Citrus Sinensis ID: 036574

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MSFSQALLAAGYSQGNYEQARQVVFRLLQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRVDPAFGHDEKVHLHNHHCLMMYGSVASTSGNVL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccHHHHHHHHHHHccEEEEccccHHHHHHHcccccccccHHHHHHHHHHHcccccccccEEEEcHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHcHHcccccccEEEcccEEEEEccEEccccccc
Coil and Loop (DISEMBL)
MSFSQALLAAGYSQGNYEQARQVVFRLLQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMlrvdpafghdekvhlHNHHCLMmygsvastsgnvl
Flexible Loop (DISEMBL)
MSFSQALLAAGYSQGNYEQARQVVFRLLQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRVDPAFGHDEKVHLHNHHCLMMygsvastsgnvl
Low Complexity Region (SEG)
MSFSQALLAAGYSQGNYEQARQVVFRLLQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRVDPAFGHDEKVHLHNHHCLMMYGSVASTSGNVL
Disordered region (IsUnstruct)
******LLAAGYSQGNYEQARQVVFRLLQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRVDPAFGHDEKVHLHNHHCLMMYGSV********
Disordered Region (DISOPRED)
***SQALLAAGYSQGNYEQARQVVFRLLQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRVDPAFGHDEKVHLHNHHCLMMYGSVAS******
Disordered Region (DISEMBL)
MSFSQALLAAGYSQGNYEQARQVVFRLLQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRVDPAFGHDEKVHLHNHHCLMMYGSVASTSGNVL
Disordered Region (DISPRO)
MSFSQALLAAGYSQGNYEQARQVVFRLLQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRVDPAFGHDEKVHLHNHHCLMMYGSVAST*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSFSQALLAAGYSQGNYEQARQVVFRLLQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRVDPAFGHDEKVHLHNHHCLMMYGSVASTSGNVL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
Q84K71	521	MATE efflux family protei	yes	no	0.635	0.117	0.46	1e-14
Q9SVE7	560	MATE efflux family protei	no	no	0.625	0.107	0.5	2e-07
Q9SFB0	526	MATE efflux family protei	no	no	0.385	0.070	0.594	5e-07
Q9SYD6	515	MATE efflux family protei	no	no	0.385	0.071	0.648	7e-07

>sp|Q84K71|MATE2_ARATH MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana GN=DTX44 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/100 (46%), Positives = 55/100 (55%), Gaps = 39/100 (39%)

Query: 4   SQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------- 29
           +Q+LLA  YSQG Y+QAR+V+F +LQ                                  
Sbjct: 365 AQSLLATTYSQGEYKQAREVLFGVLQVGLATGTGLAAVLFITFEPFSSLFTTDSEVLKIA 424

Query: 30  -----FVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRV 64
                FVAGSQP+NALAFVLDGLYYGVSDF +AAYSM+ V
Sbjct: 425 LSGTLFVAGSQPVNALAFVLDGLYYGVSDFGFAAYSMVIV 464

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVE7|MATE3_ARATH MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 1   MSFSQALLAAGYSQGNYEQARQVVFRLLQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYS 60
           MSFS     AG    + E  R +V + + FVA +QP+ ALAF+ DGL+YG+SDF YAA S
Sbjct: 444 MSFSSI---AGLFSKDPEVLR-IVRKGVLFVAATQPITALAFIFDGLHYGMSDFPYAACS 499

Query: 61  MLRV 64
           M+ V
Sbjct: 500 MMVV 503

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFB0|FRD3_ARATH MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/37 (59%), Positives = 30/37 (81%)

Query: 28  LQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRV 64
           + F+A +QP+N+LAFVLDG+ +G SDF Y AYSM+ V
Sbjct: 432 IPFIAATQPINSLAFVLDGVNFGASDFAYTAYSMVGV 468

Citrate transporter responsible for loading citrate into xylem tissues, which helps facilitate iron transport to shoots.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYD6|MATE1_ARATH MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 28  LQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRV 64
           L FVAG+QP+NALAFV DG+ +G SDF YAA S++ V
Sbjct: 428 LPFVAGTQPINALAFVFDGVNFGASDFGYAAASLVMV 464

Citrate transporter critical for aluminum tolerance. Responsible for citrate exudation into the rhizosphere to protect roots from aluminum toxicity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
224139264	567	predicted protein [Populus trichocarpa]	0.625	0.105	0.515	3e-16
297735614	558	unnamed protein product [Vitis vinifera]	0.625	0.107	0.474	4e-15
359481267	561	PREDICTED: MATE efflux family protein 2,	0.625	0.106	0.474	5e-15
357506191	566	MATE efflux family protein expressed [Me	0.625	0.106	0.464	5e-14
255571463	560	DNA-damage-inducible protein f, putative	0.572	0.098	0.478	6e-14
30687474	521	MATE efflux family protein [Arabidopsis	0.635	0.117	0.46	6e-13
297823717	543	mate efflux family protein [Arabidopsis	0.635	0.112	0.45	9e-13
356566713	547	PREDICTED: LOW QUALITY PROTEIN: MATE eff	0.604	0.106	0.463	9e-13
3395439	539	hypothetical protein [Arabidopsis thalia	0.635	0.113	0.46	1e-12
297789971	413	hypothetical protein ARALYDRAFT_497252 [	0.614	0.142	0.448	4e-12

