444443 345666666666666654 3444455555
Q ss_pred HHHh----CCCHHHHHHHHHHHHHcC
Q 036461 279 GLCK----NGYIVEAVELFRTLRILK 300 (369)
Q Consensus 279 ~~~~----~g~~~~a~~~~~~~~~~~ 300 (369)
.|.+ ..+.++|...|++....|
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 5543 235666666666666554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=2.5e-08 Score=66.11 Aligned_cols=93 Identities=23% Similarity=0.143 Sum_probs=73.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIH 103 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (369)
.-...+.+.|++++|+..|+++.+.+ |.++..|..+..++...|++++|+..++...+.+ +.+...|..+..
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~ 79 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD-------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 79 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-------CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHH
Confidence 34566778888888888888888776 5667778888888888888888888888887763 447777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 036461 104 GFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~ 124 (369)
++...|++++|+..|++.++.
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 80 ALEFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=5.1e-08 Score=71.00 Aligned_cols=136 Identities=13% Similarity=0.035 Sum_probs=64.1
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (369)
.+...|+++.|++.|..+ .+|++.++..+..++...|++++|++.|++..+.+ +.+...|..+..++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 334445555555544432 12344444445555555555555555555554443 3344444445555555555555
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036461 219 ALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA-DTWAYRTFIDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (369)
|+..|++.+..........|.. .| ....+ ...++..+..++.+.|++++|.+.++...
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~-------~~--------------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKI-------LG--------------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGG-------GT--------------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCchHHHHH-------hh--------------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555544443211000000000 00 00001 12345566677778888888888888777
Q ss_pred HcC
Q 036461 298 ILK 300 (369)
Q Consensus 298 ~~~ 300 (369)
...
T Consensus 148 ~~~ 150 (192)
T d1hh8a_ 148 SMK 150 (192)
T ss_dssp TTC
T ss_pred hcC
Confidence 654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.92 E-value=1.5e-08 Score=74.74 Aligned_cols=100 Identities=12% Similarity=-0.090 Sum_probs=86.8
Q ss_pred CcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036461 233 PDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLI 312 (369)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 312 (369)
|+...+......+.+.|++++|+..|..+++.. +.++..|..++.+|.+.|++++|+..|+++++.. |-+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 667777888899999999999999999988875 4578889999999999999999999999998765 55788899999
Q ss_pred HHHHcCCCHHHHHHHHHhcccC
Q 036461 313 DGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 313 ~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.+|...|++++|+..|+++...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988763
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=4.9e-08 Score=64.69 Aligned_cols=91 Identities=14% Similarity=0.024 Sum_probs=58.6
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 036461 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRL 321 (369)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 321 (369)
...+...|++++|+..|..+++.. +.+...|..+..++...|++++|+..++.+.+.+ +.+...|..++.++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 444556666666666666666653 3455666666666666666666666666666655 55666666666666666666
Q ss_pred HHHHHHHHhcccC
Q 036461 322 KIAWELFRSLPRG 334 (369)
Q Consensus 322 ~~a~~~~~~~~~~ 334 (369)
++|+..|++..+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=6.2e-08 Score=68.26 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=42.7
Q ss_pred HHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 036461 244 GLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKI 323 (369)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 323 (369)
.|.+.|++++|...|.++++.+ +.+...|..+..+|...|++++|...|+++++.. +.+..+|..++.++...|++++
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHH
Confidence 3444455555555555544442 2244444445555555555555555555554443 3344445555555555555555
Q ss_pred HHHHHHhccc
Q 036461 324 AWELFRSLPR 333 (369)
Q Consensus 324 a~~~~~~~~~ 333 (369)
|...+++...
T Consensus 97 A~~~~~~a~~ 106 (159)
T d1a17a_ 97 ALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.87 E-value=2.7e-08 Score=73.32 Aligned_cols=99 Identities=14% Similarity=-0.029 Sum_probs=74.4
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
|+...+......+.+.|++++|+..|+++...+ |.++.+|..+..+|.+.|++++|+..|+++.+.. |-+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~ 73 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVK 73 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHH
Confidence 566667777777888888888888888877765 5567777788888888888888888888877642 33566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (369)
+|..+..+|...|++++|+..|++...
T Consensus 74 a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 74 AHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777888888888888888777665
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=7.3e-08 Score=67.89 Aligned_cols=94 Identities=10% Similarity=0.026 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHH
Q 036461 23 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLI 102 (369)
Q Consensus 23 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (369)
......+.+.|++++|+..|+++.+.+ |.+...|..+..++...|++++|++.|+++++.. +.+..+|..++
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g 85 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRA 85 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc-------hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHH
Confidence 344556667777777777777777765 4556677777777777777777777777776653 33556777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 036461 103 HGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
.++...|++++|...+++....
