Citrus Sinensis ID: 036504

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MAKLSTSIKKNNGIKIVVKKIQNSLLLGKKKILFADECEEIGDSSTNYVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKILAEQGDDDGSSVNVKWRSCNPIVQSC
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEccccccEEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHcHHHHHHcccccccccccccccccccccccccccEEEEEEEccccccEEEEEEEEHcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHccccccccccccccccccEccc
Coil and Loop (DISEMBL)
maklstsikknnGIKIVVKKIQNSLLLGKKKILFAdeceeigdsstnyvpedvkeGHVAVLAMdgndqakrfivplnylshptFMSLLEQAAEEygfdrggaltvpcqpsELEKILAEqgdddgssvnvkwrscnpivqsc
Flexible Loop (DISEMBL)
maklstsikknngikiVVKKIQNSLLLGKKKILFADECEEigdsstnyvpeDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKILAeqgdddgssvnvkwrscnpivqsc
Low Complexity Region (SEG)
MAKLSTSikknngikivvkkiQNSLLLGKKKILFADECEEIGDSSTNYVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKILAEQGDDDGSSVNVKWRSCNPIVQSC
Disordered region (IsUnstruct)
***********NGIKIVVKKIQNSLLLGKKKILFADECEEIGDSSTNYVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQ*********************************
Disordered Region (DISOPRED)
*****************VKKIQ*********************************GHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKIL****************SCNPIVQSC
Disordered Region (DISEMBL)
MAKLSTSIKKNNGIKIVVKKIQNSLLLGKKKILFADECEEIGDSSTNYVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKILAE********VNVKWRSCNPIVQSC
Disordered Region (DISPRO)
***LSTSIKKNNGIKIVVKKIQNSLLLGKK********************EDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKILAEQGD************C*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKLSTSIKKNNGIKIVVKKIQNSLLLGKKKILFADECEEIGDSSTNYVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKILAEQGDDDGSSVNVKWRSCNPIVQSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
P33079	93	Auxin-induced protein 10A	no	no	0.453	0.688	0.411	6e-09
P33080	92	Auxin-induced protein X10	no	no	0.475	0.728	0.366	2e-08
P33082	82	Auxin-induced protein X15	no	no	0.432	0.743	0.384	4e-08
P33081	82	Auxin-induced protein 15A	no	no	0.375	0.646	0.438	7e-08
P33083	90	Auxin-induced protein 6B	no	no	0.432	0.677	0.384	8e-08
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.432	0.663	0.384	6e-07

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 52  DVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRG-GALTVPCQPS 110
           DV +G+ AV      D+ +RF +P++YL+ P+F  LL QA EE+G+D   G LT+PC+  
Sbjct: 25  DVPKGYAAVYV---GDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEE 81

Query: 111 ELEKILAE 118
           E   + A 
Sbjct: 82  EFLNVTAH 89

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 52  DVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRG-GALTVPCQPS 110
           +V +G++ V      D+ +RF++P++YL+ P+F  LL QA EE+G+D   G LT+PC+  
Sbjct: 24  EVPKGYLVVYV---GDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKED 80

Query: 111 ELEKILAEQGD 121
           E   + +   D
Sbjct: 81  EFLTVTSHLND 91

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 4/65 (6%)

Query: 52  DVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRG-GALTVPCQPS 110
           D  +G++AV      ++ KRF++P++Y++ P+F  LL QA EE+G+D   G LT+PC   
Sbjct: 16  DAPKGYLAVYV---GEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEE 72

Query: 111 ELEKI 115
             ++I
Sbjct: 73  VFQRI 77

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 52  DVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRG-GALTVPC 107
           D  +G++AV      ++ KRF++P++YL+ P+F  LL QA EE+G+D   G LT+PC
Sbjct: 16  DAPKGYLAVYV---GEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPC 69

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 4/65 (6%)

Query: 52  DVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDR-GGALTVPCQPS 110
           DV++G++AV      ++ +RF++P++YL+ P+F  LL QA EE+G+    G LT+PC   
Sbjct: 24  DVEKGYLAVYV---GEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSED 80