>gi|224139264|ref|XP_002323027.1| predicted protein [Populus trichocarpa] gi|222867657|gb|EEF04788.1| predicted protein [Populus trichocarpa]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 57/99 (57%), Gaps = 39/99 (39%)

Query: 5   QALLAAGYSQGNYEQARQVVFRLLQ----------------------------------- 29
           QALLA+GYSQGNYEQAR V++R+LQ                                   
Sbjct: 411 QALLASGYSQGNYEQARLVIYRVLQIGLVTGIALGVILSLGFGAFSSLFSTDPEVLGVVW 470

Query: 30  ----FVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRV 64
               FVAGSQPMNALAFVLDGLYYGVSDF +AAYSM+ V
Sbjct: 471 SGIWFVAGSQPMNALAFVLDGLYYGVSDFGFAAYSMVLV 509

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735614|emb|CBI18108.3| unnamed protein product [Vitis vinifera]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/99 (47%), Positives = 58/99 (58%), Gaps = 39/99 (39%)

Query: 5   QALLAAGYSQGNYEQARQVVFRLLQ----------------------------------- 29
           QALLA+GYSQGNYE+A+QV++++L+                                   
Sbjct: 400 QALLASGYSQGNYEEAQQVIYKVLEMGLATGIALAVILFLGFGAFASLFTTDLEVLGIAW 459

Query: 30  ----FVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRV 64
               FVAGSQPMNA+AFV+DGLYYGVSDF YAAYSM+ V
Sbjct: 460 SGILFVAGSQPMNAIAFVIDGLYYGVSDFGYAAYSMVLV 498

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481267|ref|XP_002264433.2| PREDICTED: MATE efflux family protein 2, chloroplastic [Vitis vinifera]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/99 (47%), Positives = 58/99 (58%), Gaps = 39/99 (39%)

Query: 5   QALLAAGYSQGNYEQARQVVFRLLQ----------------------------------- 29
           QALLA+GYSQGNYE+A+QV++++L+                                   
Sbjct: 403 QALLASGYSQGNYEEAQQVIYKVLEMGLATGIALAVILFLGFGAFASLFTTDLEVLGIAW 462

Query: 30  ----FVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRV 64
               FVAGSQPMNA+AFV+DGLYYGVSDF YAAYSM+ V
Sbjct: 463 SGILFVAGSQPMNAIAFVIDGLYYGVSDFGYAAYSMVLV 501

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506191|ref|XP_003623384.1| MATE efflux family protein expressed [Medicago truncatula] gi|355498399|gb|AES79602.1| MATE efflux family protein expressed [Medicago truncatula]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/99 (46%), Positives = 56/99 (56%), Gaps = 39/99 (39%)

Query: 5   QALLAAGYSQGNYEQARQVVFRLLQ----------------------------------- 29
           Q+LLA+ YS GNYEQAR +++R++Q                                   
Sbjct: 411 QSLLASSYSLGNYEQARLIIYRVIQIGLGAGVALSMILFFGFGPFSSLFSTDSEVLDVAQ 470

Query: 30  ----FVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRV 64
               FVAGSQP+NALAFV+DGLYYGVSDFEYAAYSM+ V
Sbjct: 471 SGIWFVAGSQPVNALAFVIDGLYYGVSDFEYAAYSMVLV 509

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571463|ref|XP_002526679.1| DNA-damage-inducible protein f, putative [Ricinus communis] gi|223533979|gb|EEF35701.1| DNA-damage-inducible protein f, putative [Ricinus communis]

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/94 (47%), Positives = 53/94 (56%), Gaps = 39/94 (41%)

Query: 10  AGYSQGNYEQARQVVFRLLQ---------------------------------------F 30
           +G+SQGNYE+ARQV++R+LQ                                       F
Sbjct: 405 SGFSQGNYEEARQVIYRVLQIGVVTGIALGVILSLGFGAFSSLFSTDSEVLEIAWSGILF 464

Query: 31  VAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRV 64
           VAGSQPMNA+AFVLDGLYYGVSDF YAAYSM+ V
Sbjct: 465 VAGSQPMNAIAFVLDGLYYGVSDFGYAAYSMVLV 498

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30687474|ref|NP_181367.2| MATE efflux family protein [Arabidopsis thaliana] gi|75146798|sp|Q84K71.1|MATE2_ARATH RecName: Full=MATE efflux family protein 2, chloroplastic; AltName: Full=Protein DTX44; Flags: Precursor gi|28393220|gb|AAO42040.1| unknown protein [Arabidopsis thaliana] gi|28973233|gb|AAO63941.1| unknown protein [Arabidopsis thaliana] gi|330254430|gb|AEC09524.1| MATE efflux family protein [Arabidopsis thaliana]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/100 (46%), Positives = 55/100 (55%), Gaps = 39/100 (39%)

Query: 4   SQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------- 29
           +Q+LLA  YSQG Y+QAR+V+F +LQ                                  
Sbjct: 365 AQSLLATTYSQGEYKQAREVLFGVLQVGLATGTGLAAVLFITFEPFSSLFTTDSEVLKIA 424

Query: 30  -----FVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRV 64
                FVAGSQP+NALAFVLDGLYYGVSDF +AAYSM+ V
Sbjct: 425 LSGTLFVAGSQPVNALAFVLDGLYYGVSDFGFAAYSMVIV 464

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823717|ref|XP_002879741.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] gi|297325580|gb|EFH56000.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 45/100 (45%), Positives = 55/100 (55%), Gaps = 39/100 (39%)