T Consensus 86 ~~~~~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 86 ASNMALGKFRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777777777777777665
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.80 E-value=3.1e-08 Score=65.10 Aligned_cols=90 Identities=10% Similarity=-0.066 Sum_probs=59.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcC
Q 036461 275 TFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADG 354 (369)
Q Consensus 275 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 354 (369)
..+..+.+.|++++|...++++.... |.+..+|..++.++.+.|++++|+..|+++++.. +.+...|..+..+|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 34555666777777777777776654 4456667777777777777777777777766642 224666667777777777
Q ss_pred chHHHHHHHHHh
Q 036461 355 KMDKARDLFLDM 366 (369)
Q Consensus 355 ~~~~A~~~~~~m 366 (369)
++++|++.|++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 777777777664
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.79 E-value=2.6e-08 Score=65.46 Aligned_cols=92 Identities=8% Similarity=-0.044 Sum_probs=62.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHH
Q 036461 23 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLI 102 (369)
Q Consensus 23 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (369)
......+.+.|++++|+..|+++...+ |.++.+|..+..++.+.|++++|+..|++..+.. |.+...|..+.
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la 91 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 91 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc-------cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHH
Confidence 345556667777777777777777655 3456777777777777777777777777776652 33566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 036461 103 HGFCYANDWNEAKCLFIEMM 122 (369)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~ 122 (369)
.+|...|++++|++.+++.+
T Consensus 92 ~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 92 VSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHh
Confidence 77777777777777776653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=2.8e-08 Score=66.08 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=78.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 036461 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY---IVEAVELFRTLRILKYELD-IRAYNCLIDG 314 (369)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 314 (369)
..++..+...+++++|.+.|+.....+ +.++.++..+..++.+.++ +++|+.+++++...+..|+ ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 467778888999999999999998875 4578888888988887554 4568999999887643333 3477888999
Q ss_pred HHcCCCHHHHHHHHHhcccCCcccCHH
Q 036461 315 LCKSGRLKIAWELFRSLPRGVLIADVV 341 (369)
Q Consensus 315 ~~~~g~~~~a~~~~~~~~~~~~~~~~~ 341 (369)
|.+.|++++|.+.|+++++. .|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 99999999999999999885 45433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.6e-07 Score=62.35 Aligned_cols=95 Identities=11% Similarity=0.068 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC---hHHHHHHHHHhHhCCCCCC-HHhH
Q 036461 23 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF---VDKAKELFLKMKDENINPN-VVTY 98 (369)
Q Consensus 23 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~ 98 (369)
..++..+...+++++|.+.|++....+ |.++.++..+..++.+.++ +++|+.+|+++...+..|+ ..++
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-------p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~ 75 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYV 75 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHH
Confidence 456777778888888888888888876 5677888888888876554 4468888888776533222 2366
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..+..+|.+.|++++|.+.|+++++.
T Consensus 76 ~~Lg~~y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 76 FYLAVGNYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77788888888888888888888875
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.2e-06 Score=62.16 Aligned_cols=126 Identities=10% Similarity=-0.059 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 036461 202 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLC 281 (369)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 281 (369)
.+......+.+.|++++|+..|.+.+.......... +.-......+ ...++..+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~--------------~~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--------------NEEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC--------------SHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc--------------hHHHhhhchh-------HHHHHHHHHHHHH
Confidence 344556677778888888888877776411100000 0000000000 0124455666777
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHH
Q 036461 282 KNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHAL 350 (369)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 350 (369)
+.|++++|+..++.++... |.++.++..++.+|...|++++|...|+++.+..+ -+..+...+..+.
T Consensus 74 k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQ 140 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 7777777777777777665 55677777777777777777777777777766421 1444444444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=9.8e-08 Score=80.63 Aligned_cols=226 Identities=9% Similarity=-0.041 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc-hhhHHHHHHHHHhcCChHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 80 (369)
+|.+.|++..+.. +....++..+..++...|++++| |+++...+ |+ ....+...... ...+..+.