Query: 111 ELEKI 115
             + I
Sbjct: 81  VFQHI 85

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 52  DVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRG-GALTVPCQPS 110
           D  +G++AV      +  KRF++P+++L+ P F  LL QA EE+G+D   G LT+PC   
Sbjct: 24  DAPKGYLAVYV---GENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSED 80

Query: 111 ELEKI 115
             + I
Sbjct: 81  LFQHI 85

Vigna radiata var. radiata (taxid: 3916)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
225436516	143	PREDICTED: uncharacterized protein LOC10	0.978	0.965	0.602	5e-38
225436518	143	PREDICTED: uncharacterized protein LOC10	0.978	0.965	0.602	8e-38
449459104	143	PREDICTED: uncharacterized protein LOC10	0.964	0.951	0.547	6e-32
297734931	102	unnamed protein product [Vitis vinifera]	0.680	0.941	0.632	6e-29
449456156	135	PREDICTED: uncharacterized protein LOC10	0.822	0.859	0.590	3e-28
356541940	136	PREDICTED: auxin-induced protein 6B-like	0.744	0.772	0.526	3e-24
358348025	131	Auxin-induced protein-like protein [Medi	0.765	0.824	0.464	5e-22
224109812	121	SAUR family protein [Populus trichocarpa	0.815	0.950	0.475	5e-20
224140209	125	SAUR family protein [Populus trichocarpa	0.858	0.968	0.432	1e-19
359481402	124	PREDICTED: indole-3-acetic acid-induced	0.815	0.927	0.45	2e-19

>gi|225436516|ref|XP_002273603.1| PREDICTED: uncharacterized protein LOC100244862 [Vitis vinifera] gi|297734930|emb|CBI17164.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 88/146 (60%), Positives = 109/146 (74%), Gaps = 8/146 (5%)

Query: 1   MAKLS-TSIKKNNGI---KIVVKKIQNSLLLGKKKILFADECEEIGDSSTNYVPEDVKEG 56
           M KL  TS K+ NGI   KIVV+K+Q SLLLG+K     DE +++ DS+  YVP DVKEG
Sbjct: 1   MTKLKRTSGKRKNGIVKLKIVVEKLQKSLLLGRKSACENDEFKDVSDST--YVPADVKEG 58

Query: 57  HVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKIL 116
           H AV+A+D +D+ KRF+VPLN+L+HPTF+ LLEQAAEEYGFD  GALT+PC+PSELE IL
Sbjct: 59  HFAVIAVD-DDEPKRFVVPLNFLTHPTFLKLLEQAAEEYGFDHEGALTIPCRPSELESIL 117

Query: 117 AEQGDDD-GSSVNVKWRSCNPIVQSC 141
           AEQ   +  SSV V W S   +V+SC
Sbjct: 118 AEQWQKERDSSVGVPWGSWKTMVKSC 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436518|ref|XP_002273631.1| PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 88/146 (60%), Positives = 107/146 (73%), Gaps = 8/146 (5%)

Query: 1   MAKL-STSIKKNNGI---KIVVKKIQNSLLLGKKKILFADECEEIGDSSTNYVPEDVKEG 56
           MAK  S S KK NGI   KIVV+K+Q SL LGKK     D+ EE+ DS+  YVP DVKEG
Sbjct: 1   MAKFRSNSAKKKNGIVRLKIVVEKLQKSLSLGKKSASDYDDLEEVIDSA--YVPPDVKEG 58

Query: 57  HVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKIL 116
           H AV+A+DG  + KRF+VPLN+L+HP F+ LLEQAAEEYGFD  GALT+PC+PSELE++L
Sbjct: 59  HFAVIAVDGQ-EPKRFVVPLNFLTHPPFLRLLEQAAEEYGFDHEGALTIPCRPSELERLL 117

Query: 117 AEQGD-DDGSSVNVKWRSCNPIVQSC 141
           AEQ   +   SV V W SC  +V+SC
Sbjct: 118 AEQWKPERDHSVGVNWDSCKTLVKSC 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459104|ref|XP_004147286.1| PREDICTED: uncharacterized protein LOC101219191 [Cucumis sativus] gi|449520541|ref|XP_004167292.1| PREDICTED: uncharacterized LOC101219191 [Cucumis sativus]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 80/146 (54%), Positives = 105/146 (71%), Gaps = 10/146 (6%)