Query: 4   SQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------- 29
           +Q+LLA  +SQG Y+QAR+V+F +LQ                                  
Sbjct: 387 AQSLLATTFSQGEYKQAREVIFGVLQVGLATGTGLAAVLFITFEPFSSLFTTDSEVLKIA 446

Query: 30  -----FVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRV 64
                FVAGSQP+NALAFVLDGLYYGVSDF +AAYSM+ V
Sbjct: 447 LSGTLFVAGSQPVNALAFVLDGLYYGVSDFGFAAYSMVIV 486

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566713|ref|XP_003551574.1| PREDICTED: LOW QUALITY PROTEIN: MATE efflux family protein 2, chloroplastic-like [Glycine max]

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 52/97 (53%), Gaps = 39/97 (40%)

Query: 5   QALLAAGYSQGNYEQARQVVFRLLQ----------------------------------- 29
           QALLA  YS GNYEQA  V+FR++Q                                   
Sbjct: 409 QALLACNYSLGNYEQASLVIFRVMQIGLGAGITLSMILFFGFGAFSSLFSTDSEVLDVAR 468

Query: 30  ----FVAGSQPMNALAFVLDGLYYGVSDFEYAAYSML 62
               FVAGSQP+NALAFV+DG+YYGVSDF YAAYSM+
Sbjct: 469 SGIWFVAGSQPVNALAFVIDGIYYGVSDFGYAAYSMV 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3395439|gb|AAC28771.1| hypothetical protein [Arabidopsis thaliana]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 55/100 (55%), Gaps = 39/100 (39%)

Query: 4   SQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------- 29
           +Q+LLA  YSQG Y+QAR+V+F +LQ                                  
Sbjct: 365 AQSLLATTYSQGEYKQAREVLFGVLQVGLATGTGLAAVLFITFEPFSSLFTTDSEVLKIA 424

Query: 30  -----FVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRV 64
                FVAGSQP+NALAFVLDGLYYGVSDF +AAYSM+ V
Sbjct: 425 LSGTLFVAGSQPVNALAFVLDGLYYGVSDFGFAAYSMVIV 464

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297789971|ref|XP_002862903.1| hypothetical protein ARALYDRAFT_497252 [Arabidopsis lyrata subsp. lyrata] gi|297308672|gb|EFH39162.1| hypothetical protein ARALYDRAFT_497252 [Arabidopsis lyrata subsp. lyrata]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 54/98 (55%), Gaps = 39/98 (39%)

Query: 4   SQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------- 29
           +Q+LLA  +SQG Y+QAR+V+F +LQ                                  
Sbjct: 257 AQSLLATTFSQGEYKQAREVIFGVLQVGLATGTGLAAVLFITFEPFSSLFTTDSEVLKIA 316

Query: 30  -----FVAGSQPMNALAFVLDGLYYGVSDFEYAAYSML 62
                FVAGSQP+NALAFVLDGLYYGVSDF +AAYSM+
Sbjct: 317 LSGTLFVAGSQPVNALAFVLDGLYYGVSDFGFAAYSMV 354

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
TAIR|locus:2057135	521	AT2G38330 "AT2G38330" [Arabido	0.364	0.067	0.857	5.4e-10
TAIR|locus:2121783	560	AT4G38380 [Arabidopsis thalian	0.625	0.107	0.5	2.3e-07
TAIR|locus:2008236	515	AT1G51340 [Arabidopsis thalian	0.385	0.071	0.648	9.1e-07
TAIR|locus:2077477	526	FRD3 "FERRIC REDUCTASE DEFECTI	0.385	0.070	0.594	9.4e-07

TAIR|locus:2057135 AT2G38330 "AT2G38330" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.4e-10, P = 5.4e-10
 Identities = 30/35 (85%), Positives = 33/35 (94%)

Query:    30 FVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRV 64
             FVAGSQP+NALAFVLDGLYYGVSDF +AAYSM+ V
Sbjct:   430 FVAGSQPVNALAFVLDGLYYGVSDFGFAAYSMVIV 464

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2121783 AT4G38380 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 32/64 (50%), Positives = 42/64 (65%)

Query:     1 MSFSQALLAAGYSQGNYEQARQVVFRLLQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYS 60
             MSFS     AG    + E  R +V + + FVA +QP+ ALAF+ DGL+YG+SDF YAA S
Sbjct:   444 MSFSSI---AGLFSKDPEVLR-IVRKGVLFVAATQPITALAFIFDGLHYGMSDFPYAACS 499

Query:    61 MLRV 64
             M+ V
Sbjct:   500 MMVV 503

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2008236 AT1G51340 [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 9.1e-07, P = 9.1e-07
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query:    28 LQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRV 64
             L FVAG+QP+NALAFV DG+ +G SDF YAA S++ V
Sbjct:   428 LPFVAGTQPINALAFVFDGVNFGASDFGYAAASLVMV 464

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2077477 FRD3 "FERRIC REDUCTASE DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 9.4e-07, P = 9.4e-07
 Identities = 22/37 (59%), Positives = 30/37 (81%)

Query:    28 LQFVAGSQPMNALAFVLDGLYYGVSDFEYAAYSMLRV 64
             + F+A +QP+N+LAFVLDG+ +G SDF Y AYSM+ V
Sbjct:   432 IPFIAATQPINSLAFVLDGVNFGASDFAYTAYSMVGV 468