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--------p~~a~~~~~e~~Lw--~~~y~~~i 69 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--------LEYALDKKVEQDLW--NHAFKNQI 69 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--------HHHHHHHTHHHHHH--HHHTHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--------hhhHHHHhHHHHHH--HHHHHHHH
Confidence 6888888888752 33345777777888888888766 67776544 32 12222111111 11244566
Q ss_pred HHHHHhHhCCCCCCHHhHHHH--HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 036461 81 ELFLKMKDENINPNVVTYNSL--IHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQ 158 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (369)
+.++...+....++..-.... .......+.++.++..+....... +++...+..+...+.+.|+.+.|...+.....
T Consensus 70 e~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 148 (497)
T d1ya0a1 70 TTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS 148 (497)
T ss_dssp HHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHH
T ss_pred HHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 666666554322332222111 112223344555555544443332 23445566667777777888887777766654
Q ss_pred cCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhH
Q 036461 159 IGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIY 238 (369)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (369)
.. ...++..++..+...|++++|...|.+..... |.+...|+.+...+...|+..+|...|.+.+... +|-..++
T Consensus 149 ~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~ 223 (497)
T d1ya0a1 149 YI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAAS 223 (497)
T ss_dssp HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHH
T ss_pred CC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHH
Confidence 32 23456677788888888888888888887775 5666788888888888888888888888887764 3455566
Q ss_pred HHHHHHHHh
Q 036461 239 NTLFIGLFE 247 (369)
Q Consensus 239 ~~l~~~~~~ 247 (369)
..|...+.+
T Consensus 224 ~nL~~~~~~ 232 (497)
T d1ya0a1 224 TNLQKALSK 232 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=4.1e-06 Score=59.25 Aligned_cols=59 Identities=8% Similarity=-0.044 Sum_probs=25.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036461 135 VIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM 194 (369)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (369)
.+..+|.+.|++++|+..++..++.. |.++.++..+..++...|++++|...|+.+.+.
T Consensus 67 nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 67 NLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33444444444444444444444432 223444444444444444444444444444433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.50 E-value=0.00012 Score=57.24 Aligned_cols=274 Identities=11% Similarity=0.080 Sum_probs=148.2
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
.||..--..+...|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+.. +.
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------------d~~rl~~~~v~l~~~~~avd~~~k~~------~~ 69 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------NFGRLASTLVHLGEYQAAVDGARKAN------ST 69 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------------CHHHHHHHHHTTTCHHHHHHHHHHHT------CH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------------CHHHHHHHHHhhccHHHHHHHHHHcC------CH
Confidence 3566666778888889999999999998643 37778888889999999988876542 66
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF 175 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (369)
.+|..+...+.+......+ .+.......+......++..|-..|.+++...+++...... ..+...++.++..|
T Consensus 70 ~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~ly 143 (336)
T d1b89a_ 70 RTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 143 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHH
Confidence 7888888888887766543 22233334455666778889999999999999999876542 45677788888888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchH--------HHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNV--------FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE 247 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (369)
++.+ .++..+.+...... ..+.. ..|..++..|.+.|+++.|..+.- .. .++..-...++..+.+
T Consensus 144 ak~~-~~kl~e~l~~~s~~-y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~~~f~e~~~k 216 (336)
T d1b89a_ 144 SKFK-PQKMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEGQFKDIITK 216 (336)
T ss_dssp HTTC-HHHHHHHHHHHSTT-SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCHHHHHHHHHH
T ss_pred HHhC-hHHHHHHHHhcccc-CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhHHHHHHHHHc
Confidence 8764 34444444433211 11111 013344445555555555544321 11 1222223334444555
Q ss_pred cccHHHHHHHHHHHHHcCCCcCHHHHHHH-------------HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036461 248 IHQVERAFKLFDEMQRHGVAADTWAYRTF-------------IDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDG 314 (369)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (369)
..+++...++.....+. .| ...+.+ +..+.+.+++.....+++.....+ +..+.+++...
T Consensus 217 ~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~l 289 (336)
T d1b89a_ 217 VANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNL 289 (336)
T ss_dssp CSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHH
Confidence 55555554444444432 12 122333 333334444444444444443322 34566666677
Q ss_pred HHcCCCHHHHHHHHHh
Q 036461 315 LCKSGRLKIAWELFRS 330 (369)
Q Consensus 315 ~~~~g~~~~a~~~~~~ 330 (369)
|...++++.-.+..+.
T Consensus 290 yie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 290 FITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HhCcchhHHHHHHHHH
Confidence 7777666554444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=1.6e-06 Score=58.22 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCC-CC-----
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENIN-PN----- 94 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----- 94 (369)
.+..+...+.+.|++++|+..|++.++.+ |.+..++..+..+|.+.|++++|++.++++++.... +.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~ 78 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHH
Confidence 34556667777788888888888877765 456777777788888888888888887776552100 01
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 95 VVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..+|..+...+...+++++|+..|++....