Query: 1   MAKLSTSIKKNNGIKIVVKKIQNSLLLGKKKI--LFADECEEIGDSSTNYVPEDVKEGHV 58
           MAK S ++KK N IK+VV+K+Q SL  G+K I   + ++ +E+ DS+   VPEDVKEGH 
Sbjct: 1   MAK-SKTMKKKNSIKVVVEKLQKSLSRGRKPINGHYNEDFDELVDSTA--VPEDVKEGHF 57

Query: 59  AVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKILAE 118
           AV+A+DG  + KRF+VPL+ L+HP F+ LLEQAAEEYGFD  GALT+PCQPSE+EKILAE
Sbjct: 58  AVVAVDGK-EPKRFVVPLSCLTHPMFLRLLEQAAEEYGFDHEGALTIPCQPSEVEKILAE 116

Query: 119 QGDDDG---SSVNVKWRS-CNPIVQS 140
           Q   +    S   + W + C  I+QS
Sbjct: 117 QWKLESKRDSRDAITWGTLCKAIIQS 142

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734931|emb|CBI17165.3| unnamed protein product [Vitis vinifera]

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 76/98 (77%), Gaps = 2/98 (2%)

Query: 45  STNYVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALT 104
           S  YVP DVKEGH AV+A+DG  + KRF+VPLN+L+HP F+ LLEQAAEEYGFD  GALT
Sbjct: 6   SNTYVPPDVKEGHFAVIAVDGQ-EPKRFVVPLNFLTHPPFLRLLEQAAEEYGFDHEGALT 64

Query: 105 VPCQPSELEKILAEQGDDD-GSSVNVKWRSCNPIVQSC 141
           +PC+PSELE++LAEQ   +   SV V W SC  +V+SC
Sbjct: 65  IPCRPSELERLLAEQWKPERDHSVGVNWDSCKTLVKSC 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456156|ref|XP_004145816.1| PREDICTED: uncharacterized protein LOC101212725 [Cucumis sativus] gi|449526341|ref|XP_004170172.1| PREDICTED: uncharacterized protein LOC101223908 [Cucumis sativus]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/122 (59%), Positives = 89/122 (72%), Gaps = 6/122 (4%)

Query: 1   MAKLSTSIKKNNGI---KIVVKKIQNSLLLGKKKILFADECE-EIGD-SSTNYVPEDVKE 55
           MAK  T  KK NGI   K  V K+Q SL LG++     DEC+  +GD  S+  VPEDVKE
Sbjct: 1   MAKHVTIAKKKNGIVKLKTAVGKLQRSLSLGRRSDSGQDECDYAVGDDESSTPVPEDVKE 60

Query: 56  GHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKI 115
           GH AV+A+D  ++ KRF+VPL+ L++PTF+ LLE AAEEYGFD  GALTVPC+PSELE+I
Sbjct: 61  GHFAVVAVDA-EEPKRFVVPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVPCRPSELERI 119

Query: 116 LA 117
           LA
Sbjct: 120 LA 121

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541940|ref|XP_003539430.1| PREDICTED: auxin-induced protein 6B-like [Glycine max]

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 81/114 (71%), Gaps = 9/114 (7%)

Query: 14  IKIVVKKIQNSL-LLGKKKILFADECEEIGDSSTNYVPEDVKEGHVAVLAMDGNDQAKRF 72
            K VV+K+Q  L LLG+ K       E    S+++YVPEDVKEGH AV+A  G ++ KRF
Sbjct: 23  FKFVVEKLQKRLILLGRNK-------EGCDSSNSSYVPEDVKEGHFAVIAEGGGEEQKRF 75

Query: 73  IVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKI-LAEQGDDDGS 125
           ++PL+ L++PTF+ LLEQA EEYGFD  GA+T+PC+P ELE+I LA Q   +G+
Sbjct: 76  VLPLSCLTNPTFLKLLEQAEEEYGFDHEGAVTIPCRPCELERILLAHQWHQEGT 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348025|ref|XP_003638050.1| Auxin-induced protein-like protein [Medicago truncatula] gi|355503985|gb|AES85188.1| Auxin-induced protein-like protein [Medicago truncatula]