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.135   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       96        96   0.00091  102 3  11 22  0.45    29
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  504 (54 KB)
  Total size of DFA:  102 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.46u 0.12s 9.58t   Elapsed:  00:00:00
  Total cpu time:  9.46u 0.12s 9.58t   Elapsed:  00:00:00
  Start:  Thu May  9 19:16:38 2013   End:  Thu May  9 19:16:38 2013

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0006879 "cellular iron ion homeostasis" evidence=IMP

GO:0015137 "citrate transmembrane transporter activity" evidence=IDA

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0071732 "cellular response to nitric oxide" evidence=IEP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00161193 hypothetical protein (567 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	96
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	4e-07

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 46.0 bits (110), Expect = 4e-07
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 39/98 (39%)

Query: 4   SQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------- 29
           ++AL+      G+ + AR+V  RLLQ                                  
Sbjct: 284 AEALVGRALGAGDRKAARRVARRLLQWGLGLGVLLALLFFLGGEPIIRLFTDDPAVLALA 343

Query: 30  -----FVAGSQPMNALAFVLDGLYYGVSDFEYAAYSML 62
                ++A   P+ ALAFVLDG++ G +D  Y   SML
Sbjct: 344 ATYLPWLALLPPIGALAFVLDGIFIGATDTRYLRNSML 381

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	98.4
PRK10189	478	MATE family multidrug exporter; Provisional	98.35
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	97.94
PRK01766	456	multidrug efflux protein; Reviewed	97.69
PRK00187	464	multidrug efflux protein NorA; Provisional	97.25
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	97.23
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	97.21
PRK10189	478	MATE family multidrug exporter; Provisional	97.1
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	96.88
PRK00187	464	multidrug efflux protein NorA; Provisional	96.85
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	96.82
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	96.5
PRK01766	456	multidrug efflux protein; Reviewed	96.22
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	95.55
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	95.13
TIGR01695	502	mviN integral membrane protein MviN. This model re	93.34
KOG1347	473	consensus Uncharacterized membrane protein, predic	91.6
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	91.13
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	80.85

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=98.40  E-value=5.9e-07  Score=73.06  Aligned_cols=68  Identities=26%  Similarity=0.344  Sum_probs=62.0

Q ss_pred             hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574            2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF   42 (96)
Q Consensus         2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF   42 (96)
                      +|.|.++|+.+|+||++++|+.++..+.                                       +++.+||..++.+
T Consensus       298 ~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~  377 (455)
T COG0534         298 QAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQF  377 (455)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999988                                       8899999999999


Q ss_pred             hhhhhhhcccchHHHHHHHHHHhhhcc
Q 036574           43 VLDGLYYGVSDFEYAAYSMLRVDPAFG   69 (96)
Q Consensus        43 vlDGIl~GAgD~~YLA~a~l~~a~~~g   69 (96)
                      +.+|.+.|+||.++....++.....++
T Consensus       378 v~~g~lrg~g~~~~~~~~~~~~~~~~~  404 (455)
T COG0534         378 VLSGVLRGAGDAKIPFIISLLSYWGFR  404 (455)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            999999999999998888888754443

>PRK10189 MATE family multidrug exporter; Provisional

Probab=98.35  E-value=8.5e-07  Score=72.13  Aligned_cols=64  Identities=22%  Similarity=0.205  Sum_probs=58.2

Q ss_pred             hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574            2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF   42 (96)
Q Consensus         2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF   42 (96)
                      .|+|+++|+.+|++|++++|+..++.++                                       +++..||+.++.+
T Consensus       316 ~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~  395 (478)
T PRK10189        316 SASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASW  395 (478)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999987                                       7888899999999


Q ss_pred             hhhhhhhcccchHHHHHHHHHHh
Q 036574           43 VLDGLYYGVSDFEYAAYSMLRVD   65 (96)
Q Consensus        43 vlDGIl~GAgD~~YLA~a~l~~a   65 (96)
                      +++|++.|+||.++..+..+...
T Consensus       396 ~~~g~lrg~G~t~~~~~i~~~~~  418 (478)
T PRK10189        396 VLPAGLKGARDARYAMWVSMLGM  418 (478)
T ss_pred             HHHhHhhcCCCchHHHHHHHHHH
Confidence            99999999999999887766553

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=97.94  E-value=2.7e-05  Score=62.71  Aligned_cols=63  Identities=16%  Similarity=0.135  Sum_probs=48.4

Q ss_pred             hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574            2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF   42 (96)
Q Consensus         2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF   42 (96)
                      .|.|+++|+.+|+||++++|+..++.++                                       +....+|++.+.+
T Consensus       289 ~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~  368 (441)
T PRK10367        289 YAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCY  368 (441)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999887                                       3334466666888


Q ss_pred             hhhhhhhcccchHHHHHHHHHH
Q 036574           43 VLDGLYYGVSDFEYAAYSMLRV   64 (96)
Q Consensus        43 vlDGIl~GAgD~~YLA~a~l~~   64 (96)
                      ++|+++.|+.+....++.++.+
T Consensus       369 ~~~~~~~g~lrg~dt~~~~~~~  390 (441)
T PRK10367        369 LLDGMFIGATRAAEMRNSMAVA  390 (441)
T ss_pred             HHHHHhhCccchHHHHHHHHHH
Confidence            9999998888633333344443

>PRK01766 multidrug efflux protein; Reviewed

Probab=97.69  E-value=9.3e-05  Score=58.35  Aligned_cols=64  Identities=19%  Similarity=0.098  Sum_probs=57.1