T Consensus 79 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 134555666666777777777777766553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=2.8e-07 Score=77.77 Aligned_cols=226 Identities=10% Similarity=-0.071 Sum_probs=127.7
Q ss_pred HHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH-HhHHHHHHHHHhcCCHHHHH
Q 036461 37 VALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV-VTYNSLIHGFCYANDWNEAK 115 (369)
Q Consensus 37 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 115 (369)
+|.+.|+++.+.. +.....+..+..++...+++++| |++++.. .|+- ..++...... ...+..+.
T Consensus 4 eA~q~~~qA~~l~-------p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw--~~~y~~~i 69 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-------ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW--NHAFKNQI 69 (497)
T ss_dssp HHHHHHHHHHHHH-------GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH--HHHTHHHH
T ss_pred HHHHHHHHHHHcC-------CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH--HHHHHHHH
Confidence 6888899988754 23366777788888888888766 6776653 2221 1111111111 12245567
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHH--HhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036461 116 CLFIEMMDQGVQPNVVSFNVIMNEL--CKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMES 193 (369)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (369)
..++...+....++..-....+..+ ...+.++.++..+....+.. +++...+..+...+.+.|+.+.|...+.....
T Consensus 70 e~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 148 (497)
T d1ya0a1 70 TTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS 148 (497)
T ss_dssp HHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHH
T ss_pred HHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 7777766554334433222222222 22344455555544444332 33566677788888999999999988877765
Q ss_pred cCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHH
Q 036461 194 MGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAY 273 (369)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (369)
.. ...++..+...+...|++++|...|.+..+..+. +...|+.|...+...|+..+|...|.+.+... +|.+.++
T Consensus 149 ~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~ 223 (497)
T d1ya0a1 149 YI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAAS 223 (497)
T ss_dssp HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHH
T ss_pred CC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHH
Confidence 32 2356777889999999999999999999997543 66899999999999999999999999988764 4677777
Q ss_pred HHHHHHHHh
Q 036461 274 RTFIDGLCK 282 (369)
Q Consensus 274 ~~l~~~~~~ 282 (369)
..+...+.+
T Consensus 224 ~nL~~~~~~ 232 (497)
T d1ya0a1 224 TNLQKALSK 232 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.42 E-value=3.2e-06 Score=59.76 Aligned_cols=93 Identities=11% Similarity=-0.021 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHH
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALC 351 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 351 (369)
.+..+..+|.+.|++++|+..++.++... |.+..+|..++.++...|++++|...|+++.... +.+..+...+..+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45556677777888888888888877765 6677777778888888888888888888877653 224455555544444
Q ss_pred hcCchH-HHHHHHHHh
Q 036461 352 ADGKMD-KARDLFLDM 366 (369)
Q Consensus 352 ~~g~~~-~A~~~~~~m 366 (369)
..+... ...+.+.+|
T Consensus 144 ~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 144 KAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 433332 234444444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=3.5e-06 Score=56.46 Aligned_cols=58 Identities=9% Similarity=0.067 Sum_probs=29.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 170 TLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
.+...+.+.|++++|+..|++..+.+ +.+..++..+..+|.+.|++++|+..+.++++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 34444555555555555555555443 33444455555555555555555555555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.37 E-value=1.2e-05 Score=55.74 Aligned_cols=62 Identities=16% Similarity=0.060 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM 194 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (369)
+|..+..+|.+.|++++|+..++.+++.+ |.+..+|..++.++...|++++|...|++..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34445555555555555555555555543 334455555555555555555555555555544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.35 E-value=9.1e-06 Score=56.29 Aligned_cols=109 Identities=18% Similarity=0.101 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHhCCCC----CcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 036461 201 FSYSILINGYCKNKEIEGALSLYSEMLSKGIK----PDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTF 276 (369)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 276 (369)
..+..-...+.+.|++.+|+..|.+++..-.. ++.... . ... .....++..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~-----------------~---~~~----~~~~~~~~Nl 73 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL-----------------D---KKK----NIEISCNLNL 73 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH-----------------H---HHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH-----------------H---hhh----hHHHHHHhhH
Confidence 34555667777888888888888887764111 010000 0 000 0112356667
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 277 IDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
..+|.+.|++++|+..++.++..+ |.+..+|..++.++...|++++|...|++..+.