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 84/125 (67%), Gaps = 17/125 (13%)

Query: 9   KKNNGIKIV--VKKIQNSLLLGKKKILFADECEEIGDSSTNYVPEDVKEGHVAVLAM-DG 65
           KKN G  IV  ++K+Q  +++G+ K            S++ YVPEDVKEGH AV+A    
Sbjct: 11  KKNGGGGIVKLIEKLQKKIVIGRNK------------STSTYVPEDVKEGHFAVIAKGRK 58

Query: 66  NDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKILAE--QGDDD 123
            ++AKRF++PL+ L++PTF+ LLE+  EEYGFD  GALT+PC+PSEL K+L +  Q  + 
Sbjct: 59  EEEAKRFVLPLSCLTNPTFVRLLEKTEEEYGFDHEGALTIPCKPSELHKMLQQQWQKQEG 118

Query: 124 GSSVN 128
           G+ +N
Sbjct: 119 GAEIN 123

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109812|ref|XP_002315319.1| SAUR family protein [Populus trichocarpa] gi|222864359|gb|EEF01490.1| SAUR family protein [Populus trichocarpa]

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 80/120 (66%), Gaps = 5/120 (4%)

Query: 1   MAKLSTSIKKNNGI---KIVVKKIQNSLLLGKKKILFADECEEIGDSSTNYVPEDVKEGH 57
           M  L  + KKN GI   ++V +K+Q SL LG K+     +  E      + +P+DVK GH
Sbjct: 1   MGILRATGKKNIGILKLRVVAEKLQKSLSLGWKEASKYRKIHEY-HGKCSPLPKDVKVGH 59

Query: 58  VAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKILA 117
            AV+A++  D  KRF+VPL+YL+HP F+ LLE+AAEE+GF   GAL++PCQ  E+EK+LA
Sbjct: 60  FAVIAIENGD-PKRFVVPLSYLNHPRFLVLLEEAAEEFGFGHEGALSIPCQWREVEKLLA 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140209|ref|XP_002323477.1| SAUR family protein [Populus trichocarpa] gi|222868107|gb|EEF05238.1| SAUR family protein [Populus trichocarpa]

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 79/125 (63%), Gaps = 4/125 (3%)

Query: 4   LSTSIKKNNGIKIVVKKIQNSLLLGKKKILFADEC--EEIGDSSTNYVPEDVKEGHVAVL 61
           +  S+ +   +K+ ++K++  LLL   +     E   +E+ ++ T  VP DVK+GH AV 
Sbjct: 1   MEESLTRAMMLKLFIRKLKRVLLLSASRGANTSEVRFDEVMEA-TKMVPGDVKKGHFAVT 59

Query: 62  AMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKILAEQGD 121
           A  G ++ KRFIV LNYL++P F+SLLEQA EEYGF + G L VPC+P EL+KIL  +  
Sbjct: 60  ATKG-EEPKRFIVELNYLTNPDFLSLLEQAKEEYGFQQEGVLAVPCRPEELQKILENRRK 118

Query: 122 DDGSS 126
              S+
Sbjct: 119 RRAST 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481402|ref|XP_003632616.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Vitis vinifera]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 79/120 (65%), Gaps = 5/120 (4%)

Query: 18  VKKIQNSL-LLGKKKILFADECEEIGD-SSTNYVPEDVKEGHVAVLAMDGNDQAKRFIVP 75
           ++K+Q  L L+  K+++  D+ E   +  +   VP+DVKEGH AV A+ G +  KRFIV 
Sbjct: 7   IRKLQLVLSLVPSKRMVVQDDVEYDEELEAATMVPDDVKEGHFAVWAVMGGE-PKRFIVD 65