Q ss_pred             hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574            2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF   42 (96)
Q Consensus         2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF   42 (96)
                      .|.++++|+++|+||++++|+..+..++                                       +....+|..++-+
T Consensus       296 ~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~  375 (456)
T PRK01766        296 MALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQV  375 (456)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788999999999999999999998887                                       6677788899999


Q ss_pred             hhhhhhhcccchHHHHHHHHHHh
Q 036574           43 VLDGLYYGVSDFEYAAYSMLRVD   65 (96)
Q Consensus        43 vlDGIl~GAgD~~YLA~a~l~~a   65 (96)
                      ++.|++.|.||.++-.+..+...
T Consensus       376 ~~~~~l~g~g~~~~~~~~~~~~~  398 (456)
T PRK01766        376 IGSGALRGYKDTRVIFFITFIAY  398 (456)
T ss_pred             HHHhchhccCccHHHHHHHHHHH
Confidence            99999999999999888877754

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=97.25  E-value=0.0008  Score=54.25  Aligned_cols=64  Identities=14%  Similarity=0.026  Sum_probs=49.5

Q ss_pred             hhHHHHHHHhhcCCCHHHHHHHHHHHHH--------------------------------------------HHHhhccc
Q 036574            2 SFSQALLAAGYSQGNYEQARQVVFRLLQ--------------------------------------------FVAGSQPM   37 (96)
Q Consensus         2 IAgQALiG~aLGa~d~~~ar~v~~rvl~--------------------------------------------~va~~QPi   37 (96)
                      .|.++++|+.+|+||++++++..++.+.                                            +.+..+|.
T Consensus       293 ~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~  372 (464)
T PRK00187        293 YAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELF  372 (464)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence            4789999999999999999999998877                                            12223444


Q ss_pred             hhhhhhhhhhhhcccchHHHHHHHHHHh
Q 036574           38 NALAFVLDGLYYGVSDFEYAAYSMLRVD   65 (96)
Q Consensus        38 nglaFvlDGIl~GAgD~~YLA~a~l~~a   65 (96)
                      .++-+++.|++.|.||.++.....+...
T Consensus       373 ~~~~~v~~~~lrg~G~~~~~~~~~~~~~  400 (464)
T PRK00187        373 DGTQTIAMGAIRGLKDARTTFLIGLACY  400 (464)
T ss_pred             hHHHHHHHHhHhccCccHHHHHHHHHHH
Confidence            4455566789999999999777776654

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=97.23  E-value=0.00088  Score=53.60  Aligned_cols=62  Identities=6%  Similarity=0.094  Sum_probs=49.3

Q ss_pred             hhHHHHHHHhhcCCCHHHHHHHHHHHHH----------------------------------------HHHhhccchhhh
Q 036574            2 SFSQALLAAGYSQGNYEQARQVVFRLLQ----------------------------------------FVAGSQPMNALA   41 (96)
Q Consensus         2 IAgQALiG~aLGa~d~~~ar~v~~rvl~----------------------------------------~va~~QPingla   41 (96)
                      .+.|+++|+.+|+||++++|+..++.++                                        +.+..+|.-++-
T Consensus       292 ~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~  371 (453)
T PRK09575        292 EGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFL  371 (453)
T ss_pred             HhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999998                                        455555666666


Q ss_pred             hhhhhhhhcccchHHHHHHHHH
Q 036574           42 FVLDGLYYGVSDFEYAAYSMLR   63 (96)
Q Consensus        42 FvlDGIl~GAgD~~YLA~a~l~   63 (96)
                      +++-+.+.|.||.++.-..++.
T Consensus       372 ~~~~~~~~~~g~~~~~~~~~~~  393 (453)
T PRK09575        372 VLASAYFMAVNQGGKALFISIG  393 (453)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHH
Confidence            6666678999999886555443

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=97.21  E-value=3.3e-05  Score=51.84  Aligned_cols=64  Identities=30%  Similarity=0.396  Sum_probs=57.8

Q ss_pred             hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574            2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF   42 (96)
Q Consensus         2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF   42 (96)
                      .+.|.++++..|++|+++++++.++.+.                                       +.....|..++..
T Consensus        50 ~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (162)
T PF01554_consen   50 TALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFF  129 (162)
T ss_dssp             HHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             ccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHH
Confidence            4679999999999999999999998888                                       7778899999999


Q ss_pred             hhhhhhhcccchHHHHHHHHHHh
Q 036574           43 VLDGLYYGVSDFEYAAYSMLRVD   65 (96)
Q Consensus        43 vlDGIl~GAgD~~YLA~a~l~~a   65 (96)
                      ++.+++.|.||.++..+..+...
T Consensus       130 ~~~~~l~~~g~~~~~~~~~~~~~  152 (162)
T PF01554_consen  130 VFSGILQGIGRTKIAMYISIISF  152 (162)
T ss_dssp             HHCCCCGCCSTHCCCHHHHHHHH
T ss_pred             HHHHHHHHCCcHHHHHHHHHHHH
Confidence            99999999999999888877765

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>PRK10189 MATE family multidrug exporter; Provisional

Probab=97.10  E-value=0.0016  Score=53.24  Aligned_cols=63  Identities=14%  Similarity=0.119  Sum_probs=54.5