T Consensus 74 a~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 74 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778888888888888888888776 667788888888888888888888888888775
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.35 E-value=5.3e-06 Score=58.68 Aligned_cols=86 Identities=8% Similarity=-0.140 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHH
Q 036461 270 TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHA 349 (369)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (369)
...+..+..++.+.|++++|+..++++++.. +.+..+|..++.++...|++++|+..|+++++.. +.+..+...+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4456677788888999999999999988776 6678888889999999999999999998888753 2255556555555
Q ss_pred HHhcCchH
Q 036461 350 LCADGKMD 357 (369)
Q Consensus 350 ~~~~g~~~ 357 (369)
..+.....
T Consensus 155 ~~~l~~~~ 162 (169)
T d1ihga1 155 KQKIKAQK 162 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44433333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.34 E-value=1.8e-06 Score=65.63 Aligned_cols=120 Identities=15% Similarity=0.053 Sum_probs=64.3
Q ss_pred HhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 036461 246 FEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAW 325 (369)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 325 (369)
.+.|++++|+..+++.++.. +.+...+..++..++..|++++|...++...+.. +.+...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHH
Confidence 34566677777776666653 3456666667777777777777777777666653 233444444444444333333333
Q ss_pred HHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 326 ELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
.........+.+++...+......+...|++++|.+.++++.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~ 126 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 222222211112223333344455666677777777766654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.33 E-value=1.5e-05 Score=56.30 Aligned_cols=64 Identities=11% Similarity=-0.062 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 165 AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
...+..+..++.+.|++++|+..++++.+.. +.+..+|..+..++...|++++|+..|++..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445555566666666666666666666554 445556666666666666666666666666664
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.28 E-value=3.3e-05 Score=54.33 Aligned_cols=63 Identities=13% Similarity=0.001 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 036461 167 VYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (369)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (369)
+|..+..+|.+.|++++|+..++.+.... +.+..+|..+..++...|++++|...|.+++...
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44556666677777777777777776654 5566666667777777777777777777776653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.25 E-value=0.00052 Score=53.55 Aligned_cols=272 Identities=13% Similarity=0.116 Sum_probs=164.3
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 036461 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI 136 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (369)
.||..-...++..|.+.|.++.|..+|..+.+ |..++..+.+.+++..|...+.+.- +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 45666677788889999999999999986654 5667888889999999998887542 56788888
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCh
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (369)
...+.+......+. +.......++.....++..|...|.++....+++...... ..+...++.++..|++.+ .
T Consensus 76 ~~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 76 CFACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-h
Confidence 98888877665432 2223334456666778999999999999999999886543 567778888999888864 4
Q ss_pred HHHHHHHHHHHhCCCCCc--------HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHH
Q 036461 217 EGALSLYSEMLSKGIKPD--------VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE 288 (369)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 288 (369)
++..+.+..... ...+. ...|..++..|.+.|+++.|..++ .++ +++.+-....+..+.+.++.+.
T Consensus 149 ~kl~e~l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~ 222 (336)
T d1b89a_ 149 QKMREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVEL 222 (336)
T ss_dssp HHHHHHHHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHH
Confidence 454444443321 11111 112344555555666666555443 222 2333344555666777777776
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH-------------HHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCc
Q 036461 289 AVELFRTLRILKYELDIRAYNCLI-------------DGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGK 355 (369)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~-------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 355 (369)
..++.....+. .| ...+.++ ..+.+.++..-....++.....+ +..+.+++...|...++
T Consensus 223 ~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d 295 (336)
T d1b89a_ 223 YYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEED 295 (336)
T ss_dssp HHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcch
Confidence 66666655543 22 2333333 44445555555555555555543 45688999999999999
Q ss_pred hHHHHHHH
Q 036461 356 MDKARDLF 363 (369)
Q Consensus 356 ~~~A~~~~ 363 (369)
++.-.+..
T Consensus 296 ~~~l~~~i 303 (336)
T d1b89a_ 296 YQALRTSI 303 (336)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 76654443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.25 E-value=5.1e-05 Score=53.78 Aligned_cols=127 Identities=6% Similarity=-0.048 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHH
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL 101 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (369)
...........|++++|.+.|.+........ +-++. ...+-+...-..+... ....+..+
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~---~l~~~-------------~~~~w~~~~r~~l~~~----~~~a~~~l 73 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGP---VLDDL-------------RDFQFVEPFATALVED----KVLAHTAK 73 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS---TTGGG-------------TTSTTHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCccc---ccccC-------------cchHHHHHHHHHHHHH----HHHHHHHH
Confidence 3444567889999999999999999864210 00110 0011111111122211 34556667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH-----cCCCccHHHHH
Q 036461 102 IHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQ-----IGVRPNAFVYN 169 (369)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 169 (369)
...+...|++++|+..+++++... +-+...|..++.++...|+..+|++.|+++.+ .|+.|+..+-.