Query: 76  LNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKILAEQGDDDGSSVNVKWRSCN 135
           L YL++P F+ LLEQA EEYGF++ G L VPCQP EL+KIL  Q   + +++  +W +C 
Sbjct: 66  LCYLTNPAFLRLLEQAEEEYGFEQKGTLAVPCQPEELQKIL--QPRREPTAMARRWATCK 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:505006276	124	AT2G28085 "AT2G28085" [Arabido	0.503	0.572	0.625	2.5e-19
TAIR|locus:2085104	113	AT3G09870 "AT3G09870" [Arabido	0.553	0.690	0.537	7.5e-18
TAIR|locus:2084851	160	AT3G43120 [Arabidopsis thalian	0.588	0.518	0.411	1.2e-12
TAIR|locus:2180464	190	AT5G20810 "AT5G20810" [Arabido	0.453	0.336	0.462	6.4e-12
TAIR|locus:2062759	121	AT2G46690 "AT2G46690" [Arabido	0.475	0.553	0.417	1e-11
TAIR|locus:2035444	153	AT1G19840 "AT1G19840" [Arabido	0.659	0.607	0.387	1.3e-11
TAIR|locus:2116885	94	AT4G34800 "AT4G34800" [Arabido	0.482	0.723	0.434	1.7e-11
TAIR|locus:2087635	118	AT3G20220 "AT3G20220" [Arabido	0.531	0.635	0.371	2.2e-11
TAIR|locus:2139124	157	AT4G12410 "AT4G12410" [Arabido	0.446	0.401	0.428	2.8e-11
TAIR|locus:2079552	136	AT3G61900 "AT3G61900" [Arabido	0.453	0.470	0.406	5.8e-11

TAIR|locus:505006276 AT2G28085 "AT2G28085" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 45/72 (62%), Positives = 54/72 (75%)

Query:    49 VPEDVKEGHVAVLAMDG-NDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPC 107
             VP+DVKEGH AV+A+DG ++  +RF+VPL +L HP F  LLEQA EEYGF   GAL VPC
Sbjct:    51 VPKDVKEGHFAVIAVDGYHEPTQRFVVPLMFLEHPMFRKLLEQAEEEYGFYHDGALMVPC 110

Query:   108 QPSELEKILAEQ 119
             +PS L  IL EQ
Sbjct:   111 RPSHLRMILTEQ 122

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2085104 AT3G09870 "AT3G09870" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 43/80 (53%), Positives = 60/80 (75%)

Query:    37 ECEEIGDSSTNYVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYG 96
             E EE G++++  +P DVKEGHVAV+A+ G ++ KRF++ L  L+ P F+ LLEQA EE+G
Sbjct:    30 EFEEEGNAAS-MIPSDVKEGHVAVIAVKG-ERIKRFVLELEELNKPEFLRLLEQAREEFG 87

Query:    97 FDRGGALTVPCQPSELEKIL 116
             F   G LT+PCQP E++KIL
Sbjct:    88 FQPRGPLTIPCQPEEVQKIL 107

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2084851 AT3G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 37/90 (41%), Positives = 54/90 (60%)

Query:    30 KKILFADECEEIGDSSTNYVPE---DVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMS 86
             K++L    C+   + +T   PE   DV +G++AV       + +RFI+P N+LSH  F  
Sbjct:    54 KRLLDLKTCDS-DEETTCQSPEPPPDVPKGYLAVYV---GPELRRFIIPTNFLSHSLFKV 109

Query:    87 LLEQAAEEYGFDRGGALTVPCQPSELEKIL 116
             LLE+A EEYGFD  GALT+PC+    + +L
Sbjct:   110 LLEKAEEEYGFDHSGALTIPCEVETFKYLL 139

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2180464 AT5G20810 "AT5G20810" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query:    50 PEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQP 109
             P DV +G++AV       + +RFI+P +YLSH  F  LLE+A EE+GFD+ GALT+PC+ 
Sbjct:    76 PHDVPKGNLAVYV---GPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDQSGALTIPCEV 132

Query:   110 SELEKIL 116
                + +L
Sbjct:   133 ETFKYLL 139

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2062759 AT2G46690 "AT2G46690" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 28/67 (41%), Positives = 44/67 (65%)

Query:    51 EDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPS 110
             +DV +G +A+      ++ +RFIVP+ Y +HP FM LL++A +EYGFD+ G +T+PC   
Sbjct:    22 KDVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCHVE 81

Query:   111 ELEKILA 117
             E   + A
Sbjct:    82 EFRYVQA 88

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0006816 "calcium ion transport" evidence=RCA