Q ss_pred             hhHHHHHHHhhcCCCHHHHHHHHHHHHH-----------------------------------------HHHhhccchhh
Q 036574            2 SFSQALLAAGYSQGNYEQARQVVFRLLQ-----------------------------------------FVAGSQPMNAL   40 (96)
Q Consensus         2 IAgQALiG~aLGa~d~~~ar~v~~rvl~-----------------------------------------~va~~QPingl   40 (96)
                      .+.++++++.+|+||++++++..++.+.                                         +....+|...+
T Consensus        86 ~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~  165 (478)
T PRK10189         86 LGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAI  165 (478)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999888776                                         56677888999


Q ss_pred             hhhhhhhhhcccchHHHHHHHHHH
Q 036574           41 AFVLDGLYYGVSDFEYAAYSMLRV   64 (96)
Q Consensus        41 aFvlDGIl~GAgD~~YLA~a~l~~   64 (96)
                      .+++.+.+.|.||.+.-...++..
T Consensus       166 ~~~~~~~lr~~G~~~~~~~i~~~~  189 (478)
T PRK10189        166 TLIGSGALRGAGNTKIPLLINGGM  189 (478)
T ss_pred             HHHHHHHHHhcCchHHhHHHHHHH
Confidence            999999999999999877766554

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=96.88  E-value=0.0032  Score=50.85  Aligned_cols=63  Identities=17%  Similarity=0.121  Sum_probs=53.9

Q ss_pred             hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574            2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF   42 (96)
Q Consensus         2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF   42 (96)
                      ++.++++++.+|+||++++++..+..+.                                       +.....|...+.+
T Consensus        67 ~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~  146 (441)
T PRK10367         67 MSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANL  146 (441)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999888777                                       6677788889999


Q ss_pred             hhhhhhhcccchHHHHHHHHHH
Q 036574           43 VLDGLYYGVSDFEYAAYSMLRV   64 (96)
Q Consensus        43 vlDGIl~GAgD~~YLA~a~l~~   64 (96)
                      ++.+++.|.||.+.--..+++.
T Consensus       147 ~~~~~lr~~G~~~~~~~~~ii~  168 (441)
T PRK10367        147 VLLGWLLGVQYARAPVILLVVG  168 (441)
T ss_pred             HHHHHHHHcccchHHHHHHHHH
Confidence            9999999999999866665554

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=96.85  E-value=0.0033  Score=50.73  Aligned_cols=63  Identities=16%  Similarity=0.049  Sum_probs=54.1

Q ss_pred             hhHHHHHHHhhcCCCHHHHHHHHHHHHH--------------------------------------HHHhhccchhhhhh
Q 036574            2 SFSQALLAAGYSQGNYEQARQVVFRLLQ--------------------------------------FVAGSQPMNALAFV   43 (96)
Q Consensus         2 IAgQALiG~aLGa~d~~~ar~v~~rvl~--------------------------------------~va~~QPinglaFv   43 (96)
                      .+.++++++.+|++|++++|+..++.+.                                      +.....|..++.++
T Consensus        67 ~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~  146 (464)
T PRK00187         67 AAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMA  146 (464)
T ss_pred             HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999888777                                      66677888899999


Q ss_pred             hhhhhhcccchHHHHHHHHHH
Q 036574           44 LDGLYYGVSDFEYAAYSMLRV   64 (96)
Q Consensus        44 lDGIl~GAgD~~YLA~a~l~~   64 (96)
                      +.+.+.|.||.+..-..+++.
T Consensus       147 ~~~~l~~~g~~~~~~~~~~~~  167 (464)
T PRK00187        147 LRGFTSALGRAGPVMVISLAG  167 (464)
T ss_pred             HHHHHHHcCCcHHHHHHHHHH
Confidence            999999999999866665544

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=96.82  E-value=0.0031  Score=51.50  Aligned_cols=64  Identities=25%  Similarity=0.394  Sum_probs=57.5

Q ss_pred             hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574            2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF   42 (96)
Q Consensus         2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF   42 (96)
                      ++..+++++++|+||++++|++.++.+.                                       +.....|...+-+
T Consensus        74 ~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~  153 (455)
T COG0534          74 TGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSF  153 (455)
T ss_pred             HhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999998887                                       7788889999999


Q ss_pred             hhhhhhhcccchHHHHHHHHHHh
Q 036574           43 VLDGLYYGVSDFEYAAYSMLRVD   65 (96)
Q Consensus        43 vlDGIl~GAgD~~YLA~a~l~~a   65 (96)
                      ++.+.+.|.||.+.--+.++++.
T Consensus       154 ~~~~~lr~~G~~~~~m~~~~~~~  176 (455)
T COG0534         154 VLSGILRGLGDTKTPMYILLLGN  176 (455)
T ss_pred             HHHHHHHhcCCCchhHHHHHHHH
Confidence            99999999999999777777764

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=96.50  E-value=0.0092  Score=47.83  Aligned_cols=63  Identities=17%  Similarity=0.051  Sum_probs=51.1

Q ss_pred             hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574            2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF   42 (96)
Q Consensus         2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF   42 (96)
                      .+.++++++.+|+||++++++..++.++                                       +.....|.-.+.+
T Consensus        70 ~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~  149 (453)
T PRK09575         70 MGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAI  149 (453)
T ss_pred             ccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999888                                       4555566777777