T Consensus 74 a~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 74 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 777778888888888888877764 34677777888888888888888888777643 47777765533
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.16 E-value=7.9e-06 Score=55.94 Aligned_cols=116 Identities=13% Similarity=0.017 Sum_probs=76.9
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhc----------CChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKE----------GFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
+-+.+.+++|+..|+...+.+ |.++.++..+..++... +.+++|+..|+++.+.+ |.+..+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-------P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~ 78 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAV 78 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-------CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHH
Confidence 456677999999999999987 67788999998888754 44577888888887753 3467788
Q ss_pred HHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 99 NSLIHGFCYAND-----------WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 99 ~~l~~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
..+..+|...|+ +++|.+.|++.++. .|+...+...+..+ ..+.+++.++.+.|
T Consensus 79 ~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 79 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred hhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 888877766543 45666666666654 34444444333322 34445555554443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.16 E-value=1.5e-06 Score=66.09 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=63.2
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYA 108 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (369)
..+.|++++|+..+++..+.. |.|...+..++..++..|++++|.+.|+...+.. +-+...+..+...+...
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-------P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~ 77 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-------PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAA 77 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 445677777777777777765 5566777777777777777777777777776642 11333443333333322
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 109 NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
+..+++..-.......+.+++...+......+...|+.++|...++.+.+.
T Consensus 78 ~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 78 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 222222111111000111112222333344455556666666666555543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.15 E-value=8.6e-06 Score=55.77 Aligned_cols=109 Identities=17% Similarity=0.036 Sum_probs=83.5
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhc----------CChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRT----------GHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGL 70 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 70 (369)
++|++.|+...+.. |.++.++..+..++... +.+++|+..|+++.+.+ |.+..+|..+..+|
T Consensus 14 e~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-------P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 14 EQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-------chhhHHHhhHHHHH
Confidence 47999999999986 78888999999888754 44578999999999977 56788999999998
Q ss_pred HhcC-----------ChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036461 71 CKEG-----------FVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQG 125 (369)
Q Consensus 71 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (369)
...| .+++|.+.|++..+. .|+...|...+..+ .+|.+++.++.+.|
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 7754 368899999998874 56666555444433 35667777766655
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.14 E-value=5.6e-05 Score=53.54 Aligned_cols=126 Identities=11% Similarity=-0.011 Sum_probs=83.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC
Q 036461 204 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (369)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (369)
..........|++++|...|.+.+.... .... ......+.+...-..+.. .....+..++.++...
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~r--G~~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWR--GPVL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCC--SSTT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCc--cccc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHC
Confidence 3344567789999999999999987511 1100 000000011111111111 1234567788888889
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc-----CCcccCHHHHH
Q 036461 284 GYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR-----GVLIADVVTYN 344 (369)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 344 (369)
|++++|+..++++.... +.+...|..++.+|...|+.++|++.|+++.+ .|+.|+..+-.
T Consensus 81 g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 81 GRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred CCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 99999999999988876 66888899999999999999999998888743 57888876543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=5.3e-05 Score=47.32 Aligned_cols=83 Identities=12% Similarity=-0.031 Sum_probs=61.4
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
+...+..+...+.+.|++.+|+..|++..+..+......+....++..+..++.+.|++++|+..++++.+.. |-+..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence 5566778899999999999999999998865421111011225678899999999999999999999998863 334555
Q ss_pred HHHH
Q 036461 98 YNSL 101 (369)
Q Consensus 98 ~~~l 101 (369)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.81 E-value=9e-05 Score=51.29 Aligned_cols=98 Identities=14% Similarity=0.010 Sum_probs=61.3
Q ss_pred HhHHHH--HHHHHhcccHHHHHHHHHHHHHcCCC-cC----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---
Q 036461 236 VIYNTL--FIGLFEIHQVERAFKLFDEMQRHGVA-AD----------TWAYRTFIDGLCKNGYIVEAVELFRTLRIL--- 299 (369)
Q Consensus 236 ~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 299 (369)
.+|..+ ...+...|++++|+..|.+.++.... |+ ...|..+..+|...|++++|...+++....