TAIR|locus:2035444 AT1G19840 "AT1G19840" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 38/98 (38%), Positives = 54/98 (55%)

Query:    44 SSTNYVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGAL 103
             S +  VP DV  GHVAV    G    +RF+V  +YL+HP   +LL QA EE+GF   G L
Sbjct:    32 SVSRCVPSDVPSGHVAVCVGSG---CRRFVVRASYLNHPIISNLLVQAEEEFGFANQGPL 88

Query:   104 TVPCQPSELEKILAEQGDDDGSSVNVKWRSCNPIVQSC 141
              +PC+ S  E+ +      D SS + ++ +C   +Q C
Sbjct:    89 VIPCEESVFEEAIRFISRSD-SSRSSRF-TCPDDLQKC 124

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116885 AT4G34800 "AT4G34800" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 30/69 (43%), Positives = 44/69 (63%)

Query:    53 VKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRG-GALTVPCQPSE 111
             V +GHVAV   +  +  KRF+VP++YL+HP+F  LL +A EE+GF+   G LT+PC+   
Sbjct:    21 VPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQGLLSRAEEEFGFNHPIGGLTIPCREET 80

Query:   112 LEKILAEQG 120
                +L   G
Sbjct:    81 FVGLLNSYG 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2087635 AT3G20220 "AT3G20220" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 29/78 (37%), Positives = 49/78 (62%)

Query:    40 EIGDSSTNYVPED-VKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFD 98
             E+ D S     ++ V  GH+AV    G ++ +RF++P  YL +P F SL+++ A+E+G+D
Sbjct:    33 ELSDGSRPARDQNGVPRGHLAVYV--GREERQRFVIPTKYLQYPEFRSLMDEVADEFGYD 90

Query:    99 RGGALTVPCQPSELEKIL 116
               G + +PC+ S  E+IL
Sbjct:    91 HEGGIHIPCEESVFEEIL 108

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139124 AT4G12410 "AT4G12410" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query:    53 VKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQPSEL 112
             V  GH+ V   + +D  +R +VP+ Y +HP F  LLEQA   +GFD+ G +T+PC+ S+ 
Sbjct:    76 VPRGHLVVHVGESDDDTRRVVVPVIYFNHPLFGELLEQAERVHGFDQPGRITIPCRVSDF 135

Query:   113 EKI 115
             EK+
Sbjct:   136 EKV 138

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2079552 AT3G61900 "AT3G61900" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 26/64 (40%), Positives = 44/64 (68%)

Query:    44 SSTNYVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGAL 103
             S++ +  +DV +G +A+      ++ +RF+VP+ Y +HP FM LL +A EEYGF++ G +
Sbjct:    21 SNSKHGIKDVPKGCLAIKVGSKEEEKQRFVVPVFYFNHPLFMQLLREAEEEYGFEQKGTI 80

Query:   104 TVPC 107
             T+PC
Sbjct:    81 TIPC 84

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	SAUR65	SAUR family protein (121 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	SAUR50	SAUR family protein (185 aa)							•		0.702
	SAUR63	SAUR family protein (148 aa)							•		0.702

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	1e-25
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	3e-16
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	1e-12
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	2e-11

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score = 92.8 bits (231), Expect = 1e-25
 Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 3/68 (4%)

Query: 50  PEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQP 109
             DV +GH AV    G ++ +RF+VP++YL+HP F  LL++A EE+GFD+ G LT+PC  
Sbjct: 32  SADVPKGHFAVYV--G-EETRRFVVPISYLNHPLFQELLDRAEEEFGFDQDGGLTIPCDV 88

Query: 110 SELEKILA 117
              E +L 
Sbjct: 89  VVFEHLLW 96

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 69.0 bits (169), Expect = 3e-16
 Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 18/109 (16%)

Query: 1   MA-KLSTSIKKNNGIKIVVKKIQNSLLLGKKKILFADECEEIGDSSTNYVPEDVKEGHVA 59
           MA K S  + +   +K ++K+  +   LGKK+       +E G      +P DV +GH  
Sbjct: 1   MAIKKSNKLTQTAMLKQILKRCSS---LGKKQ-----GYDEDG------LPLDVPKGHFP 46