Q ss_pred             hhhhhhhcccchHHHHHHHHHH
Q 036574           43 VLDGLYYGVSDFEYAAYSMLRV   64 (96)
Q Consensus        43 vlDGIl~GAgD~~YLA~a~l~~   64 (96)
                      .+.+++.+.||.++....++..
T Consensus       150 ~~~~~l~~~g~~~~~~~~~~~~  171 (453)
T PRK09575        150 ALPFLLRNDESPNLATGLMVIG  171 (453)
T ss_pred             HHHHHHHcCCChHHHHHHHHHH
Confidence            8888899999988766665554

>PRK01766 multidrug efflux protein; Reviewed

Probab=96.22  E-value=0.015  Score=45.95  Aligned_cols=64  Identities=16%  Similarity=-0.020  Sum_probs=52.3

Q ss_pred             hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574            2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF   42 (96)
Q Consensus         2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF   42 (96)
                      .+.+.++++++|++|++++++..++.++                                       +.....|..++.+
T Consensus        69 ~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~  148 (456)
T PRK01766         69 LALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQ  148 (456)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999988877                                       3345567777778


Q ss_pred             hhhhhhhcccchHHHHHHHHHHh
Q 036574           43 VLDGLYYGVSDFEYAAYSMLRVD   65 (96)
Q Consensus        43 vlDGIl~GAgD~~YLA~a~l~~a   65 (96)
                      ++-+++.|.||.+...+.++...
T Consensus       149 ~~~~~l~~~g~~~~~~~~~~i~~  171 (456)
T PRK01766        149 VLRSFIDGLGKTKPTMVIGFLGL  171 (456)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHH
Confidence            88889999999988777766553

>TIGR00797 matE putative efflux protein, MATE family

Probab=95.55  E-value=0.057  Score=40.20  Aligned_cols=63  Identities=27%  Similarity=0.348  Sum_probs=52.0

Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhhh
Q 036574            3 FSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAFV   43 (96)
Q Consensus         3 AgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaFv   43 (96)
                      +.+..+++.+|++|++++++..++.++                                       +.....|..++..+
T Consensus        51 ~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~  130 (342)
T TIGR00797        51 ATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFV  130 (342)
T ss_pred             hHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456678999999999999999888877                                       45556777777788


Q ss_pred             hhhhhhcccchHHHHHHHHHHh
Q 036574           44 LDGLYYGVSDFEYAAYSMLRVD   65 (96)
Q Consensus        44 lDGIl~GAgD~~YLA~a~l~~a   65 (96)
                      +.+++.|.+|+++..+..+...
T Consensus       131 ~~~~l~~~~~~~~~~~~~i~~~  152 (342)
T TIGR00797       131 LRGFLRGQGDTKTPMYITLIGN  152 (342)
T ss_pred             HHHHHHhcCCchHHHHHHHHHH
Confidence            8999999999999888877653

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=95.13  E-value=0.071  Score=41.77  Aligned_cols=62  Identities=15%  Similarity=0.161  Sum_probs=50.2

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHH-----------------------------------HHHhhccchhhhhhhhhhh
Q 036574            4 SQALLAAGYSQGNYEQARQVVFRLLQ-----------------------------------FVAGSQPMNALAFVLDGLY   48 (96)
Q Consensus         4 gQALiG~aLGa~d~~~ar~v~~rvl~-----------------------------------~va~~QPinglaFvlDGIl   48 (96)
                      .+..+++..|++|.++.++..++..+                                   +.+..+|+.++..+..+++
T Consensus       295 ~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l  374 (488)
T TIGR02900       295 LVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPDAGNFIRVLAPSFPFLYFSAPLQSIL  374 (488)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556899999999999999998887                                   5556677777777888899


Q ss_pred             hcccchHHHHHHHHHHh
Q 036574           49 YGVSDFEYAAYSMLRVD   65 (96)
Q Consensus        49 ~GAgD~~YLA~a~l~~a   65 (96)
                      .+.||.++..+.++..+
T Consensus       375 ~~~g~~~~~~~~~~~~~  391 (488)
T TIGR02900       375 QGLGKQKVALRNSLIGA  391 (488)
T ss_pred             HhcCcchHHHHHHHHHH
Confidence            99999998888776664

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR01695 mviN integral membrane protein MviN

Probab=93.34  E-value=0.21  Score=39.41  Aligned_cols=26  Identities=19%  Similarity=0.293  Sum_probs=22.4

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHH
Q 036574            4 SQALLAAGYSQGNYEQARQVVFRLLQ   29 (96)
Q Consensus         4 gQALiG~aLGa~d~~~ar~v~~rvl~   29 (96)
                      .+..+++..|++|.+++|+..++.++
T Consensus       283 ~~P~~s~~~~~~~~~~~~~~~~~~~~  308 (502)
T TIGR01695       283 LLPKLSRHASEGNWNELRDLLNQGIR  308 (502)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            45568999999999999999998887

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=91.60  E-value=0.062  Score=45.09  Aligned_cols=68  Identities=25%  Similarity=0.148  Sum_probs=58.3

Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhhh
Q 036574            3 FSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAFV   43 (96)
Q Consensus         3 AgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaFv   43 (96)
                      |...-++..||+++++++|..+...+.                                       +++.++.+|+.-.+
T Consensus       307 a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v  386 (473)
T KOG1347|consen  307 AVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAV  386 (473)
T ss_pred             hHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            556678999999999999988877754                                       88899999999999