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 345545 44455667888888888877653111 11 245667777777888888888777776642
Q ss_pred --CCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 300 --KYELD-----IRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 300 --~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
...++ ..++..+..+|...|++++|+..|++..+
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 22455667777777777777777777765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.80 E-value=0.00028 Score=48.65 Aligned_cols=105 Identities=13% Similarity=-0.032 Sum_probs=69.6
Q ss_pred HhHHHHH--HHHHHhcCChhHHHHHHHHHHcCCCCCCcccc-----cchhhHHHHHHHHHhcCChHHHHHHHHHhHhC--
Q 036461 19 VFTYNTL--INGLCRTGHTIVALNLFEEMANGNGEFGVVCK-----PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-- 89 (369)
Q Consensus 19 ~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 89 (369)
..+|..+ ...+.+.|++++|+..|++.....+....... .....|+.+..+|...|++++|...+++....
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 3456666 55677889999999999999875422100000 01356778888888889888888888887542
Q ss_pred ---CCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036461 90 ---NINPN-----VVTYNSLIHGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 90 ---~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (369)
...++ ...++.+..+|...|++++|+..|++..+
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 22456667777777888888777777654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00089 Score=41.46 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036461 168 YNTLMDGFCLTGRVNRAEELFVSMESM 194 (369)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (369)
+..+..++.+.|++++|+..++++.+.
T Consensus 49 l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 49 LDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 333444444444444444444444433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.48 E-value=0.0035 Score=41.51 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=8.0
Q ss_pred ChhHHHHHHHHHHcCC
Q 036461 34 HTIVALNLFEEMANGN 49 (369)
Q Consensus 34 ~~~~A~~~~~~~~~~~ 49 (369)
++++|+.+|++..+.+
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 3445555555554433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.39 E-value=0.0037 Score=41.37 Aligned_cols=107 Identities=13% Similarity=0.021 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh----cCChH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK----EGFVD 77 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 77 (369)
+|++.|++..+.| ++..+..+.. ....+.++|+.++++..+.+ ++.....|...|.. ..+.+
T Consensus 11 ~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---------~~~a~~~Lg~~y~~g~~~~~d~~ 76 (133)
T d1klxa_ 11 KAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---------SGNGCRFLGDFYENGKYVKKDLR 76 (133)
T ss_dssp HHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred HHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---------chhhhhhHHHhhhhccccchhhH
Confidence 6888888888776 3334444432 23456777777777777654 34455555555543 34667
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 036461 78 KAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDWNEAKCLFIEMMDQG 125 (369)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 125 (369)
+|+++|++..+.| ++.....|...|.. ..+..+|..+|++..+.|
T Consensus 77 ~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 77 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 7777777776654 44444555555544 346666777777666655
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.18 E-value=0.025 Score=36.18 Aligned_cols=68 Identities=18% Similarity=0.069 Sum_probs=49.3
Q ss_pred CCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 266 VAADTWAYRTFIDGLCKNG---YIVEAVELFRTLRILKYELD-IRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
..++..+--....++.++. +.++++.+++.+...+ +.+ ...+-.|..+|.+.|++++|.+.++.+++.
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3456666666777777654 4668888888887654 333 356677788888899999999998888874
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.51 E-value=0.14 Score=32.43 Aligned_cols=64 Identities=16% Similarity=0.036 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 036461 271 WAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGV 335 (369)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 335 (369)
..+...+..+..+|.-+.-.++++.+.+.+ .+++...-.+..+|.+.|...++-+++.++-+.|
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 344444455555555555555555544433 4555555555555555555555555555555444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.56 Score=37.87 Aligned_cols=116 Identities=9% Similarity=-0.003 Sum_probs=69.2
Q ss_pred cccHHHHHHHHHHHHHcCCCcCHHHHHHH----HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 036461 248 IHQVERAFKLFDEMQRHGVAADTWAYRTF----IDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKI 323 (369)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 323 (369)
..+.+.+..++....... ..+..-.... .......+..+.+...+....... .+.......+......+++..
T Consensus 227 ~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 227 RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHH
T ss_pred ccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHH
Confidence 356777777777766542 2222222222 222334556677777666665442 344444455555666778888
Q ss_pred HHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 324 AWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 324 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
+...+..+.... .-...-..-+.+++...|+.++|..+|....