Query: 60  VLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRGGALTVPCQ 108
           V    G +++ R+IVP+++L+HP F SLL+QA EE+GFD    LT+PC+
Sbjct: 47  VYV--GENRS-RYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCE 92

Length = 104

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 59.8 bits (144), Expect = 1e-12
 Identities = 30/78 (38%), Positives = 51/78 (65%), Gaps = 6/78 (7%)

Query: 44  SSTNYVPEDVKEGHVAVLAMDGND-QAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRG-G 101
           SS+++VP+    GHVAV   +  + + KRF+VP+++L+HP+F   L +A EE+GF+   G
Sbjct: 30  SSSDHVPK----GHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMG 85

Query: 102 ALTVPCQPSELEKILAEQ 119
            LT+PC+      ++A +
Sbjct: 86  GLTIPCREEVFLDLIASR 103

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 56.7 bits (136), Expect = 2e-11
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 44  SSTNYVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDRG-GA 102
           SS+      V +GHVAV   +  ++ KRF+VP++YL+HP F   L +A EE GF    G 
Sbjct: 30  SSSTTTSGLVPKGHVAVYVGEQMEK-KRFVVPISYLNHPLFREFLNRAEEECGFHHSMGG 88

Query: 103 LTVPCQ 108
           LT+PC+
Sbjct: 89  LTIPCR 94

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	99.97
PRK02899	197	adaptor protein; Provisional	84.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	83.06

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=4.7e-35  Score=215.42  Aligned_cols=91  Identities=34%  Similarity=0.599  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHhHhccCCccccccccccccCCCCCCCCcCCCCCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHH
Q 036504           12 NGIKIVVKKIQNSLLLGKKKILFADECEEIGDSSTNYVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQA   91 (141)
Q Consensus        12 ~kLk~~akKwQk~~~~~rk~~s~~~~~~~~~~~~~~~~~~~v~kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~a   91 (141)
                      -.||+++|||++++..+.   .  .     .    ...|.+||+||||||||++   ++||+||++|||||+|++||++|
T Consensus        13 ~~~kq~l~r~~s~~~~~~---~--~-----~----~~~~~~vpkG~~aVyVG~~---~~RfvVp~~~L~hP~F~~LL~~a   75 (104)
T PLN03090         13 AMLKQILKRCSSLGKKQG---Y--D-----E----DGLPLDVPKGHFPVYVGEN---RSRYIVPISFLTHPEFQSLLQQA   75 (104)
T ss_pred             HHHHHHHHHHHHhcccCC---c--c-----c----ccCCCCCCCCcEEEEECCC---CEEEEEEHHHcCCHHHHHHHHHH
Confidence            456999999987744321   1  0     0    1357889999999999653   79999999999999999999999


Q ss_pred             HHhcCCCCCCceeecCCHHHHHHHHHHh
Q 036504           92 AEEYGFDRGGALTVPCQPSELEKILAEQ  119 (141)
Q Consensus        92 eeEfG~~~~G~L~IPC~~~~Fe~lL~~~  119 (141)
                      ||||||+++|+|+|||++++|+++||++
T Consensus        76 eeEfGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         76 EEEFGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             HHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            9999999999999999999999999997

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=4.8e-34  Score=207.96  Aligned_cols=95  Identities=37%  Similarity=0.566  Sum_probs=77.2

Q ss_pred             CHHHHHHHHHHhHhccCCccccccccccccCCCCCCCCcCCCCCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHH
Q 036504           13 GIKIVVKKIQNSLLLGKKKILFADECEEIGDSSTNYVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAA   92 (141)
Q Consensus        13 kLk~~akKwQk~~~~~rk~~s~~~~~~~~~~~~~~~~~~~v~kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~ae   92 (141)
                      +....++||+++....++..+....          ....++|+|||+||||+  | ++||+||++|||||+|++||++||
T Consensus         6 k~~~~~~k~~~~~~~~~~~~~~~~~----------~~~~~vp~G~~~VyVG~--~-~~Rfvvp~~~L~hp~f~~LL~~ae   72 (100)
T PF02519_consen    6 KSLASAKKWQSRARSKSSSSSSSRS----------SSESDVPKGHFAVYVGE--E-RRRFVVPVSYLNHPLFQELLEQAE   72 (100)
T ss_pred             HHHHHHHhhhhhhhhcccccccccc----------cccCCCCCCeEEEEeCc--c-ceEEEechHHcCchhHHHHHHHHh
Confidence            3445567777776665544432211          12367899999999965  3 899999999999999999999999