Q ss_pred             hhhhhhcccchHHHHHHHHHHhhhccC
Q 036574           44 LDGLYYGVSDFEYAAYSMLRVDPAFGH   70 (96)
Q Consensus        44 lDGIl~GAgD~~YLA~a~l~~a~~~g~   70 (96)
                      +.|+..|.|.-.+.|+..+....++|.
T Consensus       387 ~~Gva~g~g~q~~ga~vnl~~yyl~G~  413 (473)
T KOG1347|consen  387 LSGVARGSGWQQIGAVINLVAYYLVGA  413 (473)
T ss_pred             hhheEEeeccccceEEEeeeeeeEecC
Confidence            999999999999999988887655554

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=91.13  E-value=0.72  Score=36.16  Aligned_cols=62  Identities=19%  Similarity=0.319  Sum_probs=46.0

Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHHHHH-----------------------------------HHHhhccchhhhhhhhhh
Q 036574            3 FSQALLAAGYSQGNYEQARQVVFRLLQ-----------------------------------FVAGSQPMNALAFVLDGL   47 (96)
Q Consensus         3 AgQALiG~aLGa~d~~~ar~v~~rvl~-----------------------------------~va~~QPinglaFvlDGI   47 (96)
                      +..-.+++..|++|++++++..+..+.                                   +.....|+.++..++.+.
T Consensus        59 a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  138 (488)
T TIGR02900        59 AISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSLYSLLVICPAMPFIALSSVLKGY  138 (488)
T ss_pred             HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445567788999999999888776655                                   223445556667778999


Q ss_pred             hhcccchHHHHHHHHHH
Q 036574           48 YYGVSDFEYAAYSMLRV   64 (96)
Q Consensus        48 l~GAgD~~YLA~a~l~~   64 (96)
                      +.|-+|+++.+...+..
T Consensus       139 l~~~~~~~~~~~~~~i~  155 (488)
T TIGR02900       139 FQGISNMKPPAYIQVIE  155 (488)
T ss_pred             HhhhccchHhHHHHHHH
Confidence            99999999988776544

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR00797 matE putative efflux protein, MATE family

Probab=80.85  E-value=3.3  Score=30.76  Aligned_cols=42  Identities=12%  Similarity=0.154  Sum_probs=31.6

Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHHHHH-HHHhhccchhhhhhh
Q 036574            3 FSQALLAAGYSQGNYEQARQVVFRLLQ-FVAGSQPMNALAFVL   44 (96)
Q Consensus         3 AgQALiG~aLGa~d~~~ar~v~~rvl~-~va~~QPinglaFvl   44 (96)
                      +.+..+++.+|++|.++.|+..++.++ .+...-|+....+++
T Consensus       274 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  316 (342)
T TIGR00797       274 AVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILF  316 (342)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788999999999999999998888 444455555544433

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	96
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	97.05
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	93.2

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=97.05  E-value=0.00025  Score=52.84  Aligned_cols=64  Identities=17%  Similarity=0.043  Sum_probs=56.7

Q ss_pred             hhHHHHHHHhhcCCCHHHHHHHHHHHHH---------------------------------------HHHhhccchhhhh
Q 036574            2 SFSQALLAAGYSQGNYEQARQVVFRLLQ---------------------------------------FVAGSQPMNALAF   42 (96)
Q Consensus         2 IAgQALiG~aLGa~d~~~ar~v~~rvl~---------------------------------------~va~~QPinglaF   42 (96)
                      .+.+..+++.+|++|++++|+..++.++                                       +.+..+|+.++..
T Consensus       295 ~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  374 (460)
T 3mkt_A          295 AAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQV  374 (460)
T ss_dssp             HHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678899999999999999999988877                                       7788889999999


Q ss_pred             hhhhhhhcccchHHHHHHHHHHh
Q 036574           43 VLDGLYYGVSDFEYAAYSMLRVD   65 (96)
Q Consensus        43 vlDGIl~GAgD~~YLA~a~l~~a   65 (96)
                      ++.+++.|.||.++..+..+...
T Consensus       375 ~~~~~l~~~g~~~~~~~~~~~~~  397 (460)
T 3mkt_A          375 VAAGSLRGYKDMTAIFHRTFISY  397 (460)
T ss_dssp             HHHHHHGGGSTHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCchHHHHHHHHHHH
Confidence            99999999999999888877664

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=93.20  E-value=0.03  Score=41.52  Aligned_cols=62  Identities=18%  Similarity=-0.043  Sum_probs=48.1

Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHHHHH--------------------------------------HHHhhccchhhhhhh
Q 036574            3 FSQALLAAGYSQGNYEQARQVVFRLLQ--------------------------------------FVAGSQPMNALAFVL   44 (96)
Q Consensus         3 AgQALiG~aLGa~d~~~ar~v~~rvl~--------------------------------------~va~~QPinglaFvl   44 (96)
                      +.+.++++.+|++|.+++++..++.+.                                      +.....|+.++..++
T Consensus        70 ~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~  149 (460)
T 3mkt_A           70 ALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQAL  149 (460)
T ss_dssp             HHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778889999999999988887766                                      334445667777788


Q ss_pred             hhhhhcccchHHHHHHHHHH
Q 036574           45 DGLYYGVSDFEYAAYSMLRV   64 (96)
Q Consensus        45 DGIl~GAgD~~YLA~a~l~~   64 (96)
                      .+++.|-+|+++.....+..
T Consensus       150 ~~~l~~~~~~~~~~~~~~~~  169 (460)
T 3mkt_A          150 RSFTDGMSLTKPAMVIGFIG  169 (460)
T ss_dssp             TTTTCTTSCCTTTHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHHHH
Confidence            99999999998877776665

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00