T Consensus 304 ~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 304 LNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 888888776542 2234444556778888888888888887654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.21 E-value=0.19 Score=31.97 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=40.2
Q ss_pred CcHHhHHHHHHHHHhc---ccHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 233 PDVVIYNTLFIGLFEI---HQVERAFKLFDEMQRHGVAAD-TWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 233 ~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
++..+--....++.+. .+.++++.+++.+.+.+ +.+ ...+-.+..+|.+.|++++|...++.+++..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 3444433444444433 44567777777776643 223 2455566667777778888887777777663
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.04 E-value=0.074 Score=31.86 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHH
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIID 68 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (369)
..+-++.+...+.-|++....+.+++|.+.+++..|+++|+-+...- .++...|..+++
T Consensus 25 ~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-------~~~k~~y~yilq 83 (105)
T d1v54e_ 25 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-------GPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-------cCcHHHHHHHHH
Confidence 45667778888889999999999999999999999999999988654 344556665554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.75 Score=37.11 Aligned_cols=313 Identities=10% Similarity=-0.036 Sum_probs=166.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHH
Q 036461 23 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLI 102 (369)
Q Consensus 23 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (369)
...+..+.+.+++...+..+. . .+.+...-...+.+....|+.+.|...+..+=..|.. .+.....+.
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~----~-------~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~ 143 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSP----E-------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLF 143 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC----S-------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHhcc----C-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 344567777888766544332 1 2455666667778888888888888777766444321 222333333
Q ss_pred HHHHhc------------------CCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc
Q 036461 103 HGFCYA------------------NDWNEAKCLFIEMMDQGVQPNVV-SFNVIMNELCKNGKMDEASRLLELMIQIGVRP 163 (369)
Q Consensus 103 ~~~~~~------------------~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (369)
..+... |++..|..+...+ +++.. .....+.... +...+.... ... ..
T Consensus 144 ~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l-----~~~~~~~~~a~~~l~~---~p~~~~~~~---~~~--~~ 210 (450)
T d1qsaa1 144 SVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLAN---NPNTVLTFA---RTT--GA 210 (450)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHH---CGGGHHHHH---HHS--CC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhC-----ChhHHHHHHHHHHHHh---ChHhHHHHH---hcC--CC
Confidence 333333 3333333332211 11111 1111221111 112221111 111 12
Q ss_pred cHHHHHHHHHHHHh--cCChHHHHHHHHHHHhcCCCchHHH---HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhH
Q 036461 164 NAFVYNTLMDGFCL--TGRVNRAEELFVSMESMGCKHNVFS---YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIY 238 (369)
Q Consensus 164 ~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (369)
+......+..++.+ ..+.+.+...+.............. ...+.......+..+.+...+......+. +....
T Consensus 211 ~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 288 (450)
T d1qsaa1 211 TDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLI 288 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHH
T ss_pred ChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHH
Confidence 22222222222222 3567778877777755432222111 11222233345666777777776666533 33333
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------------CCCCC--
Q 036461 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL------------KYELD-- 304 (369)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~~~~-- 304 (369)
...+......+++..+...+..+... ........--+..++...|+.+.|...|..+... |.+++
T Consensus 289 ~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~ 367 (450)
T d1qsaa1 289 ERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELK 367 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCC
Confidence 44445556677888888887776432 2223444456677888888888888888876431 11100
Q ss_pred --------HHH-----HHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 305 --------IRA-----YNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 305 --------~~~-----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
... -...+..+...|+...|...|..+... .+......+.....+.|.++.|+....+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 368 IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 000 112345677889999999999888764 24556667788889999999999876654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.60 E-value=0.28 Score=31.05 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=72.0
Q ss_pred HhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHH
Q 036461 71 CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEAS 150 (369)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (369)
...|..++..+++.+...+ .+..-||.++--....-+-+-..+.++.+-+. .|.. ..++.....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls----------~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCch----------hhhcHHHHH
Confidence 3456666666666666553 24555555555555555555555555544221 1111 112222222
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 036461 151 RLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (369)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (369)
..+-.+ ..+...+...++.+...|+-++-.++++.+.+.+ .+++...-.+..+|.+.|+..++-+++.+.-+.|
T Consensus 77 ~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 222111 1122334445566666666666666666655543 5556666666667777777777777666666665
Q ss_pred CC
Q 036461 231 IK 232 (369)
Q Consensus 231 ~~ 232 (369)
.+
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 43
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.05 E-value=0.3 Score=29.19 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036461 251 VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLI 312 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 312 (369)
.-++.+-++.+...+..|++....+.+++|.+.+++..|.++++.++... .++...|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 33455555555556666666666666666666666666666666665432 22334444443
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