Q ss_pred             HhcCCCCCCceeecCCHHHHHHHHHHhc
Q 036504           93 EEYGFDRGGALTVPCQPSELEKILAEQG  120 (141)
Q Consensus        93 eEfG~~~~G~L~IPC~~~~Fe~lL~~~~  120 (141)
                      |||||+++|+|+|||++++||++||++.
T Consensus        73 eEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   73 EEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             hhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            9999999999999999999999999863

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=9.9e-33  Score=204.05  Aligned_cols=71  Identities=38%  Similarity=0.724  Sum_probs=65.6

Q ss_pred             CCCcCCCCCeEEEEEecCCCceeeEEEccCCcCcHHHHHHHHHHHHhcCCCC-CCceeecCCHHHHHHHHHHh
Q 036504           48 YVPEDVKEGHVAVLAMDGNDQAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDR-GGALTVPCQPSELEKILAEQ  119 (141)
Q Consensus        48 ~~~~~v~kG~~aVYVg~g~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~-~G~L~IPC~~~~Fe~lL~~~  119 (141)
                      ..+.+|||||||||||+++| ++||+||++|||||+|++||++|||||||++ +|+|+|||+++.|++||...
T Consensus        34 ~~~~~vpkGh~aVYVG~~~E-~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         34 TTSGLVPKGHVAVYVGEQME-KKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCCCCeEEEEECCCCC-ceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence            45788999999999987555 8999999999999999999999999999997 59999999999999999864

>PLN03220 uncharacterized protein; Provisional

Probab=99.97  E-value=3.3e-32  Score=200.42  Aligned_cols=72  Identities=38%  Similarity=0.772  Sum_probs=64.9

Q ss_pred             CCcCCCCCeEEEEEecCCC-ceeeEEEccCCcCcHHHHHHHHHHHHhcCCCC-CCceeecCCHHHHHHHHHHhc
Q 036504           49 VPEDVKEGHVAVLAMDGND-QAKRFIVPLNYLSHPTFMSLLEQAAEEYGFDR-GGALTVPCQPSELEKILAEQG  120 (141)
Q Consensus        49 ~~~~v~kG~~aVYVg~g~e-~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~-~G~L~IPC~~~~Fe~lL~~~~  120 (141)
                      .+.+|||||||||||+++| +++||+||++|||||+|++||++|||||||+| +|+|+|||+++.|+++|....
T Consensus        31 ~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~s~~  104 (105)
T PLN03220         31 SSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIASRL  104 (105)
T ss_pred             ccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHHhhc
Confidence            4678999999999987432 37999999999999999999999999999998 599999999999999998743

>PRK02899 adaptor protein; Provisional

Probab=84.00  E-value=0.93  Score=36.52  Aligned_cols=25  Identities=32%  Similarity=0.743  Sum_probs=21.6

Q ss_pred             cHHHHHHHHHHHHhcCCCCCCceee
Q 036504           81 HPTFMSLLEQAAEEYGFDRGGALTV  105 (141)
Q Consensus        81 hP~F~~LL~~aeeEfG~~~~G~L~I  105 (141)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            3477888999999999999999875

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=83.06  E-value=0.77  Score=31.54  Aligned_cols=53  Identities=17%  Similarity=0.127  Sum_probs=40.3

Q ss_pred             eeEEEccCCcC-c--HHHHHHHHHHHHhcCCCCCCceeecCCHHHHHHHHHHhcCC
Q 036504           70 KRFIVPLNYLS-H--PTFMSLLEQAAEEYGFDRGGALTVPCQPSELEKILAEQGDD  122 (141)
Q Consensus        70 ~RfvVp~~yL~-h--P~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~lL~~~~~~  122 (141)
                      ++|.++.+.|. +  ..|..|++.......-..+|.+-|-++...|++||.-++.+
T Consensus         8 ~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    8 TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            89999998887 4  47888888642222233469999999999999999998864

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00